RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3202
         (219 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 62.8 bits (151), Expect = 2e-12
 Identities = 37/196 (18%), Positives = 67/196 (34%), Gaps = 10/196 (5%)

Query: 15  WSTDPSGAIPFYQRVALASIAGACGGLVGTPADMVNVRMQNDVKLPPEQRRNYKHAIDGM 74
                     F   +A    AGA       P D    R+  DV      +R +    + +
Sbjct: 101 VDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVG-KGAAQREFTGLGNCI 159

Query: 75  IRVYKEEGFKRLYAGASTATSRAILMTVGQLSFYDQVKLGLLSTPYFEDNATTHFLSSLT 134
            +++K +G + LY G + +    I+        YD  K   +       +    ++ + T
Sbjct: 160 TKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKG--MLPDPKNVHIIVSWMIAQT 217

Query: 135 AGAIATTMTQPLDVLKTRAMN-----ATPGQFNSMWALVTYTAK-LGPAGFFKGYFPAFV 188
             A+A  ++ P D ++ R M           +          AK  GP  FFKG +   +
Sbjct: 218 VTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVL 277

Query: 189 RLAPQTILTFVFLEQL 204
           R         V  +++
Sbjct: 278 RGMGGAF-VLVLYDEI 292



 Score = 60.9 bits (146), Expect = 9e-12
 Identities = 35/183 (19%), Positives = 58/183 (31%), Gaps = 11/183 (6%)

Query: 22  AIPFYQRVALASIAGACGGLVGTPADMVNVRMQNDVKLPPE-QRRNYKHAIDGMIRVYKE 80
           A+ F +      +A A       P + V + +Q           + YK  ID ++R+ KE
Sbjct: 3   ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKE 62

Query: 81  EGFKRLYAGASTATSRAILMTVGQLSFYDQVKLGLLSTPYFEDNATTHFL----SSLTAG 136
           +GF   + G      R         +F D+ K   L           +F     S   AG
Sbjct: 63  QGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAG 122

Query: 137 AIATTMTQPLDVLKTRAMNAT------PGQFNSMWALVTYTAKLGPAGFFKGYFPAFVRL 190
           A +     PLD  +TR                    +       G  G ++G+  +   +
Sbjct: 123 ATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 182

Query: 191 APQ 193
              
Sbjct: 183 IIY 185


>d2znca_ b.74.1.1 (A:) Carbonic anhydrase {Mouse (Mus musculus),
          isozyme IV [TaxId: 10090]}
          Length = 258

 Score = 27.1 bits (59), Expect = 1.4
 Identities = 12/62 (19%), Positives = 21/62 (33%)

Query: 15 WSTDPSGAIPFYQRVALASIAGACGGLVGTPADMVNVRMQNDVKLPPEQRRNYKHAIDGM 74
          W  +     P    +      GAC     +P ++V  R + + +L P     Y       
Sbjct: 1  WCYEIQTEDPRSSCLGPEKWPGACKENQQSPINIVTARTKVNPRLTPFILVGYDQKQQWP 60

Query: 75 IR 76
          I+
Sbjct: 61 IK 62


>d1jd0a_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
          isozyme XII [TaxId: 9606]}
          Length = 260

 Score = 27.1 bits (59), Expect = 1.5
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 37 ACGGLVGTPADMVNVRMQNDVKLPPEQRRNYKHAIDGMIRV 77
          +CGGL+ +P D+ +  +Q D  L P + + Y  + +    +
Sbjct: 19 SCGGLLQSPIDLHSDILQYDASLTPLEFQGYNLSANKQFLL 59


>d1wzua1 c.145.1.1 (A:1-298) Quinolinate synthetase A, NadA
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 298

 Score = 26.9 bits (59), Expect = 2.0
 Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 44  TPADMVNV--RMQNDVKLPPEQRRNYKHAIDGMIRV 77
           T  ++      M+  V++P E  R  + AI+ M+ +
Sbjct: 263 TLKNIYESLKDMKYKVEVPEEIARKARKAIERMLEM 298


>d1g5za_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme disease
           spirochete (Borrelia burgdorferi), different strains
           [TaxId: 139]}
          Length = 164

 Score = 26.2 bits (58), Expect = 2.7
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 132 SLTAGA--IATTMTQPLDVLKTRAMNA 156
           SL +GA  I+  + + L+VLK   +  
Sbjct: 56  SLLSGAYAISDLIAEKLNVLKNEELKE 82


>d1znca_ b.74.1.1 (A:) Carbonic anhydrase {Human (Homo sapiens),
          isozyme IV [TaxId: 9606]}
          Length = 262

 Score = 25.6 bits (55), Expect = 5.1
 Identities = 8/41 (19%), Positives = 14/41 (34%)

Query: 35 AGACGGLVGTPADMVNVRMQNDVKLPPEQRRNYKHAIDGMI 75
           G C     +P ++V  + + D KL       Y       +
Sbjct: 21 GGNCQKDRQSPINIVTTKAKVDKKLGRFFFSGYDKKQTWTV 61


>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus
           halodurans [TaxId: 86665]}
          Length = 138

 Score = 24.8 bits (53), Expect = 5.8
 Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 7/65 (10%)

Query: 142 MTQPLDVLKTRAMNATPGQFNSMWALVTYTAKLG----PAGFFKGYFPAFVRLAPQTILT 197
           MT+  D+ K    NA   +   +W  V+ +  L                F   +P     
Sbjct: 1   MTRLPDIKKEVRFNAPIEK---VWEAVSTSEGLAFWFMENDLKAETGHHFHLQSPFGPSP 57

Query: 198 FVFLE 202
               +
Sbjct: 58  CQVTD 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.400 

Gapped
Lambda     K      H
   0.267   0.0469    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 783,920
Number of extensions: 33907
Number of successful extensions: 80
Number of sequences better than 10.0: 1
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 12
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.1 bits)