BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3208
(144 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 69.3 bits (168), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%)
Query: 1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
++P +VIVIRSLV GVA+ L+PGDRL+SVNE L+N SL +AV+ LK P G+V
Sbjct: 39 LDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVH 98
Query: 61 IGVA 64
+G+
Sbjct: 99 LGIC 102
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I I ++ GG AQ D RL GDRLL+VN T+L + ++AV +LK +V +
Sbjct: 30 PGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSD-MVYLK 88
Query: 63 VAKP 66
VAKP
Sbjct: 89 VAKP 92
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
I I ++ GG A L L GD++LSVN DL NAS +QA ALK A + + I KP
Sbjct: 333 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 391
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + ++ GG A D RL GD++L+VN L + + AV ALK +V +
Sbjct: 181 PGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT-YDVVYLK 239
Query: 63 VAKP 66
VAKP
Sbjct: 240 VAKP 243
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I I ++PGG A D RL D +L VNE D+ + AV+ALK A IV++ V +
Sbjct: 91 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG-SIVRLYVMRRK 149
Query: 68 P 68
P
Sbjct: 150 P 150
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
I I ++ GG A L L GD++LSVN DL NAS +QA ALK A + + I KP
Sbjct: 40 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 98
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
I I ++ GG A L L GD++LSVN DL NAS +QA ALK A + + I KP
Sbjct: 40 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 98
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
I I ++ GG A L L GD++LSVN DL NAS +QA ALK A + + I KP
Sbjct: 32 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 90
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + ++ GG AQ D RL GDRLL VN L + ++AV LK +V +
Sbjct: 51 PGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSE-VVYLK 109
Query: 63 VAKPLPI 69
V KP I
Sbjct: 110 VGKPTTI 116
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 34/59 (57%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
I I ++ GG A L L GD++LSVN DL NAS +QA ALK A + + I KP
Sbjct: 37 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKP 95
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + S+V GG A D +L GD+LL+VN L + ++AV ALK V +
Sbjct: 30 PGDNSIYVTSIVEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSD-FVYLK 88
Query: 63 VAKP 66
VAKP
Sbjct: 89 VAKP 92
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
I + ++ GG A L L GD++LSVN DL AS +QA ALKGA + + I +P
Sbjct: 29 IFVSFILAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQTVTIIAQYQP 87
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 43.1 bits (100), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I I ++PGG A D RL D +L VNE D++ S +AV+ALK A IV++ V +
Sbjct: 41 IFITKIIPGGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALKEAGS-IVRLYVRRRR 99
Query: 68 PI 69
PI
Sbjct: 100 PI 101
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
I + ++ GG A L L GDR+LSVN +L NA+ +QA ALK A + + + +P
Sbjct: 38 IFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRP 96
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
N+T + + +V GG+A D RL+ GD++L VN D+ NA+ +AV AL G V + V
Sbjct: 27 NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNAT-QEAVAALLKCSLGTVTLEV 85
Query: 64 AK 65
+
Sbjct: 86 GR 87
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 42.7 bits (99), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + ++ GG A D +L GD+LL+VN L + ++AV ALK V +
Sbjct: 30 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTSD-FVYLK 88
Query: 63 VAKP 66
VAKP
Sbjct: 89 VAKP 92
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + ++ GG A D +L GD+LL+VN L + ++AV ALK V +
Sbjct: 29 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSD-FVYLK 87
Query: 63 VAKP 66
VAKP
Sbjct: 88 VAKP 91
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA 54
P++ I I ++PGG A +D RL D +L VNE D++ +AV+ALK A
Sbjct: 31 PDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEA 82
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
I + ++ GG A L L GDR+LSVN +L NA+ +QA ALK A + + + +P
Sbjct: 41 IFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQYRP 99
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + ++ GG A D +L GD+LL+VN L + ++AV ALK V +
Sbjct: 30 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALKNTSD-FVYLK 88
Query: 63 VAKP 66
VAKP
Sbjct: 89 VAKP 92
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Inad- Like Protein
Length = 111
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
+V+R++VPGG+A D RL GD +L + T++ + +Q Q L+
Sbjct: 40 VVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLR 84
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 42.4 bits (98), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I +++++P G A+ D R+ GDR+L+VN L A+ QAV+ L+
