Query psy3204
Match_columns 264
No_of_seqs 177 out of 458
Neff 3.3
Searched_HMMs 29240
Date Fri Aug 16 19:00:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fxk_C Protein (prefoldin); ar 99.9 3.7E-25 1.2E-29 177.6 15.8 94 161-255 24-117 (133)
2 2zdi_C Prefoldin subunit alpha 99.9 3.8E-24 1.3E-28 176.2 15.5 95 161-255 32-127 (151)
3 2zqm_A Prefoldin beta subunit 97.7 0.00057 2E-08 52.6 11.3 73 159-255 27-99 (117)
4 1fxk_A Prefoldin; archaeal pro 97.1 0.0035 1.2E-07 47.6 9.5 36 217-252 56-91 (107)
5 2zdi_C Prefoldin subunit alpha 86.6 2.4 8.3E-05 34.2 7.6 83 159-254 33-133 (151)
6 1fxk_C Protein (prefoldin); ar 71.1 5.5 0.00019 31.2 4.8 56 186-254 68-123 (133)
7 3aei_A Prefoldin beta subunit 66.2 21 0.0007 28.0 6.9 42 216-257 51-92 (99)
8 1m1j_B Fibrinogen beta chain; 57.3 63 0.0022 31.4 10.1 37 221-258 163-199 (464)
9 3swy_A Cyclic nucleotide-gated 36.2 59 0.002 22.4 4.6 28 231-258 3-30 (46)
10 2z5i_A TM, general control pro 35.2 73 0.0025 22.1 5.0 32 228-259 7-38 (52)
11 1cuk_A RUVA protein; DNA repai 34.8 41 0.0014 28.8 4.4 29 198-226 3-34 (203)
12 1ixr_A Holliday junction DNA h 34.8 40 0.0014 28.6 4.3 29 198-226 3-34 (191)
13 1q08_A Zn(II)-responsive regul 28.6 95 0.0032 22.3 4.9 28 223-250 36-63 (99)
14 3rrk_A V-type ATPase 116 kDa s 25.6 1.2E+02 0.0039 26.9 5.8 36 223-258 223-258 (357)
15 3swf_A CGMP-gated cation chann 24.0 1.1E+02 0.0038 23.1 4.6 28 231-258 5-32 (74)
16 1fxk_A Prefoldin; archaeal pro 22.6 1.4E+02 0.0047 21.9 4.9 77 161-254 24-100 (107)
17 2zqm_A Prefoldin beta subunit 21.4 1.5E+02 0.005 22.0 4.9 36 220-255 71-106 (117)
No 1
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=99.93 E-value=3.7e-25 Score=177.63 Aligned_cols=94 Identities=17% Similarity=0.335 Sum_probs=88.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHH
Q psy3204 161 NGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQ 240 (264)
Q Consensus 161 LqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~Lee 240 (264)
+++|+.++.+|.+++++|+.+++ +.+.++|||||+++||||+|.|+++|+|+||+|||||+|.++|++|+++|++.+++
T Consensus 24 ~~~l~~~i~e~~~~~e~l~~l~~-~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~ 102 (133)
T 1fxk_C 24 MEAVRATISELEILEKTLSDIQG-KDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKKNFEDAMESIKSQKNELES 102 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-CTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-CCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEEeeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 67899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy3204 241 QMEKLQFIFLLYILI 255 (264)
Q Consensus 241 qieKLqkiIq~~l~~ 255 (264)
+++++++.+...=..
T Consensus 103 ~~~~l~~~l~~l~~~ 117 (133)
T 1fxk_C 103 TLQKMGENLRAITDI 117 (133)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988765443
No 2
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=99.92 E-value=3.8e-24 Score=176.19 Aligned_cols=95 Identities=22% Similarity=0.406 Sum_probs=87.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCC-CCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHH
Q psy3204 161 NGALKRAQVKFQDSKESLDKITPSS-QGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVT 239 (264)
Q Consensus 161 LqqLk~Aq~Kf~eskeALe~Lk~~~-egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~Le 239 (264)
+++|+.|.+++.++.++++.++..+ .+.++|||||+++||||+|.|+++|+|+||+|||||+|.++|++|+++|++.++
T Consensus 32 ~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~ 111 (151)
T 2zdi_C 32 LELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAISFLEKRLKEYD 111 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeEEEecHHHHHHHHHHHHHHHH
Confidence 9999889998888888888887655 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3204 240 QQMEKLQFIFLLYILI 255 (264)
Q Consensus 240 eqieKLqkiIq~~l~~ 255 (264)
++++++++.+...=..
