BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3204
(264 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9WU28|PFD5_MOUSE Prefoldin subunit 5 OS=Mus musculus GN=Pfdn5 PE=1 SV=1
Length = 154
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 65/83 (78%)
Query: 164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
LK Q K+ ++K+ L+ + S++G ++VPLT SMYV GK+ D + V+ID+GTG+YVEK+
Sbjct: 36 LKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKT 95
Query: 224 IPDAQDYFKRRVAFVTQQMEKLQ 246
DA+D+FKR++ F+T+QMEK+Q
Sbjct: 96 AEDAKDFFKRKIDFLTKQMEKIQ 118
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 12 QQIDLTKLAFPQLTQLKNQLD-SVSFQALALSAMSVNQS 49
Q I++T+L PQL LKNQLD V F + +++ + V Q+
Sbjct: 3 QSINITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQT 41
>sp|Q99471|PFD5_HUMAN Prefoldin subunit 5 OS=Homo sapiens GN=PFDN5 PE=1 SV=2
Length = 154
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 65/83 (78%)
Query: 164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
LK Q K+ ++K+ L+ + S++G ++VPLT SMYV GK+ D + V+ID+GTG+YVEK+
Sbjct: 36 LKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKT 95
Query: 224 IPDAQDYFKRRVAFVTQQMEKLQ 246
DA+D+FKR++ F+T+QMEK+Q
Sbjct: 96 AEDAKDFFKRKIDFLTKQMEKIQ 118
Score = 32.0 bits (71), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 12 QQIDLTKLAFPQLTQLKNQLD-SVSFQALALSAMSVNQS 49
Q I++T+L PQL LKNQLD V F + +++ + V Q+
Sbjct: 3 QSINITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQT 41
>sp|Q5RAY0|PFD5_PONAB Prefoldin subunit 5 OS=Pongo abelii GN=PFDN5 PE=2 SV=1
Length = 154
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 65/83 (78%)
Query: 164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
LK Q K+ ++K+ L+ + S++G ++VPLT SMYV GK+ D + V+ID+GTG+YVEK+
Sbjct: 36 LKVVQTKYVEAKDCLNVLNKSNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKT 95
Query: 224 IPDAQDYFKRRVAFVTQQMEKLQ 246
DA+D+FKR++ F+T+QMEK+Q
Sbjct: 96 AEDAKDFFKRKIDFLTKQMEKIQ 118
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 12 QQIDLTKLAFPQLTQLKNQLD-SVSFQALALSAMSVNQS 49
Q I++T+L PQL LKNQLD V F + +++ + V Q+
Sbjct: 3 QSINITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQT 41
>sp|Q8HYI9|PFD5_BOVIN Prefoldin subunit 5 OS=Bos taurus GN=PFDN5 PE=2 SV=1
Length = 154
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 41/83 (49%), Positives = 65/83 (78%)
Query: 164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
LK Q K+ ++K+ L+ + +++G ++VPLT SMYV GK+ D + V+ID+GTG+YVEK+
Sbjct: 36 LKVVQTKYVEAKDCLNVLKKNNEGKELLVPLTSSMYVPGKLHDVEHVLIDVGTGYYVEKT 95
Query: 224 IPDAQDYFKRRVAFVTQQMEKLQ 246
DA+D+FKR++ F+T+QMEK+Q
Sbjct: 96 AEDAKDFFKRKIDFLTKQMEKIQ 118
Score = 31.6 bits (70), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 12 QQIDLTKLAFPQLTQLKNQLD-SVSFQALALSAMSVNQS 49
Q +++T+L PQL LKNQLD V F + +++ + V Q+
Sbjct: 3 QSVNITELNLPQLEMLKNQLDQEVEFLSTSIAQLKVVQT 41
>sp|Q9VCZ8|PFD5_DROME Probable prefoldin subunit 5 OS=Drosophila melanogaster GN=CG7048
PE=2 SV=1
Length = 168
Score = 94.4 bits (233), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 64/93 (68%)
Query: 168 QVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDA 227