Sbjct: 42 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR 86
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I +++++P G A+ D R+ GDR+L+VN L A+ QAV+ L+
Sbjct: 34 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR 78
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human
Inad- Like Protein
Length = 116
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56
IVI + G A D RL GD++L VN DL N+S ++A+ AL+ P+
Sbjct: 45 IVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQ 93
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I +++++P G A+ D R+ GDR+L+VN L A+ QAV+ L+
Sbjct: 39 IYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR 83
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + ++ GG A D +L GD+LL+VN L + ++AV ALK V +
Sbjct: 35 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSD-FVYLK 93
Query: 63 VAKP 66
VAKP
Sbjct: 94 VAKP 97
>pdb|2VRF|A Chain A, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|B Chain B, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|C Chain C, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
pdb|2VRF|D Chain D, Crystal Structure Of The Human Beta-2-Syntrophin Pdz
Domain
Length = 95
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 31/53 (58%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56
N I+I + PG A L GD +LSVN TDL A+ DQAVQALK A +
Sbjct: 27 NRMPILISKIFPGLAADQSRALRLGDAILSVNGTDLRQATHDQAVQALKRAGK 79
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I +++++P G A+ D R+ GDR+L+VN L A+ QAV+ L+
Sbjct: 44 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR 88
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + ++ GG A D +L GD+LL+VN L + ++AV ALK V +
Sbjct: 30 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALKNTSD-FVYLK 88
Query: 63 VAKP 66
VAKP
Sbjct: 89 VAKP 92
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + ++ GG A D RL GD++L+VN L + + AV ALK +V +
Sbjct: 134 PGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT-YDVVYLK 192
Query: 63 VAKP 66
VAKP
Sbjct: 193 VAKP 196
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I I ++PGG A D RL D +L VNE D+ + AV+ALK A IV++ V +
Sbjct: 44 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGS-IVRLYVMRRK 102
Query: 68 P 68
P
Sbjct: 103 P 103
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + ++ GG A D +L GD+LL+VN L + ++AV ALK V +
Sbjct: 38 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSD-FVYLK 96
Query: 63 VAKP 66
VAKP
Sbjct: 97 VAKP 100
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With
Ra-Gef2 Peptide
Length = 96
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I +++++P G A+ D R+ GDR+L+VN L A+ QAV+ L+
Sbjct: 35 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR 79
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I +++++P G A+ D R+ GDR+L+VN L A+ QAV+ L+
Sbjct: 35 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR 79
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
+++ I I ++ GG A D RL D +L VNE D+ + + +AV+ALK A IV++ V
Sbjct: 39 DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVEALKEAG-SIVRLYV 97
Query: 64 AKPLPIPD 71
+ P+ +
Sbjct: 98 KRRKPVSE 105
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I I S++ GG D R+ PGD LL VN+ + N S D AV+ L+
Sbjct: 35 IYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + ++ GG A D +L GD+LL+VN L + ++AV ALK V +
Sbjct: 26 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSD-FVYLK 84
Query: 63 VAKP 66
VAKP
Sbjct: 85 VAKP 88
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I I S++ GG D R+ PGD LL VN+ + N S D AV+ L+
Sbjct: 35 IYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + ++ GG A D +L GD+LL+VN L + ++AV ALK V +
Sbjct: 36 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALKNTSD-FVYLK 94
Query: 63 VAKP 66
VAKP
Sbjct: 95 VAKP 98
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG--APRGIVKIGVAK 65
I I S++ GG D R+ PGD LL VN+ + N S D AV+ L+ + G + + VAK
Sbjct: 28 IYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQTGPISLTVAK 87
Query: 66 PL-PIPDS 72
P P S
Sbjct: 88 AWDPTPRS 95
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + ++ GG A D RL GD++L+VN L + + AV ALK +V +
Sbjct: 127 PGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT-YDVVYLK 185
Query: 63 VAKP 66
VAKP
Sbjct: 186 VAKP 189
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I I ++PGG A D RL D +L VNE D+ + AV+ALK A IV++ V +
Sbjct: 37 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGS-IVRLYVMRRK 95
Query: 68 P 68
P
Sbjct: 96 P 96
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I I S++ GG D R+ PGD LL VN+ + N S D AV+ L+
Sbjct: 35 IYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + ++ GG A D RL GD++L+VN L + + AV ALK +V +
Sbjct: 30 PGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYD-VVYLK 88
Query: 63 VAKP 66
VAKP
Sbjct: 89 VAKP 92
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + ++ GG A D RL GD++L+VN L + + AV ALK +V +
Sbjct: 124 PGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT-YDVVYLK 182
