Query psy3208
Match_columns 144
No_of_seqs 166 out of 1384
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 19:05:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00595 PDZ: PDZ domain (Also 99.2 5E-11 1.1E-15 78.5 7.9 57 6-64 25-81 (81)
2 cd00136 PDZ PDZ domain, also c 99.0 3.6E-09 7.8E-14 67.2 8.4 57 6-63 13-69 (70)
3 KOG3550|consensus 99.0 1.1E-09 2.4E-14 81.0 6.4 60 5-65 114-173 (207)
4 KOG3571|consensus 98.9 5E-09 1.1E-13 89.5 7.1 75 3-77 274-350 (626)
5 KOG3553|consensus 98.9 3.8E-10 8.3E-15 77.9 0.3 62 3-67 56-117 (124)
6 cd00988 PDZ_CTP_protease PDZ d 98.8 1.4E-08 3E-13 66.8 7.2 61 5-66 12-72 (85)
7 PF13180 PDZ_2: PDZ domain; PD 98.8 2.1E-08 4.5E-13 66.2 7.3 60 6-68 14-74 (82)
8 smart00228 PDZ Domain present 98.8 5.5E-08 1.2E-12 63.3 8.7 59 6-66 26-84 (85)
9 KOG3549|consensus 98.8 1.4E-08 2.9E-13 83.8 6.5 64 5-69 79-142 (505)
10 cd00992 PDZ_signaling PDZ doma 98.8 6.6E-08 1.4E-12 62.9 8.3 56 6-63 26-81 (82)
11 KOG3209|consensus 98.7 2.7E-08 5.9E-13 87.9 6.1 64 4-67 672-736 (984)
12 cd00991 PDZ_archaeal_metallopr 98.7 2.5E-07 5.5E-12 60.7 8.4 61 5-68 9-70 (79)
13 KOG1892|consensus 98.6 3.5E-07 7.5E-12 83.2 9.3 62 5-67 959-1020(1629)
14 cd00989 PDZ_metalloprotease PD 98.5 7.9E-07 1.7E-11 57.5 8.1 60 5-67 11-70 (79)
15 KOG3209|consensus 98.5 3.7E-07 8.1E-12 80.9 7.0 61 4-65 921-981 (984)
16 KOG3551|consensus 98.5 1.4E-07 3E-12 78.8 3.9 61 3-64 107-167 (506)
17 cd00987 PDZ_serine_protease PD 98.5 1.7E-06 3.7E-11 57.1 8.4 60 5-67 23-83 (90)
18 KOG3580|consensus 98.4 1.1E-06 2.3E-11 77.1 8.9 64 2-68 36-99 (1027)
19 cd00986 PDZ_LON_protease PDZ d 98.4 2E-06 4.2E-11 56.1 7.8 60 5-68 7-67 (79)
20 TIGR00225 prc C-terminal pepti 98.3 2.3E-06 4.9E-11 70.3 8.3 62 6-68 62-123 (334)
21 cd00990 PDZ_glycyl_aminopeptid 98.3 2.7E-06 5.9E-11 55.2 7.1 57 5-67 11-68 (80)
22 PLN00049 carboxyl-terminal pro 98.3 2.9E-06 6.3E-11 71.3 8.7 60 7-67 103-162 (389)
23 KOG3606|consensus 98.3 3.4E-06 7.3E-11 67.8 8.3 60 5-65 193-252 (358)
24 COG0793 Prc Periplasmic protea 98.3 3.1E-06 6.8E-11 71.6 7.4 60 6-66 112-171 (406)
25 KOG3552|consensus 98.2 1.7E-06 3.7E-11 78.6 5.3 58 6-66 75-132 (1298)
26 PRK10779 zinc metallopeptidase 98.1 6.6E-06 1.4E-10 70.3 6.6 60 7-69 222-281 (449)
27 TIGR00054 RIP metalloprotease 98.1 6.3E-06 1.4E-10 69.9 6.0 61 6-69 203-263 (420)
28 PRK11186 carboxy-terminal prot 98.0 1.5E-05 3.3E-10 71.2 7.8 61 6-66 255-320 (667)
29 TIGR02037 degP_htrA_DO peripla 98.0 2.3E-05 4.9E-10 66.4 8.5 60 6-68 362-422 (428)
30 PRK10139 serine endoprotease; 98.0 2.2E-05 4.7E-10 67.4 7.8 59 6-68 390-448 (455)
31 TIGR02038 protease_degS peripl 98.0 2.4E-05 5.1E-10 64.9 7.8 60 6-68 278-338 (351)
32 TIGR01713 typeII_sec_gspC gene 98.0 2.6E-05 5.6E-10 62.4 7.6 61 5-68 190-251 (259)
33 PRK10139 serine endoprotease; 98.0 2.8E-05 6E-10 66.7 8.2 62 5-69 289-351 (455)
34 PRK10898 serine endoprotease; 98.0 2.3E-05 4.9E-10 65.2 7.4 61 5-68 278-339 (353)
35 TIGR02037 degP_htrA_DO peripla 98.0 3.2E-05 7E-10 65.5 8.0 62 5-69 256-318 (428)
36 KOG3580|consensus 98.0 1.2E-05 2.6E-10 70.6 5.3 69 5-74 218-286 (1027)
37 PRK10942 serine endoprotease; 97.9 3.4E-05 7.4E-10 66.5 7.8 59 6-68 408-466 (473)
38 KOG3651|consensus 97.9 3E-05 6.5E-10 63.3 6.8 58 8-66 32-89 (429)
39 KOG3605|consensus 97.8 1.5E-05 3.2E-10 70.3 3.7 64 8-71 675-739 (829)
40 PRK10942 serine endoprotease; 97.8 0.0001 2.2E-09 63.6 8.5 62 5-69 310-372 (473)
41 PRK10779 zinc metallopeptidase 97.6 0.00012 2.6E-09 62.6 6.2 59 8-69 128-187 (449)
42 TIGR02860 spore_IV_B stage IV 97.6 0.00018 3.8E-09 60.9 6.9 56 16-74 123-178 (402)
43 KOG0609|consensus 97.5 0.00015 3.3E-09 62.7 5.4 58 7-65 147-204 (542)
44 KOG3129|consensus 97.4 0.00057 1.2E-08 53.1 6.2 71 7-78 140-211 (231)
45 TIGR00054 RIP metalloprotease 97.3 0.00052 1.1E-08 58.3 6.0 57 6-66 128-184 (420)
46 KOG3542|consensus 97.3 0.00033 7.1E-09 62.7 4.2 58 5-65 561-618 (1283)
47 TIGR03279 cyano_FeS_chp putati 97.2 0.00085 1.8E-08 57.3 5.9 49 10-64 2-50 (433)
48 KOG3938|consensus 97.1 0.00059 1.3E-08 54.9 4.3 65 4-68 147-212 (334)
49 PF04495 GRASP55_65: GRASP55/6 97.0 0.0034 7.3E-08 45.8 6.9 59 5-66 42-101 (138)
50 COG3480 SdrC Predicted secrete 96.8 0.0058 1.3E-07 50.3 7.5 59 6-68 130-189 (342)
51 PF14685 Tricorn_PDZ: Tricorn 96.8 0.01 2.2E-07 40.1 7.2 61 5-67 11-80 (88)
52 PRK09681 putative type II secr 96.5 0.0082 1.8E-07 48.6 6.5 56 11-69 209-268 (276)
53 COG0265 DegQ Trypsin-like seri 96.4 0.016 3.5E-07 47.7 7.6 61 5-68 269-330 (347)
54 KOG1320|consensus 96.2 0.017 3.7E-07 49.9 6.9 60 6-68 398-458 (473)
55 KOG1421|consensus 96.0 0.0085 1.9E-07 53.8 4.4 63 8-74 305-367 (955)
56 COG3975 Predicted protease wit 95.8 0.013 2.9E-07 51.0 4.5 54 5-68 461-514 (558)
57 KOG3605|consensus 95.8 0.0077 1.7E-07 53.7 3.0 46 9-55 759-804 (829)
58 KOG0606|consensus 95.2 0.038 8.2E-07 52.0 5.4 54 8-63 660-713 (1205)
59 KOG3532|consensus 94.9 0.093 2E-06 47.5 6.8 58 4-65 396-453 (1051)
60 KOG1738|consensus 94.3 0.072 1.6E-06 47.3 4.7 60 5-65 224-283 (638)
61 COG3031 PulC Type II secretory 94.0 0.15 3.3E-06 40.7 5.5 60 7-69 208-268 (275)
62 PF12812 PDZ_1: PDZ-like domai 92.1 0.52 1.1E-05 31.0 5.2 47 6-55 30-76 (78)
63 KOG4407|consensus 88.7 0.21 4.4E-06 48.1 1.3 56 7-64 144-199 (1973)
64 COG0750 Predicted membrane-ass 87.8 2.2 4.7E-05 35.1 6.7 52 11-65 134-188 (375)
65 KOG3834|consensus 84.3 2.8 6.1E-05 36.1 5.7 59 5-66 14-73 (462)
66 KOG4371|consensus 74.0 3.6 7.9E-05 39.2 3.4 45 25-70 1187-1231(1332)
67 KOG3834|consensus 69.8 13 0.00027 32.2 5.5 53 8-64 111-165 (462)
68 KOG1421|consensus 63.3 18 0.00038 33.4 5.4 48 5-56 861-908 (955)
69 KOG4371|consensus 57.9 12 0.00026 35.9 3.5 60 5-65 1269-1328(1332)
70 KOG2921|consensus 52.0 24 0.00052 30.4 4.1 48 4-53 218-265 (484)
71 PF11874 DUF3394: Domain of un 40.0 48 0.001 25.3 3.8 29 5-34 121-149 (183)
72 PRK13810 orotate phosphoribosy 29.2 1.2E+02 0.0026 23.0 4.5 38 22-59 116-153 (187)
73 KOG0572|consensus 23.3 2.1E+02 0.0045 24.9 5.2 41 27-67 355-395 (474)
74 PF03522 KCl_Cotrans_1: K-Cl C 22.3 41 0.00089 18.1 0.6 13 118-130 11-23 (30)
75 PRK06781 amidophosphoribosyltr 22.0 2.1E+02 0.0045 25.0 5.2 41 27-67 347-387 (471)
76 PRK06388 amidophosphoribosyltr 21.3 1.6E+02 0.0035 25.7 4.3 41 27-67 355-395 (474)
77 KOG4407|consensus 20.4 43 0.00094 33.3 0.7 55 8-65 98-152 (1973)
No 1
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.24 E-value=5e-11 Score=78.47 Aligned_cols=57 Identities=35% Similarity=0.498 Sum_probs=53.9
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEE
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA 64 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~ 64 (144)
.++||..|.++++|+++| |+.||+|++|||+++.++++.+++.+++.+. ..++|+|.