Q K+ SKE+L P+ + I+VPLT SMYV G++ D ++ VIDIGTG+Y+EK + +
Sbjct: 49 QAKYAGSKEALGTFQPNWENRQILVPLTSSMYVPGRVKDLNRFVIDIGTGYYIEKDLEGS 108
Query: 228 QDYFKRRVAFVTQQMEKLQFIFLLYILIFCSLI 260
+DYFKRRV +V +Q+EK++ I L + S++
Sbjct: 109 KDYFKRRVEYVQEQIEKIEKIHLQKTRFYNSVM 141
>sp|O94307|PFD5_SCHPO Probable prefoldin subunit 5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=bob1 PE=1 SV=1
Length = 154
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 58/86 (67%), Gaps = 2/86 (2%)
Query: 162 GALKRAQVKFQDSKESL-DKITPSSQGNPIMVPLTDSMYVEGKIADAD-KVVIDIGTGFY 219
G L RAQ+KF++ ++ D + + G ++VPLT S+YV GK+ + K+++DIGTG+Y
Sbjct: 37 GQLGRAQLKFRECLANVNDAVRAENDGKEVLVPLTSSLYVPGKLNLGNSKLLVDIGTGYY 96
Query: 220 VEKSIPDAQDYFKRRVAFVTQQMEKL 245
VEKS +A +Y+KR+ ++ +E L
Sbjct: 97 VEKSAGEATEYYKRKCEYLASSIENL 122
>sp|Q54V55|PFD5_DICDI Probable prefoldin subunit 5 OS=Dictyostelium discoideum GN=pfdn5
PE=3 SV=1
Length = 160
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/83 (40%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
LK A K+ ++KE++ + + G ++VPLT S+Y+ GKI +KV++DIGTG+YVE
Sbjct: 40 LKHASNKYIEAKEAMGGL-KGTDGKDMLVPLTSSIYLPGKINSNEKVLVDIGTGYYVEMG 98
Query: 224 IPDAQDYFKRRVAFVTQQMEKLQ 246
I Q++ R+V +T+Q+ K+Q
Sbjct: 99 IEQGQNFSNRKVQLITEQVNKVQ 121
>sp|P57742|PFD5_ARATH Probable prefoldin subunit 5 OS=Arabidopsis thaliana GN=At5g23290
PE=1 SV=1
Length = 151
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 56/82 (68%)
Query: 164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
++ A V+ + +L+ ++ QG ++VPLT S+YV G + +ADKV++DIGTG+++EK+
Sbjct: 39 IRTATVRLDAAAAALNDLSLRPQGKKMLVPLTASLYVPGTLDEADKVLVDIGTGYFIEKT 98
Query: 224 IPDAQDYFKRRVAFVTQQMEKL 245
+ D +DY +R++ + ++L
Sbjct: 99 MDDGKDYCQRKINLLKSNFDQL 120
>sp|Q21993|PFD5_CAEEL Probable prefoldin subunit 5 OS=Caenorhabditis elegans GN=pfd-5
PE=2 SV=1
Length = 152
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 15/122 (12%)
Query: 143 ELPSAVPLCGGTLRR---------------QPNNGALKRAQVKFQDSKESLDKITPSSQG 187
E P VPL +L++ Q + ALK + + S +LD + ++ G
Sbjct: 3 EEPKGVPLSELSLQQLGELQKNCEQELNFFQESFNALKGLLTRNEKSISALDDVKIATAG 62
Query: 188 NPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQF 247
+ ++PL++S+Y+ +++D K +++IGTG++VE A+ F R+ +T+Q+E ++
Sbjct: 63 HTALIPLSESLYIRAELSDPSKHLVEIGTGYFVELDREKAKAIFDRKKEHITKQVETVEG 122
Query: 248 IF 249
I
Sbjct: 123 IL 124
>sp|Q04493|PFD5_YEAST Prefoldin subunit 5 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=GIM5 PE=1 SV=1
Length = 163
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 7/91 (7%)
Query: 163 ALKRAQVKFQDSKESLDKITPSSQ----GNPIMVPLTDSMYVEGKIADADKVVIDIGTGF 218
AL A+ KF E +D I SQ G ++VP + S+Y+ GKI D K ++DIGTG+
Sbjct: 36 ALTMAKGKF---TECIDDIKTVSQAGNEGQKLLVPASASLYIPGKIVDNKKFMVDIGTGY 92
Query: 219 YVEKSIPDAQDYFKRRVAFVTQQMEKLQFIF 249
YVEKS A +++++V + ++ ++Q I
Sbjct: 93 YVEKSAEAAIAFYQKKVDKLNKESVQIQDII 123
>sp|A8XPL7|PFD5_CAEBR Probable prefoldin subunit 5 OS=Caenorhabditis briggsae GN=pfd-5
PE=3 SV=2
Length = 154
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 53/87 (60%)
Query: 163 ALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