Query: 63 VAKP 66
VAKP
Sbjct: 183 VAKP 186
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I I ++PGG A D RL D +L VNE D+ + AV+ALK A IV++ V +
Sbjct: 34 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGS-IVRLYVMRRK 92
Query: 68 P 68
P
Sbjct: 93 P 93
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled
2 (Homologous To Drosophila Dsh)
Length = 100
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I I S++ GG D R+ PGD LL VN+ + N S D AV+ L+
Sbjct: 35 IYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I I S++ GG D R+ PGD LL VN+ + N S D AV+ L+
Sbjct: 35 IYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLR 79
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With
Its Inhibitor
Length = 90
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I I S++ GG D R+ PGD LL VN+ + N S D AV+ L+
Sbjct: 31 IYIGSIMKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLR 75
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I I ++PGG A D RL D +L VNE D+ + AV+ALK A IV++ V +
Sbjct: 33 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG-SIVRLYVMRRK 91
Query: 68 P 68
P
Sbjct: 92 P 92
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I I ++PGG A D RL D +L VNE D+ + AV+ALK A IV++ V +
Sbjct: 33 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG-SIVRLYVMRRK 91
Query: 68 P 68
P
Sbjct: 92 P 92
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I I S+ GG D R+ PGD LL VN+ + N S D AV+ L+ V KP
Sbjct: 31 IYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLRDI--------VHKPG 82
Query: 68 PI 69
PI
Sbjct: 83 PI 84
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I I S+ GG D R+ PGD LL VN+ + N S D AV+ L+
Sbjct: 29 IYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 73
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
I I ++PGG A D RL D +L VNE D+ + AV+ALK A IV++ V +
Sbjct: 34 IFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGS-IVRLYVMR 90
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
P + I + ++ GG A D +L GD+LL+VN L + ++AV ALK
Sbjct: 25 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALK 74
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
Length = 98
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I I S+ GG D R+ PGD LL VN+ + N S D AV+ L+
Sbjct: 31 IYIGSIXKGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLR 75
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA 54
T I ++SL+PG A LD R+ P D++L V++ ++ + V+ L+ A
Sbjct: 44 TGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNA 92
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56
I+I + G A D RL GD++L VN DL A+ D+A+ L+ P+
Sbjct: 32 IIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQ 80
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
+++ I I ++ GG A D RL D +L VNE D+ + + +AV+ALK A IV++ V
Sbjct: 29 DDSSIFITKIITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKEAG-SIVRLYV 87
Query: 64 AK 65
+
Sbjct: 88 KR 89
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
N+ I+I + G A L GD +LSVN DL++A+ D+AVQALK + +V
Sbjct: 24 NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV 79
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In
Complex With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
N+ I+I + G A L GD +LSVN DL++A+ D+AVQALK + +V
Sbjct: 24 NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV 79
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
N+ I+I + G A L GD +LSVN DL++A+ D+AVQALK + +V
Sbjct: 28 NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV 83
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
N+ I+I + G A L GD +LSVN DL++A+ D+AVQALK
Sbjct: 101 NKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK 149
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 1 MNPNET-VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQA 47
+N NE ++ I ++PGG D RL PGD+L+S+N+ + S ++A
Sbjct: 35 INRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEA 82
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
I I ++PGGVA L GD+LLSVN + ++AV+ LK A +G VK+
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLK-AAQGSVKL 84
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues
450-558)
Length = 111
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I +++++P G A D RL GDRL+ VN DL S ++ V L+
Sbjct: 41 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR 85
>pdb|1IHJ|A Chain A, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
pdb|1IHJ|B Chain B, Crystal Structure Of The N-Terminal Pdz Domain Of Inad
In Complex With A Norpa C-Terminal Peptide
Length = 98
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA 54
N T I I+ +VP A L RL GDR+LS+N D+ N++ + +K A
Sbjct: 33 NTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA 85
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I +++++P G A D RL GDRL+ VN DL S ++ V L+
Sbjct: 35 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLR 79
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I +++++P G A D RL GDRL+ VN DL S ++ V L+
