Query psy3209
Match_columns 567
No_of_seqs 489 out of 2950
Neff 10.7
Searched_HMMs 13730
Date Fri Aug 16 19:07:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3209.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3209hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 9.2E-38 6.7E-42 316.6 25.0 399 112-536 20-432 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 100.0 6.1E-28 4.5E-32 240.4 31.2 382 126-545 16-410 (417)
3 d1pw4a_ f.38.1.1 (A:) Glycerol 99.4 6.2E-13 4.5E-17 132.4 16.4 161 376-538 45-207 (447)
4 d1pv7a_ f.38.1.2 (A:) Lactose 99.4 3.7E-13 2.7E-17 132.1 11.8 142 152-293 254-401 (417)
5 d2fyuk1 f.23.15.1 (K:1-53) Sub 13.7 94 0.0068 18.2 3.1 39 236-274 3-41 (53)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 13.1 83 0.006 15.2 3.0 11 287-297 18-28 (30)
7 d1u7ga_ f.44.1.1 (A:) Ammonium 10.7 4.6E+02 0.034 22.5 10.1 47 220-266 285-331 (383)
8 d3b60a2 f.37.1.1 (A:10-328) Mu 7.6 4.9E+02 0.036 20.5 17.0 15 270-284 155-169 (319)
9 d3proc1 d.52.1.1 (C:6-85) Alph 6.5 3.3E+02 0.024 17.4 4.4 41 140-185 4-44 (80)
10 d1q90n_ f.23.27.1 (N:) PetN su 3.8 2.9E+02 0.021 13.4 3.1 22 158-179 7-28 (31)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=9.2e-38 Score=316.62 Aligned_cols=399 Identities=12% Similarity=0.036 Sum_probs=284.9
Q ss_pred hHHHHHHHHHhhhhHHHhhhhccchhhhhhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHH
Q psy3209 112 YTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLL 191 (567)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~ 191 (567)
++.+|.++..++++.+..+++...++.+.|.+. | +|+|.++.|++.+++.++++++++++|+++||+|||+++.
T Consensus 20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~-----~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~ 93 (447)
T d1pw4a_ 20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-E-----QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLP 93 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-S-----STTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----hCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 344677777778888888888888888888764 5 7999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHh----hHHHHHHHHHHHhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhhh
Q psy3209 192 LTSLVFLTSSLLTIFAQ----SSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGP 267 (567)
Q Consensus 192 ~~~~~~~i~~~~~~~~~----~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~ 267 (567)
+++++.+++.+++++++ +++.++++|++.|++.|...+...+++.|++|+++|++++++.+.+..+|.++++.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~ 173 (447)
T d1pw4a_ 94 AGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 173 (447)
T ss_dssp HHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhh
Confidence 99999999999998864 67889999999999999999999999999999999999999999999999999888776
Q ss_pred hh-----hhHHHHHHHHHHHHHH-HHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhccc
Q psy3209 268 YI-----QYQTLNIILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNK 341 (567)
Q Consensus 268 ~l-----~wr~~f~~~~~~~~~~-~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (567)
.. +||+.|++.+++.++. ++.+++++|+|+.. .....++. ..+..++.. ....++....+
T Consensus 174 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~~~~--~~~~~~~~~~~ 239 (447)
T d1pw4a_ 174 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC-GLPPIEEY-----------KNDYPDDYN--EKAEQELTAKQ 239 (447)
T ss_dssp HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT-CCCSCTTT-----------CCC---------------CCTH
T ss_pred hHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhc-ccchhhhh-----------hhhcccchh--hccccccchhh
Confidence 54 7999999988887764 55556677776432 11100000 000000000 00001111122
Q ss_pred ccHHHHhcchhhhHHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC--chhHHHHHHHHHHHHHHHhhHHHHHhhhcc
Q psy3209 342 SGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL--IGRTECLIIFSVLLVVTNFACSPLVDIAGR 419 (567)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~ 419 (567)
...+..++++..+ ......+......+....+.+.++.+..+. ...+.......+..+++.+++|++.||++|
T Consensus 240 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 314 (447)
T d1pw4a_ 240 IFMQYVLPNKLLW-----YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR 314 (447)
T ss_dssp HHHHHTSSCHHHH-----HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHcCchHH-----HHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccc
Confidence 2344455544332 222233333334567778888888876554 445667777888899999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHH-H
Q psy3209 420 KTLNMLSAFLSSGVMIVLAACF-YWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALA-S 497 (567)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g-~ 497 (567)
++..........+......... ....+.+...+..++.+++... ..+..+.+..|.+|++.||++.|+.+.+.+++ .
