RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3208
(144 letters)
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 77.4 bits (191), Expect = 1e-19
Identities = 34/65 (52%), Positives = 45/65 (69%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
+P +VIVIRSLV GVA+ L+PGDRL+SVNE L+N SL +AV+ LK P G+V +
Sbjct: 40 DPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAVPPGLVHL 99
Query: 62 GVAKP 66
G+
Sbjct: 100 GICSG 104
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 76.0 bits (187), Expect = 8e-19
Identities = 13/72 (18%), Positives = 29/72 (40%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
+ + I + G ++ + PGD +L + T + + +A +K P G V I +
Sbjct: 55 GDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTIVI 114
Query: 64 AKPLPIPDSSCS 75
+ + +
Sbjct: 115 RRKSLQSKETTA 126
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 73.9 bits (182), Expect = 2e-18
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + ++ GG A D +L GD+LL+VN L + ++AV ALK V +
Sbjct: 30 PGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNTS-DFVYLK 88
Query: 63 VAKPLPIPDSSCSQVSH 79
VAKP + S H
Sbjct: 89 VAKPTSMYISRHHHHHH 105
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 73.6 bits (181), Expect = 3e-18
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
PNE I L+ G ++D++L GD + N L KGA G V +
Sbjct: 22 PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN-GKVSME 80
Query: 63 VAKPLPIPDSSCSQVSH 79
V +P P S S V
Sbjct: 81 VTRPKPGSGGSGSLVPR 97
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 73.3 bits (180), Expect = 7e-18
Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIG 62
+ + I+SLV G A LD ++ GD ++SVN+T + + Q V+ + P G V +
Sbjct: 41 PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLE 100
Query: 63 VAKPLPIPDSSCS 75
+ + P+P
Sbjct: 101 LCRGYPLPFDPDD 113
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 72.8 bits (179), Expect = 9e-18
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I + ++ GG AQ D RL GDRLL VN L + ++AV LK +V +
Sbjct: 51 PGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTS-EVVYLK 109
Query: 63 VAKPLPI 69
V KP I
Sbjct: 110 VGKPTTI 116
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 70.4 bits (173), Expect = 3e-17
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIG 62
+ + I+SLV G A LD ++ GD ++SVN+T + + Q V+ + P G V +
Sbjct: 23 PDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLE 82
Query: 63 VAK 65
+ +
Sbjct: 83 LCR 85
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 70.9 bits (174), Expect = 5e-17
Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIGVAKP 66
+ ++S++P G A D ++ GD ++ +NE + + V+ + P G V + + +
Sbjct: 46 LQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLVLCRG 105
Query: 67 LPIPDSSCSQVSHA 80
P+P +
Sbjct: 106 YPLPFDPEDPANSG 119
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 68.5 bits (168), Expect = 2e-16
Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
PNE I L+ G ++D++L GD + N L + KGA G V +
Sbjct: 28 PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGAN-GKVSME 86
Query: 63 VAKPLPIPDS 72
V +P P S
Sbjct: 87 VTRPKPAAAS 96
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 66.9 bits (164), Expect = 8e-16
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + I I ++ GG AQ D RL GDRLL+VN T+L + ++AV +LK +V +
Sbjct: 30 PGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTS-DMVYLK 88
Query: 63 VAKP 66
VAKP
Sbjct: 89 VAKP 92
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 67.8 bits (166), Expect = 8e-16
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I ++++ GG A D R+ D L+ V+ T L + A L+ G V+ + +
Sbjct: 37 IFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK-GRVRFMIGRER 95
Query: 68 PIPDSSCSQVSH 79
P S +Q+
Sbjct: 96 PGEQSEVAQLIQ 107
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 68.0 bits (166), Expect = 9e-16
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIG 62
N + I L+ G A D L PGD L+SV ++ +L + ++ L+ G +++I
Sbjct: 47 NGPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIK 106
Query: 63 VAKPL-PIPDSSCSQVSHAG 81
+ IP +G
Sbjct: 107 AYRGFLEIPQEWQDSGPSSG 126
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction,
structural genom structural genomics consortium, SGC,
signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A
3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A
Length = 102
Score = 66.2 bits (162), Expect = 2e-15
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P++ I I ++PGG A +D RL D +L VNE D++ +AV+ALK A +V++
Sbjct: 31 PDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEAG-PVVRLV 89
Query: 63 VAKPLPIPDSS 73
V + P P+ +
Sbjct: 90 VRRRQPPPEET 100
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics,
alternative splicing, cell cycle, cell division, cell
junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A
Length = 111
Score = 65.8 bits (161), Expect = 4e-15
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKI 61
I +++++P G A D RL GDRL+ VN DL S ++ V L+ G V +
Sbjct: 36 GGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKMEGTVSL 95
Query: 62 GVAKPLPIPDS 72
V +
Sbjct: 96 LVFRQEEAFHP 106
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 65.4 bits (160), Expect = 4e-15
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR-GIVKIGVAKP 66
I+I +++ G A D RL PGD L+ V+ + + + + A R G V + V +
Sbjct: 36 ILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQVNLTVRRK 95
Query: 67 LPIPDSS 73
+ SS
Sbjct: 96 VLSGPSS 102
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 65.0 bits (159), Expect = 5e-15
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
N+T + + +V GG+A D RL+ GD++L VN D+ NA+ + LK + G V + V
Sbjct: 27 NDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSL-GTVTLEV 85
Query: 64 AKP 66
+
Sbjct: 86 GRI 88
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 65.0 bits (159), Expect = 6e-15
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
+T + +R L+ G AQ RL GD +L +N + QAV+ ++ + +
Sbjct: 34 VAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGG-PQLHL 92
Query: 62 GVAKPLPIPDS 72
+ +PL P S
Sbjct: 93 VIRRPLSGPSS 103
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 65.1 bits (159), Expect = 7e-15
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
T I ++SL+PG A LD R+ P D++L V++ ++ + V+ L+ A V++
Sbjct: 41 GEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLRNAG-NPVRLL 99
Query: 63 VAKPLPIPD 71
+ + LP+ +
Sbjct: 100 LIRRLPLLE 108
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 64.7 bits (158), Expect = 1e-14
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I ++S+V GG A +D RL GD+LLSV+ L S ++A + + +V + VAK
Sbjct: 40 IYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTS-SVVTLEVAKQG 98
Query: 68 PI 69
I
Sbjct: 99 AI 100
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 64.7 bits (158), Expect = 1e-14
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKP 66
I +++++P G A D RL GDRL+ VN DL S ++ V L+ G V + V +
Sbjct: 60 IYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLLVFRQ 119
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A
Length = 108
Score = 64.0 bits (156), Expect = 2e-14
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA--PRGIV 59
+ I I S++ GG D R+ PGD LL VN+ + N S D AV+ L+ G +
Sbjct: 29 ERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPI 88
Query: 60 KIGVAKPLPIPDSSCSQVSHAGP 82
+ VAK S ++V GP
Sbjct: 89 VLTVAKS---GGGSGNEVWIDGP 108
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 66.5 bits (162), Expect = 2e-14
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
PNE I L+ G ++D++L GD + N L KGA G V +
Sbjct: 133 PNEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN-GKVSME 191