T Consensus 25 ~~~~V~~v~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~~-~~v~L~V~ 81 (81)
T PF00595_consen 25 KGVFVSSVVPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSAS-NPVTLTVQ 81 (81)
T ss_dssp EEEEEEEECTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHST-SEEEEEEE
T ss_pred CCEEEEEEeCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCCC-CcEEEEEC
Confidence 589999999999999999 9999999999999999999999999999997 58998874
No 2
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=99.00 E-value=3.6e-09 Score=67.23 Aligned_cols=57 Identities=33% Similarity=0.453 Sum_probs=52.4
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEE
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V 63 (144)
.+++|..|.++++|+.+| |++||+|++||+.++.++++.++.++++......+.|+|
T Consensus 13 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v 69 (70)
T cd00136 13 GGVVVLSVEPGSPAERAG-LQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV 69 (70)
T ss_pred CCEEEEEeCCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence 389999999999999988 999999999999999999999999999998656788876
No 3
>KOG3550|consensus
Probab=98.99 E-value=1.1e-09 Score=80.95 Aligned_cols=60 Identities=40% Similarity=0.559 Sum_probs=56.4
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r 65 (144)
..+|||++|+|||.|++-|.|+-||++++|||+++++-.|+.++.+|+... +.|.|+|+-
T Consensus 114 nspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~-gsvklvvry 173 (207)
T KOG3550|consen 114 NSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAV-GSVKLVVRY 173 (207)
T ss_pred CCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhc-CcEEEEEec
Confidence 568999999999999999999999999999999999999999999999985 799999864
No 4
>KOG3571|consensus
Probab=98.87 E-value=5e-09 Score=89.48 Aligned_cols=75 Identities=37% Similarity=0.497 Sum_probs=65.4
Q ss_pred CCCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC--CCeEEEEEEcCCCCCCCccccc
Q psy3208 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP--RGIVKIGVAKPLPIPDSSCSQV 77 (144)
Q Consensus 3 ~~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~--~~~V~L~V~r~~~~~~~~~~~~ 77 (144)
.++.||||..|.++|+-+++|||.+||.|++||.+++++++.++||..|+..- .++++|+|.+.+++....+...
T Consensus 274 rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk~~DP~~q~~fTi 350 (626)
T KOG3571|consen 274 RGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAKCWDPNPQSYFTI 350 (626)
T ss_pred CCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEeeccCCCCcccccC
Confidence 46889999999999999999999999999999999999999999999998763 2579999999887665555433
No 5
>KOG3553|consensus
Probab=98.87 E-value=3.8e-10 Score=77.93 Aligned_cols=62 Identities=24% Similarity=0.335 Sum_probs=55.5
Q ss_pred CCCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67 (144)
Q Consensus 3 ~~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~ 67 (144)
.++.||||.+|..|+||+.+| |+.+|+|++|||-.+.-++|+.++..|++.+ .+.+.|.|..
T Consensus 56 ytD~GiYvT~V~eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~~--vl~mLVaR~~ 117 (124)
T KOG3553|consen 56 YTDKGIYVTRVSEGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKEE--VLRMLVARQS 117 (124)
T ss_pred cCCccEEEEEeccCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHhH--HHHHHHHhhc
Confidence 368899999999999999999 9999999999999999999999999999853 6777776644
No 6
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.85 E-value=1.4e-08 Score=66.85 Aligned_cols=61 Identities=23% Similarity=0.452 Sum_probs=54.6
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~ 66 (144)
..+++|..+.++++|+++| |++||+|++||+..+.++++.++..+++......+.|++.|.
T Consensus 12 ~~~~~V~~v~~~s~a~~~g-l~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~ 72 (85)
T cd00988 12 DGGLVITSVLPGSPAAKAG-IKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG 72 (85)
T ss_pred CCeEEEEEecCCCCHHHcC-CCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence 4679999999999999998 999999999999999999888888888775556899999886
No 7
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.82 E-value=2.1e-08 Score=66.20 Aligned_cols=60 Identities=28% Similarity=0.456 Sum_probs=50.2
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHc-CCCCeEEEEEEcCCC
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG-APRGIVKIGVAKPLP 68 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~-~~~~~V~L~V~r~~~ 68 (144)
.+++|..|.+++||+++| |++||.|++||+.++.++ .+...++.. .++..+.|+|.|...
T Consensus 14 ~g~~V~~V~~~spA~~aG-l~~GD~I~~ing~~v~~~--~~~~~~l~~~~~g~~v~l~v~R~g~ 74 (82)
T PF13180_consen 14 GGVVVVSVIPGSPAAKAG-LQPGDIILAINGKPVNSS--EDLVNILSKGKPGDTVTLTVLRDGE 74 (82)
T ss_dssp SSEEEEEESTTSHHHHTT-S-TTEEEEEETTEESSSH--HHHHHHHHCSSTTSEEEEEEEETTE
T ss_pred CeEEEEEeCCCCcHHHCC-CCCCcEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECCE
Confidence 589999999999999999 999999999999999554 677777744 344699999999764
No 8
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.80 E-value=5.5e-08 Score=63.27 Aligned_cols=59 Identities=36% Similarity=0.430 Sum_probs=53.7
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~ 66 (144)
.+++|..|.++++|+++| |++||+|++||++.+.++++.+....++..+ ..+.|++.|+
T Consensus 26 ~~~~i~~v~~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~~-~~~~l~i~r~ 84 (85)
T smart00228 26 GGVVVSSVVPGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKAG-GKVTLTVLRG 84 (85)
T ss_pred CCEEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhCC-CeEEEEEEeC
Confidence 689999999999999999 9999999999999999999998888888764 5888888774
No 9
>KOG3549|consensus
Probab=98.78 E-value=1.4e-08 Score=83.83 Aligned_cols=64 Identities=22% Similarity=0.306 Sum_probs=58.5
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI 69 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~ 69 (144)
..+++|++|.+..+|+..|.|-+||-|++|||+.+..++|++++++||+.+ +.|+|+|..-...
T Consensus 79 n~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAG-deVtlTV~~lr~A 142 (505)
T KOG3549|consen 79 NLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAG-DEVTLTVKHLRAA 142 (505)
T ss_pred CccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcC-CEEEEEeHhhhcC
Confidence 468999999999999999999999999999999999999999999999997 7999999654433
No 10
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.77 E-value=6.6e-08 Score=62.89 Aligned_cols=56 Identities=32% Similarity=0.470 Sum_probs=50.7
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEE
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V 63 (144)
.+++|..|.++++|++.+ |++||+|++||+.++..+++.++..+++... ..+.|+|
T Consensus 26 ~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~~~~~~~~~l~~~~-~~v~l~v 81 (82)
T cd00992 26 GGIFVSRVEPGGPAERGG-LRVGDRILEVNGVSVEGLTHEEAVELLKNSG-DEVTLTV 81 (82)
T ss_pred CCeEEEEECCCChHHhCC-CCCCCEEEEECCEEcCccCHHHHHHHHHhCC-CeEEEEE
Confidence 579999999999999988 9999999999999999999999999999875 4677765
No 11
>KOG3209|consensus
Probab=98.70 E-value=2.7e-08 Score=87.89 Aligned_cols=64 Identities=28% Similarity=0.447 Sum_probs=58.3
Q ss_pred CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCC
Q psy3208 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPL 67 (144)
Q Consensus 4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~ 67 (144)
.+++|+|..|++.|+|+.+|||+.||.|+.|+|+++.+.+|.+++.++.... ++.|.|+|+|..
