RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3202
(219 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 253 bits (649), Expect = 3e-85
Identities = 67/220 (30%), Positives = 102/220 (46%), Gaps = 9/220 (4%)
Query: 2 FGIYEVGKQALVSWSTDPSGAIPFYQRVALASIAGACGGLVGTPADMVNVRMQNDVKLPP 61
G+Y+ KQ T S R+ S GA V P D+V VR Q +
Sbjct: 85 IGLYDSVKQFY----TKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGG 140
Query: 62 EQRRNYKHAIDGMIRVYKEEGFKRLYAGASTATSRAILMTVGQLSFYDQVKLGLLSTPYF 121
R Y+ ++ + +EEG + L+ G S +R ++ +L YD +K LL
Sbjct: 141 --GRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLM 198
Query: 122 EDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATPGQFNSMWALVTYTAK-LGPAGFF 180
D+ HF S+ AG T + P+DV+KTR MN+ GQ++S + GP F+
Sbjct: 199 TDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFY 258
Query: 181 KGYFPAFVRLAPQTILTFVFLEQLR--LNFGFIKEESPQT 218
KG+ P+F+RL ++ FV EQL+ L + E+P
Sbjct: 259 KGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAPFH 298
Score = 91.6 bits (228), Expect = 2e-22
Identities = 42/173 (24%), Positives = 65/173 (37%), Gaps = 10/173 (5%)
Query: 28 RVALASIAGACGGLVGTPADMVNVRMQ----NDVKLPPEQRRNYKHAIDGMIRVYKEEGF 83
+ A A L+ P D VR+Q + + Y+ + ++ + + EG
Sbjct: 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
Query: 84 KRLYAGASTATSRAILMTVGQLSFYDQVKLGLLSTPYFEDNATTHFLSSLTAGAIATTMT 143
+ LY G R + ++ YD VK + + L+ T GA+A +
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVK-QFYTKGSEHAGIGSRLLAGSTTGALAVAVA 122
Query: 144 QPLDVLKTR--AMNATPGQFN--SMW-ALVTYTAKLGPAGFFKGYFPAFVRLA 191
QP DV+K R A G S A T + G G +KG P R A
Sbjct: 123 QPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNA 175
Score = 75.4 bits (186), Expect = 2e-16
Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 9/128 (7%)
Query: 1 MFGIYEVGKQALVSWSTDPSGAIPFYQRVALASIAGACGGLVGTPADMVNVRMQNDVKLP 60
Y++ K L+ + A AG C ++ +P D+V R N
Sbjct: 181 ELVTYDLIKDTLLKANLMTDD---LPCHFTSAFGAGFCTTVIASPVDVVKTRYMNS---- 233
Query: 61 PEQRRNYKHAIDGMIRVYKEEGFKRLYAGASTATSRAILMTVGQLSFYDQVKLGLLSTPY 120
Y A + + ++EG + Y G + R V Y+Q+K L++
Sbjct: 234 --ALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQ 291
Query: 121 FEDNATTH 128
+ H
Sbjct: 292 SREAPFHH 299
Score = 52.7 bits (127), Expect = 2e-08
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 11/91 (12%)
Query: 126 TTHFLSSLTAGAIATTMTQPLDVLKTR----------AMNATPGQFNSMWALVTYTAKL- 174
T FL + TA IA +T PLD K R A Q+ + + +
Sbjct: 2 TVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTE 61
Query: 175 GPAGFFKGYFPAFVRLAPQTILTFVFLEQLR 205
GP + G R + + ++
Sbjct: 62 GPRSLYNGLVAGLQRQMSFASVRIGLYDSVK 92
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 98.9 bits (247), Expect = 3e-25
Identities = 38/201 (18%), Positives = 69/201 (34%), Gaps = 21/201 (10%)
Query: 21 GAIPFYQRVALASIAGACGGLVGTPADMVNVRMQN-DVKLPPEQRRNYKHAIDGMIRVYK 79
A+ F + +A A P + V + +Q + YK ID ++R+ K
Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPK 62
Query: 80 EEGFKRLYAGAST-----ATSRAILMTVGQLSFYDQVKLGLLSTPYFEDNATTHFLSSL- 133
E+GF + G ++A+ +F D+ K L +F +L
Sbjct: 63 EQGFLSFWRGNLANVIRYFPTQAL-----NFAFKDKYKQIFLGGVDRHKQFWRYFAGNLA 117
Query: 134 ---TAGAIATTMTQPLDVLKTR-----AMNATPGQFNSMW-ALVTYTAKLGPAGFFKGYF 184