Query: 63 VAKPLPIPDSS 73
V +P P +
Sbjct: 192 VTRPKPTLRTE 202
Score = 52.6 bits (126), Expect = 2e-09
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASL--DQAVQALKGAPRGIV 59
N T VI + P G D RL D + +N T ++ S+ + Q V
Sbjct: 41 NHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKAV 100
Query: 60 KIGVAKPLPIPDSSCSQVSH--AGPGLGANGLGAAPGL 95
+ V + P + AG LG + G
Sbjct: 101 TLTVFRADPPELEKFNVDLMKKAGKELGLSLSPNEIGC 138
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 63.4 bits (155), Expect = 2e-14
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP-RGIVKIGVAKP 66
I I +VP G A D RL GD L+SV+ T + S VQ ++ A +G V + V +
Sbjct: 29 IYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGHVNLTVRQT 88
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 62.8 bits (153), Expect = 6e-14
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
+ +V+R++VPGG+A D RL GD +L + T++ + +Q Q L+ V++ V
Sbjct: 36 KTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCG-NSVRMLV 94
Query: 64 AKPLPIPDSSCSQVS 78
A+ S S S
Sbjct: 95 ARDPAGDISVTSGPS 109
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 61.5 bits (150), Expect = 1e-13
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
+E + I L+ GG+A D RL DR+L++N DL + + A Q ++ A V + +
Sbjct: 27 DEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQ-ASGERVNLTI 85
Query: 64 AKP 66
A+P
Sbjct: 86 ARP 88
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 61.6 bits (150), Expect = 1e-13
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
N T I I+ +VP A L RL GDR+LS+N D+ N++ + +K A +++
Sbjct: 33 NTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEAD-FKIEL 91
Query: 62 GVAKP 66
+
Sbjct: 92 EIQTF 96
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 62.0 bits (151), Expect = 1e-13
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I I + P GVA +L GDR++++ T + QAV LK A G +++ V
Sbjct: 55 IFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA-SGSIEMQVVAGG 113
Query: 68 PIPDSS 73
+ ++S
Sbjct: 114 DVSETS 119
>3e17_A Tight junction protein ZO-2; domain swapping, alternative
promoter usage, alternative splicing, cell junction,
cell membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 61.2 bits (149), Expect = 2e-13
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I ++ + G+A D L GD +L +N T N SL A + ++ + RG +++ V + L
Sbjct: 23 IFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKS-RGKLQLVVLRDL 81
Query: 68 P 68
Sbjct: 82 E 82
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 61.2 bits (149), Expect = 2e-13
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
+ I + + GG A L GDR+LS+N D+ A D AV L A + +
Sbjct: 35 AGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTAAS-PTIALL 93
Query: 63 VAKPLPIPDSS 73
+ + SS
Sbjct: 94 LEREAGSGPSS 104
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 60.7 bits (148), Expect = 2e-13
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
+VI S+ PGG A + + PGDRLLSV+ L + +A+ LK + + +
Sbjct: 34 VVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG-QEAALLIEYDV 92
Query: 68 P 68
Sbjct: 93 S 93
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 60.8 bits (148), Expect = 3e-13
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I+I + G A D RL GD++L VN DL A+ D+A+ L+ P V++ + +
Sbjct: 32 IIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTP-QRVRLTLYRDE 90
Query: 68 PIPDSS 73
S+
Sbjct: 91 APYKST 96
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 60.9 bits (148), Expect = 3e-13
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I + + G A LD RL GD++LSVN DL N AV + A V + V L
Sbjct: 49 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQHRL 107
Query: 68 PIPDSSCSQVS 78
+ + S S
Sbjct: 108 QVQNGPISGPS 118
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 62.8 bits (153), Expect = 3e-13
Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
++ I I ++PGG A D RL D +L VNE D+ + AV+ALK A IV++
Sbjct: 32 GDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA-GSIVRLY 90
Query: 63 VAKPLPIPDSSCSQVSHAGP-GLG---ANGLGAAPGLGSNGL 100
V + P + GP GLG A G+G G N +
Sbjct: 91 VMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSI 132
Score = 61.7 bits (150), Expect = 8e-13
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
P + I + ++ GG A D RL GD++L+VN L + + AV ALK +V
Sbjct: 125 HIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTY-DVVY 183
Query: 61 IGVAKP 66
+ VAKP
Sbjct: 184 LKVAKP 189
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 60.4 bits (147), Expect = 4e-13
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I ++++ GG AQ D R+ D+++ V+ L + + A L+ G V+ + +
Sbjct: 42 IFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNTK-GNVRFVIGREK 100
Query: 68 PIPDSS 73
P SS
Sbjct: 101 PSGPSS 106
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 59.9 bits (146), Expect = 5e-13
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I +++++P G A+ D R+ GDR+L+VN L A+ QAV+ L+ +V + + K
Sbjct: 35 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG-QVVHLLLEKGQ 93
Query: 68 P 68
Sbjct: 94 S 94
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1,
HOST-virus interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 60.0 bits (146), Expect = 5e-13
Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I ++S+ + D R+ GD++++V+ T+L + QAV+ L+ V + + +
Sbjct: 35 IFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTG-QTVLLTLMRRG 93
Query: 68 P 68
Sbjct: 94 E 94
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 60.0 bits (146), Expect = 6e-13
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I + + G A LD RL GD++LSVN DL N AV + A V + V L
Sbjct: 39 IYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNAG-YAVSLRVQHRL 97
Query: 68 P 68
Sbjct: 98 E 98
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 59.6 bits (145), Expect = 6e-13
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I+I SL GG+A+ + GDR+L++N + L L +A+ L+ A V + + K
Sbjct: 32 IIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAG-ETVTLKIKKQT 90
Query: 68 PIPDSS 73
+S
Sbjct: 91 DAQPAS 96
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1qav_B
Length = 112
Score = 59.8 bits (145), Expect = 7e-13
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
++ ++I L+ GG A+ + GD +L+VN+ L + S D A++ L+G
Sbjct: 24 SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETH 79
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 61.7 bits (150), Expect = 1e-12
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
+VI + PGG A + + PGDRLLSV+ L + +A+ LK + + +
Sbjct: 137 VVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG-QEATLLIEYDV 195
Query: 68 PIPDS 72
+ DS
Sbjct: 196 SVMDS 200
Score = 61.3 bits (149), Expect = 1e-12
Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
+ + +L GG+A +L GD + +VN +L D+ + LK V + V
Sbjct: 31 KDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNV-GERVVLEV 89
Query: 64 AKPLPIPDSSCSQVSHAGPGL----GANGLG 90
LP S V + N G
Sbjct: 90 EYELPPVSIQGSSVMFRTVEVTLHKEGNTFG 120
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 59.3 bits (144), Expect = 1e-12
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I I+ ++ A + L PGDR++ V+ DL +AS +QAV+A++ A V V +
Sbjct: 41 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQSII 99
Query: 68 PIP 70
Sbjct: 100 STR 102
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 59.8 bits (145), Expect = 1e-12
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG---IVKIGVA 64
+V+ ++ GG A+ ++ GD ++++N + + +L +A AL+ A + + VA
Sbjct: 45 VVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVA 104
Query: 65 KPLP 68
P
Sbjct: 105 VCPP 108
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB:
