RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3204
(264 letters)
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: a.2.5.1
Length = 133
Score = 85.8 bits (212), Expect = 3e-21
Identities = 15/84 (17%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 163 ALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
A++ + + +++L I G+ +VP+ +++ ++ D +V++ +G G ++K
Sbjct: 26 AVRATISELEILEKTLSDI-QGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKK 84
Query: 223 SIPDAQDYFKRRVAFVTQQMEKLQ 246
+ DA + K + + ++K+
Sbjct: 85 NFEDAMESIKSQKNELESTLQKMG 108
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus
horikoshii}
Length = 151
Score = 84.7 bits (209), Expect = 1e-20
Identities = 21/85 (24%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Query: 163 ALKRAQVKFQDSKESLDKIT-PSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVE 221
L A+ + Q +E+L+ + + I+VP+ +++G I D + ++ +G+G+ VE
Sbjct: 34 LLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGSGYAVE 93
Query: 222 KSIPDAQDYFKRRVAFVTQQMEKLQ 246
+SI +A + ++R+ + ++K Q
Sbjct: 94 RSIDEAISFLEKRLKEYDEAIKKTQ 118
Score = 31.1 bits (70), Expect = 0.20
Identities = 3/22 (13%), Positives = 6/22 (27%)
Query: 11 MQQIDLTKLAFPQLTQLKNQLD 32
M ++ +L L
Sbjct: 1 MIRMAQNNKELEKLAYEYQVLQ 22
Score = 31.1 bits (70), Expect = 0.20
Identities = 3/22 (13%), Positives = 6/22 (27%)
Query: 54 MQQIDLTKLAFPQLTQLKNQLD 75
M ++ +L L
Sbjct: 1 MIRMAQNNKELEKLAYEYQVLQ 22
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.4 bits (107), Expect = 1e-05
Identities = 42/276 (15%), Positives = 78/276 (28%), Gaps = 113/276 (40%)
Query: 12 QQIDLTKLAFPQLTQLKNQLDSVSFQALALSAMSVNQSGGEG----MQQI-DLTKLAFPQ 66
+ A+P +L S + + EG M I +LT+
Sbjct: 311 YE------AYPNT-------------SLPPSILEDSLENNEGVPSPMLSISNLTQ----- 346
Query: 67 LTQLKNQLDSVSFQALGLCFKWQGSHLRELFHPTTDFSYLKLLESSNNFILKQFKEGEHC 126
Q+++ ++ + SHL P + L+ + N ++
Sbjct: 347 -EQVQDYVNKTN------------SHL-----PAGKQVEISLVNGAKNLVV--------- 379
Query: 127 TSAGSEFHNCTAFTKRELPSAVPLCG--GTLRRQPNNGALKRAQVKFQDSKESLDKITPS 184
+G P + L G TLR+ L ++++ F S+ K+ S
Sbjct: 380 --SGP-------------PQS--LYGLNLTLRKAKAPSGLDQSRIPF--SER---KLKFS 417
Query: 185 SQGNPIMVP-----LTDSMYVEGKIADADKV------------VIDIGTGFYVEKSIPDA 227
++ P+ P L + + D K V D G D
Sbjct: 418 NRFLPVASPFHSHLLVPA--SDLINKDLVKNNVSFNAKDIQIPVYDTFDG-------SDL 468
Query: 228 QDYFKRRVAFVTQQM-------EKLQFIFLLYILIF 256
+ + + E +IL F
Sbjct: 469 RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDF 504
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 33.1 bits (76), Expect = 0.083
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 21/116 (18%)
Query: 1 MSVNQSGGEGMQQIDLTKLAF-PQLTQL---KNQLDSVSFQALALSAMSVNQS------- 49
M N EG++ + L LA+ +L L N + ALA A+ +
Sbjct: 194 MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA-IALKSWPNLRELGLN 252
Query: 50 ----GGEGMQQI--DLTKLAFPQLTQLK---NQLDSVSFQALGLCFKWQGSHLREL 96
G + +KL L L+ N+++ + + L + L L
Sbjct: 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 308
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.23
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 7/26 (26%)
Query: 23 QLTQLKNQL-----DSVSFQALALSA 43
L +L+ L DS ALA+ A
Sbjct: 21 ALKKLQASLKLYADDSAP--ALAIKA 44
Score = 26.8 bits (58), Expect = 5.6
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 8/24 (33%)
Query: 106 LKLLESSNNFILKQFKEGEHCTSA 129