ALK + + S +L+ + + G+ ++PL++S+Y+ +++D +K +++IGTG++VE
Sbjct: 38 ALKALLSRNEKSISALEDVKVGTAGHTALIPLSESLYIRAELSDPNKHMVEIGTGYFVEL 97
Query: 223 SIPDAQDYFKRRVAFVTQQMEKLQFIF 249
A+ F R+ + +Q+E ++ I
Sbjct: 98 DREKAKGIFDRKKEHIAKQVETVEGIL 124
>sp|Q8U3T0|PFDA_PYRFU Prefoldin subunit alpha OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=pfdA PE=3 SV=1
Length = 146
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 167 AQVKFQDSKESLDKITPSSQGNP-IMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIP 225
AQ + Q KE+L+ + NP I+VP+ +++GKI D + +I +G+G+ VEK++
Sbjct: 34 AQAEVQTVKETLENLMKIEDENPEILVPIGAGSFLKGKIVDKNNAIISVGSGYAVEKTLE 93
Query: 226 DAQDYFKRRVAFVTQQMEKLQ 246
DA Y R+ + + K Q
Sbjct: 94 DAIKYLDERIKEYDEAIRKTQ 114
>sp|Q5JIE3|PFDA1_PYRKO Prefoldin subunit alpha 1 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=pfdA1 PE=3 SV=1
Length = 146
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%)
Query: 170 KFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQD 229
+FQ KE+L+ + I+VP+ +++GKI DA ++ +G G+ V+KS+ D+ +
Sbjct: 38 EFQAVKETLEGLKNEEGEFEILVPIGAGSFLKGKIVDAKNAIVSVGAGYAVQKSLDDSIE 97
Query: 230 YFKRRVAFVTQQMEKLQ 246
Y ++R+ + + K Q
Sbjct: 98 YLEKRIKEYEEAIAKTQ 114
>sp|Q46F99|PFDA_METBF Prefoldin subunit alpha OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=pfdA PE=3 SV=1
Length = 144
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 182 TPSSQGN--PIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVT 239
T S++G MVP+ +V +I +ADKV++D+G GF E++ +A + KRR +T
Sbjct: 52 TVSAEGKTAETMVPVGFGSFVYAEIKNADKVIVDLGAGFSAEETADEAVETLKRRKEQLT 111
Query: 240 QQMEKLQFIFLLYI 253
+ +E++ YI
Sbjct: 112 KILEQMSASLTKYI 125
>sp|Q9UYI4|PFDA_PYRAB Prefoldin subunit alpha OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=pfdA PE=3 SV=1
Length = 148
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 3/73 (4%)
Query: 164 LKRAQVKFQDSKESLDKITPSSQGNP-IMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
L RA+V Q KE+L+ + + P I+VP+ +++G I D + ++ +G+G+ VE+
Sbjct: 34 LARAEV--QTVKETLENLKKIEEEKPEILVPIGAGSFLKGIIVDKNNAIVSVGSGYAVER 91
Query: 223 SIPDAQDYFKRRV 235
S+ DA + ++R+
Sbjct: 92 SVDDAISFLEKRL 104
>sp|O58263|PFDA_PYRHO Prefoldin subunit alpha OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=pfdA PE=1 SV=2
Length = 148
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 48/81 (59%), Gaps = 1/81 (1%)
Query: 167 AQVKFQDSKESLDKITPSSQGNP-IMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIP 225
A+ + Q +E+L+ + + P I+VP+ +++G I D + ++ +G+G+ VE+SI
Sbjct: 35 AKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVERSID 94
Query: 226 DAQDYFKRRVAFVTQQMEKLQ 246
+A + ++R+ + ++K Q
Sbjct: 95 EAISFLEKRLKEYDEAIKKTQ 115
>sp|B6YWD9|PFDA_THEON Prefoldin subunit alpha OS=Thermococcus onnurineus (strain NA1)
GN=pfdA PE=3 SV=1
Length = 147
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Query: 170 KFQDSKESLDKITPSSQGNP-IMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQ 228
+FQ K++L+++ P I+VP+ +++G I D + ++ +G+G+ EKS+ DA
Sbjct: 38 EFQAVKQTLEELKKVEDEKPEILVPIGAGSFLKGMIVDKNSAIVSVGSGYATEKSLDDAI 97
Query: 229 DYFKRRVAFVTQQMEKLQ 246
Y R+ + + K Q
Sbjct: 98 GYLDARIKEYDEAIRKTQ 115