2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 58.9 bits (143), Expect = 2e-12
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
ET IVI ++ GG A + +L DR+ VN ++N AVQ L+ + KI
Sbjct: 35 QSGETSIVISDVLKGGPA--EGQLQENDRVAMVNGVSMDNVEHAFAVQQLRKSG-KNAKI 91
Query: 62 GVAKPLPIPDSSCSQV 77
+ + + +
Sbjct: 92 TIRRKKGGGWRRTTYL 107
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 60.9 bits (148), Expect = 2e-12
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
+VI + G VA L GD+LL+++ L++ S++ AVQ L+ +VK+
Sbjct: 131 RKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC-EDLVKL 189
Query: 62 GVAKP 66
+ K
Sbjct: 190 KIRKD 194
Score = 59.4 bits (144), Expect = 6e-12
Identities = 15/101 (14%), Positives = 35/101 (34%), Gaps = 9/101 (8%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
+I + A+ L GDR++++N +++ ++A Q L+ + K+ +
Sbjct: 38 PLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS-ITSKVTLEIEF 96
Query: 68 PIPDSSCSQ--------VSHAGPGLGANGLGAAPGLGSNGL 100
+ +S LG + + L
Sbjct: 97 DVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPL 137
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 62.6 bits (151), Expect = 2e-12
Identities = 25/87 (28%), Positives = 39/87 (44%)
Query: 1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
++ I I ++PGG A D RL D +L VNE D+ + AV+ALK A +
Sbjct: 84 HIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAGSIVRL 143
Query: 61 IGVAKPLPIPDSSCSQVSHAGPGLGAN 87
+ + P ++ GLG +
Sbjct: 144 YVMRRKPPAEKVMEIKLIKGPKGLGFS 170
Score = 54.1 bits (129), Expect = 2e-09
Identities = 30/91 (32%), Positives = 40/91 (43%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I I ++ GG A L L GD++LSVN DL NAS +QA ALK A + + I KP
Sbjct: 333 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYKPE 392
Query: 68 PIPDSSCSQVSHAGPGLGANGLGAAPGLGSN 98
+ ++ L SN
Sbjct: 393 EYSRFEAKIHDLREQLMNSSLGSGTASLRSN 423
Score = 47.6 bits (112), Expect = 3e-07
Identities = 19/58 (32%), Positives = 29/58 (50%)
Query: 1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI 58
P + I + ++ GG A D RL GD++L+VN L + + AV ALK +
Sbjct: 179 HIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVV 236
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 58.9 bits (143), Expect = 2e-12
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I +++++P G A+ D R+ GDR+L+VN L A+ QAV+ L+ +V + + K
Sbjct: 44 IYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG-QVVHLLLEKGQ 102
Query: 68 P 68
Sbjct: 103 S 103
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 58.9 bits (143), Expect = 2e-12
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I I + P G A D RL G RLL VN+ L + +AVQ L+ + + V
Sbjct: 46 IFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSVG-DTLTVLVCDGF 104
Query: 68 PIPDSS 73
SS
Sbjct: 105 ESGPSS 110
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 58.6 bits (142), Expect = 2e-12
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I + +V G A + L DR++ VN DL+ A+ DQAV+A K A + + + V +
Sbjct: 43 IFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFKTA-KEPIVVQVLRRT 101
Query: 68 PIPDS 72
P S
Sbjct: 102 SGPSS 106
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 59.4 bits (144), Expect = 2e-12
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLN-NASLDQAVQALKGAPRGIVKIGVAKP 66
I ++ + PG VA D RL D++L++N T L+ N S QA+ L+ G +++ VA+
Sbjct: 56 IFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQTT-GSLRLIVARE 114
Query: 67 LPIPDSSCSQVS 78
SS S S
Sbjct: 115 PVHTKSSTSGPS 126
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 58.9 bits (143), Expect = 2e-12
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
IVI + G A D RL GD++L VN DL N+S ++A+ AL+ P V++ V +
Sbjct: 45 IVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTP-QKVRLVVYRDE 103
Query: 68 PIPDSSCSQVS 78
S S
Sbjct: 104 AHYRDEESGPS 114
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 59.0 bits (143), Expect = 2e-12
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I + + P G A D R+ GD LL +N L S A +K AP VK+ +
Sbjct: 53 IFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAP-SKVKLVFIRNE 111
Query: 68 PIPDSSCSQVS 78
+ S S
Sbjct: 112 DAVNQMASGPS 122
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 58.5 bits (142), Expect = 2e-12
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
+ I++L+PG A D RL GDR+L VN + L +AV ++ ++ VAK
Sbjct: 38 LYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG-KKMRFLVAKSD 96
Query: 68 PIPDSSCSQVSHAG 81
+G
Sbjct: 97 VETAKKIHSGPSSG 110
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 58.0 bits (141), Expect = 3e-12
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
I I ++PGGVA L GD+LLSVN + ++AV+ LK A +G VK+ V
Sbjct: 32 IYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA-QGSVKLVVRS 88
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 58.2 bits (141), Expect = 3e-12
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA---PRGI 58
++ I ++PGG D RL PGD+L+S+N+ + S ++A + A
Sbjct: 37 RNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESP 96
Query: 59 VKIGVAKPLP 68
+I + P
Sbjct: 97 WEIAFIRSGP 106
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 57.3 bits (139), Expect = 3e-12
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
I ++ + +A D + GD +L +N T N SL A ++ + +G +K+ V +
Sbjct: 23 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS-KGKLKMVVQRD 80
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 58.2 bits (141), Expect = 4e-12
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
+ E I ++PGG A+ +L+ G ++L N L + + ++ + G +I
Sbjct: 45 HSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQ-SGEAEI 103
Query: 62 GVAKPLPIPDSS 73
V L + S
Sbjct: 104 CVRLDLNMSGPS 115
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 58.1 bits (141), Expect = 4e-12
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
+ + L G A+ ++ GD +L +N N +A++ +K V++ + +
Sbjct: 51 LYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGG-RRVRLFLKRG 108
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 57.7 bits (140), Expect = 4e-12
Identities = 12/66 (18%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
+ + L G A + R+ GD+++ +N + + +A++ +K V++ + +
Sbjct: 38 LYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGG-RRVRLLLKRGT 96
Query: 68 PIPDSS 73
SS
Sbjct: 97 GSGPSS 102
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 57.7 bits (140), Expect = 4e-12
Identities = 24/51 (47%), Positives = 31/51 (60%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI 58
I I ++ GG A L L GD++LSVN DL NAS +QA ALK A + +
Sbjct: 37 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV 87
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 57.4 bits (139), Expect = 4e-12
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
I ++ + +A D + GD +L +N T N SL A ++ + +G +K+ V +
Sbjct: 25 IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERS-KGKLKMVVQRD 82
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS,
nitric oxide synthase, oxidoreductase; NMR {Rattus
norvegicus} SCOP: b.36.1.1
Length = 127
Score = 58.3 bits (141), Expect = 5e-12
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
++ ++I L+ GG A+ + GD +L+VN+ L + S D A++ L+G + +
Sbjct: 31 SKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLI 90
Query: 64 AKPLP 68
+
Sbjct: 91 LRGPE 95
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 57.8 bits (140), Expect = 5e-12
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
+ I + A LD + GD + VN + + + + ++ +G V I K
Sbjct: 52 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV-KGEVTIHYNKLQ 110
Query: 68 P 68
Sbjct: 111 Y 111
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 58.3 bits (141), Expect = 5e-12
Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA-PRGIVKIGVAKP 66
I + G +A L PGD +L N L A+ ++ + + P V++ V++
Sbjct: 67 AFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSRS 126
Query: 67 LPIP 70
P
Sbjct: 127 GPSS 130
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 57.8 bits (140), Expect = 5e-12
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I + S+ PGGV D R+ GD LL+V+ +L S +AV LK + + +
Sbjct: 55 IYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT-SSSIVLKALEVK 113
Query: 68 P 68
Sbjct: 114 E 114
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 57.8 bits (140), Expect = 6e-12
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI---VKIGVA 64
I + + P G+A + + G+ +LS+N L + A+ L+ A +
Sbjct: 44 ITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPRQAVIVTRKL 103
Query: 65 KPLPIPDSSCSQVS 78
P +PD + S S
Sbjct: 104 TPEAMPDLNSSGPS 117
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 57.8 bits (140), Expect = 6e-12
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 1/75 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
+ I + A LD + GD + VN + + + + ++ +G V I K
Sbjct: 47 LYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV-KGEVTIHYNKLQ 105
Query: 68 PIPDSSCSQVSHAGP 82
P + G
Sbjct: 106 ADPKQLEVLFNGPGI 120
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 60.8 bits (146), Expect = 6e-12
Identities = 16/84 (19%), Positives = 30/84 (35%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
+++ +++ GG A +L GD+++S+N T L L +KG
Sbjct: 228 GSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVK 287
Query: 62 GVAKPLPIPDSSCSQVSHAGPGLG 85
P + + LG
Sbjct: 288 LNIVSCPPVTTVLIKRPDLKYQLG 311
Score = 47.3 bits (111), Expect = 3e-07
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI 58
+I SL+ GG+A+ + G R++ +N + + ++ VQAL + I
Sbjct: 317 GIICSLMRGGIAE-RGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEI 366
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 57.7 bits (140), Expect = 7e-12
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
I ++++ G A D RL GD++++VN L + ++AV LK +G V + V
Sbjct: 55 IYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT-KGTVTLMVLSS 112
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 56.6 bits (137), Expect = 8e-12
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P++ I + + P G A L PGD+++ N N QAV LK V++
Sbjct: 32 PDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELI 88
Query: 63 VAKPLP 68
+ + +
Sbjct: 89 IVREVS 94
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 57.4 bits (139), Expect = 9e-12
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDL-NNASLDQAVQALKGAPRGIVKIGVAKP 66
I ++ + G VA D RL D++L++N L + QA+ L+ A + V++ +A+
Sbjct: 51 IFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKA-KDTVQLVIARG 109
Query: 67 LPIPDSS 73
+P
Sbjct: 110 -SLPQYY 115
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 57.4 bits (139), Expect = 9e-12
Identities = 12/76 (15%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
+ I ++S++PG A + + D++++V+ ++ + V+ L+ A +V
Sbjct: 41 HTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNA-GQVVH 99
Query: 61 IGVAKPLPIPDSSCSQ 76
+ + + +S +
Sbjct: 100 LTLVRRKTSSSTSPLE 115
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 57.5 bits (139), Expect = 1e-11
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I I+ ++ A + L PGDR++ V+ DL +AS +QAV+A++ A V V +
Sbjct: 61 IFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAG-NPVVFMVQSII 119
Query: 68 P 68
Sbjct: 120 S 120
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 56.5 bits (137), Expect = 1e-11
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
I+I + G A L GD +LSVN DL++A+ D+AVQALK + +V
Sbjct: 32 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV 83
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 56.7 bits (137), Expect = 1e-11
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I ++ G A A+L GDR+L+VN + N V+ +K A V + +
Sbjct: 45 HKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDAG-LSVTLRIIPQE 103
Query: 68 PIPDSSCS 75
+ S
Sbjct: 104 ELNSPSGP 111
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 56.8 bits (137), Expect = 1e-11
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
I I LVPGG+AQ L D +L VN +++ SLDQ + R ++
Sbjct: 67 IFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMIANSRNLI 118
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 56.7 bits (137), Expect = 2e-11
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
N++VI I + P V L PGD +LS++ T + + SL +A + L V++ +
Sbjct: 40 NKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASI-SEKVRLEI 98
Query: 64 AKPLPIPDSSCSQVSHAGPGLG 85
LP+P S +GP G
Sbjct: 99 ---LPVPQSQRPLRPSSGPSSG 117
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 55.9 bits (135), Expect = 2e-11
Identities = 17/75 (22%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA----PRG 57
N + + I ++ GG A +L G +L VN L +A + + A R
Sbjct: 28 NTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRD 87
Query: 58 IVKIGVAKPLPIPDS 72
+ V + P S
Sbjct: 88 YIDFLVTEFNSGPSS 102
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 55.9 bits (135), Expect = 2e-11
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
I+I + PG A L GD +L+VN +L + +AV L RG ++ V
Sbjct: 55 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ-RGEIEFEV 109
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing
isoform B; GOPC PDZ domain, structural protein; NMR
{Homo sapiens}
Length = 103
Score = 55.4 bits (134), Expect = 3e-11
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
I+I + PG A L GD +L+VN +L + +AV L RG ++ V
Sbjct: 37 ILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQ-RGEIEFEV 91
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling protein;
NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 55.5 bits (134), Expect = 3e-11
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P++ I + + P G A L PGD+++ N N QAV LK V++
Sbjct: 40 PDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQ-NTVELI 96
Query: 63 VAKPLP 68
+ + +
Sbjct: 97 IVREVS 102
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 55.5 bits (134), Expect = 3e-11
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI-VKIGVAKP 66
VI +L+ GG A+ L GDRL ++N T L L A++ V + +
Sbjct: 39 AVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQTSVTLSIVHC 98
Query: 67 LPI 69
P+
Sbjct: 99 PPV 101
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 57.3 bits (138), Expect = 3e-11
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAK 65
I ++++ GG A D R+ D L+ V+ T L + A L+ G V+ + +
Sbjct: 113 IFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRNTK-GRVRFMIGR 169
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 55.0 bits (133), Expect = 4e-11
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I + + PG +A+ + L GD++L VN+ L + +AV+ALKG+ + ++ + A +
Sbjct: 37 IYVSLVEPGSLAEKE-GLRVGDQILRVNDKSLARVTHAEAVKALKGSKKLVLSVYSAGRI 95
Query: 68 PIPDS 72
P S
Sbjct: 96 SGPSS 100
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 55.5 bits (134), Expect = 4e-11
Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI---VKIGVA 64
I I+ ++ A L GD++L V+ DL NAS +AV+A+K A + V+ +
Sbjct: 52 IFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFIVQSLSS 111
Query: 65 KPLPIP 70
P IP
Sbjct: 112 TPRVIP 117
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 55.5 bits (134), Expect = 5e-11
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
ET IVI ++PGG A D L DR++ VN T + + AVQ L+ + + I I
Sbjct: 42 ENGETSIVISDVLPGGPA--DGLLQENDRVVMVNGTPMEDVLHSFAVQQLRKSGK-IAAI 98
Query: 62 GVAKPLPIPDSSCS 75
V +P + + S
Sbjct: 99 VVKRPRKVQVAPLS 112
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex,
