Query psy3203
Match_columns 110
No_of_seqs 123 out of 1243
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 18:59:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 99.9 9.9E-24 3.4E-28 144.4 7.8 99 3-101 189-288 (303)
2 2lck_A Mitochondrial uncouplin 99.9 3.3E-21 1.1E-25 131.8 11.6 90 13-102 101-195 (303)
3 1okc_A ADP, ATP carrier protei 99.8 1.2E-20 4.1E-25 128.6 10.2 86 16-101 112-203 (297)
4 1okc_A ADP, ATP carrier protei 99.8 1.2E-20 4E-25 128.7 10.1 86 14-99 5-98 (297)
5 2pso_A STAR-related lipid tran 52.0 9.4 0.00032 24.7 2.4 38 72-110 199-236 (237)
6 3tgu_G UQCRQ, mitochondrial ub 43.8 28 0.00097 18.8 3.1 33 68-100 35-67 (81)
7 1pp9_G Ubiquinol-cytochrome C 39.9 42 0.0014 18.1 3.4 35 66-100 33-67 (81)
8 2acm_A Mucin-1; auto-catalytic 38.8 7.3 0.00025 20.0 0.2 19 53-71 40-59 (66)
9 2l5r_A Antimicrobial peptide a 37.6 10 0.00036 15.4 0.5 20 60-79 3-22 (26)
10 3f2e_A SIRV coat protein; four 24.5 46 0.0016 18.0 1.8 30 51-80 7-41 (100)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.89 E-value=9.9e-24 Score=144.36 Aligned_cols=99 Identities=35% Similarity=0.569 Sum_probs=88.4
Q ss_pred hhccccCCCCCCcHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhcCCCCcCcHHHHHHHHHHh-CchhcccchhhhHhhH
Q psy3203 3 KLGLLSTPYFEDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATPGQFNSMWALVTYTAKL-GPAGFFKGYFPAFVRL 81 (110)
Q Consensus 3 k~~l~~~~~~~~~~~~~~~~g~~a~~~~~~~~~P~d~ik~r~q~~~~~~~~~~~~~~~~i~~~-G~~gly~G~~~~~~~~ 81 (110)
|+.+.+.....++.+..+++|++||++++++++|+|+||+|+|.+....|+++++|+++++++ |++|||||+.|+++|.
T Consensus 189 k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~ 268 (303)
T 2lck_A 189 KDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRL 268 (303)
T ss_dssp HHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHH
T ss_pred HHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHH
Confidence 444544433356778899999999999999999999999999998766799999999999999 9999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcc
Q psy3203 82 APQTILTFVFLEQLRLNFGF 101 (110)
Q Consensus 82 ~~~~~~~~~~ye~~~~~~~~ 101 (110)
+|.++++|.+||.+|+.+..
T Consensus 269 ~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 269 GSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHHHHHHHHSCCCC
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.86 E-value=3.3e-21 Score=131.84 Aligned_cols=90 Identities=23% Similarity=0.290 Sum_probs=83.5
Q ss_pred CCcHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhcCC----CCcCcHHHHHHHHHHh-CchhcccchhhhHhhHhHHHHH
Q psy3203 13 EDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATP----GQFNSMWALVTYTAKL-GPAGFFKGYFPAFVRLAPQTIL 87 (110)
Q Consensus 13 ~~~~~~~~~~g~~a~~~~~~~~~P~d~ik~r~q~~~~----~~~~~~~~~~~~i~~~-G~~gly~G~~~~~~~~~~~~~~ 87 (110)
+.+.+..+++|++||+++.++++|+|+||+|+|.+.. ..|+++++++++++++ |++|||||+.|++++.+|++++
T Consensus 101 ~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 180 (303)
T 2lck_A 101 HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCA 180 (303)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999863 3689999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q psy3203 88 TFVFLEQLRLNFGFI 102 (110)
Q Consensus 88 ~~~~ye~~~~~~~~~ 102 (110)
+|.+||.+|+.+.+.