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLR 104
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
Length = 106
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQAL 51
I ++S+V GG A +D RL GD+LLSV+ L S ++A + +
Sbjct: 40 IYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 83
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQAL 51
I ++S+V GG A +D RL GD+LLSV+ L S ++A + +
Sbjct: 34 IYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 77
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQAL 51
I ++S+V GG A +D RL GD+LLSV+ L S ++A + +
Sbjct: 34 IYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 77
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK------GAPRGIVKI 61
I ++S++ GG A D RL D+L++VN L + +A++ L+ G RG++++
Sbjct: 41 IFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLRRSMSTEGNKRGMIQL 100
Query: 62 GVAKPLPIPDSSCSQ 76
VA+ + S C++
Sbjct: 101 IVARRI----SRCNE 111
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 102
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI 58
N++ I + + G A LD RL GD++LSVN DL N AV + A +
Sbjct: 36 SNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAV 91
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 101
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI 58
N++ I + + G A LD RL GD++LSVN DL N AV + A +
Sbjct: 34 SNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAGYAV 89
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery
Of Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQAL 51
I ++S+V GG A +D RL GD+LLSV+ L S ++A + +
Sbjct: 40 IYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 83
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA 54
I+I SL GG+A+ + GDR+L++N + L L +A+ L+ A
Sbjct: 32 IIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMA 78
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK------GAPRGIVKI 61
I ++S++ GG A D RL D+L++VN L + +A++ L+ G RG++++
Sbjct: 38 IFVKSIINGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLRRSMSTEGNKRGMIQL 97
Query: 62 GVAKPLP 68
VA+ +
Sbjct: 98 IVARRIS 104
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA 54
N++ I + + G A LD RL GD++LSVN DL N AV + A
Sbjct: 45 NDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA 95
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I + S+ PGGV D R+ GD LL+V+ +L S +AV LK I V K L
Sbjct: 55 IYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSI----VLKAL 110
Query: 68 PIPDSSC 74
+ + S
Sbjct: 111 EVKEGSI 117
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
Length = 97
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
+VI S+ PGG A + + PGDRLLSV+ L + +A+ LK
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 78
>pdb|1NF3|C Chain C, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|D Chain D, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 128
Score = 34.7 bits (78), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
I I LVPGG+AQ L D +L VN +++ SLDQ + R ++
Sbjct: 67 IFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLI 118
>pdb|1UHP|A Chain A, Solution Structure Of Rsgi Ruh-005, A Pdz Domain In
Human Cdna, Kiaa1095
Length = 107
Score = 34.3 bits (77), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
I + +V G A + L DR++ VN DL+ A+ DQAV+A K A IV
Sbjct: 43 IFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTAKEPIV 94
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 33.9 bits (76), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
+P + I I + P G A D RL G RLL VN+ L + +AVQ L+
Sbjct: 40 DPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLR 90
>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human
Homolog Of Discs Large Protein
Length = 99
Score = 33.9 bits (76), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
I I ++ GG A L L GDR++SVN DL AS +QA ALK A + + + +P
Sbjct: 33 IFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAVTIVAQYRP 91
>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz
Length = 123
Score = 33.5 bits (75), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA 54
I I+ ++ A + L PGDR++ V+ DL +AS +QAV+A++ A
Sbjct: 61 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA 107
>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz
(Mupp-1)
Length = 103
Score = 33.5 bits (75), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA 54
I I+ ++ A + L PGDR++ V+ DL +AS +QAV+A++ A
Sbjct: 41 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA 87
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 33.1 bits (74), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI-VKI 61
P+E + I+SLV G A LD ++ GD ++SVN+T + + Q V+ + P G V +
Sbjct: 41 PDE-FLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDL 99
Query: 62 GVAKPLPIP 70
+ + P+P
Sbjct: 100 ELCRGYPLP 108
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
+N ++ V R ++ GG+ L GD +L +N T++ N S+DQ +A+K +G++