>sp|A1RXA9|PFDA_THEPD Prefoldin subunit alpha OS=Thermofilum pendens (strain Hrk 5)
GN=pfdA PE=3 SV=1
Length = 129
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 177 SLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVA 236
+L I+ G I+VP++ +YV I +K ++ IG+ VEKS+ +A ++ +R
Sbjct: 42 ALKNISSLEDGKEILVPVSAGVYVRASIKRQEKFLVAIGSNILVEKSLDEAVEFLNKRKE 101
Query: 237 FVTQQMEK 244
++Q +E+
Sbjct: 102 ELSQLVER 109
>sp|Q0W5H4|PFDA_UNCMA Prefoldin subunit alpha OS=Uncultured methanogenic archaeon RC-I
GN=pfdA PE=3 SV=1
Length = 138
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 168 QVKFQDSKESLDKITP---SSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSI 224
Q D +L IT + +G+ ++VP+ +V IA DKV++ +G VE+++
Sbjct: 35 QASINDVDSALKAITSLEGAGEGHELLVPIGAGSFVHATIAKPDKVLVGLGADISVERTV 94
Query: 225 PDAQDYFKRR 234
DA+ F+ R
Sbjct: 95 ADARKIFQAR 104
>sp|Q12ZJ7|PFDA_METBU Prefoldin subunit alpha OS=Methanococcoides burtonii (strain DSM
6242) GN=pfdA PE=3 SV=1
Length = 138
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 177 SLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVA 236
+L+++ +S M+PL + IAD DK+V+ +G G VEK+ +A + +R
Sbjct: 46 TLEELKSASGAINTMIPLGAGALIHANIADVDKIVVSVGAGISVEKTPTEAIETLTQRKE 105
Query: 237 FVTQQMEKL 245
+ + +E+L
Sbjct: 106 ELGKVVERL 114
>sp|Q9HMN2|PFDA_HALSA Prefoldin subunit alpha OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=pfdA PE=3 SV=1
Length = 154
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 163 ALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
+L++ Q + +++KE+LD + G + VPL YV ++ D D+VV+ +G G+ E+
Sbjct: 34 SLRQEQTEIEEAKEALDVLET---GATVQVPLGGDAYVRAEVKDMDEVVVSLGGGYAAEQ 90
Query: 223 SIPDAQDYFKRRVAFVTQQMEKLQ 246
A + A + +++ +Q
Sbjct: 91 DSDAAASVLDEKKATIDGRIDDVQ 114
>sp|B0R7X6|PFDA_HALS3 Prefoldin subunit alpha OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=pfdA PE=3 SV=1
Length = 154
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 163 ALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
+L++ Q + +++KE+LD + G + VPL YV ++ D D+VV+ +G G+ E+
Sbjct: 34 SLRQEQTEIEEAKEALDVLET---GATVQVPLGGDAYVRAEVKDMDEVVVSLGGGYAAEQ 90
Query: 223 SIPDAQDYFKRRVAFVTQQMEKLQ 246
A + A + +++ +Q
Sbjct: 91 DSDAAASVLDEKKATIDGRIDDVQ 114
>sp|A9A592|PFDA_NITMS Prefoldin subunit alpha OS=Nitrosopumilus maritimus (strain SCM1)
GN=pfdA PE=3 SV=1
Length = 145
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 171 FQDSKESLDKITPSSQGNP---IMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDA 227
F+++ +++ I S+ NP +VP+ YV KI+ K++++IG G VEK P A
Sbjct: 34 FREATAAIESIKSLSK-NPESDTLVPIGLGTYVPTKISSDSKIILNIGAGVAVEKDFPSA 92
Query: 228 QDYFKRRV 235
+Y + R+
Sbjct: 93 INYLEERI 100
>sp|Q18EV0|PFDA_HALWD Prefoldin subunit alpha OS=Haloquadratum walsbyi (strain DSM 16790)
GN=pfdA PE=3 SV=1
Length = 154
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 175 KESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDA------- 227
E++D I G + VPL YV +I DAD++++ +G F E+S +A
Sbjct: 42 DEAMDAIQTLESGATVQVPLGGDAYVRAEIQDADEIIVGLGADFAAEQSADNAVESLSTK 101
Query: 228 QDYFKRRVAFVTQQMEKLQ 246
QD R+ + +++L+
Sbjct: 102 QDALDNRIESLRDDIDELE 120
