BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3202
(219 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 107 bits (267), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 69/218 (31%), Positives = 106/218 (48%), Gaps = 9/218 (4%)
Query: 2 FGIYEVGKQALVSWSTDPSGAIPFYQRVALASIAGACGGLVGTPADMVNVRMQNDVKLPP 61
G+Y+ KQ + T S R+ S GA V P D+V VR Q +
Sbjct: 85 IGLYDSVKQ----FYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGG 140
Query: 62 EQRRNYKHAIDGMIRVYKEEGFKRLYAGASTATSRAILMTVGQLSFYDQVKLGLLSTPYF 121
+R Y+ ++ + +EEG + L+ G S +R ++ +L YD +K LL
Sbjct: 141 GRR--YQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM 198
Query: 122 EDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATPGQFNSM-WALVTYTAKLGPAGFF 180
D+ HF S+ AG T + P+DV+KTR MN+ GQ++S +T K GP F+
Sbjct: 199 TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFY 258
Query: 181 KGYFPAFVRLAPQTILTFVFLEQLR--LNFGFIKEESP 216
KG+ P+F+RL ++ FV EQL+ L + E+P
Sbjct: 259 KGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAP 296
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 79/203 (38%), Gaps = 25/203 (12%)
Query: 32 ASIAGACGGLVGTPADMVNVRMQ----NDVKLPPEQRRNYKHAIDGMIRVYKEEGFKRLY 87
A A L+ P D VR+Q + + Y+ + ++ + + EG + LY
Sbjct: 8 AGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLY 67
Query: 88 AGASTATSRAILMTVGQLSFYDQVKLGLLSTPYFEDNATTH------FLSSLTAGAIATT 141
G R + ++ YD VK F + H L+ T GA+A
Sbjct: 68 NGLVAGLQRQMSFASVRIGLYDSVK-------QFYTKGSEHAGIGSRLLAGSTTGALAVA 120
Query: 142 MTQPLDVLKTR---AMNATPGQF--NSMWALVTYTAKLGPAGFFKGYFPAFVRLA---PQ 193
+ QP DV+K R A G+ +++ A T + G G +KG P R A
Sbjct: 121 VAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCA 180
Query: 194 TILTFVFLEQLRLNFGFIKEESP 216
++T+ ++ L + ++ P
Sbjct: 181 ELVTYDLIKDTLLKANLMTDDLP 203
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 69/175 (39%), Gaps = 17/175 (9%)
Query: 25 FYQRVALASIAGACGGLVGTPADMVNVRMQNDVKLPPEQRRNYKHAIDGMIRVYKEEGFK 84
F +A AGA P D R+ DV QR + + + +++K +G +
Sbjct: 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQR-EFTGLGNCITKIFKSDGLR 170
Query: 85 RLYAGASTATSRAILMTVGQLSFYDQVKLGLLSTPYFEDNATTHFLSSLTAGAIATTMTQ 144
LY G + + I+ YD K G+L P + ++ + T A+A ++
Sbjct: 171 GLYQGFNVSVQGIIIYRAAYFGVYDTAK-GMLPDPK-NVHIIVSWMIAQTVTAVAGLVSY 228
Query: 145 PLDVLKTRAMNATPGQFNSMWALVTYTAKL----------GPAGFFKGYFPAFVR 189
P D ++ R M Q A + YT + GP FFKG + +R
Sbjct: 229 PFDTVRRRMMM----QSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLR 279
Score = 35.8 bits (81), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 54/138 (39%), Gaps = 9/138 (6%)
Query: 22 AIPFYQRVALASIAGACGGLVGTPADMVNVRMQNDVKLPPEQ---RRNYKHAIDGMIRVY 78
A+ F + +A A P + V + +Q V+ +Q + YK ID ++R+
Sbjct: 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQ--VQHASKQISAEKQYKGIIDCVVRIP 61
Query: 79 KEEGFKRLYAGASTATSRAILMTVGQLSFYDQVKLGLLSTPYFEDNATTHFLSSL----T 134
KE+GF + G R +F D+ K L +F +L
Sbjct: 62 KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGA 121
Query: 135 AGAIATTMTQPLDVLKTR 152
AGA + PLD +TR
Sbjct: 122 AGATSLCFVYPLDFARTR 139
>pdb|4DJI|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJI|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJK|A Chain A, Structure Of Glutamate-Gaba Antiporter Gadc
pdb|4DJK|B Chain B, Structure Of Glutamate-Gaba Antiporter Gadc
Length = 511
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 108 YDQVKLGLLSTPYFEDNATTHFLS--SLTAGAIATTMTQPLDVLKTRAMNATPGQFNSMW 165
Y Q+ +G + YF A ++ L +L I T+ L +L A+ QF
Sbjct: 96 YLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAA-LIILWALALT----QFGG-- 148
Query: 166 ALVTYTAKLGPAGFFKG-YFPAFVRLAPQTI 195
YTA++ GFF G PAF+ +A I
Sbjct: 149 --TKYTARIAKVGFFAGILLPAFILIALAAI 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,420,371
Number of Sequences: 62578
Number of extensions: 242141
Number of successful extensions: 462
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 11
length of query: 219
length of database: 14,973,337
effective HSP length: 95
effective length of query: 124
effective length of database: 9,028,427
effective search space: 1119524948
effective search space used: 1119524948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)