peptide binding protein; 1.54A {Rattus norvegicus}
SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 55.5 bits (134), Expect = 5e-11
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
I I ++ GG A L L GD++LSVN DL NAS +QA ALK A + +
Sbjct: 40 IFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT 91
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 96
Score = 54.7 bits (132), Expect = 5e-11
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
+ + ++ GG A +L PGD++L +N + S ++AV L+ A + I V +
Sbjct: 33 LTVVAVTAGGSA--HGKLFPGDQILQMNNEPAEDLSWERAVDILREAE-DSLSITVVRCT 89
Query: 68 PIPDSS 73
SS
Sbjct: 90 SSGPSS 95
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 55.6 bits (134), Expect = 5e-11
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA------PRGIVKI 61
I I+S++ GG A D RL D+L++VN L S +A++ L+ + RG++++
Sbjct: 57 IFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQL 116
Query: 62 GVAK 65
+ +
Sbjct: 117 VILR 120
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 53.7 bits (129), Expect = 2e-10
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
+ + L P A + A GD ++S+ D +L + ++ LK +++ V L
Sbjct: 46 VQVHFLDPYCSASV-AGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL 104
Query: 68 PIP 70
Sbjct: 105 DEV 107
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 53.9 bits (130), Expect = 2e-10
Identities = 22/52 (42%), Positives = 31/52 (59%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
I + ++ GG A L L GDR+LSVN +L NA+ +QA ALK A + +
Sbjct: 41 IFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVT 92
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 53.3 bits (128), Expect = 3e-10
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
+ ++ I I + P +A D R+ GDR++ +N ++ N +AV L +
Sbjct: 44 DEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE--EAVALLTSEENKNFSL 101
Query: 62 GVAKPLPIPD 71
+A+P D
Sbjct: 102 LIARPELQLD 111
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 52.3 bits (126), Expect = 3e-10
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
++ ++ GG+ L GD + +N + N +++Q + L+ I
Sbjct: 27 CIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSIT 78
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 53.2 bits (128), Expect = 3e-10
Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
++I +V GG A+ L GD +L +N ++ +++ L G + + P
Sbjct: 50 VIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM-HGTLTFVL-IPS 107
Query: 68 PIPDS 72
P S
Sbjct: 108 SGPSS 112
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 54.1 bits (130), Expect = 4e-10
Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
+ I ++ + A L L GD++L +N + S D+A + LK A + + +
Sbjct: 26 DNGIFVQLVQANSPASL-VGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTI 83
Score = 33.6 bits (77), Expect = 0.009
Identities = 9/56 (16%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 12 SLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
S+V A + L + +N ++ Q L +V I +
Sbjct: 113 SIVKDSSAARNGLL-TEHNICEINGQNVIGLKDSQIADILS-TSGTVVTITIMPAF 166
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 53.1 bits (127), Expect = 5e-10
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I + + GG A++ L GD+++ VN D+ + DQA + L +V++ V +
Sbjct: 66 IYVTRVSEGGPAEIA-GLQIGDKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRLLVTRQS 124
Query: 68 PIPDSSCSQVS 78
S +S
Sbjct: 125 LQKAVQQSMLS 135
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 52.3 bits (126), Expect = 5e-10
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I I + G A + GD+LL VN L A +AV+AL+GA V++ V +
Sbjct: 36 IFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVWRER 93
Query: 68 PIP 70
Sbjct: 94 ETS 96
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 52.9 bits (127), Expect = 5e-10
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
+I + A+ L GDR++++N +++ ++A Q L+ + K+ +
Sbjct: 47 PLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSSI-TSKVTLEIEF 105
Query: 68 PIPDSSCSQVSHAGPGLG 85
+ +S S +GP G
Sbjct: 106 DVAESV-IPSSGSGPSSG 122
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 53.0 bits (127), Expect = 1e-09
Identities = 12/71 (16%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
+ I L+ GG A L GD ++ +N +++ + ++ + ++ +K+ +
Sbjct: 112 LFISHLIKGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIRTEKTVSIKVRHIGLI 170
Query: 68 PIPDSSCSQVS 78
P+ S ++
Sbjct: 171 PVKSSPDEPLT 181
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 51.7 bits (124), Expect = 2e-09
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG 57
N+ I + ++ A + L GD++L VN D N ++AV L P+G
Sbjct: 49 NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKG 101
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 50.8 bits (122), Expect = 2e-09
Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA 64
I++ ++ GG A + GD L VN + + ++ +Q L + +G + +
Sbjct: 30 IIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQS-QGAITFKII 85
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A
{Homo sapiens}
Length = 95
Score = 50.5 bits (121), Expect = 2e-09
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI-VKIGVAKP 66
I+ + GGV + GD + S+N ++ + LK + + + +P
Sbjct: 30 AFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELFTMKLIEP 89
Query: 67 L 67
Sbjct: 90 K 90
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 50.4 bits (121), Expect = 2e-09
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
+ IR + PG A+ A L+ GDRL+ VN ++ + Q V ++ A V++ V
Sbjct: 25 GKLGQYIRLVEPGSPAE-KAGLLAGDRLVEVNGENVEKETHQQVVSRIRAAL-NAVRLLV 82
Query: 64 AKP 66
P
Sbjct: 83 VDP 85
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 50.4 bits (121), Expect = 2e-09
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
E + ++++ P G L L P DRLL VN + V + +
Sbjct: 30 LEKGVYVKNIRPAGPGDL-GGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESG 80
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 50.0 bits (120), Expect = 3e-09
Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVK 60
+P ++ +V + L GD ++ VN+ ++ + +Q V L +P+G V
Sbjct: 23 SPGGGGQRVKQIVD---SPRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVT 79
Query: 61 IGVAKPLPI 69
+ V + +
Sbjct: 80 LLVQRQTRL 88
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 52.4 bits (125), Expect = 4e-09
Identities = 24/68 (35%), Positives = 33/68 (48%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I+I + G A L GD +LSVN DL++A+ D+AVQALK + +V
Sbjct: 105 ILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEVKYMKE 164
Query: 68 PIPDSSCS 75
P S
Sbjct: 165 VSPYFKNS 172
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 49.3 bits (118), Expect = 4e-09
Identities = 10/50 (20%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG 57
I + S+ G A+ ++L D ++++N T + + +A+ A
Sbjct: 30 IFVASVEAGSPAEF-SQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQET 78
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 49.3 bits (118), Expect = 6e-09
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA 64
+ ++ GG+ L GD +L +N T++ N S+DQ +A+K +G++ + V
Sbjct: 38 CTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET-KGMISLKVI 93
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, protein binding;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 49.4 bits (118), Expect = 9e-09
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I I + PG A+ + L GD++L VN N D+AV+ LK + I+ + L
Sbjct: 48 IYITGVDPGSEAE-GSGLKVGDQILEVNGRSFLNILHDEAVRLLKSSRHLILTVKDVGRL 106
Query: 68 PIPDSSCSQVSH 79
P ++ +
Sbjct: 107 PHARTTVDETKW 118
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 48.9 bits (117), Expect = 1e-08
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I I + G A + GD+LL VN L A +AV+AL+GA V++ V +
