RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3209
(567 letters)
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 202 bits (517), Expect = 4e-59
Identities = 114/419 (27%), Positives = 208/419 (49%), Gaps = 18/419 (4%)
Query: 146 KEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI 205
+ +V+ +G ++ + +G + D+FGRK +LL+ +++F+ +LL
Sbjct: 35 LTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQG 94
Query: 206 FAQSSYW--LFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSL 263
FA+ + L R++ G+G G +VPMYI+EI K++RG L +++ + GIL +
Sbjct: 95 FAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAA 154
Query: 264 CVGP-------YIQYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWF 316
+G ++ + V ++ I +F+PE+P + ++K + A+ L
Sbjct: 155 IIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLE-EARAVLAKL 213
Query: 317 KGKSQNITEELDEIVLTTNENMK-NKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTI 375
+G ++ +E+ E + +++ K+ + EL + R+ L++ ++ Q+L+G++ I
Sbjct: 214 RG-VSDVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAI 272
Query: 376 LSYASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMI 435
Y S T+ E GL II V+ V F LVD GR+ L +L A + +
Sbjct: 273 FYY-SPTIFETLGLSDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFL 331
Query: 436 VLAACFYWNFDY-WVSYL---FTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASI 491
VL + F LF ++LG G +P ++SELFP V+ A +IA+
Sbjct: 332 VLGVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATA 391
Query: 492 AFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETKGKSFQQIQNIL 550
A LA+FLI + I+ G Y+F +A + +LF FFF+ ETKG++ ++I +
Sbjct: 392 ANWLANFLIGFLFPIITGAIG-GYVFLVFAGLLVLFILFVFFFVPETKGRTLEEIDELF 449
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 185 bits (471), Expect = 3e-52
Identities = 106/413 (25%), Positives = 195/413 (47%), Gaps = 31/413 (7%)
Query: 160 SWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI---FAQSSYWLFTS 216
VV+ +G + + +G++ D+FGRK +LL+ +L+F+ ++L FA S L
Sbjct: 74 GLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVG 133
Query: 217 RLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPY-------I 269
R+L GIG G+ +VPMY++EI K +RG L++++ + GIL + G +
Sbjct: 134 RVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTL 193
Query: 270 QYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDE 329
++ + + + F+ F+PE+P + + K A+KSL +G S E LDE
Sbjct: 194 GWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGR-VEEARKSLARLRGTSGEDKELLDE 252
Query: 330 -----IVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTL- 383
I + + S S R+ L + +V + Q+ +G++ I+ Y+ T
Sbjct: 253 LELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFE 312
Query: 384 ----PEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAA 439
H + II + F LVD GR+ L ++ A + + VL
Sbjct: 313 NAGVSTDHAFLVS----IIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGI 368
Query: 440 CFY---WNFDYWVSYL---FTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAF 493
+ F LF +++G G +P ++SE+FP +++ SIA A
Sbjct: 369 LGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAAN 428
Query: 494 ALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETKGKSFQQI 546
LA+F++ + + + G+ +F F+ + + ++F +FF+ ETKG++ ++I
Sbjct: 429 WLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 122 bits (308), Expect = 8e-30
Identities = 110/447 (24%), Positives = 198/447 (44%), Gaps = 60/447 (13%)
Query: 150 LPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQS 209
L + + VA+ +G I+ GY ++FGR+++L + +++F S+L
Sbjct: 48 LSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISAL------G 101