T Consensus 672 p~qpi~iG~Iv~lGaAe~DGRL~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv 736 (984)
T KOG3209|consen 672 PGQPIYIGAIVPLGAAEEDGRLREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRRKV 736 (984)
T ss_pred CCCeeEEeeeeecccccccCcccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEeeee
Confidence 4679999999999999999999999999999999999999999999997764 358999998844
No 12
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.65 E-value=2.5e-07 Score=60.73 Aligned_cols=61 Identities=25% Similarity=0.375 Sum_probs=51.8
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLP 68 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~ 68 (144)
..|++|..|.++++|+++| |+.||+|++||+..+.++ .+...++... ....+.|++.|...
T Consensus 9 ~~Gv~V~~V~~~spa~~aG-L~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r~g~ 70 (79)
T cd00991 9 VAGVVIVGVIVGSPAENAV-LHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLPSTT 70 (79)
T ss_pred CCcEEEEEECCCChHHhcC-CCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEECCE
Confidence 4689999999999999999 999999999999999754 6777888765 24688999988653
No 13
>KOG1892|consensus
Probab=98.56 E-value=3.5e-07 Score=83.24 Aligned_cols=62 Identities=35% Similarity=0.483 Sum_probs=58.0
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~ 67 (144)
..||||++|++|++|+.+|||..||++++|||+++.+++.+.+..++.+.+ ..|.|.|.+..
T Consensus 959 klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg-~vV~leVaKqg 1020 (1629)
T KOG1892|consen 959 KLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTG-NVVHLEVAKQG 1020 (1629)
T ss_pred ccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccC-CeEEEehhhhh
Confidence 579999999999999999999999999999999999999999999999986 68999997743
No 14
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.53 E-value=7.9e-07 Score=57.49 Aligned_cols=60 Identities=27% Similarity=0.398 Sum_probs=50.5
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~ 67 (144)
...++|..+.++++|++.| |++||.|++|||.++.++ .++..++.......+.+++.|..
T Consensus 11 ~~~~~V~~v~~~s~a~~~g-l~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~~ 70 (79)
T cd00989 11 PIEPVIGEVVPGSPAAKAG-LKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERNG 70 (79)
T ss_pred ccCcEEEeECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEECC
Confidence 3458999999999999999 999999999999999754 67778887764457889988755
No 15
>KOG3209|consensus
Probab=98.47 E-value=3.7e-07 Score=80.87 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=53.6
Q ss_pred CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65 (144)
Q Consensus 4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r 65 (144)
+..++||-++...|||.++||+++||+|+.|||.+..+|+|..|+.+||+.+ ..|.|.++|
T Consensus 921 ynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~gg-~~vll~Lr~ 981 (984)
T KOG3209|consen 921 YNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQGG-RRVLLLLRR 981 (984)
T ss_pred cccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHhCC-eEEEEEecc
Confidence 4678999999999999999999999999999999999999999999999975 344444443
No 16
>KOG3551|consensus
Probab=98.47 E-value=1.4e-07 Score=78.75 Aligned_cols=61 Identities=41% Similarity=0.475 Sum_probs=55.8
Q ss_pred CCCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEE
Q psy3208 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA 64 (144)
Q Consensus 3 ~~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~ 64 (144)
++..+|.|++|.+|-+|++.+.|..||.|++|||..+.+.+|+++++.||+.+ ..|.|.|.
T Consensus 107 eNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraG-keV~levK 167 (506)
T KOG3551|consen 107 ENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAG-KEVLLEVK 167 (506)
T ss_pred ccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhC-ceeeeeee
Confidence 35789999999999999999999999999999999999999999999999997 56666664
No 17
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.46 E-value=1.7e-06 Score=57.08 Aligned_cols=60 Identities=25% Similarity=0.323 Sum_probs=50.0
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPL 67 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~ 67 (144)
..|++|..|.++++|+++| |++||.|++||+..+.++ .++..++.... ...+.|++.|..
T Consensus 23 ~~g~~V~~v~~~s~a~~~g-l~~GD~I~~Ing~~i~~~--~~~~~~l~~~~~~~~i~l~v~r~g 83 (90)
T cd00987 23 TKGVLVASVDPGSPAAKAG-LKPGDVILAVNGKPVKSV--ADLRRALAELKPGDKVTLTVLRGG 83 (90)
T ss_pred CCEEEEEEECCCCHHHHcC-CCcCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence 3589999999999999999 999999999999999765 55667776652 358899998765
No 18
>KOG3580|consensus
Probab=98.44 E-value=1.1e-06 Score=77.08 Aligned_cols=64 Identities=34% Similarity=0.485 Sum_probs=57.3
Q ss_pred CCCCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP 68 (144)
Q Consensus 2 ~~~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~ 68 (144)
..+..-|+|+.|.||||| .|+|+.||+|+.|||+++++..|.-+++.|+.++ ....++|.|+..
T Consensus 36 ~~getSiViSDVlpGGPA--eG~LQenDrvvMVNGvsMenv~haFAvQqLrksg-K~A~ItvkRprk 99 (1027)
T KOG3580|consen 36 ENGETSIVISDVLPGGPA--EGLLQENDRVVMVNGVSMENVLHAFAVQQLRKSG-KVAAITVKRPRK 99 (1027)
T ss_pred cCCceeEEEeeccCCCCc--ccccccCCeEEEEcCcchhhhHHHHHHHHHHhhc-cceeEEecccce
Confidence 345678999999999999 5889999999999999999999999999999996 678899988664
No 19
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.42 E-value=2e-06 Score=56.14 Aligned_cols=60 Identities=18% Similarity=0.274 Sum_probs=49.4
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHc-CCCCeEEEEEEcCCC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG-APRGIVKIGVAKPLP 68 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~-~~~~~V~L~V~r~~~ 68 (144)
..|++|..|.++++|+. + |++||.|++||+..+.+ +++...+++. .....+.|++.|...
T Consensus 7 ~~Gv~V~~V~~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g~ 67 (79)
T cd00986 7 YHGVYVTSVVEGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREEK 67 (79)
T ss_pred ecCEEEEEECCCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECCE
Confidence 35899999999999986 7 99999999999999975 4677788875 334588999988654
No 20
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=98.34 E-value=2.3e-06 Score=70.33 Aligned_cols=62 Identities=27% Similarity=0.419 Sum_probs=53.9
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP 68 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~ 68 (144)
.+++|..|.+++||+++| |+.||+|++|||.++.+++..++..+++......+.|+|.|...
T Consensus 62 ~~~~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g~ 123 (334)
T TIGR00225 62 GEIVIVSPFEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAGK 123 (334)
T ss_pred CEEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCCC
Confidence 468999999999999999 99999999999999998877777788876555689999988654
No 21
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.34 E-value=2.7e-06 Score=55.23 Aligned_cols=57 Identities=23% Similarity=0.243 Sum_probs=45.4
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPL 67 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~ 67 (144)
+.++.|..|.++++|+.+| |++||+|++||+..+.+ ..+ +++.. ....+.|++.|..
T Consensus 11 ~~~~~V~~V~~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~---~l~~~~~~~~v~l~v~r~g 68 (80)
T cd00990 11 EGLGKVTFVRDDSPADKAG-LVAGDELVAVNGWRVDA--LQD---RLKEYQAGDPVELTVFRDD 68 (80)
T ss_pred CCcEEEEEECCCChHHHhC-CCCCCEEEEECCEEhHH--HHH---HHHhcCCCCEEEEEEEECC
Confidence 4479999999999999999 99999999999999975 233 34432 3358889988765
No 22
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=98.33 E-value=2.9e-06 Score=71.28 Aligned_cols=60 Identities=27% Similarity=0.431 Sum_probs=53.6
Q ss_pred cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208 7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67 (144)
Q Consensus 7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~ 67 (144)
+++|..|.+++||+++| |+.||+|++|||+++.+++..++..+++......|.|+|.|..
T Consensus 103 g~~V~~V~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~g 162 (389)
T PLN00049 103 GLVVVAPAPGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRGP 162 (389)
T ss_pred cEEEEEeCCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEECC
Confidence 79999999999999999 9999999999999999988888888887765568899888754
No 23
>KOG3606|consensus
Probab=98.31 E-value=3.4e-06 Score=67.76 Aligned_cols=60 Identities=30% Similarity=0.398 Sum_probs=53.2
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r 65 (144)
-+||||+++++||.|+..|-|-++|+|++|||+.+.+.+.+++-.++-... ..+-++|.-
T Consensus 193 vpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvANs-hNLIiTVkP 252 (358)
T KOG3606|consen 193 VPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVANS-HNLIITVKP 252 (358)
T ss_pred cCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhcc-cceEEEecc
Confidence 469999999999999999999999999999999999999999998888774 566666653
No 24
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.25 E-value=3.1e-06 Score=71.60 Aligned_cols=60 Identities=23% Similarity=0.450 Sum_probs=56.9
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~ 66 (144)
.++.|.++.+++||+++| |++||.|+.|||.++.+++-++++..|+..+...|+|++.|.
