RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3204
         (264 letters)



>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 133

 Score = 72.3 bits (177), Expect = 1e-16
 Identities = 15/84 (17%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 163 ALKRAQVKFQDSKESLDKITPSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEK 222
           A++    + +  +++L  I     G+  +VP+    +++ ++ D  +V++ +G G  ++K
Sbjct: 26  AVRATISELEILEKTLSDI-QGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIKK 84

Query: 223 SIPDAQDYFKRRVAFVTQQMEKLQ 246
           +  DA +  K +   +   ++K+ 
Sbjct: 85  NFEDAMESIKSQKNELESTLQKMG 108


>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and
           C-terminal domains {Thermus thermophilus HB8 [TaxId:
           300852]}
          Length = 58

 Score = 28.0 bits (63), Expect = 0.18
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 8/34 (23%)

Query: 190 IMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKS 223
           + VPL    +VE      + + +D  TG YV ++
Sbjct: 33  VQVPL----FVE----PGEVIKVDTRTGEYVGRA 58


>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
           {Fission yeast (Schizosaccharomyces pombe) [TaxId:
           4896]}
          Length = 344

 Score = 28.3 bits (61), Expect = 1.1
 Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 5/55 (9%)

Query: 47  NQSGGEGMQQI--DLTKLAFPQLTQLK---NQLDSVSFQALGLCFKWQGSHLREL 96
                 G   +    +KL    L  L+   N+++  + + L      +   L  L
Sbjct: 253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307


>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal
           domain {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 191

 Score = 27.1 bits (59), Expect = 2.1
 Identities = 6/41 (14%), Positives = 15/41 (36%), Gaps = 2/41 (4%)

Query: 204 IADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQMEK 244
           +++    +ID      VE      ++  +R V  +     +
Sbjct: 136 VSEEGIWIIDFP--QSVEVGEEGWREILERDVRNIITYFSR 174


>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I
           {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}
          Length = 418

 Score = 27.4 bits (59), Expect = 2.1
 Identities = 10/64 (15%), Positives = 18/64 (28%), Gaps = 3/64 (4%)

Query: 183 PSSQGNPIMVPLTDSMYVEGKIADADKVVIDIGTGFYVEKSIPDAQDYFKRRVAFVTQQM 242
            S                   +  +  +     + FY E +    +D+   R  F   + 
Sbjct: 345 DSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFV--RYCFFK-KD 401

Query: 243 EKLQ 246
           E LQ
Sbjct: 402 ENLQ 405


>d1uv7a_ d.67.4.1 (A:) General secretion pathway protein M, EpsM
          {Vibrio cholerae [TaxId: 666]}
          Length = 80

 Score = 25.0 bits (55), Expect = 3.4
 Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 7/61 (11%)

Query: 3  VNQSGGEGMQQIDLTKLAFPQLTQLKNQLDSVSFQALA--LSAMSVNQSGGEGMQQIDLT 60
          +  S  +    I+L ++  P+   ++  +  + F  L   ++ +   Q  G  +  ID+ 
Sbjct: 7  ITNSTRQ--FNIELIRVQ-PRGEMMQVWIQPLPFSQLVSWIAYLQERQ--GVSVDAIDID 61

Query: 61 K 61
          +
Sbjct: 62 R 62


>d1vmda_ c.24.1.2 (A:) Methylglyoxal synthase, MgsA {Thermotoga
           maritima [TaxId: 2336]}
          Length = 156

 Score = 24.9 bits (54), Expect = 7.2
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 204 IADADKVVIDIGTGFYVEKSIPDAQDYFKRRV 235
            + AD ++         EK   D ++  +RR+
Sbjct: 120 RSTADFLISSPLMNDVYEKIQIDYEEELERRI 151


>d1kaca_ b.21.1.1 (A:) Adenovirus fiber protein "knob" domain {Human
           adenovirus type 12 [TaxId: 28282]}
          Length = 185

 Score = 25.2 bits (55), Expect = 8.1
 Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 72  NQLDSVSFQALGLCFKWQGSHLRELF-HPTTDFSYL 106
           N + S++  +L   +    +++ + F  P+  FSY+
Sbjct: 147 NGITSLNGYSLTFMWSGLSNYINQPFSTPSCSFSYI 182


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.385 

Gapped
Lambda     K      H
   0.267   0.0381    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 897,062
Number of extensions: 39169
Number of successful extensions: 99
Number of sequences better than 10.0: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 8
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.7 bits)