Query: 210 SYW---LFTS---------------RLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMF 251
S W FTS R++ GIG G+ + PMYIAEI IRG L +
Sbjct: 102 SAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFN 161
Query: 252 TGHLYGGILFSLCVGPYIQYQTLNIIL-----------GVIPLVFFITF-MFIPETPYFH 299
+ G L V +I L IP + F+ F+PETP +
Sbjct: 162 QFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYL 221
Query: 300 IIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALII 359
+ + + A+ L G + T+ L EI + + K+G + L + +I+
Sbjct: 222 MSRGKQE-QAEGILRKIMGNTLA-TQALQEIKHSLDH--GRKTGGKLL----MFGVGVIV 273
Query: 360 V-LVTSFLQRLSGVSTILSYASTTLPEHHGLIG-RTECLIIFSVLLVVTNFACSPL---- 413
+ ++ S Q+ G++ +L YA PE +G T+ ++ ++++ V N + L
Sbjct: 274 IGVMLSVFQQFVGINVVLYYA----PEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMT 329
Query: 414 VDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLL 473
VD GRK L ++ A + M L FY V+ L + +++ G + LL
Sbjct: 330 VDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLL 389
Query: 474 SELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLY----YMFA--FYAICSGIN 527
SE+FP ++ A +IA A +A++ ++ + ++ N L F+ Y +
Sbjct: 390 SEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 449
Query: 528 VLFTFFFIFETKGKSFQQIQNILKKKT 554
LF + F+ ETKGK+ ++++ + + +T
Sbjct: 450 ALFMWKFVPETKGKTLEEMEALWEPET 476
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 85.2 bits (211), Expect = 6e-18
Identities = 63/354 (17%), Positives = 121/354 (34%), Gaps = 42/354 (11%)
Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSY 211
+ ++ ++ LG L+ +G + D+FGR+ LL+ L+F LL +FA S +
Sbjct: 27 LGISPTEIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLW 86
Query: 212 WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-- 269
L R+L G+G G F IA+ E RG + + G +G +
Sbjct: 87 LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLAS 146
Query: 270 --QYQTLNIILGVIPLVFFI-TFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEE 326
++ +IL ++ L+ + + +P P + A + +K
Sbjct: 147 LFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWK--------- 197
Query: 327 LDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEH 386
+ ++ L+ + L +L+Y
Sbjct: 198 -------------------------LLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVL 232
Query: 387 H-GLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNF 445
+ L + +L + L D GR+ +L+ L + LA
Sbjct: 233 GLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLAL-LSLTE 291
Query: 446 DYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFL 499
+ L G L + L+S+L P + +A+ + + A +L L
Sbjct: 292 SSLWLLVALLLLGFGAGLVFPAL-NALVSDLAPKEERGTASGLYNTAGSLGGAL 344
Score = 42.4 bits (100), Expect = 4e-04
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Query: 148 YVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSL---LT 204
Y L A ++ L + + G + D+ GR+ LLL L+ + ++L L
Sbjct: 228 YQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALL 287
Query: 205 IFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFS 262
+SS WL + LL G G G+ F + ++++ KE RGT S ++ G
Sbjct: 288 SLTESSLWLLVALLLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALG 345
Score = 38.6 bits (90), Expect = 0.007
Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 5/145 (3%)
Query: 398 IFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLF 457
FS+ + L D GR+ + + + + + W+ + L
Sbjct: 40 AFSLGYALAQPLAGRLSDRFGRRRV----LLIGLLLFALGLLLLLFASSLWLLLVLRVLQ 95
Query: 458 GITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMF 517
G+ L+++ FP + A + S F L + L ++ FG F