T Consensus 112 ~~l~~l~~~l~~l~~~ 127 (151)
T 2zdi_C 112 EAIKKTQGALAELEKR 127 (151)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999988765443
No 3
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=97.68 E-value=0.00057 Score=52.61 Aligned_cols=73 Identities=5% Similarity=0.060 Sum_probs=53.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHH
Q psy3204 159 PNNGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFV 238 (264)
Q Consensus 159 qQLqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~L 238 (264)
.+++.++.-..+...+.+.|+.+. .+..|+.++| |+||+.+.++|+..+++|++.+
T Consensus 27 ~q~~~l~~~~~e~~~~~~eL~~l~---~d~~vy~~iG---------------------~vfv~~~~~ea~~~L~~~~e~i 82 (117)
T 2zqm_A 27 QQKQKVQLELTEAKKALDEIESLP---DDAVVYKTVG---------------------TLIVKTTKDKAVAELKEKIETL 82 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSC---TTCCEEEEET---------------------TEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC---CCcHhHHHhh---------------------HHHhhccHHHHHHHHHHHHHHH
Confidence 345555555555555555555543 4555777776 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3204 239 TQQMEKLQFIFLLYILI 255 (264)
Q Consensus 239 eeqieKLqkiIq~~l~~ 255 (264)
++.+++|++.+...-.+
T Consensus 83 e~~i~~le~~~~~l~~~ 99 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEK 99 (117)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998877655444
No 4
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=97.12 E-value=0.0035 Score=47.58 Aligned_cols=36 Identities=0% Similarity=-0.001 Sum_probs=32.5
Q ss_pred cEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204 217 GFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLY 252 (264)
Q Consensus 217 GYYVEKSidEAiefleRRIk~LeeqieKLqkiIq~~ 252 (264)
|+||+.+.++|...+++|++.+++.++.+++.+...
T Consensus 56 ~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~ 91 (107)
T 1fxk_A 56 NILIRVAKDELTEELQEKLETLQLREKTIERQEERV 91 (107)
T ss_dssp TEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999988776544
No 5
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=86.61 E-value=2.4 Score=34.23 Aligned_cols=83 Identities=14% Similarity=0.087 Sum_probs=61.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHhhC-CC-----------------CCCCceEEecCCceeEEEEEecCCeEEEEecCcEEE
Q psy3204 159 PNNGALKRAQVKFQDSKESLDKIT-PS-----------------SQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYV 220 (264)
Q Consensus 159 qQLqqLk~Aq~Kf~eskeALe~Lk-~~-----------------~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYV 220 (264)
+++..-+....++..+++.|+.++ .. ....+|+|+||++.||.=.+.+...
T Consensus 33 ~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~g~~vE~~~~eA~~----------- 101 (151)
T 2zdi_C 33 ELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVERSIDEAIS----------- 101 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEETTEEEEEEHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCCCeEEEecHHHHHH-----------
Confidence 347666777889999999999886 32 1346899999999999998887543
Q ss_pred EeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204 221 EKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYIL 254 (264)
Q Consensus 221 EKSidEAiefleRRIk~LeeqieKLqkiIq~~l~ 254 (264)
-+++=+++++++++.+++.++.++..+..+..
T Consensus 102 --~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~ 133 (151)
T 2zdi_C 102 --FLEKRLKEYDEAIKKTQGALAELEKRIGEVAR 133 (151)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777777777776665543
No 6
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=71.12 E-value=5.5 Score=31.15 Aligned_cols=56 Identities=9% Similarity=0.195 Sum_probs=39.7
Q ss_pred CCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204 186 QGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYIL 254 (264)
Q Consensus 186 egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~LeeqieKLqkiIq~~l~ 254 (264)
...+|+|.||.+.||.=.+.+... -.++=++.++++++.+++.++.++..+..+..