T Consensus 112 ~~~~V~s~~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~ 171 (406)
T COG0793 112 GGVKVVSPIDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA 171 (406)
T ss_pred CCcEEEecCCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence 578999999999999999 999999999999999999999999999999878999999996
No 25
>KOG3552|consensus
Probab=98.22 E-value=1.7e-06 Score=78.56 Aligned_cols=58 Identities=24% Similarity=0.538 Sum_probs=55.0
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~ 66 (144)
.+++|..|.+||++ .|+|++||+|++||+.++.+..++.+++++|.+. ..|.|+|+++
T Consensus 75 rPviVr~VT~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRace-~sv~ltV~qP 132 (1298)
T KOG3552|consen 75 RPVIVRFVTEGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRACE-SSVNLTVCQP 132 (1298)
T ss_pred CceEEEEecCCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHHh-hhcceEEecc
Confidence 68999999999999 6889999999999999999999999999999995 7999999997
No 26
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=98.11 E-value=6.6e-06 Score=70.25 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=51.6
Q ss_pred cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208 7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI 69 (144)
Q Consensus 7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~ 69 (144)
+..|..|.++++|+++| |++||+|++||++++.++ ++..+.++..++..+.++|.|....
T Consensus 222 ~~vV~~V~~~SpA~~AG-L~~GDvIl~Ing~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~~ 281 (449)
T PRK10779 222 EPVLAEVQPNSAASKAG-LQAGDRIVKVDGQPLTQW--QTFVTLVRDNPGKPLALEIERQGSP 281 (449)
T ss_pred CcEEEeeCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCEEEEEEEECCEE
Confidence 47899999999999999 999999999999999654 7788888776556899999987754
No 27
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=98.09 E-value=6.3e-06 Score=69.88 Aligned_cols=61 Identities=25% Similarity=0.282 Sum_probs=53.0
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCC
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPI 69 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~ 69 (144)
.++.|..|.++++|+++| |++||+|++||++++.++ ++....++..+...+.++|.|....
T Consensus 203 ~g~vV~~V~~~SpA~~aG-L~~GD~Iv~Vng~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g~~ 263 (420)
T TIGR00054 203 IEPVLSDVTPNSPAEKAG-LKEGDYIQSINGEKLRSW--TDFVSAVKENPGKSMDIKVERNGET 263 (420)
T ss_pred cCcEEEEECCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCceEEEEEECCEE
Confidence 368999999999999999 999999999999999754 7888888876656899999987754
No 28
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.05 E-value=1.5e-05 Score=71.20 Aligned_cols=61 Identities=31% Similarity=0.459 Sum_probs=52.3
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeC--C---EeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVN--E---TDLNNASLDQAVQALKGAPRGIVKIGVAKP 66 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VN--g---~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~ 66 (144)
..++|..|.+|+||++++.|++||+|++|| | +++.++..++++.+|+...+..|.|+|.|.
T Consensus 255 ~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~ 320 (667)
T PRK11186 255 DYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA 320 (667)
T ss_pred CeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence 368999999999999983399999999999 4 355678888999999988767899999874
No 29
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=98.05 E-value=2.3e-05 Score=66.39 Aligned_cols=60 Identities=27% Similarity=0.367 Sum_probs=52.1
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCC
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLP 68 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~ 68 (144)
.|++|..|.++++|+++| |++||.|++||++++.++ .+..++++.. ....+.|+|.|...
T Consensus 362 ~Gv~V~~V~~~SpA~~aG-L~~GDvI~~Ing~~V~s~--~d~~~~l~~~~~g~~v~l~v~R~g~ 422 (428)
T TIGR02037 362 KGVVVTKVVSGSPAARAG-LQPGDVILSVNQQPVSSV--AELRKVLDRAKKGGRVALLILRGGA 422 (428)
T ss_pred CceEEEEeCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence 689999999999999999 999999999999999754 7788888864 34689999998753
No 30
>PRK10139 serine endoprotease; Provisional
Probab=98.01 E-value=2.2e-05 Score=67.36 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=52.1
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP 68 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~ 68 (144)
.|++|..|.++++|+++| |++||+|++||++++.++ ++..+++++.+ ..+.|+|.|...
T Consensus 390 ~Gv~V~~V~~~spA~~aG-L~~GD~I~~Ing~~v~~~--~~~~~~l~~~~-~~v~l~v~R~g~ 448 (455)
T PRK10139 390 KGIKIDEVVKGSPAAQAG-LQKDDVIIGVNRDRVNSI--AEMRKVLAAKP-AIIALQIVRGNE 448 (455)
T ss_pred CceEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCC-CeEEEEEEECCE
Confidence 479999999999999999 999999999999999654 78888888765 688999988763
No 31
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=98.01 E-value=2.4e-05 Score=64.93 Aligned_cols=60 Identities=22% Similarity=0.302 Sum_probs=50.9
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHc-CCCCeEEEEEEcCCC
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG-APRGIVKIGVAKPLP 68 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~-~~~~~V~L~V~r~~~ 68 (144)
.|++|..|.++++|+++| |++||.|++||++++.++ .+..+.++. .....+.|+|.|...
T Consensus 278 ~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~g~ 338 (351)
T TIGR02038 278 RGIVITGVDPNGPAARAG-ILVRDVILKYDGKDVIGA--EELMDRIAETRPGSKVMVTVLRQGK 338 (351)
T ss_pred ccceEeecCCCChHHHCC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence 589999999999999999 999999999999999764 667777765 334689999998764
No 32
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=98.00 E-value=2.6e-05 Score=62.42 Aligned_cols=61 Identities=20% Similarity=0.134 Sum_probs=52.1
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCCC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPLP 68 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~~ 68 (144)
..|+.|..+.++++|++.| |+.||.|++|||+++.++ +++.+++..... ..+.|+|.|...
T Consensus 190 ~~G~~v~~v~~~s~a~~aG-Lr~GDvIv~ING~~i~~~--~~~~~~l~~~~~~~~v~l~V~R~G~ 251 (259)
T TIGR01713 190 LEGYRLNPGKDPSLFYKSG-LQDGDIAVALNGLDLRDP--EQAFQALQMLREETNLTLTVERDGQ 251 (259)
T ss_pred eeEEEEEecCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCeEEEEEEECCE
Confidence 3699999999999999999 999999999999999765 667777777533 589999999764
No 33
>PRK10139 serine endoprotease; Provisional
Probab=98.00 E-value=2.8e-05 Score=66.73 Aligned_cols=62 Identities=18% Similarity=0.243 Sum_probs=52.1
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHc-CCCCeEEEEEEcCCCC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG-APRGIVKIGVAKPLPI 69 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~-~~~~~V~L~V~r~~~~ 69 (144)
..|++|..|.++++|+++| |++||.|++|||+++.++ .+....+.. .....+.|+|.|....
T Consensus 289 ~~Gv~V~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~V~R~G~~ 351 (455)
T PRK10139 289 QRGAFVSEVLPNSGSAKAG-VKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNGKP 351 (455)
T ss_pred CCceEEEEECCCChHHHCC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 4589999999999999999 999999999999999765 777777765 3346899999887643
No 34
>PRK10898 serine endoprotease; Provisional
Probab=98.00 E-value=2.3e-05 Score=65.15 Aligned_cols=61 Identities=20% Similarity=0.265 Sum_probs=50.4
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHc-CCCCeEEEEEEcCCC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG-APRGIVKIGVAKPLP 68 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~-~~~~~V~L~V~r~~~ 68 (144)
..|++|..|.++++|+++| |+.||+|++||++++.++ .+....+.. .....+.|+|.|...
T Consensus 278 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Ing~~V~s~--~~l~~~l~~~~~g~~v~l~v~R~g~ 339 (353)
T PRK10898 278 LQGIVVNEVSPDGPAAKAG-IQVNDLIISVNNKPAISA--LETMDQVAEIRPGSVIPVVVMRDDK 339 (353)
T ss_pred CCeEEEEEECCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCE
Confidence 3699999999999999999 999999999999999654 555666655 334589999998764
No 35
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.97 E-value=3.2e-05 Score=65.46 Aligned_cols=62 Identities=23% Similarity=0.337 Sum_probs=51.0
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCCC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLPI 69 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~~ 69 (144)
..|++|..|.+++||+++| |+.||+|++|||..+.++ .+...++... ....+.|+|.|....
T Consensus 256 ~~Gv~V~~V~~~spA~~aG-L~~GDvI~~Vng~~i~~~--~~~~~~l~~~~~g~~v~l~v~R~g~~ 318 (428)
T TIGR02037 256 QRGALVAQVLPGSPAEKAG-LKAGDVILSVNGKPISSF--ADLRRAIGTLKPGKKVTLGILRKGKE 318 (428)
T ss_pred CCceEEEEccCCCChHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECCEE
Confidence 3689999999999999999 999999999999999765 5566666553 335899999886643
No 36
>KOG3580|consensus
Probab=97.96 E-value=1.2e-05 Score=70.62 Aligned_cols=69 Identities=23% Similarity=0.302 Sum_probs=61.0
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCCCCCcc
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSSC 74 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~~~~~~ 74 (144)
...|||+.+...|.|+++|.|+.||.|++|||+..++|+..++..+|.++. +.+.|+|.|....+...+
T Consensus 218 gSqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~-GKL~lvVlRD~~qtLiNi 286 (1027)
T KOG3580|consen 218 GSQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSR-GKLQLVVLRDSQQTLINI 286 (1027)
T ss_pred cchhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhcc-CceEEEEEecCCceeeec
Confidence 346899999999999999999999999999999999999999999999985 789999998766544433
No 37
>PRK10942 serine endoprotease; Provisional
Probab=97.94 E-value=3.4e-05 Score=66.46 Aligned_cols=59 Identities=19% Similarity=0.353 Sum_probs=52.4
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP 68 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~ 68 (144)
.|++|..|.++++|+++| |++||+|++||++++.++ ++..++++..+ ..+.|+|.|...
