Query psy3202
Match_columns 219
No_of_seqs 108 out of 1301
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 18:58:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3202.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3202hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 5.6E-43 1.9E-47 285.5 20.3 205 1-211 84-289 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.6E-40 5.4E-45 270.3 18.2 204 1-208 87-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 2.8E-38 9.4E-43 257.1 22.1 190 22-211 4-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 9.9E-38 3.4E-42 254.5 20.3 185 27-212 3-196 (303)
5 3tgu_G UQCRQ, mitochondrial ub 72.5 4.8 0.00016 25.2 3.8 42 175-216 33-74 (81)
6 1pp9_G Ubiquinol-cytochrome C 58.2 12 0.0004 23.5 3.5 43 174-216 32-74 (81)
7 1tlq_A Hypothetical protein YP 33.3 24 0.00082 25.7 2.2 23 22-44 139-161 (189)
8 2l5r_A Antimicrobial peptide a 31.6 24 0.00082 16.1 1.3 20 168-187 2-21 (26)
9 3f2e_A SIRV coat protein; four 30.6 47 0.0016 20.4 2.9 33 159-191 6-43 (100)
10 3cx5_H Cytochrome B-C1 complex 17.6 86 0.0029 20.0 2.4 36 175-210 43-78 (93)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5.6e-43 Score=285.53 Aligned_cols=205 Identities=31% Similarity=0.497 Sum_probs=185.0
Q ss_pred CccchHHHHHHhhhhcCCCCCCccHHHHHHHHHHHhHhHhhhcchHHHHHHHHHhcCCCCcccccccccHHHHHHHHHHH
Q psy3202 1 MFGIYEVGKQALVSWSTDPSGAIPFYQRVALASIAGACGGLVGTPADMVNVRMQNDVKLPPEQRRNYKHAIDGMIRVYKE 80 (219)
Q Consensus 1 ~f~~y~~~k~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~P~~~vk~~~q~~~~~~~~~~~~~~~~~~~~~~i~~~ 80 (219)
+|++||.+|+.+.+. .+..+....+++|++|++++.++++|+|++|+|+|++... +....|++.++++++|+++
T Consensus 84 ~f~~ye~~k~~~~~~----~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--~~~~~~~~~~~~~~~i~~~ 157 (303)
T 2lck_A 84 RIGLYDSVKQFYTKG----SEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA--GGGRRYQSTVEAYKTIARE 157 (303)
T ss_dssp TTTHHHHHHHHHSCC----CSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC--CCSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC----CcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc--CCCCCCCCHHHHHHHHHHh
Confidence 589999999988762 1246778999999999999999999999999999998642 1234689999999999999
Q ss_pred hchhhhhccchhhHHHHHHHHHhHHHhHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcCCCC
Q psy3202 81 EGFKRLYAGASTATSRAILMTVGQLSFYDQVKLGLLSTPYFEDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATPGQ 160 (219)
Q Consensus 81 ~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pl~~iktr~q~~~~~~ 160 (219)
||++|||+|+.|.+++.++.++++|.+||.+++.+.+....+++....+++|++||++++++++|+|+||+|||.+....
T Consensus 158 eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~ 237 (303)
T 2lck_A 158 EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQ 237 (303)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSS
T ss_pred cChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999988665444566778999999999999999999999999999998778
Q ss_pred CCcHHHHHHHHHHh-ChhhhhcchHHHHHhHhhHHHHHHHHHHHHHHHhccc
Q psy3202 161 FNSMWALVTYTAKL-GPAGFFKGYFPAFVRLAPQTILTFVFLEQLRLNFGFI 211 (219)
Q Consensus 161 ~~~~~~~~~~i~~~-G~~glyrG~~~~~~r~~~~~~i~~~~y~~~~~~~~~~ 211 (219)
|+++++|+++|+++ |++|||||+.++++|.+|.++++|.+||.+|+.+...
T Consensus 238 y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~ 289 (303)
T 2lck_A 238 YHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAA 289 (303)
T ss_dssp CCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred cCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999 9999999999999999999999999999999988653
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.6e-40 Score=270.29 Aligned_cols=204 Identities=20% Similarity=0.273 Sum_probs=170.1
Q ss_pred CccchHHHHHHhhhhcCCCCC-CccHHHHHHHHHHHhHhHhhhcchHHHHHHHHHhcCCCCcccccccccHHHHHHHHHH
Q psy3202 1 MFGIYEVGKQALVSWSTDPSG-AIPFYQRVALASIAGACGGLVGTPADMVNVRMQNDVKLPPEQRRNYKHAIDGMIRVYK 79 (219)
Q Consensus 1 ~f~~y~~~k~~~~~~~~~~~~-~~~~~~~~~~g~~a~~~~~~i~~P~~~vk~~~q~~~~~~~~~~~~~~~~~~~~~~i~~ 79 (219)
+|++||.+|+.+....++... ..+.+..+++|++|++++.++++|+|++|+|+|++.... +....|++++++++++++
T Consensus 87 ~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~-~~~~~~~~~~~~~~~i~~ 165 (297)
T 1okc_A 87 NFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG-AAQREFTGLGNCITKIFK 165 (297)
T ss_dssp HHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSS-TTTCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCC-CcCcCCCCHHHHHHHHHH
Confidence 478999999965431111111 124567899999999999999999999999999985321 223468999999999999
Q ss_pred HhchhhhhccchhhHHHHHHHHHhHHHhHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcCC-
Q psy3202 80 EEGFKRLYAGASTATSRAILMTVGQLSFYDQVKLGLLSTPYFEDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATP- 158 (219)
Q Consensus 80 ~~G~~~ly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pl~~iktr~q~~~~- 158 (219)
+||++|||+|+.|.+++.++.++++|.+||.+++.+.+. .+.+....+++|.+||++++++++|+|+||+|||++..