Sbjct: 48 IFISRVSEEGPAARA-GVRVGDKLLEVNGVALQGAEHHEAVEALRGAG-TAVQMRVWRES 105
Query: 68 PIP 70
Sbjct: 106 GPS 108
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 48.1 bits (115), Expect = 2e-08
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I + + G A+ L GD++ VN L + ++ AV+ L + R + + V +
Sbjct: 38 IFVSKVEEGSSAERA-GLCVGDKITEVNGLSLESTTMGSAVKVLTSSSR--LHMMVRRMG 94
Query: 68 PIPDS 72
P S
Sbjct: 95 SGPSS 99
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 48.1 bits (115), Expect = 2e-08
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
I I ++P A L GD++L+VN+ D + +AV+ LK A +++
Sbjct: 43 IFISKVIPDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILKTAREISMRV 95
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens}
PDB: 3nfl_A 2vph_A
Length = 107
Score = 48.3 bits (115), Expect = 2e-08
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 8 IVIRSLVPGGVA-QLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56
+++ + PG A RL GD+++ +N D+ + DQ V +K +
Sbjct: 45 VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCE 94
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium
channel 3 chimera; PDZ domain, PDZ binding, GIRK3
regulation, early endosomes; 1.68A {Rattus norvegicus}
PDB: 3qdo_A 3qgl_A
Length = 107
Score = 48.1 bits (115), Expect = 2e-08
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
+ + +++PGG A A + GDR+L VN ++ A+ Q V ++ + ++
Sbjct: 41 YAPLQHVSAVLPGGAADR-AGVRKGDRILEVNGVNVEGATHKQVVDLIRAGEKELI 95
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 48.3 bits (115), Expect = 2e-08
Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
+ + L P A L A GD ++S+ D ++ + ++ LK V++ V L
Sbjct: 38 VQVHFLDPHCSASL-AGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVVSLL 96
Query: 68 PIPDSSCSQVSHAG 81
S ++ +
Sbjct: 97 DSTSSMHNKSGPSS 110
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 47.7 bits (114), Expect = 2e-08
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI---VKIGVA 64
+ ++++ GG A+ A L D +L +NE + + + ++ P I V V
Sbjct: 26 VRVQAVDSGGPAER-AGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRMVP 84
Query: 65 KPLPIPD 71
+ P PD
Sbjct: 85 QVKPGPD 91
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 47.9 bits (114), Expect = 3e-08
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKI 61
I I + PG ++ + L GD+++ VN D +N +AV LK + + I
Sbjct: 43 IFISHVKPGSLSA-EVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRSLTISI 95
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 47.3 bits (113), Expect = 4e-08
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
I+ + GG A L A L D ++ VN ++ + ++ V ++ + V + V
Sbjct: 29 SFIKEVQKGGPADL-AGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSG-KNVTLLVCGK 85
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 46.8 bits (112), Expect = 4e-08
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
V+ ++ G A L GD++L+VNE ++ AS + V+ + G++ + +A+ +
Sbjct: 25 CVLSCVMRGSPADF-VGLRAGDQILAVNEINVKKASHEDVVKLIGKCS-GVLHMVIAEGV 82
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 117
Score = 47.5 bits (113), Expect = 5e-08
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I + + G +A L GD+LL N +L +A+ QA + + I +A+
Sbjct: 44 IYVSKVTVGSIAHQA-GLEYGDQLLEFNGINLRSATEQQARLIIGQQ-CDTITI-LAQYN 100
Query: 68 PIPDSSCSQVSHAGPGLG 85
P S S +GP G
Sbjct: 101 PHVHQLSSH-SRSGPSSG 117
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 47.1 bits (112), Expect = 6e-08
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 19 AQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG-IVKIGVAKPLPIPDSSCSQV 77
+Q L GD + + ++ N + Q V+ LK P G V + + + P + +++
Sbjct: 44 SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPLLILRGGPPSPTKTAKM 103
Query: 78 SHAGPGL 84
+
Sbjct: 104 GSGSGQI 110
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 46.5 bits (111), Expect = 7e-08
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
IRS+ PG A + L DRL+ VN ++ + V ++K ++ V P
Sbjct: 30 QYIRSVDPGSPAAR-SGLRAQDRLIEVNGQNVEGLRHAEVVASIKARE-DEARLLVVGP 86
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 45.8 bits (109), Expect = 1e-07
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
+ + + GG A L ++ GD L+++N T L S +A+ +KG+ R I+K+ V +
Sbjct: 37 LTVSKIEDGGKAALSQKMRTGDELVNINGTPLYG-SRQEALILIKGSFR-ILKLIVRRRN 94
Query: 68 PIPDS 72
P S
Sbjct: 95 SGPSS 99
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM,
tight junction, cell adhesio; 2.50A {Homo sapiens} PDB:
3tsw_A 3lh5_A
Length = 391
Score = 48.3 bits (114), Expect = 1e-07
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
N+ I + ++ A + L GD++L VN D N ++AV L P+G
Sbjct: 29 NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEE 83
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 45.3 bits (108), Expect = 2e-07
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56
+ I SL GG A A + GD +LS++ + + +A +KG
Sbjct: 29 LTISSLKDGGKAA-QANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTG 76
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 45.4 bits (108), Expect = 2e-07
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
+ + PG A+ A + GDRL++V + ++ V ++G V + V P
Sbjct: 32 QFLWEVDPGLPAKK-AGMQAGDRLVAVAGESVEGLGHEETVSRIQGQG-SCVSLTVVDP 88
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 45.0 bits (107), Expect = 2e-07
Identities = 12/59 (20%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
I++ + G A+ DA L PGD ++++N +A ++ +P +++ + +
Sbjct: 28 IMVTKVAERGKAK-DADLRPGDIIVAINGESAEGMLHAEAQSKIRQSP-SPLRLQLDRI 84
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 45.6 bits (108), Expect = 2e-07
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 8 IVIRSLVPGGVA-QLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56
+++ + PG A RL GD+++ +N D+ + DQ V +K +
Sbjct: 43 VIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCE 92
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 45.0 bits (107), Expect = 2e-07
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
IRS+ P A+ + L DR++ VN + V A++ K+ V
Sbjct: 35 QFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDRE 92
Query: 68 P 68
Sbjct: 93 T 93
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 44.5 bits (106), Expect = 3e-07
Identities = 10/52 (19%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
+ I + PG A ++L GD +++++ + + + +A +K A +
Sbjct: 27 LTISRITPGSKAA-QSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLS 77
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 46.8 bits (110), Expect = 4e-07
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
N+ I + ++ A + L GD++L VN D N ++AV L P+G +
Sbjct: 21 NDVGIFVAGVLEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL 79
Query: 64 AKPLPIP 70
A+
Sbjct: 80 AQKKKDV 86
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 44.2 bits (105), Expect = 5e-07
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA 64
+ +++++S+ PGG A A + GDR++ VN T + N+S + V+ +K V + +
Sbjct: 28 DRIVLVQSVRPGGAAMK-AGVKEGDRIIKVNGTMVTNSSHLEVVKLIKSGAY--VALTLL 84
Query: 65 KPLPIPDS 72
P S
Sbjct: 85 GSSSGPSS 92
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 44.5 bits (105), Expect = 6e-07
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
I ++ + GG A A L GDR++ VN + + Q + ++ + +++ V
Sbjct: 63 IFVKQVKEGGPAFE-AGLCTGDRIIKVNGESVIGKTYSQVIALIQNSD-TTLELSVMPKD 120
Query: 68 PIPDS 72
P S
Sbjct: 121 SGPSS 125
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 44.3 bits (105), Expect = 7e-07
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
+ + + P GVA A ++ D L+ VN ++ +AS ++ V+ +K + V +
Sbjct: 34 VYMTDITPQGVAMR-AGVLADDHLIEVNGENVEDASHEEVVEKVKKSG-SRVMFLLVDK 90