LK L++S LK + + SA
Sbjct: 22 LKKLQAS----LKLYADD----SA 37
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 31.0 bits (70), Expect = 0.38
Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 24/115 (20%)
Query: 20 AFPQLTQLK------NQLDSVSFQALA----LSAMSVNQSGGEGMQQIDLTKLAFPQLTQ 69
F +L+ N+L +S L +S N + + K F ++Q
Sbjct: 64 VFKFNQELEYLDLSHNKLVKISCHPTVNLKHLD-LSFNA-----FDALPICKE-FGNMSQ 116
Query: 70 LK------NQLDSVSFQAL-GLCFKWQGSHLRELFHPTTDFSYLKLLESSNNFIL 117
LK L+ S + L L E + D L+ + + I+
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 29.8 bits (67), Expect = 0.97
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 24/107 (22%)
Query: 20 AFPQLTQLK------NQLDSVSFQALA----LSAMSVNQSGGEGMQQIDLTKLAFPQLTQ 69
F L+ N+L ++S +A L +S N + + K F LT+
Sbjct: 95 VFLFNQDLEYLDVSHNRLQNISCCPMASLRHLD-LSFND-----FDVLPVCKE-FGNLTK 147
Query: 70 LK------NQLDSVSFQAL-GLCFKWQGSHLRELFHPTTDFSYLKLL 109
L + + + L L + L++
Sbjct: 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP 194
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II,
structural genomics, protein structure initiative; 2.30A
{Listeria innocua}
Length = 254
Score = 28.8 bits (65), Expect = 1.7
Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 187 GNPIMVPLTDSMYVEGKIADADKVVI----DIGTGFYVEKSIPDAQDYFKRR 234
G PI +P+ D I+ D +++ DI Y+E+ + YF R
Sbjct: 42 GFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPR 93
>3ps0_A Crispr-associated protein, CSA2; viral resistance, CAS, CASS, RNA-
RNA-recognition motif, nucleic-acid binding; 2.00A
{Sulfolobus solfataricus}
Length = 328
Score = 28.6 bits (63), Expect = 1.9
Identities = 29/238 (12%), Positives = 65/238 (27%), Gaps = 37/238 (15%)
Query: 28 KNQLDSVSFQALA-LSAMSVNQSGGEGMQQIDLTKLAFPQLTQLKNQL---DSVSFQALG 83
+ +S ++ S+N G T + +S +AL
Sbjct: 3 HHHHHMISGSVRFLVNLESLNGVESIG-NLTKHRTAPVVLKTSTGYLVRYVPVISGEALA 61
Query: 84 LCFKWQGSHLRELFHPTTDFSYLKLLESSNNFILKQFKEGEHCTSAGSEFHNCTAFTKRE 143
+ L ++ L + S+ + +F E G + +R
Sbjct: 62 ---HAYQASLVDIA----KKEGLPVGSLSSQYEFIKFSTDEALKIEGIKEPKDYNDARRF 114
Query: 144 LPSAVPLC-----GGTLRRQPNNGALKR-AQVKF------QDSKESLDKITP-------- 183
+ GG + ++R +++K E ++
Sbjct: 115 EVEVMLKDVIADVGGFM--YAGGAPVRRTSRIKLGYMIPALRGDEIPAQLEAQFHVRFSN 172
Query: 184 ---SSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFV 238
S V ++ ++Y D D + + G V+ + KR + +
Sbjct: 173 KPVSGSQAIFNVEVSSALYTFSFELDEDLIAVPSTFGEKVKGEEELERQKAKRVKSAI 230
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 27.0 bits (60), Expect = 7.5
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 18/100 (18%)
Query: 1 MSVNQSGGEGMQQI-DLTKLAFPQLTQL---KNQLDSVSFQALALSAMSVNQSGGEGMQQ 56
+ N G + ++ + + L N L S + LA S+ S +
Sbjct: 145 LRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS----VTS 200
Query: 57 IDLTKLAFPQLTQLKNQLDSVSFQALGLCFKWQGSHLREL 96
+DL+ N L S+ L F +H+ L
Sbjct: 201 LDLSA----------NLLGLKSYAELAYIFSSIPNHVVSL 230
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.385
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,732,210
Number of extensions: 209730
Number of successful extensions: 411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 404
Number of HSP's successfully gapped: 17
Length of query: 264
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,133,061
Effective search space: 710886492
Effective search space used: 710886492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)