T Consensus 408 ~gvvV~~V~~~S~A~~aG-L~~GDvIv~VNg~~V~s~--~dl~~~l~~~~-~~v~l~V~R~g~ 466 (473)
T PRK10942 408 KGVVVDNVKPGTPAAQIG-LKKGDVIIGANQQPVKNI--AELRKILDSKP-SVLALNIQRGDS 466 (473)
T ss_pred CCeEEEEeCCCChHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhCC-CeEEEEEEECCE
Confidence 479999999999999999 999999999999999764 88888888865 689999998763
No 38
>KOG3651|consensus
Probab=97.93 E-value=3e-05 Score=63.33 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=53.7
Q ss_pred EEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66 (144)
Q Consensus 8 i~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~ 66 (144)
+||.+|..+.||+++|+++.||.|++|||+++.+.+.-++.++|+... ..|.++.-+.
T Consensus 32 lYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~-~eV~IhyNKL 89 (429)
T KOG3651|consen 32 LYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSL-NEVKIHYNKL 89 (429)
T ss_pred EEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhc-cceEEEehhc
Confidence 699999999999999999999999999999999999999999999985 6888888653
No 39
>KOG3605|consensus
Probab=97.83 E-value=1.5e-05 Score=70.34 Aligned_cols=64 Identities=28% Similarity=0.468 Sum_probs=56.1
Q ss_pred EEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCC-eEEEEEEcCCCCCC
Q psy3208 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIGVAKPLPIPD 71 (144)
Q Consensus 8 i~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~-~V~L~V~r~~~~~~ 71 (144)
++|.....+|||++.|+|..||+|++|||.++.++...-+..+||+.++. .|+|+|+++.+..+
T Consensus 675 VViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQT~VkltiV~cpPV~~ 739 (829)
T KOG3605|consen 675 VVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQTAVKLNIVSCPPVTT 739 (829)
T ss_pred HHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcccccceEEEEEecCCCceE
Confidence 35667888999999999999999999999999999999999999999875 68999988766543
No 40
>PRK10942 serine endoprotease; Provisional
Probab=97.81 E-value=0.0001 Score=63.58 Aligned_cols=62 Identities=11% Similarity=0.158 Sum_probs=51.6
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCCC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLPI 69 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~~ 69 (144)
..|++|..|.++++|+++| |+.||+|++|||..+.++ .+....+... ....+.|+|.|....
T Consensus 310 ~~GvlV~~V~~~SpA~~AG-L~~GDvIl~InG~~V~s~--~dl~~~l~~~~~g~~v~l~v~R~G~~ 372 (473)
T PRK10942 310 QRGAFVSQVLPNSSAAKAG-IKAGDVITSLNGKPISSF--AALRAQVGTMPVGSKLTLGLLRDGKP 372 (473)
T ss_pred CCceEEEEECCCChHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECCeE
Confidence 4689999999999999999 999999999999999765 6666676554 335899999887654
No 41
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=97.63 E-value=0.00012 Score=62.60 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=47.0
Q ss_pred EEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcC-CCCeEEEEEEcCCCC
Q psy3208 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKPLPI 69 (144)
Q Consensus 8 i~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~-~~~~V~L~V~r~~~~ 69 (144)
-+|..|.+++||+++| |++||+|++|||+++.++ ++....+... +...+.++|.|....
T Consensus 128 ~lV~~V~~~SpA~kAG-Lk~GDvI~~vnG~~V~~~--~~l~~~v~~~~~g~~v~v~v~R~gk~ 187 (449)
T PRK10779 128 PVVGEIAPNSIAAQAQ-IAPGTELKAVDGIETPDW--DAVRLALVSKIGDESTTITVAPFGSD 187 (449)
T ss_pred ccccccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhccCCceEEEEEeCCcc
Confidence 3689999999999999 999999999999999876 4554444333 335799999887653
No 42
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=97.62 E-value=0.00018 Score=60.94 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=46.0
Q ss_pred CChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCCCCCcc
Q psy3208 16 GGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSSC 74 (144)
Q Consensus 16 gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~~~~~~ 74 (144)
++||+.+| |+.||.|++||+.++..+ +++.++++......+.|+|.|........+
T Consensus 123 ~SPAa~AG-Lq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R~Ge~~tv~V 178 (402)
T TIGR02860 123 HSPGEEAG-IQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIERGGKIIETVI 178 (402)
T ss_pred CCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEECCEEEEEEE
Confidence 58999999 999999999999999655 788889988766789999999775433333
No 43
>KOG0609|consensus
Probab=97.53 E-value=0.00015 Score=62.74 Aligned_cols=58 Identities=24% Similarity=0.429 Sum_probs=54.5
Q ss_pred cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208 7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65 (144)
Q Consensus 7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r 65 (144)
.++|.+|..||.+++.|.|+.||.|++|||+++.+....++..+++... ++++++|.-
T Consensus 147 ~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~-G~itfkiiP 204 (542)
T KOG0609|consen 147 KVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSR-GSITFKIIP 204 (542)
T ss_pred ccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCC-CcEEEEEcc
Confidence 5999999999999999999999999999999999999999999999996 899998853
No 44
>KOG3129|consensus
Probab=97.36 E-value=0.00057 Score=53.11 Aligned_cols=71 Identities=23% Similarity=0.251 Sum_probs=51.5
Q ss_pred cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCC-HHHHHHHHHcCCCCeEEEEEEcCCCCCCCcccccc
Q psy3208 7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNAS-LDQAVQALKGAPRGIVKIGVAKPLPIPDSSCSQVS 78 (144)
Q Consensus 7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t-~~e~v~ll~~~~~~~V~L~V~r~~~~~~~~~~~~~ 78 (144)
=++|..|.+++||+.+| |+.||.|+++..+.-.+.. ........+......+.++|.|........++|..
T Consensus 140 Fa~V~sV~~~SPA~~aG-l~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g~~v~L~ltP~~ 211 (231)
T KOG3129|consen 140 FAVVDSVVPGSPADEAG-LCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREGQKVVLSLTPKK 211 (231)
T ss_pred eEEEeecCCCChhhhhC-cccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCCCEEEEEeCccc
Confidence 47999999999999999 9999999998776665544 23333344444335899999998865555555443
No 45
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.31 E-value=0.00052 Score=58.30 Aligned_cols=57 Identities=23% Similarity=0.272 Sum_probs=47.6
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~ 66 (144)
.+.+|..|.+++||+++| |++||.|+++||..+.++ .+..+.+.... +++.+.+.|.
T Consensus 128 ~g~~V~~V~~~SpA~~AG-L~~GDvI~~vng~~v~~~--~dl~~~ia~~~-~~v~~~I~r~ 184 (420)
T TIGR00054 128 VGPVIELLDKNSIALEAG-IEPGDEILSVNGNKIPGF--KDVRQQIADIA-GEPMVEILAE 184 (420)
T ss_pred CCceeeccCCCCHHHHcC-CCCCCEEEEECCEEcCCH--HHHHHHHHhhc-ccceEEEEEe
Confidence 577899999999999999 999999999999999765 66666666665 6777777764
No 46
>KOG3542|consensus
Probab=97.25 E-value=0.00033 Score=62.68 Aligned_cols=58 Identities=26% Similarity=0.394 Sum_probs=52.6
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r 65 (144)
.-||||..|.|++.|++.| |+-||+|++|||++.++.+...+..+|++. ..+.|+|..
T Consensus 561 GfgifV~~V~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn--thLtltvKt 618 (1283)
T KOG3542|consen 561 GFGIFVAEVFPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN--THLTLTVKT 618 (1283)
T ss_pred cceeEEeeecCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC--ceEEEEEec
Confidence 4589999999999999999 999999999999999999999999999986 367777754
No 47
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=97.18 E-value=0.00085 Score=57.30 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=40.3
Q ss_pred EEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEE
Q psy3208 10 IRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA 64 (144)
Q Consensus 10 Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~ 64 (144)
|..|.++++|+++| |++||+|++|||+.+.+| .+....+.. ..+.|+|.
T Consensus 2 I~~V~pgSpAe~AG-Le~GD~IlsING~~V~Dw--~D~~~~l~~---e~l~L~V~ 50 (433)
T TIGR03279 2 ISAVLPGSIAEELG-FEPGDALVSINGVAPRDL--IDYQFLCAD---EELELEVL 50 (433)
T ss_pred cCCcCCCCHHHHcC-CCCCCEEEEECCEECCCH--HHHHHHhcC---CcEEEEEE
Confidence 67899999999999 999999999999999765 566555532 46888886
No 48
>KOG3938|consensus
Probab=97.14 E-value=0.00059 Score=54.87 Aligned_cols=65 Identities=18% Similarity=0.309 Sum_probs=55.4
Q ss_pred CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCC-eEEEEEEcCCC
Q psy3208 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIGVAKPLP 68 (144)
Q Consensus 4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~-~V~L~V~r~~~ 68 (144)
+..-.||+.|.+++.-++.-.+++||.|-+|||.++.+|.|.++..+||..+.+ ..+|.+..+..