Sbjct: 96 GLGGGALFPAA-AALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAF 154
Query: 518 AFYAICSGINVLFTFFFIFETKGKS 542
AI + + + + +S
Sbjct: 155 LILAILALLAAVLAALLLPRPPPES 179
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 78.9 bits (195), Expect = 7e-16
Identities = 43/146 (29%), Positives = 69/146 (47%), Gaps = 4/146 (2%)
Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSY 211
L A + +V+ LG L + +GY+ D+FGR+ LLL L+F SLL FA S +
Sbjct: 29 LGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLW 88
Query: 212 WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYI-- 269
L R L G+G G + IAE + RG +F+ G L +G +
Sbjct: 89 LLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAE 148
Query: 270 --QYQTLNIILGVIPLVFFITFMFIP 293
++ L +IL ++ L+ + +F+
Sbjct: 149 SLGWRWLFLILAILGLLLALLLLFLL 174
Score = 59.6 bits (145), Expect = 1e-09
Identities = 34/185 (18%), Positives = 63/185 (34%), Gaps = 7/185 (3%)
Query: 353 YRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGR--TECLIIFSVLLVVTNFAC 410
+ L+++ + FL G +L+Y L E GL L +F + ++
Sbjct: 173 LLRLLLLLALAFFLL-SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLG 231
Query: 411 SPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPT 470
L D GR+ L +L L + + + + L G + T
Sbjct: 232 GLLSDRLGRRRLLLLIGLL---LAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLT 288
Query: 471 TLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLF 530
L SEL P + +A+ + + +L L ++ G +F A + + L
Sbjct: 289 -LASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347
Query: 531 TFFFI 535
Sbjct: 348 LLLLP 352
Score = 56.9 bits (138), Expect = 9e-09
Identities = 46/188 (24%), Positives = 73/188 (38%), Gaps = 10/188 (5%)
Query: 116 AIAAFSASLPIFIVGCWLTW-----PSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGN 170
+A L ++ L + L + L A + +++ LG
Sbjct: 165 LLALLLLFLLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGG 224
Query: 171 ILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI-FAQSSYWLFTSRLLSGIGKGVGFT 229
IL + G + D+ GR+ LLL L+ LL + A S L + LL G G G F
Sbjct: 225 ILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFP 284
Query: 230 VVPMYIAEITDKEIRGTLSTMFTGHLY-GGILFSLCVGP---YIQYQTLNIILGVIPLVF 285
+ +E+ E RGT S +F GG L L G Y + +IL + L+
Sbjct: 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLA 344
Query: 286 FITFMFIP 293
+ + +P
Sbjct: 345 ALLLLLLP 352
Score = 45.0 bits (107), Expect = 6e-05
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 5/138 (3%)
Query: 398 IFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLF 457
FS+ + + L D GR+ + +L L + ++LA W+ + L
Sbjct: 42 AFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA----SSLWLLLVGRFLL 97
Query: 458 GITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMF 517
G+ L++E FP + A + S F L + L ++ + G ++F
Sbjct: 98 GLGGGALYPAAA-ALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLF 156
Query: 518 AFYAICSGINVLFTFFFI 535
AI + L F +
Sbjct: 157 LILAILGLLLALLLLFLL 174
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 77.7 bits (192), Expect = 4e-15
Identities = 89/382 (23%), Positives = 160/382 (41%), Gaps = 29/382 (7%)
Query: 168 LGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVG 227
+G +L GY+ D+FGRK LLL++LV S +LT F+ + RLL G+G G G
Sbjct: 138 VGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIG-G 196
Query: 228 FTVVPM-YIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQ-YQTLNIILGVIPLVF 285
V + E K+ R + T+ G++ V +I ++ L + + + +F
Sbjct: 197 IWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLF 256
Query: 286 FITFMFIPETPYFHIIKDNNQVAAK--KSLEWFKGKSQNITEELDEIVLTTNENM-KNKS 342
