RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy3203
         (110 letters)



>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein. 
          Length = 96

 Score = 68.8 bits (169), Expect = 1e-16
 Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 19  HFLSSLTAGAIATTMTQPLDVLKTRAMNATPG---QFNSMWALVTYTAKL-GPAGFFKGY 74
             L+   AGAIA T+T PLDV+KTR  ++  G   ++  +        K  G  G +KG 
Sbjct: 8   SLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGL 67

Query: 75  FPAFVRLAPQTILTFVFLEQLRLNFGFIK 103
            P  +R+AP   + F   E L+       
Sbjct: 68  LPNLLRVAPAAAIYFGTYETLKKLLLKKL 96


>gnl|CDD|226317 COG3794, PetE, Plastocyanin [Energy production and conversion].
          Length = 128

 Score = 27.0 bits (60), Expect = 1.7
 Identities = 12/63 (19%), Positives = 17/63 (26%), Gaps = 1/63 (1%)

Query: 30 ATTMTQPLDVLKTRAMNATPGQFNSMWA-LVTYTAKLGPAGFFKGYFPAFVRLAPQTILT 88
          A      L    T A            A     +   G       + PA V + P   +T
Sbjct: 6  AALRRMFLTGGATLAGVVAGAAGPEAAADEEVASVNKGVDIGAMVFEPAEVTVKPGDTVT 65

Query: 89 FVF 91
          +V 
Sbjct: 66 WVN 68


>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
          Length = 259

 Score = 26.8 bits (59), Expect = 2.3
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 8/79 (10%)

Query: 26  AGAIATTMTQPLDVLKTRAMNATPGQFNSMWALVTYTAKLGPAGFFKGYFPAFVRLAPQT 85
           AG IA  +T P+DV+K+R +        S    VT  A+ G   F+KG      R +   
Sbjct: 189 AGGIAGFLTTPVDVIKSRQIIYG----KSYIETVTEIAEEGYLTFYKG---CCFRSSYLF 241

Query: 86  ILTFVFLEQLRLNFGFIKE 104
               +F   LR  F F KE
Sbjct: 242 FGGLIFFGSLRF-FSFKKE 259


>gnl|CDD|107369 cd06374, PBP1_mGluR_groupI, Ligand binding domain of the group I
           metabotropic glutamate receptor.  Ligand binding domain
           of the group I metabotropic glutamate receptor, a family
           containing mGlu1R and mGlu5R, all of which stimulate
           phospholipase C (PLC) hydrolysis. The metabotropic
           glutamate receptor is a member of the family C of
           G-protein-coupled receptors that transduce extracellular
           signals into G-protein activation and ultimately into
           intracellular responses. The mGluRs are classified into
           three groups which comprise eight subtypes.
          Length = 472

 Score = 26.4 bits (58), Expect = 3.6
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 36  PLDVLKTRAMNATPGQFNSMWALVTYTAKLGPAGFF--KGYFPAFVRLAPQTILTFVFLE 93
           P D L+ RAM     ++N  W   TY + +   G +   G   AF  LA    L     +
Sbjct: 168 PSDTLQARAMLDIVKRYN--W---TYVSAVHTEGNYGESG-MEAFKELAAHEGLCIAHSD 221

Query: 94  QLRLNFG 100
           ++  N G
Sbjct: 222 KIYSNAG 228


>gnl|CDD|129558 TIGR00466, kdsB, 3-deoxy-D-manno-octulosonate cytidylyltransferase.
            [Cell envelope, Biosynthesis and degradation of surface
           polysaccharides and lipopolysaccharides].
          Length = 238

 Score = 25.3 bits (55), Expect = 7.2
 Identities = 10/36 (27%), Positives = 15/36 (41%)

Query: 61  YTAKLGPAGFFKGYFPAFVRLAPQTILTFVFLEQLR 96
               +G  G+  G+   +V   P  +     LEQLR
Sbjct: 175 LLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQLR 210


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.323    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0767    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,496,033
Number of extensions: 451473
Number of successful extensions: 420
Number of sequences better than 10.0: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 17
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (24.1 bits)