T Consensus 68 ~~~~V~v~lG~g~~vE~~~~eA~~-------------~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~ 123 (133)
T 1fxk_C 68 DTSEVIMSVGAGVAIKKNFEDAME-------------SIKSQKNELESTLQKMGENLRAITDIMMKLSP 123 (133)
T ss_dssp STTEEEEEEETTEEEEEEHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCEEEEeeHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356799999999999998887543 24555666666777777666666666665544
No 7
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=66.23 E-value=21 Score=28.00 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=33.9
Q ss_pred CcEEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3204 216 TGFYVEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYILIFC 257 (264)
Q Consensus 216 TGYYVEKSidEAiefleRRIk~LeeqieKLqkiIq~~l~~~~ 257 (264)
++..||.+.|+|+++++|---..+..+++|.+.=....++..
T Consensus 51 ~dllveitkdeaiehier~rl~ykreie~l~~~ekeime~ls 92 (99)
T 3aei_A 51 SDLLVEITKDEAIEHIERSRLVYKREIEKLKKREKEIMEELS 92 (99)
T ss_dssp TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999888888888888877766655543
No 8
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=57.30 E-value=63 Score=31.41 Aligned_cols=37 Identities=14% Similarity=0.346 Sum_probs=29.7
Q ss_pred EeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3204 221 EKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYILIFCS 258 (264)
Q Consensus 221 EKSidEAiefleRRIk~LeeqieKLqkiIq~~l~~~~~ 258 (264)
+...+..+..++..++.++..|.+|+..+.. ++++|.
T Consensus 163 ~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~-~~~~~~ 199 (464)
T 1m1j_B 163 DNNIPSSLRVLRAVIDSLHKKIQKLENAIAT-QTDYCR 199 (464)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTT
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Confidence 4456778888888999999999999998876 567775
No 9
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=36.22 E-value=59 Score=22.43 Aligned_cols=28 Identities=14% Similarity=0.273 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3204 231 FKRRVAFVTQQMEKLQFIFLLYILIFCS 258 (264)
Q Consensus 231 leRRIk~LeeqieKLqkiIq~~l~~~~~ 258 (264)
++.|++.|+.+++.|+..+.-.|-||-|
T Consensus 3 lEekv~~Le~~ld~LqTr~ArLlae~~s 30 (46)
T 3swy_A 3 LEEKVEQLGSSLDTLQTRFARLLAEYNA 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999976
No 10
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=35.25 E-value=73 Score=22.08 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3204 228 QDYFKRRVAFVTQQMEKLQFIFLLYILIFCSL 259 (264)
Q Consensus 228 iefleRRIk~LeeqieKLqkiIq~~l~~~~~~ 259 (264)
.+|-+|.+..|++.+++|+..+-.-=+.|+.+
T Consensus 7 aefAERsV~KLek~ID~LEdeL~~eKek~~~i 38 (52)
T 2z5i_A 7 NYHLENEVARLKKLVDDLEDELYAQKLKYKAI 38 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 36889999999999999999888877777754
No 11
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=34.85 E-value=41 Score=28.77 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=23.6
Q ss_pred eeEEEEEe--cCCeEEEEecC-cEEEEeChHH
Q psy3204 198 MYVEGKIA--DADKVVIDIGT-GFYVEKSIPD 226 (264)
Q Consensus 198 LYVpGKL~--DteKVLVDIGT-GYYVEKSidE 226 (264)
.|++|+|. .++.|+||+|. ||-|-.+..-
T Consensus 3 ~~l~G~l~~~~~~~vvidv~GVGY~v~~~~~t 34 (203)
T 1cuk_A 3 GRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTC 34 (203)
T ss_dssp CEEEEEEEEEETTEEEEEETTEEEEEECCHHH
T ss_pred ceEEEEEEEEeCCEEEEEECCEEEEEEcCHHH
Confidence 48999998 48889999876 9999887543
No 12
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=34.77 E-value=40 Score=28.64 Aligned_cols=29 Identities=28% Similarity=0.581 Sum_probs=23.9
Q ss_pred eeEEEEEe--cCCeEEEEecC-cEEEEeChHH
Q psy3204 198 MYVEGKIA--DADKVVIDIGT-GFYVEKSIPD 226 (264)
Q Consensus 198 LYVpGKL~--DteKVLVDIGT-GYYVEKSidE 226 (264)
.|+.|+|. .++.|+||+|. ||-|-.+..-
T Consensus 3 ~~l~G~l~~~~~~~~vidv~GvGY~v~~~~~t 34 (191)
T 1ixr_A 3 RYLRGLVLKKEAGGFVLLAGGVGFFLQAPTPF 34 (191)
T ss_dssp CEEEEEEEEECSSEEEEECSSEEEEEECCHHH
T ss_pred ceEEEEEEEEeCCEEEEEECCEEEEEEcCHHH
Confidence 48999998 47889999865 9999887654
No 13
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=28.58 E-value=95 Score=22.33 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204 223 SIPDAQDYFKRRVAFVTQQMEKLQFIFL 250 (264)
Q Consensus 223 SidEAiefleRRIk~LeeqieKLqkiIq 250 (264)
+.++..++++++++.+++++++|+....