>sp|Q5JE63|PFDA2_PYRKO Prefoldin subunit alpha 2 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=pfdA2 PE=3 SV=1
Length = 142
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 186 QGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRV 235
+G I +PL + + GKI + D V++D+G G V ++ +A++ ++R+
Sbjct: 56 KGKEIYIPLGSGVAIRGKIENPDDVIMDVGAGILVGATVDEARENIEKRI 105
>sp|Q3IUJ7|PFDA_NATPD Prefoldin subunit alpha OS=Natronomonas pharaonis (strain DSM 2160
/ ATCC 35678) GN=pfdA PE=3 SV=1
Length = 151
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 176 ESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRV 235
E+++ I G + VPL YV I D D+VV+ +G G+ E+ A + +R+
Sbjct: 45 EAIEAIETLETGATVQVPLGGDAYVRATIEDMDEVVVTLGGGYAAERDSEGAVESLERKK 104
Query: 236 AFVTQQMEKL 245
+ ++E+L
Sbjct: 105 ETLDDRIEEL 114
>sp|B9LUU4|PFDA_HALLT Prefoldin subunit alpha OS=Halorubrum lacusprofundi (strain ATCC
49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=pfdA PE=3 SV=1
Length = 152
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 39/74 (52%)
Query: 173 DSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFK 232
D ++++ I G+ + VPL YV ++ D D++++ +G + E+S DA D
Sbjct: 39 DIDDAIEAIETLDSGSTVQVPLGGGAYVRAEVQDIDEIIVSLGGNYSAEQSEEDAIDVLG 98
Query: 233 RRVAFVTQQMEKLQ 246
R+ + ++E+ Q
Sbjct: 99 RKRDALDDRIEETQ 112
>sp|Q5UY26|PFDA_HALMA Prefoldin subunit alpha OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=pfdA PE=3
SV=1
Length = 154
Score = 38.5 bits (88), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 164 LKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
++R + K D E+++ I G+ + VPL Y+ I D D+VV+ +G G+ E+
Sbjct: 35 IERLREKQTDIDEAIEAIETLDSGSTVQVPLGGDAYIRATIEDIDEVVVSLGGGYSAERE 94
>sp|A3CWZ2|PFDA_METMJ Prefoldin subunit alpha OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=pfdA PE=3 SV=1
Length = 149
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 176 ESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRV 235
E+L + ++ G +++P+ Y+ K+ DA V+++IG VE++ DA Y + R+
Sbjct: 45 ETLRALQENADG-AVLLPIGGGAYLRVKVLDAGHVLVNIGADVSVERATADAVGYLEDRI 103
>sp|A0RUF1|PFDA_CENSY Prefoldin subunit alpha OS=Cenarchaeum symbiosum (strain A) GN=pfdA
PE=3 SV=2
Length = 143
Score = 38.1 bits (87), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 188 NPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRV 235
+ ++VPL + + K++ +K+VI+IG G VEK A Y + R+
Sbjct: 53 SEVLVPLGLGTFAKSKVSSGEKIVINIGAGAAVEKDKDAALSYLESRI 100
>sp|O28216|PFDA_ARCFU Prefoldin subunit alpha OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=pfdA PE=3 SV=1
Length = 137
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 28/42 (66%)
Query: 204 IADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKL 245
+ ++ K+++DIG+G VE+ + +A ++ K R+ + + EK+
Sbjct: 71 VKNSKKMLVDIGSGVVVEREVGEAIEFVKNRIKKIEENQEKM 112
>sp|A5UL29|PFDA_METS3 Prefoldin subunit alpha OS=Methanobrevibacter smithii (strain PS /
ATCC 35061 / DSM 861) GN=pfdA PE=3 SV=1
Length = 146
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 33/54 (61%)
Query: 192 VPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKL 245
VP+ +++G++ + D+V++ IG+G V+K + A++ R+ + ++K+