Sbjct: 32 LNEKQSCTVAR-ILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK-ETKGMIS 89
Query: 61 IGV 63
+ V
Sbjct: 90 LKV 92
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 33.1 bits (74), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK------GAPRGIVKI 61
I I+S++ GG A D RL D+L++VN L S +A++ L+ G RG++++
Sbjct: 57 IFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQL 116
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 33.1 bits (74), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
+N ++ V R ++ GG+ L GD +L +N T++ N S+DQ +A+K +G++
Sbjct: 32 LNEKQSCTVAR-ILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMK-ETKGMIS 89
Query: 61 IGV 63
+ V
Sbjct: 90 LKV 92
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 33.1 bits (74), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
+VI + PGG A + + PGDRLLSV+ L + +A+ LK
Sbjct: 137 VVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK 181
>pdb|1V62|A Chain A, Solution Structure Of The 3rd Pdz Domain Of Grip2
Length = 117
Score = 32.7 bits (73), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQAL 51
N++VI I + P V L PGD +LS++ T + + SL +A + L
Sbjct: 40 NKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLL 87
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 32.7 bits (73), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA 54
I + + GG A L GDR+LS+N D+ A D AV L A
Sbjct: 40 IFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAA 86
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated
Peptide
Length = 127
Score = 32.7 bits (73), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG 53
++I L+ GG A+ + GD +L+VN+ L + S D A++ L+G
Sbjct: 35 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRG 80
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 32.7 bits (73), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
+ I++L+PG A D RL GDR+L VN + L +AV ++
Sbjct: 38 LYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIR 82
>pdb|2DB5|A Chain A, Solution Structure Of The First Pdz Domain Of Inad-Like
Protein
Length = 128
Score = 32.7 bits (73), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLN-NASLDQAVQALKGAPRGIVKIGVAK 65
I ++ + PG VA D RL D++L++N T L+ N S QA+ AL G +++ VA+
Sbjct: 56 IFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAI-ALLQQTTGSLRLIVAR 113
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 32.7 bits (73), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG 53
++I L+ GG A+ + GD +L+VN+ L + S D A++ L+G
Sbjct: 28 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRG 73
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 32.7 bits (73), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG 53
++I L+ GG A+ + GD +L+VN+ L + S D A++ L+G
Sbjct: 30 VIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRG 75
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 32.3 bits (72), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
+VI + G VA L GD+LL+++ L++ S++ AVQ L+ +VK+ + K
Sbjct: 137 LVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKLKIRK 193
>pdb|2VWR|A Chain A, Crystal Structure Of The Second Pdz Domain Of
Numb-Binding Protein 2
Length = 95
Score = 32.3 bits (72), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
+E + I L+ GG+A D RL DR+L++N DL + + A Q ++ + V + +
Sbjct: 27 DEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGER-VNLTI 85
Query: 64 AKP 66
A+P
Sbjct: 86 ARP 88
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 32.3 bits (72), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 10 IRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG 57
I+SLV G A LD ++ GD ++SVN+T + + Q V+ + P G
Sbjct: 29 IKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIG 76
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho
Guanine Nucleotide Exchange Factor 11
Length = 93
Score = 32.3 bits (72), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
+ +++++S+ PGG A + A + GDR++ VN T + N+S + V+ +K
Sbjct: 27 GDRIVLVQSVRPGG-AAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK 74
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 32.0 bits (71), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I ++++ G A D RL GD++++VN L + ++AV LK
Sbjct: 55 IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILK 99
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad-
Like Protein
Length = 117
Score = 31.6 bits (70), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 28 GDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
GD++L V+ DL NAS +AV+A+K A +V I
Sbjct: 72 GDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFI 105
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 30.8 bits (68), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 12 SLV-PGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIP 70
SLV PG +A+ + L GD++L VN+ L + +AV+ALKG+ + ++ + A + P
Sbjct: 40 SLVEPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRISGP 98
Query: 71 DS 72
S
Sbjct: 99 SS 100
