RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3203
(110 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 121 bits (306), Expect = 2e-35
Identities = 38/111 (34%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 2 VKLGLLSTPYFEDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMNATPGQFNSMWALVTY 61
+K LL D+ HF S+ AG T + P+DV+KTR MN+ GQ++S
Sbjct: 188 IKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALT 247
Query: 62 TAK-LGPAGFFKGYFPAFVRLAPQTILTFVFLEQLR--LNFGFIKEESPQT 109
+ GP F+KG+ P+F+RL ++ FV EQL+ L + E+P
Sbjct: 248 MLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAPFH 298
Score = 51.9 bits (125), Expect = 2e-09
Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 11/91 (12%)
Query: 17 TTHFLSSLTAGAIATTMTQPLDVLKTR----------AMNATPGQFNSMWALVTYTAKL- 65
T FL + TA IA +T PLD K R A Q+ + + +
Sbjct: 2 TVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTE 61
Query: 66 GPAGFFKGYFPAFVRLAPQTILTFVFLEQLR 96
GP + G R + + ++
Sbjct: 62 GPRSLYNGLVAGLQRQMSFASVRIGLYDSVK 92
Score = 40.4 bits (95), Expect = 3e-05
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 20 FLSSLTAGAIATTMTQPLDVLKTR--AMNATPGQFN--SMW-ALVTYTAKLGPAGFFKGY 74
L+ T GA+A + QP DV+K R A G S A T + G G +KG
Sbjct: 108 LLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGT 167
Query: 75 FPAFVRLA 82
P R A
Sbjct: 168 SPNVARNA 175
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 55.0 bits (133), Expect = 2e-10
Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 11/97 (11%)
Query: 10 PYFEDNATTHFLSSLTAGAIATTMTQ----PLDVLKTRAM-----NATPGQFNSMW-ALV 59
D H + S T + P D ++ R M +
Sbjct: 199 GMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWR 258
Query: 60 TYTAKLGPAGFFKGYFPAFVRLAPQTILTFVFLEQLR 96
GP FFKG + +R V ++++
Sbjct: 259 KIAKDEGPKAFFKGAWSNVLRGMGGAF-VLVLYDEIK 294
Score = 53.4 bits (129), Expect = 6e-10
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 6/91 (6%)
Query: 12 FEDNATTHFLSSLTAGAIATTMTQPLDVLKTR-----AMNATPGQFNSMW-ALVTYTAKL 65
F + S AGA + PLD +TR A +F + +
Sbjct: 108 FWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSD 167
Query: 66 GPAGFFKGYFPAFVRLAPQTILTFVFLEQLR 96
G G ++G+ + + F + +
Sbjct: 168 GLRGLYQGFNVSVQGIIIYRAAYFGVYDTAK 198
Score = 48.4 bits (116), Expect = 4e-08
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 19 HFLSSLTAGAIATTMTQPLDVLKTRAMN-------ATPGQFNSMWALVTYTAKL-GPAGF 70
FL+ A AI+ T P++ +K + Q+ + V K G F
Sbjct: 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 69
Query: 71 FKGYFPAFVRLAPQTILTFVFLEQLRLNFGFIKEESPQ 108
++G +R P L F F ++ + F + Q
Sbjct: 70 WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQ 107
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.9 bits (64), Expect = 0.33
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 25/93 (26%)
Query: 6 LLSTPYFEDNATTHFLSSLT----AGAI-ATTMTQP---------LDVLKTRAMNATPGQ 51
L + F++ +S T G + AT TQP + LK++ +
Sbjct: 1701 LKTEKIFKE--INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLI----P 1754
Query: 52 FNSMWA---LVTYTAKLGPAGFFKGYFPAFVRL 81
++ +A L Y A A + V +
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMS--IESLVEV 1785
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 2.5
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 5/35 (14%)
Query: 73 GYFPAFV----RLAPQTILTFVFLEQLRLNFGFIK 103
YF + + + +F + L+F F++
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLF-RMVFLDFRFLE 504
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 25.2 bits (55), Expect = 4.9
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 38 DVLKTRAMNATPGQFNSMWALVTYTAKLGPAGFFKGYFPAFVR 80
D+++ + + Q S+ L + + PA G+ +
Sbjct: 356 DIVEKKIR--SSEQLWSLLPLHAVLSSVYPASKVAGHMAGRIN 396
>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel,
beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP:
b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A*
Length = 382
Score = 25.2 bits (56), Expect = 5.5
Identities = 5/31 (16%), Positives = 13/31 (41%), Gaps = 9/31 (29%)
Query: 17 TTHFLSSLTAGAIATTMTQPLDVLKTRAMNA 47
T++L T +T +++K + +
Sbjct: 92 CTNYL--------PTLITTSDELMK-QGVRV 113
>3iv8_A N-acetylglucosamine-6-phosphate deacetylase; IDP01334, fruct
phosphate, carbohydrate metabolism, hydrolase; HET: F6P;
2.53A {Vibrio cholerae} PDB: 3egj_A*
Length = 381
Score = 25.2 bits (56), Expect = 5.7
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 9/31 (29%)
Query: 17 TTHFLSSLTAGAIATTMTQPLDVLKTRAMNA 47
T FL T +T + ++ +A+ A
Sbjct: 92 CTSFL--------PTLITSSDENMR-QAIAA 113
>1dqu_A Isocitrate lyase; beta barrel; 2.80A {Emericella nidulans} SCOP:
c.1.12.7
Length = 538
Score = 24.9 bits (53), Expect = 8.9
Identities = 7/29 (24%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 9 TPYFED--NATTHFLSSLTAGAIATTMTQ 35
Y ++ T +SS A T Q
Sbjct: 507 ANYVDNMLKMITGGVSSTAAMGKGVTEDQ 535
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.135 0.401
Gapped
Lambda K H
0.267 0.0823 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,565,765
Number of extensions: 77595
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 15
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.2 bits)