Sbjct: 58 VPVGAGSFIKGELKNTDEVIVSIGSGIAVKKDVDGARETIARQKKDLEDSLDKM 111
>sp|Q8TUY7|PFDA_METKA Prefoldin subunit alpha OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=pfdA PE=3 SV=1
Length = 157
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 175 KESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDA 227
+E+L + ++VP+ +V + D ++V++ IG G VE++I +A
Sbjct: 49 EETLKGVKELEGDEEVLVPVGAQSFVRACVTDTERVIVGIGAGVAVERTIDEA 101
>sp|A2STI6|PFDA_METLZ Prefoldin subunit alpha OS=Methanocorpusculum labreanum (strain
ATCC 43576 / DSM 4855 / Z) GN=pfdA PE=3 SV=1
Length = 147
Score = 35.0 bits (79), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 174 SKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKR 233
S ESL+ + P ++ L + V + D K+++ IG G VEK + +A +
Sbjct: 48 STESLEAFSGLEGDVPTLLNLGGGISVHAIVTDTKKILVGIGAGITVEKPVEEAITFLHD 107
Query: 234 RV 235
RV
Sbjct: 108 RV 109
>sp|Q54ND3|UXT_DICDI Protein UXT homolog OS=Dictyostelium discoideum GN=DDB_G0285389
PE=3 SV=1
Length = 161
Score = 34.7 bits (78), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 191 MVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQME 243
M+ L YV+ ++ D + +DIG G +V+ ++ +A + + F+ + +E
Sbjct: 82 MINLGSECYVKARVQDTSYIYVDIGLGIHVKYTLEEAIKFINEKETFLNKTVE 134
>sp|Q8PYQ1|PFDA_METMA Prefoldin subunit alpha OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=pfdA PE=3 SV=2
Length = 142
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 178 LDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAF 237
L + + + MVP+ YV ++ + DKVV+++G GF E++ A + RR
Sbjct: 49 LKAASEAGRAAETMVPVGFGSYVYAEVKNPDKVVVNLGAGFSAEETAEAAVETLNRRKEQ 108
Query: 238 VTQQMEKL 245
+T+ +E++
Sbjct: 109 LTKILEQM 116
>sp|A7I9I3|PFDA_METB6 Prefoldin subunit alpha OS=Methanoregula boonei (strain 6A8)
GN=pfdA PE=3 SV=2
Length = 153
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 184 SSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAF------ 237
+S+ +++ + + K+ + +KV+++IG+ VEK+ DA +Y K R+
Sbjct: 49 TSEDGTVLLQIGGGASLRAKVLEPEKVLLNIGSEVIVEKTSVDAIEYLKDRITELEASQK 108
Query: 238 -VTQQMEKLQ 246
V++ +EKL+
Sbjct: 109 KVSEALEKLR 118
>sp|A7T0W1|UXT_NEMVE Protein UXT homolog OS=Nematostella vectensis GN=v1g140887 PE=3
SV=1
Length = 159
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 33/54 (61%)
Query: 192 VPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKL 245
V L + + + + D ++ I +G GF+VE ++ +A ++ ++++A + ++KL
Sbjct: 71 VDLGCNFFCQASVPDPSRIFIAVGYGFFVEFTLSEALNFIEKKLAHLQHSVDKL 124
>sp|O27646|PFDA_METTH Prefoldin subunit alpha OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=pfdA PE=1 SV=1
Length = 141
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 187 GNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFK 232
G+ +VP+ +++ ++ D +V++ +G G ++K+ DA + K
Sbjct: 53 GSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIK 98
>sp|O66961|PFDA_AQUAE Putative prefoldin subunit alpha OS=Aquifex aeolicus (strain VF5)
GN=aq_759 PE=3 SV=1
Length = 149
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 186 QGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVA 236