T Consensus 36 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~ 63 (99)
T 1q08_A 36 TCQESKGIVQERLQEVEARIAELQSMQR 63 (99)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999877654
No 14
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=25.58 E-value=1.2e+02 Score=26.88 Aligned_cols=36 Identities=8% Similarity=0.003 Sum_probs=31.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3204 223 SIPDAQDYFKRRVAFVTQQMEKLQFIFLLYILIFCS 258 (264)
Q Consensus 223 SidEAiefleRRIk~LeeqieKLqkiIq~~l~~~~~ 258 (264)
+..+++.-++.|++.+++.++.+++.+..+...+..
T Consensus 223 ~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~ 258 (357)
T 3rrk_A 223 PLGKAAARMKERARLAPEELVGIREEVARLSRESGE 258 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777889999999999999999999999998887544
No 15
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=24.02 E-value=1.1e+02 Score=23.10 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3204 231 FKRRVAFVTQQMEKLQFIFLLYILIFCS 258 (264)
Q Consensus 231 leRRIk~LeeqieKLqkiIq~~l~~~~~ 258 (264)
++.|++.|+.+++.|+..+.-.|-||-|
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~s 32 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYES 32 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999988876
No 16
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=22.59 E-value=1.4e+02 Score=21.92 Aligned_cols=77 Identities=8% Similarity=0.108 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCCCCceEEecCCceeEEEEEecCCeEEEEecCcEEEEeChHHHHHHHHHHHHHHHH
Q psy3204 161 NGALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQ 240 (264)
Q Consensus 161 LqqLk~Aq~Kf~eskeALe~Lk~~~egkEILVPLGSSLYVpGKL~DteKVLVDIGTGYYVEKSidEAiefleRRIk~Lee 240 (264)
++.++.-..+...+.+.|+.+. .+..|..++| .+||+-.+.+ |...+++-+++++.+++.+++
T Consensus 24 ~~~l~~~~~e~~~~~~EL~~l~---~d~~vy~~iG-~vfv~~~~~e-------------~~~~L~~~~e~i~~~i~~le~ 86 (107)
T 1fxk_A 24 KQTVEMQINETQKALEELSRAA---DDAEVYKSSG-NILIRVAKDE-------------LTEELQEKLETLQLREKTIER 86 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC---TTCCEEEEET-TEEEEECHHH-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCC---CCchHHHHHh-HHHHhccHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555666666666654 4667999999 4566655443 345688999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy3204 241 QMEKLQFIFLLYIL 254 (264)
Q Consensus 241 qieKLqkiIq~~l~ 254 (264)
+++.++..+..+=.
T Consensus 87 ~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 87 QEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888876543
No 17
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.35 E-value=1.5e+02 Score=22.04 Aligned_cols=36 Identities=11% Similarity=0.066 Sum_probs=26.1
Q ss_pred EEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3204 220 VEKSIPDAQDYFKRRVAFVTQQMEKLQFIFLLYILI 255 (264)
Q Consensus 220 VEKSidEAiefleRRIk~LeeqieKLqkiIq~~l~~ 255 (264)
+...+++-+++++.+++.|+++++.+++.+...=..
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~ 106 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQ 106 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888887777665443
Done!