RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3202
(219 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 75.0 bits (185), Expect = 7e-18
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 21 GAIPFYQRVALASIAGACGGLVGTPADMVNVRMQNDVKLPPEQRRNYKHAIDGMIRVYKE 80
+ F + IAGA V P D+V R+Q R YK +D ++YKE
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQ---SSAAGGSRKYKGILDCFKKIYKE 57
Query: 81 EGFKRLYAGASTATSRAILMTVGQLSFYDQVKLGLLS 117
EG + LY G R Y+ +K LL
Sbjct: 58 EGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLK 94
Score = 70.0 bits (172), Expect = 7e-16
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 128 HFLSSLTAGAIATTMTQPLDVLKTRAMNATPG---QFNSMWALVTYTAKL-GPAGFFKGY 183
L+ AGAIA T+T PLDV+KTR ++ G ++ + K G G +KG
Sbjct: 8 SLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGL 67
Query: 184 FPAFVRLAPQTILTFVFLEQLRLNFGFIK 212
P +R+AP + F E L+
Sbjct: 68 LPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 42.8 bits (101), Expect = 5e-05
Identities = 41/192 (21%), Positives = 71/192 (36%), Gaps = 19/192 (9%)
Query: 25 FYQRVALASIAGACGGLVGTPADMVNVRMQNDVKLPPEQRRNYKHAIDGMIRVYKEEGFK 84
F + +AGA L+ P D R+ +D+ R + D ++++ K+ GF
Sbjct: 113 FGVNILSGGLAGASSLLIVYPLDFARTRLASDIG--KGGDREFTGLFDCLMKISKQTGFL 170
Query: 85 RLYAGASTATSRAILMTVGQLSFYDQVKLGLLSTPYFEDNATTHFLSSLTAGAIATTM-- 142
LY G + I+ YD K F ++ T+ L T +
Sbjct: 171 SLYQGFGVSVQGIIVYRGAYFGLYDSAK-----ALLFGNDKNTNILYKWAVAQTVTILAG 225
Query: 143 --TQPLDVLKTRAMNATPGQ-------FNSMWALVTYTAKLGPAGFFKGYFPAFVRLAPQ 193
+ P D ++ R M + + ++ G GFFKG + +R A
Sbjct: 226 LISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLRGAGG 285
Query: 194 TILTFVFLEQLR 205
L VF ++L+
Sbjct: 286 A-LVLVFYDELQ 296
Score = 34.7 bits (80), Expect = 0.023
Identities = 28/113 (24%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 2 FGIYEVGKQALVSWSTDPSGAIPFYQRVALASIAGACGGLVGTPADMVNVRMQNDVKLPP 61
FG+Y+ K L + Y + A+A GL+ P D V RM
Sbjct: 191 FGLYDSAKALLF---GNDKNTNILY-KWAVAQTVTILAGLISYPFDTVRRRMMMMSGRKA 246
Query: 62 EQRRNYKHAIDGMIRVYKEEGFKRLYAGASTATSRAILMTVGQLS--FYDQVK 112
+ Y +D ++ K EG + GA R G L FYD+++
Sbjct: 247 KSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLRG---AGGALVLVFYDELQ 296
Score = 29.0 bits (65), Expect = 1.6
Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 67 YKHAIDGMIRVYKEEGFKRLYAGASTATSRAILMTVGQLSFYDQVKLGLLSTPYFEDNAT 126
Y ++ RV KE+G L+ G + R +F D K P +
Sbjct: 52 YSGIVNCFRRVSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMF---PKYNQKTD 108
Query: 127 ------THFLSSLTAGAIATTMTQPLDVLKTR 152
+ LS AGA + + PLD +TR
Sbjct: 109 FWKFFGVNILSGGLAGASSLLIVYPLDFARTR 140
>gnl|CDD|212010 cd11620, HR1_PKC-like_2_fungi, Second Protein kinase C-related
kinase homology region 1 (HR1) Rho-binding domain of
fungal Protein Kinase C-like proteins. This subfamily
is composed of fungal PKC-like proteins including Pkc1p
from Saccharomyces cerevisiae, and Pck1p and Pck2p from
Schizosaccharomyces pombe. The yeast PKC-like proteins
play a critical role in regulating cell wall
biosynthesis and maintaining cell wall integrity. They
contain two HR1 domains, C2 and C1 domains, and a
kinase domain. This model characterizes the second HR1
domain. HR1 domains are anti-parallel coiled-coil (ACC)
domains that bind small GTPases from the Rho family.