T Consensus 147 G~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~ftlrLiePk~ 212 (334)
T KOG3938|consen 147 GAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETFTLRLIEPKS 212 (334)
T ss_pred CcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCeeEEEeecccc
Confidence 333469999999999999888999999999999999999999999999999753 66777665543
No 49
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=97.00 E-value=0.0034 Score=45.82 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=45.1
Q ss_pred CCcEEEEEEcCCChhhhcCCcCC-CCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIP-GDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~-GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~ 66 (144)
..++-|-.|.|++||+.+| |++ .|.|+.+++..+.+. ++..++++...+.++.|.|-..
T Consensus 42 ~~~~~Vl~V~p~SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~~v~~~~~~~l~L~Vyns 101 (138)
T PF04495_consen 42 EEGWHVLRVAPNSPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFELVEANENKPLQLYVYNS 101 (138)
T ss_dssp CCEEEEEEE-TTSHHHHTT---TTTEEEEEETTCE--ST--CHHHHHHHHTTTS-EEEEEEET
T ss_pred cceEEEeEecCCCHHHHCC-ccccccEEEEccceecCCH--HHHHHHHHHcCCCcEEEEEEEC
Confidence 5578999999999999999 998 599999999888754 5678888888777999999543
No 50
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=96.83 E-value=0.0058 Score=50.28 Aligned_cols=59 Identities=14% Similarity=0.252 Sum_probs=49.5
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCCC
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPLP 68 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~~ 68 (144)
.|+|+..+..++++ .|.|+.||.|.+|||.++... ++...+++..+. +.|++...|...
T Consensus 130 ~gvyv~~v~~~~~~--~gkl~~gD~i~avdg~~f~s~--~e~i~~v~~~k~Gd~VtI~~~r~~~ 189 (342)
T COG3480 130 AGVYVLSVIDNSPF--KGKLEAGDTIIAVDGEPFTSS--DELIDYVSSKKPGDEVTIDYERHNE 189 (342)
T ss_pred eeEEEEEccCCcch--hceeccCCeEEeeCCeecCCH--HHHHHHHhccCCCCeEEEEEEeccC
Confidence 48999999999999 677999999999999999654 788888887754 589999987443
No 51
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=96.76 E-value=0.01 Score=40.15 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=39.7
Q ss_pred CCcEEEEEEcCCChh--------hhcC-CcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208 5 ETVIVIRSLVPGGVA--------QLDA-RLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A--------~~~G-rL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~ 67 (144)
..+..|.+|.++-++ .+-| .++.||.|++|||+++... .....+|.......|.|+|.+..
T Consensus 11 ~~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~--~~~~~lL~~~agk~V~Ltv~~~~ 80 (88)
T PF14685_consen 11 NGGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTAD--ANPYRLLEGKAGKQVLLTVNRKP 80 (88)
T ss_dssp TTEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTT--B-HHHHHHTTTTSEEEEEEE-ST
T ss_pred CCEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCC--CCHHHHhcccCCCEEEEEEecCC
Confidence 356889999998443 3333 3679999999999999754 34567888877679999998754
No 52
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=96.54 E-value=0.0082 Score=48.60 Aligned_cols=56 Identities=14% Similarity=0.316 Sum_probs=41.2
Q ss_pred EEEcCCChh---hhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCCCC
Q psy3208 11 RSLVPGGVA---QLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPLPI 69 (144)
Q Consensus 11 s~V~~gg~A---~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~~~ 69 (144)
=++.||..+ .+.| |+.||.+++|||+++.+. +++.++++...+ ..++|+|.|.+..
T Consensus 209 Yrl~Pgkd~~lF~~~G-Lq~GDva~sING~dL~D~--~qa~~l~~~L~~~tei~ltVeRdGq~ 268 (276)
T PRK09681 209 YAVKPGADRSLFDASG-FKEGDIAIALNQQDFTDP--RAMIALMRQLPSMDSIQLTVLRKGAR 268 (276)
T ss_pred EEECCCCcHHHHHHcC-CCCCCEEEEeCCeeCCCH--HHHHHHHHHhccCCeEEEEEEECCEE
Confidence 345566544 3578 999999999999999876 555566655543 4799999998753
No 53
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.016 Score=47.66 Aligned_cols=61 Identities=18% Similarity=0.229 Sum_probs=49.5
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC-CCeEEEEEEcCCC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKPLP 68 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~-~~~V~L~V~r~~~ 68 (144)
..|++|..+.+++||+++| ++.||.|+++||.++.+. .+....+.... ...+.+++.|...
T Consensus 269 ~~G~~V~~v~~~spa~~ag-i~~Gdii~~vng~~v~~~--~~l~~~v~~~~~g~~v~~~~~r~g~ 330 (347)
T COG0265 269 AAGAVVLGVLPGSPAAKAG-IKAGDIITAVNGKPVASL--SDLVAAVASNRPGDEVALKLLRGGK 330 (347)
T ss_pred CCceEEEecCCCChHHHcC-CCCCCEEEEECCEEccCH--HHHHHHHhccCCCCEEEEEEEECCE
Confidence 4579999999999999999 999999999999999765 44555554443 4589999988754
No 54
>KOG1320|consensus
Probab=96.20 E-value=0.017 Score=49.91 Aligned_cols=60 Identities=17% Similarity=0.343 Sum_probs=49.6
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCCC
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPLP 68 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~~ 68 (144)
++++|+.|++++++...+ +.+||+|++|||+++.+. .++..+++.+.. +.|.+...|...
T Consensus 398 q~v~is~Vlp~~~~~~~~-~~~g~~V~~vng~~V~n~--~~l~~~i~~~~~~~~v~vl~~~~~e 458 (473)
T KOG1320|consen 398 QLVLVSQVLPGSINGGYG-LKPGDQVVKVNGKPVKNL--KHLYELIEECSTEDKVAVLDRRSAE 458 (473)
T ss_pred eEEEEEEeccCCCccccc-ccCCCEEEEECCEEeech--HHHHHHHHhcCcCceEEEEEecCcc
Confidence 479999999999999999 999999999999999988 557888888852 256666666544
No 55
>KOG1421|consensus
Probab=96.04 E-value=0.0085 Score=53.84 Aligned_cols=63 Identities=27% Similarity=0.373 Sum_probs=51.0
Q ss_pred EEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCCCCCcc
Q psy3208 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSSC 74 (144)
Q Consensus 8 i~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~~~~~~ 74 (144)
+.|+.|.++|+|++. |++||.+++||+..+.++ ..+.+++...-.+.+.|+|.|........+
T Consensus 305 LvV~~vL~~gpa~k~--Le~GDillavN~t~l~df--~~l~~iLDegvgk~l~LtI~Rggqelel~v 367 (955)
T KOG1421|consen 305 LVVETVLPEGPAEKK--LEPGDILLAVNSTCLNDF--EALEQILDEGVGKNLELTIQRGGQELELTV 367 (955)
T ss_pred EEEEEeccCCchhhc--cCCCcEEEEEcceehHHH--HHHHHHHhhccCceEEEEEEeCCEEEEEEE
Confidence 588999999999876 999999999999988655 667778876655789999999886444333
No 56
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=95.79 E-value=0.013 Score=51.04 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=39.2
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLP 68 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~ 68 (144)
.....|..|.++|||+.+| |.+||+|++|||.+-. +-+-..+..+.+++.|...