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~ 393 (447)
T d1pw4a_ 315 GNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS 393 (447)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH-HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 7654444333333222222211 1122344445555555555443 34444588999999999999999999988875 5
Q ss_pred HHHHHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHhcc
Q psy3209 498 FLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIF 536 (567)
Q Consensus 498 ~i~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 536 (567)
.++|.+.|.+.+..|+...|.+.+++.+++.++.+++.+
T Consensus 394 ~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 394 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668999999999999988888888877777766655543
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.96 E-value=6.1e-28 Score=240.43 Aligned_cols=382 Identities=11% Similarity=0.005 Sum_probs=252.3
Q ss_pred HHHhhhhccchhhhhhh-hhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHH
Q psy3209 126 IFIVGCWLTWPSVALYK-WQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLT 204 (567)
Q Consensus 126 ~~~~~~~~~~~~~~l~~-i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~ 204 (567)
.+...+..+...+.+|. +.++ +|+|+.++|++.+++.++..++++++|+++||+|||++++++..+..++.++.
T Consensus 16 ~f~~~~~~~~~~~~l~~~l~~~-----~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~ 90 (417)
T d1pv7a_ 16 FFFYFFIMGAYFPFFPIWLHDI-----NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF 90 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence 34445555566777776 5566 89999999999999999999999999999999999999999999999999988
Q ss_pred HHHhhHHH----HHHHHHHHhccccccccchhhhhhcccCC--CcchhHHHHHHHHHHHHHHHHHHhhhhh---hhHHHH
Q psy3209 205 IFAQSSYW----LFTSRLLSGIGKGVGFTVVPMYIAEITDK--EIRGTLSTMFTGHLYGGILFSLCVGPYI---QYQTLN 275 (567)
Q Consensus 205 ~~~~~~~~----l~~~R~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~i~~~l~~~l---~wr~~f 275 (567)
.+..+... .++.+++.+.+.+...........+..++ +++.+..+........|..+++.+++.+ +|+..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 170 (417)
T d1pv7a_ 91 FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVF 170 (417)
T ss_dssp HHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccc
Confidence 88766554 34556666666665555555444444332 2345566677777777888888877776 556666
Q ss_pred HHHHHHHHH-HHHHhhcccCCchhHHhhcCcHHHHHHHHHHhcCCCcchHHHHHHHHHHhhhhhcccccHHHHhcchhhh
Q psy3209 276 IILGVIPLV-FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYR 354 (567)
Q Consensus 276 ~~~~~~~~~-~~~~~~~lpesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (567)
+.......+ .++..++++|+|+.. +.++++. ...+........+..+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~ 223 (417)
T d1pv7a_ 171 WLGSGCALILAVLLFFAKTDAPSSA---TVANAVG------------------------ANHSAFSLKLALELFRQPKLW 223 (417)
T ss_dssp HHHHHHHHHHHHHHHSSCCCSCSSS---CSSHHHH------------------------SCCCCCCHHHHHHHTTSSHHH
T ss_pred cchhhHHHHHHHHHHHHhcccccch---hhhhhhh------------------------hhccccccccccccccccccc
Confidence 555555544 556666677776421 1111100 000111111222333333222
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHH
Q psy3209 355 KALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGV 433 (567)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 433 (567)
............. .........+........... ...........++..++..+.+++.||.++++.+..+..+.+++
T Consensus 224 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~ 302 (417)
T d1pv7a_ 224 FLSLYVIGVSCTY-DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR 302 (417)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHH-HhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHh
Confidence 2222222222211 111111122222222211111 22334555667788899999999999999999999888887777
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhhccccchhhhhcccCCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhc
Q psy3209 434 MIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIA-SIAFALASFLINKFYKIVQINFG 512 (567)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~i~g~l~~~~g 512 (567)
.+.+.. ..+.+..++..++.+++.+... +...++..|.+|++.|+++.|+. +....+|.+++|.+.|.+.|..|
T Consensus 303 ~~~~~~----~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g 377 (417)