F+ F+PE+P + I + + A K + + GK E+ + L + + K +
Sbjct: 257 FLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPA--EVLSLSLEKDLSSSKKQY 314
Query: 343 GYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVL 402
+ +L + RK + +++ F +T SY L G +G L +F
Sbjct: 315 SFLDLFRTPNLRKTTLCLMMLWF-------TTAFSYYG--LVLDLGNLGGNIYLDLFISG 365
Query: 403 LV--VTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWV--SYLFTSLFG 458
LV L+D GR+ S L+ +++L Y++ + FG
Sbjct: 366 LVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVP--VDLYFLRTALAVLGKFG 423
Query: 459 ITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFA 518
IT + + + T +EL+PT V++ + S + S + + + L
Sbjct: 424 ITSAFQMVYLYT---AELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPL--V 478
Query: 519 FYAICSGINVLFTFFFIFETKG 540
+ + + + T F ETKG
Sbjct: 479 LFGGLALLAGILTLFLP-ETKG 499
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 68.9 bits (169), Expect = 2e-12
Identities = 69/356 (19%), Positives = 132/356 (37%), Gaps = 34/356 (9%)
Query: 149 VLPFELDAEKVSWVVATMDLGNILS---------PIPSGYIMDKFGRKNTLLLTSLVFLT 199
+ F A W + + LG + S + G + D+ GR+ LL + L+F
Sbjct: 35 AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRRRVLLWSILLFSV 94
Query: 200 SSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGT-LSTMFTGHLYGG 258
+LL A + L R L+G+G G + ++E K RGT + MF G+ G
Sbjct: 95 FTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGA 154
Query: 259 I---LFSLCVGPYIQYQTLNIILGVIPLVFF-ITFMFIPETPYFHIIKDNNQVAAKKSLE 314
+ + P +++L + G+ PL+ + F+PE+ F + K V +
Sbjct: 155 AVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVN-- 212
Query: 315 WFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVST 374
Q E + +S ++ L + R +++ L+ L L GV
Sbjct: 213 --AIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFML--LVGVYF 268
Query: 375 ILSY-----ASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFL 429
+ ++ G +F+ V+ + L D G + L
Sbjct: 269 LTNWLPKLMVELGFSLSLAATG----GALFNFGGVIGSIIFGWLADRLGPRV--TALLLL 322
Query: 430 SSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSA 485
V VL ++ + L ++ G + G + L++ +PT ++++
Sbjct: 323 LGAVFAVLVGSTLFSPT--LLLLLGAIAGFFVNGGQSGLY-ALMALFYPTAIRATG 375
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 59.6 bits (145), Expect = 1e-10
Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 5/141 (3%)
Query: 160 SWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLL 219
++A LG ++ SG + D+FGRK LL+ +F+ S+ + + + L +R L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 220 SGIGKGVGFTVVPMYIAEITDKEIR----GTLSTMFTGHLYGGILFSLCVGPYIQYQTLN 275
G G IA+I E R G +S G + ++ ++
Sbjct: 61 QGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120
Query: 276 IILGVIPLVFFIT-FMFIPET 295
+ L ++ L FI +PET
Sbjct: 121 LFLAILALAAFILLAFLLPET 141
Score = 33.4 bits (77), Expect = 0.099
Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 5/143 (3%)
Query: 396 LIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTS 455
L +++ ++ + L D GRK + ++ F + ++ A F + + V +
Sbjct: 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLF----IFVLSTAMFALSSNITVLIIARF 59
Query: 456 LFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYY 515
L G + + L+++++P + A + S AL L ++ G
Sbjct: 60 LQGFGAAFALVAG-AALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRA 118
Query: 516 MFAFYAICSGINVLFTFFFIFET 538
F F AI + + F + ET
Sbjct: 119 PFLFLAILALAAFILLAFLLPET 141
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 56.9 bits (138), Expect = 1e-08
Identities = 45/155 (29%), Positives = 75/155 (48%), Gaps = 11/155 (7%)
Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSY 211
F LD ++ W + LG + + G + D+ GRK L+++ +F SL T A
Sbjct: 45 FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFP 104
Query: 212 WLFTSRLLSGIGKGVGFTVVPMYIA---EITDKEIRGT-LSTMFTGHLYGGILFSL--CV 265
L +RLL+G+G G +P IA E +RGT +S M+ G +GG L S+ +
Sbjct: 105 SLLVARLLTGVGLG---GALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVL 161
Query: 266 GPY-IQYQTLNIILGVIPL-VFFITFMFIPETPYF 298
++ + + GV PL + + ++PE+ F
Sbjct: 162 AAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAF 196
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 51.5 bits (124), Expect = 6e-07
Identities = 75/402 (18%), Positives = 138/402 (34%), Gaps = 88/402 (21%)
Query: 164 ATMDLGNILSPIPS---GYIMDKFGRKNTLLLTSLVFLTSS----LLTIFAQSSYW---- 212
AT G + P+ + G+ D+ GRK TL++T L+ + LL +A W
Sbjct: 39 ATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPIL 98
Query: 213 LFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQ 272
L +RL+ G G + +Y+AE RG + G+L + + Y
Sbjct: 99 LLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYL 158
Query: 273 T---------------LNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFK 317
++ +L +I L + ETP F ++ ++ E
Sbjct: 159 LGDDALLEWGWRIPFLVSAVLVLIGLYLRRN---LEETPVFEKAQEKHKKKRGPIAETLT 215
Query: 318 GKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILS 377
+ +L G + Y L+T++L +
Sbjct: 216 KHRK-------PFLLGL--------GLVIATTTTFY-------LITTYLP---------T 244
Query: 378 YASTTL--PEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMI 435
Y + TL + L+ LI+F + + ++ L D GR+ + ++
Sbjct: 245 YLTQTLGLSANSALLVLMLSLILFFITIPLSGA----LSDRIGRRPVLII--------FT 292
Query: 436 VLAACFYWNF--------DYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVK----S 483
VLAA + + + + + G + + L ELFPT V+ S
Sbjct: 293 VLAALLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSFL-PELFPTEVRYTGAS 351
Query: 484 SAASIASIAFA-LASFLINKFYKIVQINFGLYYMFAFYAICS 524
A ++A F A ++ + + + Y A A+
Sbjct: 352 LAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALALIG 393
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 50.5 bits (121), Expect = 2e-06
Identities = 91/454 (20%), Positives = 176/454 (38%), Gaps = 80/454 (17%)
Query: 162 VVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSS------YWLFT 215
V + +G + + G++ DK GRK + ++ + +++ + + S L
Sbjct: 61 VNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCF 120
Query: 216 SRLLSGIGKGVGFTVVPMYIAEITDKEIRGTL-STMFT----GHLYGGILFSLCVG---- 266
R G+G G + + + +E K+ RG + + +F G L G I+ + +
Sbjct: 121 WRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKH 180
Query: 267 --PYIQY-------------QTLNIILGVIPLVFFITFMF---IPETP-YFHIIKDNNQV 307
I++G + + F IPETP Y + + +
Sbjct: 181 SLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQ 240
Query: 308 AAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTS--- 364
AA + K + E DE+ + K+ + + +++ + +L T+
Sbjct: 241 AASDMSAVLQVKIEA---EPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSW 297
Query: 365 FLQRLS--GVS----TIL-----SYASTTLPEHHGL--IGRTECLIIFSVLLV---VTNF 408
FL ++ GV+ IL S + T + L +I + + VT F
Sbjct: 298 FLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVF 357
Query: 409 ACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGIT-YSLGIGI 467
LVDI GRK + ++ F+ + + VL +++ ++ F +++ + + G
Sbjct: 358 ----LVDIIGRKPIQLMGFFILTVLFFVLGFA----YNHLSTHGFLAIYVLAQFFANFGP 409
Query: 468 IPTTLL--SELFPTNVKS-----SAAS------IASIAFALASFLINKFYKIVQINFGLY 514
TT + E+FPT +S SAAS I F + K +
Sbjct: 410 NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLA-QHGDPTKGYPTGIWMG 468