T Consensus 461 ~g~~~i~~V~~~gPA~~AG-l~~Gd~ivai~G~s~~---------l~~~~~~d~i~v~~~~~~~ 514 (558)
T COG3975 461 GGHEKITFVFPGGPAYKAG-LSPGDKIVAINGISDQ---------LDRYKVNDKIQVHVFREGR 514 (558)
T ss_pred CCeeEEEecCCCChhHhcc-CCCccEEEEEcCcccc---------ccccccccceEEEEccCCc
Confidence 3467999999999999999 9999999999998221 1111223566777665443
No 57
>KOG3605|consensus
Probab=95.78 E-value=0.0077 Score=53.70 Aligned_cols=46 Identities=28% Similarity=0.467 Sum_probs=41.9
Q ss_pred EEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC
Q psy3208 9 VIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55 (144)
Q Consensus 9 ~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~ 55 (144)
+|=++..||.|++.| +|+|.+|++|||+++....|+..+++|...-
T Consensus 759 iICSLlRGGIAERGG-VRVGHRIIEINgQSVVA~pHekIV~lLs~aV 804 (829)
T KOG3605|consen 759 IICSLLRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVQLLSNAV 804 (829)
T ss_pred EeehhhcccchhccC-ceeeeeEEEECCceEEeccHHHHHHHHHHhh
Confidence 455678999999999 9999999999999999999999999998774
No 58
>KOG0606|consensus
Probab=95.18 E-value=0.038 Score=51.98 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=47.2
Q ss_pred EEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEE
Q psy3208 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63 (144)
Q Consensus 8 i~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V 63 (144)
-.|-+|..+++|..+| |+.+|.|..|||.++.+..|.++++++.+.++ .|.+.+
T Consensus 660 h~v~sv~egsPA~~ag-ls~~DlIthvnge~v~gl~H~ev~~Lll~~gn-~v~~~t 713 (1205)
T KOG0606|consen 660 HSVGSVEEGSPAFEAG-LSAGDLITHVNGEPVHGLVHTEVMELLLKSGN-KVTLRT 713 (1205)
T ss_pred eeeeeecCCCCccccC-CCccceeEeccCcccchhhHHHHHHHHHhcCC-eeEEEe
Confidence 4678899999999999 99999999999999999999999999998764 444444
No 59
>KOG3532|consensus
Probab=94.89 E-value=0.093 Score=47.47 Aligned_cols=58 Identities=21% Similarity=0.359 Sum_probs=47.3
Q ss_pred CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65 (144)
Q Consensus 4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r 65 (144)
+...+-|..|.++.+|+++. +++||.+++||++++.. ..++...++... +.|+..+.|
T Consensus 396 ~~~~v~v~tv~~ns~a~k~~-~~~gdvlvai~~~pi~s--~~q~~~~~~s~~-~~~~~l~~~ 453 (1051)
T KOG3532|consen 396 TNRAVKVCTVEDNSLADKAA-FKPGDVLVAINNVPIRS--ERQATRFLQSTT-GDLTVLVER 453 (1051)
T ss_pred CceEEEEEEecCCChhhHhc-CCCcceEEEecCccchh--HHHHHHHHHhcc-cceEEEEee
Confidence 35567899999999999999 99999999999999954 477888888875 555555544
No 60
>KOG1738|consensus
Probab=94.29 E-value=0.072 Score=47.33 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=50.5
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r 65 (144)
+...+|+.+.++++|+....|..||++++||++-+.+|++.-++.-++.... -|.++|.+
T Consensus 224 dg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~s-gi~l~lkK 283 (638)
T KOG1738|consen 224 DGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPA-GIELTLKK 283 (638)
T ss_pred CCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcc-cceeeeec
Confidence 4456788899999999999999999999999999999999999998888863 45555543
No 61
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=93.97 E-value=0.15 Score=40.69 Aligned_cols=60 Identities=15% Similarity=0.125 Sum_probs=43.2
Q ss_pred cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC-CeEEEEEEcCCCC
Q psy3208 7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKPLPI 69 (144)
Q Consensus 7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~-~~V~L~V~r~~~~ 69 (144)
|...+-..+++.=+..| |+.||..+++|+..+.+ .+++.++++...+ ..+.|+|.|.+..
T Consensus 208 Gyr~~pgkd~slF~~sg-lq~GDIavaiNnldltd--p~~m~~llq~l~~m~s~qlTv~R~G~r 268 (275)
T COG3031 208 GYRFEPGKDGSLFYKSG-LQRGDIAVAINNLDLTD--PEDMFRLLQMLRNMPSLQLTVIRRGKR 268 (275)
T ss_pred EEEecCCCCcchhhhhc-CCCcceEEEecCcccCC--HHHHHHHHHhhhcCcceEEEEEecCcc
Confidence 33444444556667788 99999999999999854 3566666666643 3789999998754
No 62
>PF12812 PDZ_1: PDZ-like domain
Probab=92.06 E-value=0.52 Score=30.96 Aligned_cols=47 Identities=21% Similarity=0.203 Sum_probs=38.5
Q ss_pred CcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCC
Q psy3208 6 TVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55 (144)
Q Consensus 6 ~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~ 55 (144)
.+.++.....++++...+ +..+-.|.+||++++.+. ++.++.+++.+
T Consensus 30 ~~gv~v~~~~g~~~~~~~-i~~g~iI~~Vn~kpt~~L--d~f~~vvk~ip 76 (78)
T PF12812_consen 30 VGGVYVAVSGGSLAFAGG-ISKGFIITSVNGKPTPDL--DDFIKVVKKIP 76 (78)
T ss_pred CCEEEEEecCCChhhhCC-CCCCeEEEeECCcCCcCH--HHHHHHHHhCC
Confidence 346666777888888777 999999999999999766 78888888765
No 63
>KOG4407|consensus
Probab=88.67 E-value=0.21 Score=48.15 Aligned_cols=56 Identities=27% Similarity=0.472 Sum_probs=49.8
Q ss_pred cEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEE
Q psy3208 7 VIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA 64 (144)
Q Consensus 7 gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~ 64 (144)
-|||..|.+.++|..+. |+.||+++.||..++.++...+++.++++.+ ..+.|.|.
T Consensus 144 T~~~~eV~~n~~~~~a~-LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~-~~~~~~~~ 199 (1973)
T KOG4407|consen 144 TIFIKEVQANGPAHYAN-LQTGDRVLMVNNQPIAGIAYSTIVSMIKQTP-AVLTLHVV 199 (1973)
T ss_pred hhhhhhhccCChhHHHh-hhccceeEEeecCcccchhhhhhhhhhccCC-CCCCceec
Confidence 37999999999999998 9999999999999999999999999999986 45566663
No 64
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=87.79 E-value=2.2 Score=35.10 Aligned_cols=52 Identities=27% Similarity=0.436 Sum_probs=40.1
Q ss_pred EEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCe---EEEEEEc
Q psy3208 11 RSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI---VKIGVAK 65 (144)
Q Consensus 11 s~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~---V~L~V~r 65 (144)
..+...++|..++ ++.||+++++|+..+..+ .+....+....... +.+.+.|
T Consensus 134 ~~v~~~s~a~~a~-l~~Gd~iv~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~i~~~~ 188 (375)
T COG0750 134 GEVAPKSAAALAG-LRPGDRIVAVDGEKVASW--DDVRRLLVAAAGDVFNLLTILVIR 188 (375)
T ss_pred eecCCCCHHHHcC-CCCCCEEEeECCEEccCH--HHHHHHHHhccCCcccceEEEEEe
Confidence 3688899999999 999999999999999765 55555555443334 6777777
No 65
>KOG3834|consensus
Probab=84.29 E-value=2.8 Score=36.09 Aligned_cols=59 Identities=24% Similarity=0.196 Sum_probs=46.8
Q ss_pred CCcEEEEEEcCCChhhhcCCcCC-CCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIP-GDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~-GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~ 66 (144)
-+|.-|.+|..+++|+++| |.+ -|-|++|||..+. ...+....+++...+ .|+|+|--.
T Consensus 14 teg~hvlkVqedSpa~~ag-lepffdFIvSI~g~rL~-~dnd~Lk~llk~~se-kVkltv~n~ 73 (462)
T KOG3834|consen 14 TEGYHVLKVQEDSPAHKAG-LEPFFDFIVSINGIRLN-KDNDTLKALLKANSE-KVKLTVYNS 73 (462)
T ss_pred ceeEEEEEeecCChHHhcC-cchhhhhhheeCccccc-CchHHHHHHHHhccc-ceEEEEEec
Confidence 5688899999999999999 555 5889999999995 445667777887764 499988543
No 66
>KOG4371|consensus
Probab=74.01 E-value=3.6 Score=39.17 Aligned_cols=45 Identities=31% Similarity=0.448 Sum_probs=40.0
Q ss_pred cCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCCCCC
Q psy3208 25 LIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIP 70 (144)
Q Consensus 25 L~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~~~~ 70 (144)
|+.||.++.+||+-++...|.+++.+++..+ +.|.|-|.|+.+..
T Consensus 1187 ~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~-~~~~~~~~r~~~~~ 1231 (1332)
T KOG4371|consen 1187 IRVGDVLLYVNGIAVEGKVHQEVVAMLRGGG-DRVVLGVQRPPPAY 1231 (1332)
T ss_pred cchhhhhhhccceeeechhhHHHHHHHhccC-ceEEEEeecCCccc
Confidence 8999999999999999999999999999886 78999999876543
No 67
>KOG3834|consensus
Probab=69.79 E-value=13 Score=32.22 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=39.9
Q ss_pred EEEEEEcCCChhhhcCCcC-CCCEEEee-CCEeCCCCCHHHHHHHHHcCCCCeEEEEEE
Q psy3208 8 IVIRSLVPGGVAQLDARLI-PGDRLLSV-NETDLNNASLDQAVQALKGAPRGIVKIGVA 64 (144)
Q Consensus 8 i~Is~V~~gg~A~~~GrL~-~GD~Il~V-Ng~~l~~~t~~e~v~ll~~~~~~~V~L~V~ 64 (144)
.=|-+|.+.++|+++| |+ -.|.|+-+ +.+. ...++...+|.....+.+.|.|-
T Consensus 111 wHvl~V~p~SPaalAg-l~~~~DYivG~~~~~~---~~~eDl~~lIeshe~kpLklyVY 165 (462)
T KOG3834|consen 111 WHVLSVEPNSPAALAG-LRPYTDYIVGIWDAVM---HEEEDLFTLIESHEGKPLKLYVY 165 (462)
T ss_pred eeeeecCCCCHHHhcc-cccccceEecchhhhc---cchHHHHHHHHhccCCCcceeEe
Confidence 4577899999999999 77 77999877 4432 33467778888776678888873
No 68
>KOG1421|consensus
Probab=63.28 E-value=18 Score=33.41 Aligned_cols=48 Identities=23% Similarity=0.164 Sum_probs=41.7
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCC
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~ 56 (144)
..|+|+.....|+||.+ + |+.-..|.+|||+...+. ++.+.+++..+.