>pdb|2Q9V|A Chain A, Crystal Structure Of The C890s Mutant Of The 4th Pdz
Domain Of Human Membrane Associated Guanylate Kinase
Length = 90
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56
I I +VP G A D RL GD L+SV+ T + S VQ ++ A +
Sbjct: 29 IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAK 77
>pdb|2I0I|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I0I|C Chain C, X-Ray Crystal Structure Of Sap97 Pdz3 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 30.8 bits (68), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 30/51 (58%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI 58
I I ++ GG A L L GDR++SVN DL AS +QA ALK A + +
Sbjct: 30 IFISFILAGGPADLSGELRKGDRIISVNSVDLRAASHEQAAAALKNAGQAV 80
>pdb|2CSJ|A Chain A, Solution Structure Of N-Terminal Pdz Domain From Mouse
Tjp2
Length = 117
Score = 30.8 bits (68), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
ET IVI ++PGG A D L DR++ VN T + + AVQ L+ + + I I V
Sbjct: 44 GETSIVISDVLPGGPA--DGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGK-IAAIVV 100
Query: 64 AKP 66
+P
Sbjct: 101 KRP 103
>pdb|1X5Q|A Chain A, Solution Structure Of The First Pdz Domain Of Scribble
Homolog Protein (Hscrib)
Length = 110
Score = 30.8 bits (68), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA 54
+E + + R G A+ R+ GD+LL VN L A +AV+AL+GA
Sbjct: 45 DEGIFISRVSEEGPAARAGVRV--GDKLLEVNGVALQGAEHHEAVEALRGA 93
>pdb|2W4F|A Chain A, Crystal Structure Of The First Pdz Domain Of Human
Scrib1
Length = 97
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA 54
+E + + R G A+ R+ GD+LL VN L A +AV+AL+GA
Sbjct: 33 DEGIFISRVSEEGPAARAGVRV--GDKLLEVNGVALQGAEHHEAVEALRGA 81
>pdb|2LC6|A Chain A, Solution Structure Of Par-6 Q144cL164C
Length = 128
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQAL 51
I I LVPGG+A+ L D ++ VN ++ +LDQ +
Sbjct: 68 IFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 111
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
I ++S+ + D R+ GD++++V+ T+L + QAV+ L+
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLR 79
>pdb|1X8S|A Chain A, Structure Of The Par-6 Pdz Domain With A Pals1 Internal
Ligand
pdb|2LC7|A Chain A, Solution Structure Of The Isolated Par-6 Pdz Domain
Length = 102
Score = 29.6 bits (65), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQAL 51
I I LVPGG+A+ L D ++ VN ++ +LDQ +
Sbjct: 42 IFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 85
>pdb|1RY4|A Chain A, Nmr Structure Of The Crib-Pdz Module Of Par-6
Length = 128
Score = 29.6 bits (65), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQAL 51
I I LVPGG+A+ L D ++ VN ++ +LDQ +
Sbjct: 68 IFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 111
>pdb|1RZX|A Chain A, Crystal Structure Of A Par-6 Pdz-Peptide Complex
Length = 98
Score = 29.6 bits (65), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQAL 51
I I LVPGG+A+ L D ++ VN ++ +LDQ +
Sbjct: 40 IFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDMM 83
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 28.9 bits (63), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
M + I ++++ GG A D R+ D L+ V+ T L + A L+ +G V+
Sbjct: 30 MGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR-NTKGRVR 88
Query: 61 IGVAKPLPIPDSSCSQV 77
+ + P S +Q+
Sbjct: 89 FMIGRERPGEQSEVAQL 105
>pdb|1X45|A Chain A, Solution Structure Of The First Pdz Domain Of Amyloid
Beta A4 Precursor Protein-Binding Family A, Member 1
Length = 98
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG 53
++I +++ GG A+ +L GD+++S+N T L L +KG
Sbjct: 35 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKG 80
>pdb|1U3B|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 185
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG 53
++I +++ GG A+ +L GD+++S+N T L L +KG
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKG 76
>pdb|2IWO|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWO|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|A Chain A, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
pdb|2IWP|B Chain B, 12th Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 120
Score = 28.1 bits (61), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI 58
I I + P GVA +L GDR++++ T + QAV LK A I
Sbjct: 55 IFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSI 105
>pdb|3LGD|A Chain A, Crystal Structure Of Human Adenosine Deaminase Growth
Factor, Adenosine Deaminase Type 2 (Ada2)
pdb|3LGD|B Chain B, Crystal Structure Of Human Adenosine Deaminase Growth
Factor, Adenosine Deaminase Type 2 (Ada2)
pdb|3LGG|A Chain A, Crystal Structure Of Human Adenosine Deaminase Growth
Factor Adenosine Deaminase Type 2 (Ada2) Complexed With
Transition Analogue, Coformycin
pdb|3LGG|B Chain B, Crystal Structure Of Human Adenosine Deaminase Growth
Factor Adenosine Deaminase Type 2 (Ada2) Complexed With
Transition Analogue, Coformycin
Length = 508
Score = 27.7 bits (60), Expect = 2.2, Method: Composition-based stats.