Query: 515 YMFAFYAICSGINVLFTFFFIFETKGKSFQQIQN 548
++ +A+ + +LFT I ETKGKS +++
Sbjct: 469 HVLEIFALFMFLGILFT-LLIPETKGKSLEELSG 501
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 48.4 bits (115), Expect = 8e-06
Identities = 59/212 (27%), Positives = 89/212 (41%), Gaps = 29/212 (13%)
Query: 104 HYRRQIMGYTKQAIAAFSASLPIFIVGCWLTWPSVALYKWQTKEYVLPFELDAEKVSWVV 163
H R Q + +A + + +F+VG L PS K+ +P D+ K +
Sbjct: 161 HGRFQWALFFVLGLALMADGVEVFVVGFVL--PSAE------KDLCIP---DSGK-GMLG 208
Query: 164 ATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIG 223
+ LG ++ G + DK GRK LL+ V + + F Q + RLLSG G
Sbjct: 209 LIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFG 268
Query: 224 KGVGFTVVPMYIAEITDKEIRGT-LSTMFTGHLYGGIL-------------FSLCVGPYI 269
G +V Y AE +E RG LS + + GGI +S +G
Sbjct: 269 IGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAY 328
Query: 270 QYQTLN--IILGVIPLVFFI-TFMFIPETPYF 298
Q+ + +I+ P VF I F+PE+P F
Sbjct: 329 QFHSWRVFVIVCAFPCVFAIGALTFMPESPRF 360
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 47.3 bits (113), Expect = 1e-05
Identities = 77/398 (19%), Positives = 148/398 (37%), Gaps = 50/398 (12%)
Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSY 211
L A + +V + G ++ P G+++D+FG + TL + +++ + L FA +
Sbjct: 24 LGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYV 83
Query: 212 WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLY-GGILFSLCVGPYIQ 270
L+ R+L G + F + + +A R T ++F GGI+ VG +
Sbjct: 84 SLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILI 143
Query: 271 ---YQTLNIILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEE 326
+Q II GV+ +++ + FIP+ P K++ +TEE
Sbjct: 144 HFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ---------------------KAKWLTEE 182
Query: 327 LDEIVL-TTNENMKNKSGYRELVSNYSYRKAL----IIVLVTSFLQRLSGVSTILSYAST 381
IV+ + K Y ++ L + L G+ L++ T
Sbjct: 183 EKYIVVGGLLAEQQGKGPST--PKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPT 240
Query: 382 TLPEHHGLIGRTECLIIFSVLLVVTNFAC---SPLVDIAGRKTLNMLSAFLSSGVMIVLA 438
L + GL E + S+ +V L D+ R+ +++ A ++ + ++
Sbjct: 241 YLVQERGL-SILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVL 299
Query: 439 ACFYWNFDYWVS-YLFTSLFGITY-SLGIGIIPTTLLSELFPTNVKSSAASIASIAFALA 496
+ + +Y Y +L + + LG G I L+S+ P N+ + + L
Sbjct: 300 SLLMFATNYVNIPYAALALVALGFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLG 359
Query: 497 SFLINKFYKIVQINFGL----YYMFAFYAICSGINVLF 530
+ I G FA + L
Sbjct: 360 GI-------VGPIVIGAIAATTGSFAGALMVVAALALI 390
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 44.5 bits (106), Expect = 1e-04
Identities = 60/347 (17%), Positives = 113/347 (32%), Gaps = 56/347 (16%)
Query: 161 WVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLS 220
++ LG L + + R+ LL +F+ S+LL+ A S L +R L+
Sbjct: 52 QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALA 111
Query: 221 GIGKGVGFTVVPMYIAEITDKEIRG-TLSTMFTGHLYGGILFSLCVGPYI-QY----QTL 274
G+ GV +++ A + RG L+ +FTG L + + +G ++ Q T
Sbjct: 112 GLAHGVFWSIAAALAARLVPPGKRGRALALVFTG-LTLATVLGVPLGTFLGQLFGWRATF 170
Query: 275 NIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTT 334
I + L + + +P + +
Sbjct: 171 LAIAVLALLALLLLWKLLP---------PSEISGSLPG---------------------- 199
Query: 335 NENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGR-- 392
L+ L+ + ++G + +Y L G
Sbjct: 200 -----PLRTLLRLLRRPGVLLGLLATFLF-----MTGHFALYTYIRPFLESVAGFSVSAV 249
Query: 393 TECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYL 452
+ L+ F + + N L D R+ L + + L A + ++
Sbjct: 250 SLVLLAFGIAGFIGNLLGGRLADRGPRRAL----IAALLLLALALLALTFTGASPALALA 305