T Consensus 166 ~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~--~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~ 243 (297)
T 1okc_A 166 SDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP--KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGR 243 (297)
T ss_dssp HHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTC
T ss_pred hccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC--CCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCC
Confidence 999999999999999999999999999999999976432 24566778999999999999999999999999999853
Q ss_pred ----CCCCcHHHHHHHHHHh-ChhhhhcchHHHHHhHhhHHHHHHHHHHHHHHHh
Q psy3202 159 ----GQFNSMWALVTYTAKL-GPAGFFKGYFPAFVRLAPQTILTFVFLEQLRLNF 208 (219)
Q Consensus 159 ----~~~~~~~~~~~~i~~~-G~~glyrG~~~~~~r~~~~~~i~~~~y~~~~~~~ 208 (219)
..|+++++|+++|+++ |++|||||+.++++|. +.+++.|.+||.+|+.+
T Consensus 244 ~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 244 KGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp CGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred CCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 3689999999999999 9999999999999996 57899999999998753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.8e-38 Score=257.09 Aligned_cols=190 Identities=20% Similarity=0.246 Sum_probs=166.2
Q ss_pred CccHHHHHHHHHHHhHhHhhhcchHHHHHHHHHhcCCCC-cccccccccHHHHHHHHHHHhchhhhhccchhhHHHHHHH
Q psy3202 22 AIPFYQRVALASIAGACGGLVGTPADMVNVRMQNDVKLP-PEQRRNYKHAIDGMIRVYKEEGFKRLYAGASTATSRAILM 100 (219)
Q Consensus 22 ~~~~~~~~~~g~~a~~~~~~i~~P~~~vk~~~q~~~~~~-~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~ 100 (219)
..+.+..+++|++|++++.++.+|+|++|+|+|++.... ......|++.++++++++++||++|||+|+.+.+++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 346778999999999999999999999999999986421 1223468999999999999999999999999999999999
Q ss_pred HHhHHHhHHHHHHhhccC-CCCCC---chHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcCC-----CCCCcHHHHHHHH
Q psy3202 101 TVGQLSFYDQVKLGLLST-PYFED---NATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATP-----GQFNSMWALVTYT 171 (219)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~g~~ag~~~~~~~~Pl~~iktr~q~~~~-----~~~~~~~~~~~~i 171 (219)
++++|.+||.+++.+... ...+. +....+++|++||++++++++|+|+||+|+|++.. ..|++++++++++
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH
Confidence 999999999999954332 21121 34668999999999999999999999999999853 4689999999999
Q ss_pred HHh-ChhhhhcchHHHHHhHhhHHHHHHHHHHHHHHHhccc
Q psy3202 172 AKL-GPAGFFKGYFPAFVRLAPQTILTFVFLEQLRLNFGFI 211 (219)
Q Consensus 172 ~~~-G~~glyrG~~~~~~r~~~~~~i~~~~y~~~~~~~~~~ 211 (219)
+++ |++|||||+.++++|.+|.++++|.+||.+|+.+.+.
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999 9999999999999999999999999999999987543
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=9.9e-38 Score=254.51 Aligned_cols=185 Identities=22% Similarity=0.293 Sum_probs=166.4
Q ss_pred HHHHHHHHHhHhHhhhcchHHHHHHHHHhcCCCCc----ccccccccHHHHHHHHHHHhchhhhhccchhhHHHHHHHHH
Q psy3202 27 QRVALASIAGACGGLVGTPADMVNVRMQNDVKLPP----EQRRNYKHAIDGMIRVYKEEGFKRLYAGASTATSRAILMTV 102 (219)
Q Consensus 27 ~~~~~g~~a~~~~~~i~~P~~~vk~~~q~~~~~~~----~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~ 102 (219)
.++++|++|++++.++.+|+|++|+|+|++..... ....+|++.++++++++++||+++||+|+.+.+++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 36899999999999999999999999999865321 11346889999999999999999999999999999999999
Q ss_pred hHHHhHHHHHHhhccCCCCCCchHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcCC----CCCCcHHHHHHHHHHh-Chh
Q psy3202 103 GQLSFYDQVKLGLLSTPYFEDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATP----GQFNSMWALVTYTAKL-GPA 177 (219)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~Pl~~iktr~q~~~~----~~~~~~~~~~~~i~~~-G~~ 177 (219)
++|.+||.+++.+.+... ..+....+++|++||++++++++|+|+||+|+|++.. ..|+++++++++|+++ |++
T Consensus 83 i~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~ 161 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIR 161 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChh
Confidence 999999999998865422 4667889999999999999999999999999999863 3689999999999999 999
Q ss_pred hhhcchHHHHHhHhhHHHHHHHHHHHHHHHhcccc
Q psy3202 178 GFFKGYFPAFVRLAPQTILTFVFLEQLRLNFGFIK 212 (219)
Q Consensus 178 glyrG~~~~~~r~~~~~~i~~~~y~~~~~~~~~~~ 212 (219)
|||||+.++++|.+|.++++|.+||.+|+.+.+..