T Consensus 861 p~gvyvt~rg~gspalq-~-l~aa~fitavng~~t~~l--ddf~~~~~~ipd 908 (955)
T KOG1421|consen 861 PEGVYVTSRGYGSPALQ-M-LRAAHFITAVNGHDTNTL--DDFYHMLLEIPD 908 (955)
T ss_pred CCceEEeecccCChhHh-h-cchheeEEEecccccCcH--HHHHHHHhhCCC
Confidence 36899999999999998 6 999999999999998554 888888888863
No 69
>KOG4371|consensus
Probab=57.91 E-value=12 Score=35.93 Aligned_cols=60 Identities=27% Similarity=0.389 Sum_probs=47.3
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r 65 (144)
..|+||..+...+.|...|+++.||+++..++.++.+.+......-++-. .+++.+++.|
T Consensus 1269 s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v-~~p~~~~~~~ 1328 (1332)
T KOG4371|consen 1269 SDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLV-QGPVQITVTR 1328 (1332)
T ss_pred CCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhc-cCchhheehh
Confidence 45899999999999999999999999999999999988775554444433 2566666655
No 70
>KOG2921|consensus
Probab=52.00 E-value=24 Score=30.41 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=36.6
Q ss_pred CCCcEEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHc
Q psy3208 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG 53 (144)
Q Consensus 4 ~~~gi~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~ 53 (144)
...|+.|..|...+|+.--..|.+||+|.++||.++... ++....++.
T Consensus 218 ~g~gV~Vtev~~~Spl~gprGL~vgdvitsldgcpV~~v--~dW~ecl~t 265 (484)
T KOG2921|consen 218 HGEGVTVTEVPSVSPLFGPRGLSVGDVITSLDGCPVHKV--SDWLECLAT 265 (484)
T ss_pred cCceEEEEeccccCCCcCcccCCccceEEecCCcccCCH--HHHHHHHHh
Confidence 356899999999888754434999999999999999754 445555554
No 71
>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.
Probab=39.97 E-value=48 Score=25.34 Aligned_cols=29 Identities=10% Similarity=0.057 Sum_probs=25.3
Q ss_pred CCcEEEEEEcCCChhhhcCCcCCCCEEEee
Q psy3208 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSV 34 (144)
Q Consensus 5 ~~gi~Is~V~~gg~A~~~GrL~~GD~Il~V 34 (144)
+..+.|..|..|++|+++| +..+.+|.+|
T Consensus 121 ~~~~~Vd~v~fgS~A~~~g-~d~d~~I~~v 149 (183)
T PF11874_consen 121 GGKVIVDEVEFGSPAEKAG-IDFDWEITEV 149 (183)
T ss_pred CCEEEEEecCCCCHHHHcC-CCCCcEEEEE
Confidence 3458999999999999999 9999988775
No 72
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=29.23 E-value=1.2e+02 Score=22.95 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=32.3
Q ss_pred cCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeE
Q psy3208 22 DARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59 (144)
Q Consensus 22 ~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V 59 (144)
.+.+..|++++-|+++--.+-+-.++++++++.+...+
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~ 153 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIK 153 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEE
Confidence 35588999999999999999999999999999864333
No 73
>KOG0572|consensus
Probab=23.26 E-value=2.1e+02 Score=24.87 Aligned_cols=41 Identities=24% Similarity=0.369 Sum_probs=36.0
Q ss_pred CCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208 27 PGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67 (144)
Q Consensus 27 ~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~ 67 (144)
.|-+|+-|++--+.+.|-.+.++++|..+.+.|.+.+..+.
T Consensus 355 ~GKrvvlVDDSIVRGtTs~~IVkmlreaGAkeVh~riAsPp 395 (474)
T KOG0572|consen 355 EGKRVVLVDDSIVRGTTSSPIVKMLREAGAKEVHIRIASPP 395 (474)
T ss_pred CCceEEEEecceeccCchHHHHHHHHHcCCcEEEEEecCCc
Confidence 57889999999999999999999999998778999887654
No 74
>PF03522 KCl_Cotrans_1: K-Cl Co-transporter type 1 (KCC1); InterPro: IPR018491 The K-Cl co-transporter (KCC) mediates the coupled movement of K+ and Cl- ions across the plasma membrane of many animal cells. This transport is involved in the regulatory volume decrease in response to cell swelling in red blood cells, and has been proposed to play a role in the vectorial movement of Cl- across kidney epithelia. The transport process involves one for one electroneutral movement of K+ together with Cl-, and, in all known mammalian cells, the net movement is outward []. In neurones, it appears to play a unique role in maintaining low intracellular Cl-concentration, which is required for the functioning of Cl- dependent fast synaptic inhibition, mediated by certain neurotransmitters, such as gamma-aminobutyric acid (GABA) and glycine. Three isoforms of the K-Cl co-transporter have been described, termed KCC1 KCC2, and KCC3, containing 1085, 1116 and 1150 amino acids, respectively. They are predicted to have 12 transmembrane (TM) regions in a central hydrophobic domain, together with hydrophilic N- and C-termini that are likely cytoplasmic. Comparison of their sequences with those of other ion-tranporting membrane proteins reveals that they are part of a new superfamily of cation-chloride co-transporters, which includes the Na-Cl and Na-K-2Cl co-transporters. KCC1 and KCC3 are widely expressed in human tissues, while KCC2 is are expressed only in brain neurones, making it likely that this is the isoform responsible for maintaining low Cl- concentration in neurones [, , ]. KCC1 is widely expressed in human tissues, and when heterologously expressed, possesses the functional characteristics of the well-studied red blood cell K-Cl co-transporter, including stimulation by both swelling and N-ethylmaleimide. Several splice variants have also been identified. KCC3 is widely expressed in human tissues and, like KCC1, is stimulated by both swelling and N-ethylmaleimide. The induction of KCC3 is up-regulated by vascular endothelial growth factor and down-regulated by tumour necrosis factor. Defects in KCC3 are linked to agenesis of the corpus callosum with peripheral neuropathy []. This disorder is characterised by severe progressive sensorimotor neuropathy, mental retardation, dysmorphic features and complete or partial agenesis of the corpus callosum.; GO: 0005215 transporter activity, 0006811 ion transport, 0016020 membrane
Probab=22.33 E-value=41 Score=18.06 Aligned_cols=13 Identities=38% Similarity=0.685 Sum_probs=8.1
Q ss_pred ccccCCccccccc
Q psy3208 118 GEYYNDTEEQEDT 130 (144)
Q Consensus 118 ~~~~~~~~~~~~~ 130 (144)
+-+|.|+||..++
T Consensus 11 ~SlySDeeeE~~~ 23 (30)
T PF03522_consen 11 ESLYSDEEEETET 23 (30)
T ss_pred eccccCccccccc
Confidence 3467777766554
No 75
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=21.96 E-value=2.1e+02 Score=24.98 Aligned_cols=41 Identities=20% Similarity=0.379 Sum_probs=35.4
Q ss_pred CCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208 27 PGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67 (144)
Q Consensus 27 ~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~ 67 (144)
.|-+|+-|+++-+.+.|-..++++|++.+-..|.+.|..+.
T Consensus 347 ~gk~VlLVDDvittGtTl~~~~~~Lk~aGA~eV~v~i~sPp 387 (471)
T PRK06781 347 EGKRVVMIDDSIVRGTTSKRIVRMLREAGATEVHVRIASPP 387 (471)
T ss_pred CCceEEEEeceeccchHHHHHHHHHHHcCCcEEEEEECCCC
Confidence 46789999999999999999999999987678888886653
No 76
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=21.33 E-value=1.6e+02 Score=25.74 Aligned_cols=41 Identities=15% Similarity=0.321 Sum_probs=35.4
Q ss_pred CCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEcCC
Q psy3208 27 PGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67 (144)
Q Consensus 27 ~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r~~ 67 (144)
.|..|+-|+++-+.+.|-..++++|++.+-..|.+.+..+.
T Consensus 355 ~gk~VlLVDDsittGtTl~~~~~~L~~aGak~V~~ri~sPp 395 (474)
T PRK06388 355 SGKRIVLVDDSIVRGNTMRFIVKIMRKYGAKEVHVRIGSPH 395 (474)
T ss_pred cCceEEEEeCeECcHHHHHHHHHHHHHcCCCEEEEEeCCCC
Confidence 57889999999999999999999999987678888886643
No 77
>KOG4407|consensus
Probab=20.40 E-value=43 Score=33.27 Aligned_cols=55 Identities=5% Similarity=-0.047 Sum_probs=42.7
Q ss_pred EEEEEEcCCChhhhcCCcCCCCEEEeeCCEeCCCCCHHHHHHHHHcCCCCeEEEEEEc
Q psy3208 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65 (144)
Q Consensus 8 i~Is~V~~gg~A~~~GrL~~GD~Il~VNg~~l~~~t~~e~v~ll~~~~~~~V~L~V~r 65 (144)
+++..+..++++..+| +..+|.|..|+|....+.+ .....+++... ..+.+.|.-
T Consensus 98 ~~~~Q~~s~~~~~nsG-~~s~~~v~~itG~e~~~~T-S~~~~~vk~~e-T~~~~eV~~ 152 (1973)
T KOG4407|consen 98 TNWPQEASSAAGSNSG-SSSSVGVAGITGLEPTSPT-SLPPYQVKAME-TIFIKEVQA 152 (1973)
T ss_pred cccchhcccCcccccC-cccccceeeecccccCCCc-cccHHHHhhhh-hhhhhhhcc
Confidence 6788889999999999 9999999999999998877 45556666653 444555543
Done!