RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3199
         (1144 letters)



>d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas
           putida [TaxId: 303]}
          Length = 103

 Score = 30.9 bits (70), Expect = 0.23
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 730 SMFKKTSDNLLQYVCGKRAEAIASRRKLLEPAIRVPPRILKDIPPSEEYLFDPKSLAEAM 789
           S+F    D +L      R       ++++   + V P +L D   S       K +  A 
Sbjct: 43  SVFYLQGDRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGD--ES----VPLKEIIAAA 96

Query: 790 RAQSSSS 796
           +A+ SS+
Sbjct: 97  KAELSSA 103



 Score = 30.9 bits (70), Expect = 0.24
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 372 SMFKKTSDNLLQYVCGKRAEAIASRRKLLEPAIRVPPRILKDIPPSEEYLFDPKSLAEAM 431
           S+F    D +L      R       ++++   + V P +L D   S       K +  A 
Sbjct: 43  SVFYLQGDRVLAVDTVNRPVEFNQSKQIITDRLPVEPNLLGD--ES----VPLKEIIAAA 96

Query: 432 RAQSSS 437
           +A+ SS
Sbjct: 97  KAELSS 102


>d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase,
           BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}
          Length = 97

 Score = 29.0 bits (65), Expect = 0.98
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 13/95 (13%)

Query: 336 HGLILQRLALADTINMVVSKHPSVKSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIAS 395
             L +Q   LA     +V    S+ +   + +  ++         ++   C   A   A 
Sbjct: 16  GALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQK-------GRIVGATCVNNARDFAP 68

Query: 396 RRKLLEPAIRVPPRILKDIPPSEEYLFDPKSLAEA 430
            R+LL    +     L D  P+     D + LA A
Sbjct: 69  LRRLLAVGAKPDRAALAD--PA----TDLRKLAAA 97



 Score = 29.0 bits (65), Expect = 0.98
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 13/95 (13%)

Query: 694 HGLILQRLALADTINMVVSKHPSVKSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIAS 753
             L +Q   LA     +V    S+ +   + +  ++         ++   C   A   A 
Sbjct: 16  GALRIQVAGLASGDEEIVRGEVSLDAPKFTLIELQK-------GRIVGATCVNNARDFAP 68

Query: 754 RRKLLEPAIRVPPRILKDIPPSEEYLFDPKSLAEA 788
            R+LL    +     L D  P+     D + LA A
Sbjct: 69  LRRLLAVGAKPDRAALAD--PA----TDLRKLAAA 97


>d1thqa_ f.4.1.2 (A:) Outer membrane enzyme PagP {Escherichia coli
           [TaxId: 562]}
          Length = 157

 Score = 28.6 bits (64), Expect = 2.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 965 NITVQAQYIPGMYNN 979
            +T Q  YIPG YNN
Sbjct: 129 PVTFQMTYIPGTYNN 143


>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha, AccA {Escherichia coli
           [TaxId: 562]}
          Length = 316

 Score = 28.5 bits (63), Expect = 4.6
 Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 9/107 (8%)

Query: 88  DMKKKMLSWAFTRGLVLSPSAFSKQIRGSSHSHDIVARAVAPLKSEFVSRETADRILSNI 147
            +  K+    ++   V+SP   +  +  S+    + A A+  ++      +  D I+   
Sbjct: 209 GVGDKVNMLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIRPRLKELKLIDSIIPEP 268

Query: 148 EKPASRSSSVAMESTGEAA-------RDLSLDDRFKAHEEKM--MGR 185
              A R+      S              LS +D      +++   G 
Sbjct: 269 LGGAHRNPEAMAASLKAQLLADLADLDVLSTEDLKNRRYQRLMSYGY 315


>d1owfb_ a.55.1.1 (B:) Integration host factor beta subunit (IHFB)
           {Escherichia coli [TaxId: 562]}
          Length = 94

 Score = 26.8 bits (59), Expect = 5.5
 Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 360 KSDLISALSSKESMF-KKTSDNLLQYVCGKRAEAIASRRKL 399
           KS+LI  L++++S    KT ++ ++ +    A  +A   ++
Sbjct: 3   KSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERI 43



 Score = 26.8 bits (59), Expect = 5.5
 Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 718 KSDLISALSSKESMF-KKTSDNLLQYVCGKRAEAIASRRKL 757
           KS+LI  L++++S    KT ++ ++ +    A  +A   ++
Sbjct: 3   KSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERI 43


>d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]}
          Length = 94

 Score = 26.3 bits (58), Expect = 8.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 360 KSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKL 399
           K +L+ A++ K S+ KK +D +L        EA++S  K+
Sbjct: 3   KGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKV 42



 Score = 26.3 bits (58), Expect = 8.0
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 718 KSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKL 757
           K +L+ A++ K S+ KK +D +L        EA++S  K+
Sbjct: 3   KGELVDAVAEKASVTKKQADAVLTAALETIIEAVSSGDKV 42


>d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli,
           beta-isoform [TaxId: 562]}
          Length = 90

 Score = 26.0 bits (57), Expect = 8.2
 Identities = 7/40 (17%), Positives = 16/40 (40%)

Query: 360 KSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKL 399
           KS LI  +++   + K  +   L  +     E++     +
Sbjct: 3   KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDV 42



 Score = 26.0 bits (57), Expect = 8.2
 Identities = 7/40 (17%), Positives = 16/40 (40%)

Query: 718 KSDLISALSSKESMFKKTSDNLLQYVCGKRAEAIASRRKL 757
           KS LI  +++   + K  +   L  +     E++     +
Sbjct: 3   KSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDV 42


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,285,430
Number of extensions: 206941
Number of successful extensions: 466
Number of sequences better than 10.0: 1
Number of HSP's gapped: 466
Number of HSP's successfully gapped: 14
Length of query: 1144
Length of database: 2,407,596
Length adjustment: 95
Effective length of query: 1049
Effective length of database: 1,103,246
Effective search space: 1157305054
Effective search space used: 1157305054
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)