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 43.8 bits (104), Expect = 7e-07
Identities = 13/64 (20%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P + +I+ + PG A+ A L D +++VN + D V+ ++ +
Sbjct: 26 PEQKGQIIKDIEPGSPAEA-AGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGG-DQTTLL 83
Query: 63 VAKP 66
V
Sbjct: 84 VLDK 87
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 43.5 bits (103), Expect = 8e-07
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
+ I + PG A L A L GD + +++ + +N + +A +KG + + VA+
Sbjct: 29 LAISRVTPGSKAAL-ANLCIGDVITAIDGENTSNMTHLEAQNRIKGCT-DNLTLTVARS 85
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 43.5 bits (103), Expect = 9e-07
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 4 NETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
V+ S+ G AQ +A L GD + +N + V+ L +
Sbjct: 32 YTVHHVVWSVEDGSPAQ-EAGLRAGDLITHINGESVLGLVHMDVVELLLKSG 82
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 43.5 bits (103), Expect = 1e-06
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
+ I SL GG A A + GD +LS++ + +A +K G + + + +
Sbjct: 31 LTISSLKDGGKAS-QAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACT-GSLNMTLQRAS 88
Query: 68 PIPDSSCSQ 76
S
Sbjct: 89 AAAKSEPVS 97
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 43.1 bits (102), Expect = 1e-06
Identities = 12/52 (23%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
+ I L PGG A A + GD +LS++ + + + +A ++ +
Sbjct: 29 LSISRLTPGGKAAQ-AGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLS 79
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 43.2 bits (102), Expect = 2e-06
Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 5 ETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVA 64
++ + ++++ GG A+ A L D +L +NE + + + ++ P I+ +
Sbjct: 35 DSPVRVQAVDSGGPAER-AGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWR 93
Query: 65 KPLP 68
P
Sbjct: 94 VSGP 97
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ
domain, protein, acetylation, cell projection, disease
mutation, membrane; NMR {Homo sapiens}
Length = 128
Score = 43.7 bits (103), Expect = 2e-06
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
IRS+ P A+ + L DR++ VN + V A++ K+ V
Sbjct: 35 QFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDR 91
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 42.7 bits (101), Expect = 2e-06
Identities = 11/52 (21%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
I++ + G A+ A L PGD ++++N N +A ++ + +
Sbjct: 32 IIVTKVTERGKAEA-ADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLR 82
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 42.3 bits (100), Expect = 3e-06
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPL 67
+VI + PG A A L PGD +L+++ + + A +K A + + + +
Sbjct: 31 LVITRITPGSKAAA-ANLCPGDVILAIDGFGTESMTHADAQDRIKAAS-YQLCLKIDRA- 87
Query: 68 PIPDSSCSQVSHAGPGLG 85
S +GP G
Sbjct: 88 --ETRLWSPQVSSGPSSG 103
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 42.0 bits (99), Expect = 4e-06
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
+VI ++ GG+ L GD + VN + + + L+ A ++
Sbjct: 31 LVIARILHGGMVAQQGLLHVGDIIKEVNGQPVGS-DPRALQELLRNASGSVI 81
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI,
signaling protein; 1.80A {Mus musculus}
Length = 106
Score = 42.0 bits (99), Expect = 4e-06
Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
+IR + G A+ A L+ GDR+L +N ++ Q V+ ++ +
Sbjct: 28 HLIRVIEEGSPAEK-AGLLDGDRVLRINGVFVDKEEHAQVVELVRKSG 74
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 42.1 bits (99), Expect = 4e-06
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
+ + S+ GGVA A L GD L+ VN ++ Q V ++ +
Sbjct: 40 TPAFPALQYLESVDEGGVAWR-AGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGN-TLM 97
Query: 61 IGVAKPLPIPD 71
+ V PD
Sbjct: 98 VKVVMVTRHPD 108
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 41.9 bits (99), Expect = 4e-06
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56
+ I + G A L A L PGD + ++N + +A +KG
Sbjct: 34 LTISRVHAGSKAAL-AALCPGDLIQAINGESTELMTHLEAQNRIKGCHD 81
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70
kDa, Na/PI cotransporter C- terminal-associated
protein, NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 41.7 bits (98), Expect = 6e-06
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGA 54
+IR + G A+ A L+ GDR+L +N ++ Q V+ ++ +
Sbjct: 40 HLIRVIEEGSPAEK-AGLLDGDRVLRINGVFVDKEEHAQVVELVRKS 85
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding
protein; PDZ domain, cytoplasm, membrane, polymorphism,
protein binding; 2.70A {Homo sapiens}
Length = 104
Score = 41.3 bits (97), Expect = 8e-06
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
+E +I + A A L GD L ++N + Q V ++ +
Sbjct: 44 CSSEMFTLICKIQEDSPAHC-AGLQAGDVLANINGVSTEGFTYKQVVDLIRSSG 96
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 41.2 bits (97), Expect = 8e-06
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 2 NPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
E V + + AQL A L PGD + SVN ++ + V +K +
Sbjct: 33 QRVEMVTFVARVHESSPAQL-AGLTPGDTIASVNGLNVEGIRHREIVDIIKASG 85
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 40.8 bits (96), Expect = 1e-05
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
P + +I+ + PG A+ A L D +++VN + D V+ ++
Sbjct: 27 PEQKGQIIKDIEPGSPAEA-AGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGG 78
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation,
cell projection, disease mutation, membrane,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 216
Score = 42.5 bits (99), Expect = 1e-05
Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
IRS+ P A+ + L DR++ VN + V A++ K+ V
Sbjct: 35 QFIRSVDPDSPAEA-SGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGG-DETKLLVVDR 91
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 40.5 bits (95), Expect = 2e-05
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 19 AQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRG 57
Q L GD ++ +N+ ++ N S + V LK P G
Sbjct: 42 IQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIG 80
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 40.7 bits (95), Expect = 2e-05
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVK 60
+ + S+ GGVA A L GD L+ VN ++ Q V ++ +
Sbjct: 60 TPAFPALQYLESVDEGGVAWR-AGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGG-NTLM 117
Query: 61 IGVAKPLPIPD 71
+ V PD
Sbjct: 118 VKVVMVTRHPD 128
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 39.2 bits (92), Expect = 3e-05
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 1/50 (2%)
Query: 9 VIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI 58
I S+V A L+ + +N ++ Q L + +
Sbjct: 26 KITSIVKDSSAAR-NGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVV 74
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 38.2 bits (89), Expect = 9e-05
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 9 VIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGV 63
+I SL+ GG+A+ + G R++ +N + ++ V L A G + +
Sbjct: 34 IICSLMRGGIAE-RGGVRVGHRIIEINGQSVVATPHEKIVHILSNAV-GEIHMKT 86
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown
function; 1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 36.5 bits (83), Expect = 0.001
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 3 PNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIG 62
P++ I + + P G A L PGD+++ N N QAV LK + V++
Sbjct: 21 PDDDGIFVTRVQPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLKT-FQNTVELI 77
Query: 63 VAKPLPIPDSSCSQVS 78
+ + + +V
Sbjct: 78 IVREVGNGAKQEIRVR 93
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 35.8 bits (81), Expect = 0.003
Identities = 6/52 (11%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALK 52