+G +++P+ + ++ K D+V++ IGTG S +A D ++ +A
Sbjct: 62 KGKEVLIPVGATAQIKAKSEGVDEVIMSIGTGISAVMSYDEAVDRIRKEIA 112
>sp|Q631P8|MURB2_BACCZ UDP-N-acetylenolpyruvoylglucosamine reductase 2 OS=Bacillus cereus
(strain ZK / E33L) GN=murB2 PE=3 SV=1
Length = 305
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 93 LRELFHPTTDFSYLKLLESSNNFILKQ----FKEGEHCTSAGSEFHNCTAFTKRELPSAV 148
LR L +F Y K + ++N++I+ + +EG H ++ + T + + P
Sbjct: 163 LRTLTKEAFEFGYRKSVFANNHYIILEARFELEEGVH-EEIKAKMDDLTFKRESKQPLEY 221
Query: 149 PLCGGTLRRQPNNGALKRAQ 168
P CG +R PNN A K Q
Sbjct: 222 PSCGSVFKRPPNNFAGKLIQ 241
>sp|Q815R9|MURB2_BACCR UDP-N-acetylenolpyruvoylglucosamine reductase 2 OS=Bacillus cereus
(strain ATCC 14579 / DSM 31) GN=murB2 PE=3 SV=1
Length = 305
Score = 32.3 bits (72), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Query: 93 LRELFHPTTDFSYLKLLESSNNFILKQ----FKEGEHCTSAGSEFHNCTAFTKRELPSAV 148
LR L +F Y K + ++N++I+ + +EG H ++ + T + + P
Sbjct: 163 LRTLTKEAFEFGYRKSVFANNHYIILEARFELEEGVH-EEIKAKMDDLTFKRESKQPLEY 221
Query: 149 PLCGGTLRRQPNNGALKRAQ 168
P CG +R PNN A K Q
Sbjct: 222 PSCGSVFKRPPNNFAGKLIQ 241
>sp|A6UWR8|PFDA_META3 Prefoldin subunit alpha OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=pfdA PE=3 SV=1
Length = 144
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 177 SLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRV 235
S+D + I++PL +++ K D KV++ G ++EK I D F + +
Sbjct: 39 SIDSMEGLKDSEDILIPLGGGAFIKAKAMDTKKVIMGAGADVFLEKDISDVVVDFNKSI 97
>sp|Q8H8C7|CEBIP_ORYSJ Chitin elicitor-binding protein OS=Oryza sativa subsp. japonica
GN=CEBIP PE=1 SV=1
Length = 356
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 125 HCTSAGSEFH-NCTAFTKRELPSAVPLCGGTLRRQPNNG 162
C+ + + + NCTA + PS VPLC GTL+ NG
Sbjct: 254 RCSCSSTTYQLNCTAVQNKGCPS-VPLCNGTLKLGETNG 291
>sp|Q58064|PFDA2_METJA Prefoldin subunit alpha 2 OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=pfdA2 PE=3 SV=1
Length = 147
Score = 30.8 bits (68), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 29/65 (44%)
Query: 171 FQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDY 230
+ S +L + +G ++VP+ VE K+ DKVV+ +G E +A Y
Sbjct: 36 LRQSLATLKSLKTLGEGKTVLVPVGSIAQVEMKVEKMDKVVVSVGQNISAELEYEEALKY 95
Query: 231 FKRRV 235
+ +
Sbjct: 96 IEDEI 100
>sp|P61759|PFD3_MOUSE Prefoldin subunit 3 OS=Mus musculus GN=Vbp1 PE=2 SV=2
Length = 196
Score = 30.8 bits (68), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 194 LTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQ 246
L D++Y + + DKV + +G +E I +AQ ++ ++ T+ ++ L+
Sbjct: 106 LADNLYCKASVPPTDKVCLWLGANVMLEYDIDEAQALLEKNLSTATKNLDSLE 158
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,457,452
Number of Sequences: 539616
Number of extensions: 3723361
Number of successful extensions: 8746
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 8678
Number of HSP's gapped (non-prelim): 76
length of query: 264
length of database: 191,569,459
effective HSP length: 115
effective length of query: 149
effective length of database: 129,513,619
effective search space: 19297529231
effective search space used: 19297529231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)