The HR1 domains of Pck1p and Pck2p interact with
GTP-bound Rho1p and Rho2p.
Length = 72
Score = 28.1 bits (63), Expect = 0.75
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 65 RNYKHAIDGMIRVYKEEGFKRLYAGA 90
+ YK I+ M R+Y+ EG KR A A
Sbjct: 22 KQYKEGIEKMARLYQAEGDKRSIADA 47
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 28.0 bits (62), Expect = 3.8
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 8/79 (10%)
Query: 135 AGAIATTMTQPLDVLKTRAMNATPGQFNSMWALVTYTAKLGPAGFFKGYFPAFVRLAPQT 194
AG IA +T P+DV+K+R + S VT A+ G F+KG R +
Sbjct: 189 AGGIAGFLTTPVDVIKSRQIIYG----KSYIETVTEIAEEGYLTFYKG---CCFRSSYLF 241
Query: 195 ILTFVFLEQLRLNFGFIKE 213
+F LR F F KE
Sbjct: 242 FGGLIFFGSLRF-FSFKKE 259
>gnl|CDD|226317 COG3794, PetE, Plastocyanin [Energy production and conversion].
Length = 128
Score = 27.0 bits (60), Expect = 4.6
Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 139 ATTMTQPLDVLKTRAMNATPGQFNSMWA-LVTYTAKLGPAGFFKGYFPAFVRLAPQTILT 197
A L T A A + G + PA V + P +T
Sbjct: 6 AALRRMFLTGGATLAGVVAGAAGPEAAADEEVASVNKGVDIGAMVFEPAEVTVKPGDTVT 65
Query: 198 FVF 200
+V
Sbjct: 66 WVN 68
>gnl|CDD|217038 pfam02445, NadA, Quinolinate synthetase A protein. Quinolinate
synthetase catalyzes the second step of the de novo
biosynthetic pathway of pyridine nucleotide formation.
In particular, quinolinate synthetase is involved in the
condensation of dihydroxyacetone phosphate and
iminoaspartate to form quinolinic acid. This synthesis
requires two enzymes, a FAD-containing "B protein" and
an "A protein".
Length = 296
Score = 27.8 bits (63), Expect = 4.6
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 53 MQNDVKLPPEQRRNYKHAIDGMIRV 77
++N++ +P E R + A++ M+ +
Sbjct: 272 LENEITVPEEIREKARRALERMLEL 296
>gnl|CDD|132708 TIGR03669, urea_ABC_arch, urea ABC transporter, substrate-binding
protein, archaeal type. Members of this protein family
are identified as the substrate-binding protein of a
urea ABC transport system by similarity to a known urea
transporter from Corynebacterium glutamicum, operon
structure, proximity of its operons to urease
(urea-utilization protein) operons, and by Partial
Phylogenetic Profiling vs. urea utilization [Transport
and binding proteins, Amino acids, peptides and amines].
Length = 374
Score = 27.0 bits (60), Expect = 8.7
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 39 GGLVGTPADMVNVRMQNDVKLPPEQRRNYKHAIDGMIRVYKEEGFKRLYAGASTATSRAI 98
GG++G ++++ Q+D + E R R+ + L+AG S+AT AI
Sbjct: 35 GGILGRQIELIDPDPQSDNERYQELTR----------RLLNRDKVDALWAGYSSATREAI 84
Query: 99 LMTVG---QLSFY 108
+ QL FY
Sbjct: 85 RPIIDRNEQLYFY 97
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.135 0.400
Gapped
Lambda K H
0.267 0.0875 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,260,962
Number of extensions: 1040354
Number of successful extensions: 885
Number of sequences better than 10.0: 1
Number of HSP's gapped: 881
Number of HSP's successfully gapped: 18
Length of query: 219
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 126
Effective length of database: 6,812,680
Effective search space: 858397680
Effective search space used: 858397680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.5 bits)