+ + + ++ A A L GD++++++ S+ + ++
Sbjct: 491 YKASPQGLDVLNVYHDESAY-HAGLSAGDKIIAIDHLQATEQSVKRILERYI 541
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 33.4 bits (77), Expect = 0.018
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 23 ARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKP 66
A GD +++V+ T + SL L+G V++ + P
Sbjct: 115 AGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAP 158
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 31.5 bits (71), Expect = 0.033
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI 58
+ + S+ G+A L GD +L +N + + L G+
Sbjct: 46 LYVNSVKETGLAS-KKGLKAGDEILEINNRAADALNSSMLKDFLSQPSLGL 95
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 30.3 bits (68), Expect = 0.069
Identities = 9/48 (18%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAP 55
+ + S+ G+A L GD +L +N + + L
Sbjct: 37 LYVNSVKETGLAS-KKGLKAGDEILEINNRAADALNSSMLKDFLSQPS 83
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 31.7 bits (72), Expect = 0.075
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 1 MNPNETVIVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKG 53
N +I +VPG A+ +A L G ++ +N + + +Q
Sbjct: 85 DNDTAYNALISYVVPGSPAE-EAGLQRGHWIMMMNGDYITKKVESELLQGSTR 136
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.16
Identities = 26/118 (22%), Positives = 39/118 (33%), Gaps = 35/118 (29%)
Query: 25 LIPGDRLLSVNETDLNNASLDQAV---------QALKGA-PRGIVKIGVAKPLPIPDSSC 74
LI D L N N + V + L G+ IV + P+ ++
Sbjct: 438 LINKD--LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQ 495
Query: 75 SQVSHA---GPGLGANGLGAAPGLGSNGLGSGLGSNGLGSG--------LGSGPGEYY 121
+ +H GPG G++GLG N G+G L P + Y
Sbjct: 496 FKATHILDFGPG------------GASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 28.2 bits (62), Expect = 0.54
Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 4 NETVIVIRSLVPGGVA-QLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPR 56
T + ++ + ++ + PGDR+L +N T + +++ A+K +
Sbjct: 42 YATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQTSQ 95
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 28.8 bits (65), Expect = 0.57
Identities = 6/52 (11%), Positives = 19/52 (36%), Gaps = 3/52 (5%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
+ + A + PGD ++S N+ + + + + + ++
Sbjct: 388 VQVVGASENSAGW-RAGIRPGDIIISANKKPVTD--VKSLQTIAQEKKKELL 436
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 28.8 bits (65), Expect = 0.64
Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGI 58
I I +V G A A L D ++ VN +N S+ + + L P I
Sbjct: 365 IKIDEVVKGSPAA-QAGLQKDDVIIGVNRDRVN--SIAEMRKVLAAKPAII 412
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 28.4 bits (64), Expect = 0.78
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 8/40 (20%)
Query: 5 ETVIVIRSLVPGGVAQL--------DARLIPGDRLLSVNE 36
I +VPG + Q+ D R++ D L V++
Sbjct: 188 LKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQ 227
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 0.80
Identities = 11/60 (18%), Positives = 17/60 (28%), Gaps = 8/60 (13%)
Query: 9 VIRSLVPGGVAQLDARLIPGDRLLSVNETD------LNNASLDQAVQALKGAPRGIVKIG 62
V L + L L+ +E L+ D + L PR + I
Sbjct: 277 VTDFLSAATTTHI--SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 27.7 bits (62), Expect = 1.4
Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNASLDQAVQALKGAPRGIV 59
+V+ ++ G A L GD ++ N+ + ++ + + L P +
Sbjct: 385 VVVNNVKTGTPAA-QIGLKKGDVIIGANQQAVK--NIAELRKVLDSKPSVLA 433
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 1.9
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 29/54 (53%)
Query: 46 QAVQALKGAPRGIVKIGVAKPLPIPDSSCSQVSHAGPGLGANGLGAAPGLGSNG 99
QA++ L+ + +K L DS AP L
Sbjct: 20 QALKKLQAS----LK------LYADDS-------------------APALAIKA 44
Score = 25.3 bits (54), Expect = 7.9
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 125 EEQEDTEHTSSENLHKSDS 143
E+Q + +S L+ DS
Sbjct: 18 EKQALKKLQASLKLYADDS 36
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 26.4 bits (58), Expect = 2.5
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNAS-LDQAVQALKGAPRGIVKIGV 63
+ I S+VPG A L PG + S+N +N + A++ + ++ I
Sbjct: 27 VQIDSVVPGSPA--SKVLTPGLVIESINGMPTSNLTTYSAALKTIS--VGEVINITT 79
>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5
Length = 105
Score = 26.0 bits (57), Expect = 2.6
Identities = 7/48 (14%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 10 IRSLVPGGVAQLDARLIPGDRLLSVNETDLNNAS-LDQAVQALKGAPR 56
+ + + L GD +++N DL + + ++ Q++
Sbjct: 41 VSPGKDPVLFE-SIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTE 87
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 25.7 bits (57), Expect = 3.0
Identities = 10/46 (21%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNAS-LDQAVQALK 52
+ + S++P A RL GDR+ +++ +N + + V+ +
Sbjct: 7 VYVMSVLPNMPA--AGRLEAGDRIAAIDGQPINTSEQIVSYVREKQ 50
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 26.8 bits (58), Expect = 3.1
Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 8/82 (9%)
Query: 26 IPGDRLLSVNETDLNNASLDQAVQALKGAPRGIVKIGVAKPLPIPDSSCSQVSHAGPGLG 85
G+ L+SV+ A D A + G I V P+ + L
Sbjct: 414 FLGNALVSVSSDQ-TGAKFDGATMSNNTHVSGDDHIDVTNPMKDLAKGYMYGFVSTDKLA 472
Query: 86 ANGLGAAPGLGSNGLGSGLGSN 107
A G+ SN S G +
Sbjct: 473 A-------GVWSNSQNSYGGGS 487
>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type
2 secretion system, protein transport, membrane
protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5
Length = 87
Score = 25.2 bits (55), Expect = 3.8
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 25 LIPGDRLLSVNETDLNNAS-LDQAVQALKGAPR 56
L GD +++N DL + + ++ Q++
Sbjct: 37 LQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTE 69
>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis
inhibition, bromopyruvate, amino-acid biosynthesis; HET:
FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A
3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A
Length = 644
Score = 25.9 bits (57), Expect = 6.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 45 DQAVQALKGAPRGIV 59
++ QA GAPR IV
Sbjct: 152 ERTFQACSGAPRAIV 166
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 24.9 bits (55), Expect = 6.2
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 8 IVIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNAS-LDQAVQALK 52
I S+V A ++ GD+++S + + +A L + + K
Sbjct: 3 IYASSVVENMPA--KGKIEVGDKIISADGKNYQSAEKLIDYISSKK 46
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A
{Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3
Length = 731
Score = 25.8 bits (57), Expect = 6.5
Identities = 12/42 (28%), Positives = 15/42 (35%), Gaps = 9/42 (21%)
Query: 81 GPGLGANGLGAAP--------GLG-SNGLGSGLGSNGLGSGL 113
G LG P GLG N G+ G + SG+
Sbjct: 266 GADDPEENLGPEPEAAPIEQQGLGWQNKNGNSKGGEMITSGI 307
>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane,
cell membrane, membrane, metal-binding,
metalloprotease, transmembrane; 1.67A {Escherichia coli
k-12} PDB: 2zpl_A
Length = 95
Score = 24.5 bits (53), Expect = 7.6
Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 9 VIRSLVPGGVAQLDARLIPGDRLLSVNETDLNNAS-LDQAVQALKGAPRGIVKI 61
V+ + +A +A++ PG L +V+ + + + + G + +
Sbjct: 5 VVGEIAANSIAA-EAQIAPGTELKAVDGIETPDWDAVRLQLVDKIGDESTTITV 57
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.133 0.377
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,089,568
Number of extensions: 119356
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 194
Length of query: 144
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 59
Effective length of database: 4,328,508
Effective search space: 255381972
Effective search space used: 255381972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 52 (24.6 bits)