RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3203
         (110 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 40.9 bits (94), Expect = 7e-06
 Identities = 17/91 (18%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 11  YFEDNATTHFLSSLTAGAIATTMTQPLDVLKTRAMN-----ATPGQFNSMWALVTYTAK- 64
               +    ++ + T  A+A  ++ P D ++ R M           +          AK 
Sbjct: 203 PKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKD 262

Query: 65  LGPAGFFKGYFPAFVRLAPQTILTFVFLEQL 95
            GP  FFKG +   +R         V  +++
Sbjct: 263 EGPKAFFKGAWSNVLRGMGGAF-VLVLYDEI 292



 Score = 39.3 bits (90), Expect = 3e-05
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 19 HFLSSLTAGAIATTMTQPLDVLKTR-------AMNATPGQFNSMWALVTYTAKLGPAGFF 71
           FL+   A AI+ T   P++ +K            +   Q+  +   V    K      F
Sbjct: 9  DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 68

Query: 72 KGYFPAFV 79
               A V
Sbjct: 69 WRGNLANV 76



 Score = 28.1 bits (61), Expect = 0.19
 Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 6/74 (8%)

Query: 17  TTHFLSSLTAGAIATTMTQPLDVLKTRAMNAT------PGQFNSMWALVTYTAKLGPAGF 70
             +  S   AGA +     PLD  +TR                    +       G  G 
Sbjct: 112 AGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGL 171

Query: 71  FKGYFPAFVRLAPQ 84
           ++G+  +   +   
Sbjct: 172 YQGFNVSVQGIIIY 185


>d1g5za_ a.24.12.1 (A:) Outer surface protein C (OspC) {Lyme
          disease spirochete (Borrelia burgdorferi), different
          strains [TaxId: 139]}
          Length = 164

 Score = 25.8 bits (57), Expect = 1.0
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 23 SLTAGA--IATTMTQPLDVLKTRAMNA 47
          SL +GA  I+  + + L+VLK   +  
Sbjct: 56 SLLSGAYAISDLIAEKLNVLKNEELKE 82


>d1xn5a_ d.129.3.5 (A:) Hypothetical protein BH1534 {Bacillus
          halodurans [TaxId: 86665]}
          Length = 138

 Score = 24.1 bits (51), Expect = 4.0
 Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 7/65 (10%)

Query: 33 MTQPLDVLKTRAMNATPGQFNSMWALVTYTAKLG----PAGFFKGYFPAFVRLAPQTILT 88
          MT+  D+ K    NA   +   +W  V+ +  L                F   +P     
Sbjct: 1  MTRLPDIKKEVRFNAPIEK---VWEAVSTSEGLAFWFMENDLKAETGHHFHLQSPFGPSP 57

Query: 89 FVFLE 93
              +
Sbjct: 58 CQVTD 62


>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box
           protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 213

 Score = 24.1 bits (51), Expect = 5.3
 Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 65  LGPA--GFFKG-YFPAFVRLAPQTILTFVFLEQLR 96
           LGPA  G      +P+   +  Q  +   ++ + R
Sbjct: 176 LGPAFRGLKGRTLYPSVSAVWGQCQVRIRYMGERR 210


>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId:
           1172]}
          Length = 105

 Score = 23.3 bits (49), Expect = 5.4
 Identities = 13/50 (26%), Positives = 20/50 (40%)

Query: 60  TYTAKLGPAGFFKGYFPAFVRLAPQTILTFVFLEQLRLNFGFIKEESPQT 109
           TYT KLG       + PA + + P   + F+  +    N  F    +P  
Sbjct: 2   TYTVKLGSDKGLLVFEPAKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAK 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0474    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 369,392
Number of extensions: 13767
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 8
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 47 (22.5 bits)