AGA + PLD +TR A +F + + G G ++G+
Sbjct: 118 SGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFN 177
Query: 185 PAFVRLAPQTILTFVFLEQLR 205
+ + F + +
Sbjct: 178 VSVQGIIIYRAAYFGVYDTAK 198
Score = 96.6 bits (241), Expect = 3e-24
Identities = 40/215 (18%), Positives = 66/215 (30%), Gaps = 19/215 (8%)
Query: 2 FGIYEVGKQALVS-WSTDPSGAIPFYQRVALASIAGACGGLVGTPADMVNVRMQNDVKLP 60
F + KQ + F +A AGA P D R+ DV
Sbjct: 88 FAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKG 147
Query: 61 PEQRRNYKHAIDGMIRVYKEEGFKRLYAGASTATSRAILMTVGQLSFYDQVKLGLLSTPY 120
QR + + + +++K +G + LY G + + I+ YD K
Sbjct: 148 AAQRE-FTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAK------GM 200
Query: 121 FEDNATTHFLSSLTAGAIATTMTQ----PLDVLKTRAM-----NATPGQFNSMW-ALVTY 170
D H + S T + P D ++ R M +
Sbjct: 201 LPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKI 260
Query: 171 TAKLGPAGFFKGYFPAFVRLAPQTILTFVFLEQLR 205
GP FFKG + +R V ++++
Sbjct: 261 AKDEGPKAFFKGAWSNVLRGMGGAF-VLVLYDEIK 294
Score = 48.4 bits (116), Expect = 4e-07
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 128 HFLSSLTAGAIATTMTQPLDVLKTRAMN-------ATPGQFNSMWALVTYTAKL-GPAGF 179
FL+ A AI+ T P++ +K + Q+ + V K G F
Sbjct: 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 69
Query: 180 FKGYFPAFVRLAPQTILTFVFLEQLRLNFGFIKEESPQ 217
++G +R P L F F ++ + F + Q
Sbjct: 70 WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQ 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 7e-04
Identities = 20/111 (18%), Positives = 37/111 (33%), Gaps = 26/111 (23%)
Query: 74 MIRVYKEEGFKRL---YAGAS----TA-TSRAILMTVGQLSFYDQVKL----GLL---ST 118
K +G +AG S A S A +S V++ G+ +
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAALASLA-----DVMSIESLVEVVFYRGMTMQVAV 1797
Query: 119 PYFEDNATTHFLSSLTAGAIATTMTQ-PLDVLKTRAMNATPGQ-----FNS 163
P E + + + ++ G +A + +Q L + R T +N
Sbjct: 1798 PRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Score = 35.8 bits (82), Expect = 0.009
Identities = 29/172 (16%), Positives = 52/172 (30%), Gaps = 44/172 (25%)
Query: 64 RRNYKHAIDGMIRVYKEEGFKRLYAGASTATSRAILMTVGQLSFYDQVKLGLLSTPYFED 123
+ Y +I ++ L + I + F V L + F++
Sbjct: 1654 KDTYGFSILDIVI----NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 124 NATTHFLSSLT----AGAI-ATTMTQP---------LDVLKTRAMNATPGQFNSMWA--- 166
+S T G + AT TQP + LK++ + ++ +A
Sbjct: 1710 --INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI----PADATFAGHS 1763
Query: 167 LVTYTAKLGPAGFFKGYFPAFVRLAPQTILTFVFLEQLRLNFG-FIKEESPQ 217
L Y A A + V + VF R G ++ P+
Sbjct: 1764 LGEYAALASLADVMS--IESLVEV--------VF---YR---GMTMQVAVPR 1799
Score = 33.5 bits (76), Expect = 0.051
Identities = 24/105 (22%), Positives = 38/105 (36%), Gaps = 24/105 (22%)
Query: 4 IYEVGKQALVSWSTDPSGAIPF-------YQRVALASIAGACGGL-VGTPADMVNVR--- 52
+E L S P+ A F Y ALAS+A + + + ++V R
Sbjct: 1743 AFED----LKSKGLIPADAT-FAGHSLGEY--AALASLADV---MSIESLVEVVFYRGMT 1792
Query: 53 MQNDVKLPPEQRRNYK-HAIDG--MIRVYKEEGFKRLYAGASTAT 94
MQ V R NY AI+ + + +E + + T
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRT 1837
Score = 30.4 bits (68), Expect = 0.47
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 27/119 (22%)