T d1pv7a_ 303 IIGSSF----ATSALEVVILKTLHMFEVPFLL-VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG 377 (417)
T ss_dssp HHHHHT----CCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC
T ss_pred hhcccc----ccccchhhHHHHHHHHHHHHHH-HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 666554 3355666666667777766544 44458999999999999999986 45677999999999999999999
Q ss_pred cchhhhHHHHHHHHHHHHHHHhccCCCCCCHHH
Q psy3209 513 LYYMFAFYAICSGINVLFTFFFIFETKGKSFQQ 545 (567)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (567)
+..++++.+++.++..++..+..++++.....+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 378 FQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 999999999888888888777777766665543
No 3
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.44 E-value=6.2e-13 Score=132.43 Aligned_cols=161 Identities=14% Similarity=0.102 Sum_probs=124.4
Q ss_pred HHhhhhhhhhccCC-chhHHHHHHHHHHHHHHHhhHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q psy3209 376 LSYASTTLPEHHGL-IGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFT 454 (567)
Q Consensus 376 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (567)
....| ++++.+.+ .+.++......++..++.++.|+++||+|||+.+..+.++..++.++.+.......+.+..++..
T Consensus 45 ~~~~p-~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (447)
T d1pw4a_ 45 ALAMP-YLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 123 (447)
T ss_dssp HHHHH-HTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred HHHHH-HHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHH
Confidence 33444 34454444 67778888899999999999999999999999999999988888877766433333455566666
Q ss_pred HHHHHHhhccccchhhhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccchhhhHHHHHHHHHHHHHHH
Q psy3209 455 SLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINF-GLYYMFAFYAICSGINVLFTFF 533 (567)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~i~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~ 533 (567)
++.+++.+...... ..++.|.+|+++|+.++|+.+....+|..++|.+.+.+.+.. +|+..+++.+++.++..++.+.
T Consensus 124 ~~~g~~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 202 (447)
T d1pw4a_ 124 FLCGWFQGMGWPPC-GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFA 202 (447)
T ss_dssp HHHHHHHHHTHHHH-HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhhHH-HHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHH
Confidence 67777666544444 589999999999999999999999999999999988877654 6778888888877777777666
Q ss_pred hccCC
Q psy3209 534 FIFET 538 (567)
Q Consensus 534 ~~~~~ 538 (567)
+.++.
T Consensus 203 ~~~~~ 207 (447)
T d1pw4a_ 203 MMRDT 207 (447)
T ss_dssp HCCCS
T ss_pred hcccc
Confidence 66543
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.41 E-value=3.7e-13 Score=132.10 Aligned_cols=142 Identities=17% Similarity=0.181 Sum_probs=123.8
Q ss_pred ccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccccccch
Q psy3209 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVV 231 (567)
Q Consensus 152 ~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~ 231 (567)
.+.+....+...+...++..++.++.+++.||+|+|+++.++.++.+++.++.++.++.+.+++.-++.|++.+...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 254 GEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 45567777888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcccCCCcchhHHHHH-HHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHH-Hhhccc
Q psy3209 232 PMYIAEITDKEIRGTLSTMF-TGHLYGGILFSLCVGPYI----QYQTLNIILGVIPLVFFI-TFMFIP 293 (567)
Q Consensus 232 ~~~i~e~~~~~~r~~~~~~~-~~~~~~G~~i~~~l~~~l----~wr~~f~~~~~~~~~~~~-~~~~lp 293 (567)
.+++.|.+|+++|++..++. +....+|.+++|.+.+.+ ||++.|++.+++.++..+ ..++++
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~ 401 (417)
T d1pv7a_ 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999975 566778888888777665 899999998888776444 444444
No 5
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=13.65 E-value=94 Score=18.16 Aligned_cols=39 Identities=5% Similarity=-0.043 Sum_probs=23.2
Q ss_pred hcccCCCcchhHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q psy3209 236 AEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTL 274 (567)
Q Consensus 236 ~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~~~l~wr~~ 274 (567)
+....+++...+..+.-.....|..-+-.+..+-+||..