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 55 PRGIVKIGVAKPLPIPDSSCSQ 76
PRGI++ A P P P CS+
Sbjct: 114 PRGIMQFRFAHPTPRPSEKCSK 135
>pdb|1U38|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
pdb|1U37|A Chain A, Auto-Inhibition Mechanism Of X11sMINTS FAMILY SCAFFOLD
Proteins Revealed By The Closed Conformation Of The
Tandem Pdz Domains
Length = 89
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG 53
++I +++ GG A+ +L GD+++S+N T L L +KG
Sbjct: 31 VIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKG 76
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
I I + P +A D R+ GDR++ +N ++ N ++AV L + +A+P
Sbjct: 50 IYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNR--EEAVALLTSEENKNFSLLIARP 106
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA 54
+V+ ++ GG A+ ++ GD ++++N + + +L +A AL+ A
Sbjct: 45 VVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKA 91
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 10 IRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56
+ +++PGG A A + GDR+L VN ++ A+ Q V ++ +
Sbjct: 47 VSAVLPGGAAD-RAGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEK 92
>pdb|2EDV|A Chain A, Solution Structure Of The Pdz Domain From Human Ferm And
Pdz Domain Containing 1
Length = 96
Score = 26.9 bits (58), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA 54
+ + ++ GG A +L PGD++L +N + S ++AV L+ A
Sbjct: 33 LTVVAVTAGGSAH--GKLFPGDQILQMNNEPAEDLSWERAVDILREA 77
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 10 IRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
+ +++PGG A A + GDR+L VN ++ A+ Q V ++
Sbjct: 47 VSAVLPGGAAD-RAGVRKGDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKI 61
P+E + ++S++P G A D ++ GD ++ +NE + + V+ + P G V +
Sbjct: 42 PDE-FLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNL 100
Query: 62 GVAKPLPIP 70
+ + P+P
Sbjct: 101 VLCRGYPLP 109
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 26.9 bits (58), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
I + + P G A D R+ GD LL +N L S A +K AP
Sbjct: 53 IFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAP 100
>pdb|2VZ5|A Chain A, Structure Of The Pdz Domain Of Tax1 (Human T-Cell Leukemia
Virus Type I) Binding Protein 3
Length = 139
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
I + + GG A++ A L GD+++ VN D+ + DQA + L +V++ V +
Sbjct: 66 IYVTRVSEGGPAEI-AGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 122
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
Length = 194
Score = 26.6 bits (57), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 28 GDRLLSVNETDLNNASLDQAVQALKGAPRG 57
GD++L VN D N ++AV L P+G
Sbjct: 45 GDQILRVNNVDFTNIIREEAVLFLLDLPKG 74
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
Length = 101
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 10 IRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
+ +++PGG A A + GDR+L VN ++ A+ Q V ++
Sbjct: 47 VSAVLPGGAAD-RAGVRKGDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
I ++++ GG A D R+ D L+ V+ T L + A L+ +G V+ + +
Sbjct: 113 IFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT-KGRVRFMIGR 169
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
I ++++ GG A D R+ D L+ V+ T L + A L+ +G V+ + +
Sbjct: 113 IFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNT-KGRVRFMIGR 169
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human
Zona Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human
Zona Occludens-2
Length = 88
Score = 26.2 bits (56), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I ++ + G+A D L GD +L +N T N SL A + ++ RG +++ V + L
Sbjct: 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIE-KSRGKLQLVVLRDL 81
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 26.2 bits (56), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 28 GDRLLSVNETDLNNASLDQAVQALKGAPRG 57
GD++L VN D N ++AV L P+G
Sbjct: 72 GDQILRVNNVDFTNIIREEAVLFLLDLPKG 101
>pdb|3DJ3|A Chain A, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|B Chain B, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|C Chain C, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
pdb|3DJ3|D Chain D, Crystal Structure Of C-Terminal Truncated Tip-1 (6-113)
Length = 113
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
I + + GG A++ A L GD+++ VN D+ + DQA + L +V++ V +
Sbjct: 56 IYVTRVSEGGPAEI-AGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 112