Query: 40 GLVGTPADMVNVRMQNDVKLPPEQRRNYKHAIDGMIRVYKEEGFKRLYAGASTATSRAIL 99
LVG + ++ + + + ++ S + L
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN----------ILEWLENPSNTPDKDYL 231
Query: 100 MTVG---------QLSFYDQV--KLGLLSTP-YFEDN---ATTHFLSSLTAGAIATTMT 143
+++ QL+ Y LG TP AT H +TA AIA T +
Sbjct: 232 LSIPISCPLIGVIQLAHYVVTAKLLGF--TPGELRSYLKGATGHSQGLVTAVAIAETDS 288
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.010
Identities = 25/136 (18%), Positives = 39/136 (28%), Gaps = 42/136 (30%)
Query: 54 QNDVKLPPEQRRNY------KHAIDGMIRVYKEEGFKRLY------------AGASTATS 95
+D L P Y H + + + F+ ++ + S
Sbjct: 461 SDD--LIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 96 RAILMTVGQLSFYDQVKLGLLSTPYFEDNATT---------HFLSSLTAGAIATTMTQPL 146
+IL T+ QL FY Y DN FL + I + T
Sbjct: 518 GSILNTLQQLKFYKP---------YICDNDPKYERLVNAILDFLPKIEENLICSKYT--- 565
Query: 147 DVLKTRAMNATPGQFN 162
D+L+ M F
Sbjct: 566 DLLRIALMAEDEAIFE 581
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.42
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 68 KHAIDGMIRVYKEEGFKRLYAGASTATSRAILMTV 102
K A+ K + +LYA +A + AI T+
Sbjct: 19 KQALK------KLQASLKLYA-DDSAPALAIKATM 46
>2vec_A YHAK, pirin-like protein YHAK; ROS, bicupin, sulfenic acid,
reactive cysteine, cytosolic protein; 1.85A {Escherichia
coli}
Length = 256
Score = 28.0 bits (62), Expect = 2.1
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 11/71 (15%)
Query: 18 DPSGAIPFYQRVA--------LASIAGACGGL-VGTPADMVNVRMQND--VKLPPEQRRN 66
P P Q++A +AS GA G L + + ++ + R
Sbjct: 145 CPQRENPLIQKLALNMGKQQLIASPEGAMGSLQLRQQVWLHHIVLDKGESANFQLHGPRA 204
Query: 67 YKHAIDGMIRV 77
Y +I G
Sbjct: 205 YLQSIHGKFHA 215
>1yvk_A Hypothetical protein BSU33890; ALPHS-beta protein, structural
genomics, PSI, protein structure initiative; HET: COA;
3.01A {Bacillus subtilis subsp} SCOP: d.108.1.1
Length = 163
Score = 27.0 bits (60), Expect = 3.4
Identities = 11/70 (15%), Positives = 22/70 (31%), Gaps = 14/70 (20%)
Query: 60 PPEQRRNY-KHAIDGMIRVYKEEGFKRLYAGASTATSRAILMTVGQLSFYDQVKLGLLST 118
Q++ + K + I K+ G + G ++ + S Y K G
Sbjct: 73 ESLQKKGFGKQLVLDAIEKAKKLGADTIEIGTGNSSIHQL-------SLYQ--KCGFRIQ 123
Query: 119 P----YFEDN 124
+F +
Sbjct: 124 AIDHDFFLRH 133
>2drw_A DAA, D-amino acid amidase; penicillin recognizing protein,
D-stereospecific, hydrophobic, hydrolase; 2.10A
{Ochrobactrum anthropi} SCOP: e.3.1.1 PDB: 2dns_A
2efu_A* 2efx_A*
Length = 363
Score = 27.4 bits (61), Expect = 4.3
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 13 VSWSTDPSGAIPFYQRVALASIAGACGGLVGTPADMVN-VRMQNDVK-LPPEQRR 65
VS + DP + S A A G +V TP D+V + D + L ++
Sbjct: 217 VSGAGDPVDGVWDSTEWFPLSGANAAGDMVSTPRDIVKFLNALFDGRILDQKRLW 271
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.400
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,326,046
Number of extensions: 193503
Number of successful extensions: 391
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 26
Length of query: 219
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 129
Effective length of database: 4,188,903
Effective search space: 540368487
Effective search space used: 540368487
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.1 bits)