T Consensus 181 ~f~~ye~~k~~l~~~ 195 (303)
T 2lck_A 181 ELVTYDLIKDTLLKA 195 (303)
T ss_dssp HHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988654
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.84 E-value=1.2e-20 Score=128.64 Aligned_cols=86 Identities=19% Similarity=0.202 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhcCC-----CCcCcHHHHHHHHHHh-CchhcccchhhhHhhHhHHHHHHH
Q psy3203 16 ATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATP-----GQFNSMWALVTYTAKL-GPAGFFKGYFPAFVRLAPQTILTF 89 (110)
Q Consensus 16 ~~~~~~~g~~a~~~~~~~~~P~d~ik~r~q~~~~-----~~~~~~~~~~~~i~~~-G~~gly~G~~~~~~~~~~~~~~~~ 89 (110)
.+..+++|++||+++.++++|+|+||+|+|.+.. ..|+++++++++++++ |++|||||+.|++++.+|+++++|
T Consensus 112 ~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f 191 (297)
T 1okc_A 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYF 191 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999752 3589999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHhcc
Q psy3203 90 VFLEQLRLNFGF 101 (110)
Q Consensus 90 ~~ye~~~~~~~~ 101 (110)
.+||.+|+.+.+
T Consensus 192 ~~ye~~k~~~~~ 203 (297)
T 1okc_A 192 GVYDTAKGMLPD 203 (297)
T ss_dssp HHHHHHHHSSCG
T ss_pred HHHHHHHHHhcc
Confidence 999999997754
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.84 E-value=1.2e-20 Score=128.70 Aligned_cols=86 Identities=23% Similarity=0.356 Sum_probs=79.5
Q ss_pred CcHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHhcCC-------CCcCcHHHHHHHHHHh-CchhcccchhhhHhhHhHHH
Q psy3203 14 DNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATP-------GQFNSMWALVTYTAKL-GPAGFFKGYFPAFVRLAPQT 85 (110)
Q Consensus 14 ~~~~~~~~~g~~a~~~~~~~~~P~d~ik~r~q~~~~-------~~~~~~~~~~~~i~~~-G~~gly~G~~~~~~~~~~~~ 85 (110)
.+.+..+++|++||+++.++++|+|+||+|+|.+.. ..|+++++++++++++ |++|||||+.+.+++.+|.+
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 356789999999999999999999999999999752 2588999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy3203 86 ILTFVFLEQLRLNF 99 (110)
Q Consensus 86 ~~~~~~ye~~~~~~ 99 (110)
+++|.+||.+|+.+
T Consensus 85 ~~~f~~ye~~k~~~ 98 (297)
T 1okc_A 85 ALNFAFKDKYKQIF 98 (297)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999954
No 5
>2pso_A STAR-related lipid transfer protein 13; alpha and beta protein, lipid binding, helix swapping, struc genomics, structural genomics consortium, SGC; 2.80A {Homo sapiens} SCOP: d.129.3.2
Probab=51.98 E-value=9.4 Score=24.68 Aligned_cols=38 Identities=26% Similarity=0.290 Sum_probs=22.2
Q ss_pred cchhhhHhhHhHHHHHHHHHHHHHHHHhcccccCCCCCC
Q psy3203 72 KGYFPAFVRLAPQTILTFVFLEQLRLNFGFIKEESPQTK 110 (110)
Q Consensus 72 ~G~~~~~~~~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~ 110 (110)
+|+.|.++ +....-........+|+.+.....+.|++|
T Consensus 199 ~G~iP~~l-n~~~~~~~~~~l~~LR~~~~~~~~~~~~~~ 236 (237)
T 2pso_A 199 KGHSPEWY-SKGFGHLCAAEVARIRNSFQPLIAEGPETK 236 (237)
T ss_dssp SSSCTTTT-TTHHHHHHHHHHHHHHHTTSCC--------
T ss_pred CCCchHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccC
Confidence 68888887 544455555678889999988888888876
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=43.81 E-value=28 Score=18.83 Aligned_cols=33 Identities=9% Similarity=0.276 Sum_probs=23.9
Q ss_pred hhcccchhhhHhhHhHHHHHHHHHHHHHHHHhc
Q psy3203 68 AGFFKGYFPAFVRLAPQTILTFVFLEQLRLNFG 100 (110)
Q Consensus 68 ~gly~G~~~~~~~~~~~~~~~~~~ye~~~~~~~ 100 (110)
.-.+|-....+...+|..++.+.+|+..++...
T Consensus 35 ~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 35 PNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 334444556677788888999999998888653
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=39.87 E-value=42 Score=18.12 Aligned_cols=35 Identities=14% Similarity=0.248 Sum_probs=25.0
Q ss_pred CchhcccchhhhHhhHhHHHHHHHHHHHHHHHHhc
Q psy3203 66 GPAGFFKGYFPAFVRLAPQTILTFVFLEQLRLNFG 100 (110)
Q Consensus 66 G~~gly~G~~~~~~~~~~~~~~~~~~ye~~~~~~~ 100 (110)
|+.-.+|-....++..+|..++.+.+|+..++...
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e 67 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFE 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHH
Confidence 33444555566666788888999999998888653
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=38.76 E-value=7.3 Score=19.96 Aligned_cols=19 Identities=16% Similarity=0.109 Sum_probs=15.9
Q ss_pred CcHHHHHHHHHHh-Cchhcc
Q psy3203 53 NSMWALVTYTAKL-GPAGFF 71 (110)
Q Consensus 53 ~~~~~~~~~i~~~-G~~gly 71 (110)
+++.+.+.+|+++ |+.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 4788889999998 888876
No 9
>2l5r_A Antimicrobial peptide alyteserin-1C; alpha helix, antimicrobial protein; NMR {Alytes obstetricans}
Probab=37.56 E-value=10 Score=15.37 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=11.9
Q ss_pred HHHHHhCchhcccchhhhHh
Q psy3203 60 TYTAKLGPAGFFKGYFPAFV 79 (110)
Q Consensus 60 ~~i~~~G~~gly~G~~~~~~ 79 (110)
+.+++.|+-.+.+|..+.+.
T Consensus 3 keifkaglgslvkgiaahva 22 (26)
T 2l5r_A 3 KEIFKAGLGSLVKGIAAHVA 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhHHHHHHHHHHHHh
Confidence 34555566667777766543
No 10
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=24.49 E-value=46 Score=17.96 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=17.7
Q ss_pred CcCcHHHHHHHHHHh-Cc----hhcccchhhhHhh
Q psy3203 51 QFNSMWALVTYTAKL-GP----AGFFKGYFPAFVR 80 (110)
Q Consensus 51 ~~~~~~~~~~~i~~~-G~----~gly~G~~~~~~~ 80 (110)
++.+.-+-+..++.+ |+ ++.|+|+.-.+.|
T Consensus 7 kftsvne~vsavltqygvtgpnraiyqgfglkvar 41 (100)
T 3f2e_A 7 KFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVAR 41 (100)
T ss_dssp -CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHH
Confidence 455555556666666 65 4577777765543
Done!