T Consensus 3 ~k~iG~k~~~ia~~wips~~~~G~a~gl~lvy~TDWkli 41 (53)
T d2fyuk1 3 TRFLGPRYRQLARNWVPTASLWGAVGAVGLVWATDWRLI 41 (53)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhhheeeeeeehHHHH
Confidence 344455555666666666666666655555555577754
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.06 E-value=83 Score=15.18 Aligned_cols=11 Identities=27% Similarity=0.473 Sum_probs=6.2
Q ss_pred HHhhcccCCch
Q psy3209 287 ITFMFIPETPY 297 (567)
Q Consensus 287 ~~~~~lpesp~ 297 (567)
+...|..|.|+
T Consensus 18 ffaiffreppr 28 (30)
T d2axtt1 18 FFAIFFREPPR 28 (30)
T ss_dssp HHHHHTSCCCC
T ss_pred HHHHHhcCCCC
Confidence 33445677764
No 7
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=10.67 E-value=4.6e+02 Score=22.47 Aligned_cols=47 Identities=6% Similarity=-0.081 Sum_probs=24.2
Q ss_pred HhccccccccchhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHHhh
Q psy3209 220 SGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVG 266 (567)
Q Consensus 220 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~i~~~l~ 266 (567)
.|+..|........++.+..+-+.---+.++...+...|.+..++++
T Consensus 285 iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa 331 (383)
T d1u7ga_ 285 IGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFA 331 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhccHHHHHHHHHHHhhcccccccceEeehhhhHHHHHHHHHHhc
Confidence 34444444334444444444444444556666666666666666553
No 8
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=7.58 E-value=4.9e+02 Score=20.47 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=7.4
Q ss_pred hhHHHHHHHHHHHHH
Q psy3209 270 QYQTLNIILGVIPLV 284 (567)
Q Consensus 270 ~wr~~f~~~~~~~~~ 284 (567)
+|+....+.....+.
T Consensus 155 ~~~l~li~l~~~~~~ 169 (319)
T d3b60a2 155 SWQLSIILVVLAPIV 169 (319)
T ss_dssp TTTTHHHHHHHHHHH
T ss_pred hccchhhhhhHHHHH
Confidence 666655544444333
No 9
>d3proc1 d.52.1.1 (C:6-85) Alpha-lytic protease prodomain {Lysobacter enzymogenes [TaxId: 69]}
Probab=6.47 E-value=3.3e+02 Score=17.39 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=23.9
Q ss_pred hhhhhhcccCCCccCChhhHHHHHHHHHHHHHhhhhhhhhhhcccc
Q psy3209 140 LYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFG 185 (567)
Q Consensus 140 l~~i~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~dr~G 185 (567)
+..|..| ||+++.|..--...-.-...+-.-+-.-+.++||
T Consensus 4 ~~AmqRD-----LgLt~~qa~~RLa~E~~A~~~~~~lr~~lg~~fa 44 (80)
T d3proc1 4 KFAMQRD-----LGIFPTQLPQYLQTEKLARTQAAAIEREFGAQFA 44 (80)
T ss_dssp HHHHHHH-----HCCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGEE
T ss_pred HHHHHHH-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 4556777 9999988865555444444444444444444443
No 10
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.81 E-value=2.9e+02 Score=13.43 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhh
Q psy3209 158 KVSWVVATMDLGNILSPIPSGY 179 (567)
Q Consensus 158 ~~~~~~s~~~~~~~~~~~~~g~ 179 (567)
+++|......+.+.+...+||.
T Consensus 7 ~~awaa~~atfsfslslvvwgr 28 (31)
T d1q90n_ 7 QIGWAATCVMFSFSLSLVVWGR 28 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EhHHHHHHHhheeeEEEEEEec
Done!