T Consensus 162 glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred hhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999987543
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=72.51 E-value=4.8 Score=25.24 Aligned_cols=42 Identities=12% Similarity=0.305 Sum_probs=34.5
Q ss_pred ChhhhhcchHHHHHhHhhHHHHHHHHHHHHHHHhccccccCC
Q psy3202 175 GPAGFFKGYFPAFVRLAPQTILTFVFLEQLRLNFGFIKEESP 216 (219)
Q Consensus 175 G~~glyrG~~~~~~r~~~~~~i~~~~y~~~~~~~~~~~~~~~ 216 (219)
|+...+|-+...++..+|...+.+.+|+..++.-.....++|
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKnp 74 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNP 74 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCG
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 666777777888999999999999999999988766666655
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=58.18 E-value=12 Score=23.46 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=34.6
Q ss_pred hChhhhhcchHHHHHhHhhHHHHHHHHHHHHHHHhccccccCC
Q psy3202 174 LGPAGFFKGYFPAFVRLAPQTILTFVFLEQLRLNFGFIKEESP 216 (219)
Q Consensus 174 ~G~~glyrG~~~~~~r~~~~~~i~~~~y~~~~~~~~~~~~~~~ 216 (219)
+|+...+|-+...++..+|...+.+.+|+..++.-.....++|
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKnp 74 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNP 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3566677777778889999999999999999988766666665
No 7
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519 protein structure initiative, NEW YORK SGX research center structural genomics; 2.40A {Bacillus subtilis} SCOP: a.195.1.1
Probab=33.29 E-value=24 Score=25.72 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=19.1
Q ss_pred CccHHHHHHHHHHHhHhHhhhcc
Q psy3202 22 AIPFYQRVALASIAGACGGLVGT 44 (219)
Q Consensus 22 ~~~~~~~~~~g~~a~~~~~~i~~ 44 (219)
-++++..+++|.+|++++.+.-.
T Consensus 139 v~tFLDDiVgaiaAaaaSRlah~ 161 (189)
T 1tlq_A 139 IHTFLDDIVAALAAAAASRIAHT 161 (189)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHTH
T ss_pred ccccHHHHHHHHHHHHHHHHHhh
Confidence 57889999999999998887643
No 8
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=31.60 E-value=24 Score=16.11 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=13.1
Q ss_pred HHHHHHhChhhhhcchHHHH
Q psy3202 168 VTYTAKLGPAGFFKGYFPAF 187 (219)
Q Consensus 168 ~~~i~~~G~~glyrG~~~~~ 187 (219)
+++|++.|+..+.+|..+.+
T Consensus 2 lkeifkaglgslvkgiaahv 21 (26)
T 2l5r_A 2 LKEIFKAGLGSLVKGIAAHV 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 45666667777777766554
No 9
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=30.57 E-value=47 Score=20.42 Aligned_cols=33 Identities=15% Similarity=0.243 Sum_probs=22.7
Q ss_pred CCCCcHHHHHHHHHHh-Chh----hhhcchHHHHHhHh
Q psy3202 159 GQFNSMWALVTYTAKL-GPA----GFFKGYFPAFVRLA 191 (219)
Q Consensus 159 ~~~~~~~~~~~~i~~~-G~~----glyrG~~~~~~r~~ 191 (219)
+++.++.+-+..++.+ |+. .+|.|++..+.|..
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 4667777777777777 764 47888888776654
No 10
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=17.62 E-value=86 Score=20.03 Aligned_cols=36 Identities=8% Similarity=0.082 Sum_probs=30.0
Q ss_pred ChhhhhcchHHHHHhHhhHHHHHHHHHHHHHHHhcc
Q psy3202 175 GPAGFFKGYFPAFVRLAPQTILTFVFLEQLRLNFGF 210 (219)
Q Consensus 175 G~~glyrG~~~~~~r~~~~~~i~~~~y~~~~~~~~~ 210 (219)
|+...+|-+...++..+|...+.+.+|+..++.-..
T Consensus 43 ~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~ 78 (93)
T 3cx5_H 43 AVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEF 78 (93)
T ss_dssp TSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHH
Confidence 677788888888899999999999999988876543
Done!