BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3204
         (264 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZDI|C Chain C, Crystal Structure Of Prefoldin From Pyrococcus Horikoshii
           Ot3
          Length = 151

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 164 LKRAQVKFQDSKESLDKITPSSQGNP-IMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
           L  A+ + Q  +E+L+ +    +  P I+VP+    +++G I D +  ++ +G+G+ VE+
Sbjct: 35  LNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVER 94

Query: 223 SIPDAQDYFKRRV 235
           SI +A  + ++R+
Sbjct: 95  SIDEAISFLEKRL 107


>pdb|1FXK|C Chain C, Crystal Structure Of Archaeal Prefoldin (gimc)
          Length = 133

 Score = 32.7 bits (73), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 11/48 (22%), Positives = 28/48 (58%)

Query: 187 GNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRR 234
           G+  +VP+    +++ ++ D  +V++ +G G  ++K+  DA +  K +
Sbjct: 49  GSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQ 96


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.131    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,873,508
Number of Sequences: 62578
Number of extensions: 269543
Number of successful extensions: 523
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 521
Number of HSP's gapped (non-prelim): 4
length of query: 264
length of database: 14,973,337
effective HSP length: 97
effective length of query: 167
effective length of database: 8,903,271
effective search space: 1486846257
effective search space used: 1486846257
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)