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 26.2 bits (56), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
I ++++ GG AQ D R+ D+++ V+ L + + A L+ +G V+ + +
Sbjct: 113 IFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNT-KGNVRFVIGR 169
>pdb|3DIW|A Chain A, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DIW|B Chain B, C-Terminal Beta-Catenin Bound Tip-1 Structure
pdb|3DJ1|A Chain A, Crystal Structure Of Tip-1 Wild Type
pdb|3DJ1|B Chain B, Crystal Structure Of Tip-1 Wild Type
Length = 124
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
I + + GG A++ A L GD+++ VN D+ + DQA + L +V++ V +
Sbjct: 55 IYVTRVSEGGPAEI-AGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 111
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 28 GDRLLSVNETDLNNASLDQAVQALKGAPRG 57
GD++L VN D N ++AV L P+G
Sbjct: 52 GDQILRVNNVDFTNIIREEAVLFLLDLPKG 81
>pdb|4E3B|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E3B|B Chain B, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 102
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
I + + GG A++ A L GD+++ VN D+ + DQA + L +V++ V +
Sbjct: 45 IYVTRVSEGGPAEI-AGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 101
>pdb|3GJ9|A Chain A, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|3GJ9|B Chain B, Crystal Structure Of Tip-1 In Complex With C-Terminal Of
Kir2.3
pdb|2L4S|A Chain A, Promiscuous Binding At The Crossroads Of Numerous Cancer
Pathways: Insight From The Binding Of Gip With
Glutaminase L
pdb|2L4T|A Chain A, GipGLUTAMINASE L PEPTIDE COMPLEX
Length = 124
Score = 25.8 bits (55), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
I + + GG A++ A L GD+++ VN D+ + DQA + L +V++ V +
Sbjct: 55 IYVTRVSEGGPAEI-AGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 111
>pdb|3SFJ|A Chain A, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
pdb|3SFJ|C Chain C, Crystal Structure Of Tax-Interacting Protein-1 (Tip-1) Pdz
Domain Bound To Ical36 Inhibitor Peptide
Length = 104
Score = 25.8 bits (55), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
I + + GG A++ A L GD+++ VN D+ + DQA + L +V++ V +
Sbjct: 47 IYVTRVSEGGPAEI-AGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 103
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule
Complex With Connexin-45 Peptide
Length = 468
Score = 25.8 bits (55), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 28 GDRLLSVNETDLNNASLDQAVQALKGAPRG 57
GD++L VN D N ++AV L P+G
Sbjct: 44 GDQILRVNNVDFTNIIREEAVLFLLDLPKG 73
>pdb|2KG2|A Chain A, Solution Structure Of A Pdz Protein
Length = 124
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
I + + GG A++ A L GD+++ VN D+ + DQA + L +V++ V +
Sbjct: 55 IYVTRVSEGGPAEI-AGLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTR 111
>pdb|1X6D|A Chain A, Solution Structures Of The Pdz Domain Of Human
Interleukin- 16
Length = 119
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA--PR 56
VI + + P G+A + + G+ +LS+N L + A+ L+ A PR
Sbjct: 43 VITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPR 94
>pdb|3SUZ|A Chain A, Crystal Structure Of Rat Mint2 Ppc
Length = 287
Score = 25.8 bits (55), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI-VKIGVAKP 66
+++ +++ GG A +L GD+++S+N T L L +KG VK+ +
Sbjct: 218 VILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSC 277
Query: 67 LPIPDS 72
P+ ++
Sbjct: 278 PPVTET 283
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA 54
I I ++P A A L GD++L+VN+ D + +AV+ LK A
Sbjct: 43 IFISKVIPDSDAH-RAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTA 88
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 28 GDRLLSVNETDLNNASLDQAVQALKGAPRG 57
GD++L VN D N ++AV L P+G
Sbjct: 47 GDQILRVNNVDFTNIIREEAVLFLLDLPKG 76
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQAL 51
++I +V GG A+ L GD +L +N ++ +++ L
Sbjct: 50 VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLL 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.128 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,063,233
Number of Sequences: 62578
Number of extensions: 79685
Number of successful extensions: 273
Number of sequences better than 100.0: 158
Number of HSP's better than 100.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 164
length of query: 144
length of database: 14,973,337
effective HSP length: 89
effective length of query: 55
effective length of database: 9,403,895
effective search space: 517214225
effective search space used: 517214225
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 46 (22.3 bits)