Query: 453 FTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFL 499
L+G +S + + T L+ L P + A S+ AF L L
Sbjct: 306 LLFLWGFAFSPALQGL-QTRLARLAP-DAADLAGSLNVAAFNLGIAL 350
Score = 29.1 bits (66), Expect = 6.5
Identities = 19/117 (16%), Positives = 35/117 (29%), Gaps = 6/117 (5%)
Query: 148 YVLPF-----ELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSL 202
Y+ PF VS V+ + + + G + D+ R+ + L+ L
Sbjct: 233 YIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADRGPRRALIAALLLLALALLA 292
Query: 203 LTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGI 259
LT S L G + +A + + ++ GI
Sbjct: 293 LTFTGASPALALALLFLWGFAFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGI 348
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 43.1 bits (102), Expect = 2e-04
Identities = 33/131 (25%), Positives = 52/131 (39%), Gaps = 9/131 (6%)
Query: 119 AFSASLPIFIVG--CWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIP 176
S F + W + +A+ + L ++ +VA L + I
Sbjct: 2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDD-----LGLSTAQLGNLVAVPVLAGAVLRII 56
Query: 177 SGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYW-LFTSRLLSGIGKGVGFTVVPMYI 235
G+++DKFG + T L+ L+ L A SY L RL GI G F +I
Sbjct: 57 LGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIA-GGSFASCMPWI 115
Query: 236 AEITDKEIRGT 246
+ K+I+GT
Sbjct: 116 SFFFPKKIQGT 126
>gnl|CDD|225133 COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport
and metabolism].
Length = 417
Score = 40.7 bits (96), Expect = 0.002
Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 12/141 (8%)
Query: 111 GYTKQAIAAFSASLPIFIVG--CWLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDL 168
+ A S F VG W + + ++ F L + +VA L
Sbjct: 7 RGKRIARRNLWLSTLAFDVGFMVWTLFSPLGVF------IKSDFGLSEGQKGLLVAIPIL 60
Query: 169 GNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQS--SYWLF-TSRLLSGIGKG 225
L +P G++ D+FG + +L+ L+ L L FA + S W LL G+
Sbjct: 61 VGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGA 120
Query: 226 VGFTVVPMYIAEITDKEIRGT 246
F V + KE +G
Sbjct: 121 S-FAVGMPNASFFFPKEKQGL 140
>gnl|CDD|184957 PRK14995, PRK14995, methyl viologen resistance protein SmvA;
Provisional.
Length = 495
Score = 40.1 bits (94), Expect = 0.003
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 175 IPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
+P G + D+ G K L+L +F +SL F+ ++ WL +R L IG + +VP
Sbjct: 59 LPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAM---IVPAT 115
Query: 235 IAEI 238
+A I
Sbjct: 116 LAGI 119
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 39.5 bits (92), Expect = 0.004
Identities = 65/334 (19%), Positives = 127/334 (38%), Gaps = 38/334 (11%)
Query: 178 GYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAE 237
G D++GR+ ++ + ++F +L FA +F +RL+ GIG G + Y+ E
Sbjct: 68 GLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIE 127
Query: 238 ITDKEIRGTLSTMF-TGHLYGGIL---FSLCVGPY--IQYQTLNIILGVIPLVFFITFMF 291
K +R S + +G+ G ++ V P ++ L + ++P++F +
Sbjct: 128 SWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRAL-FFISILPIIFALWLRK 186
Query: 292 -IPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYRELVSN 350
IPE + + + G+ + + IV+T M +G R
Sbjct: 187 NIPEAEDWKEKHAGKALVRTMVDILYGGEHR-----IANIVMTLAAAMVQSAGKRWPTFV 241
Query: 351 YSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLLVVTNF-- 408
Y L+++++ + L + +Y L GL T + ++V +N
Sbjct: 242 Y-----LVVLVLFANLYSHPIQDLLPTYLKADL----GLSPHT-----VANIVVFSNIGA 287
Query: 409 ACSPLV-----DIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSL 463
V D GR+ + + L+ ++I+ F + V L +
Sbjct: 288 IVGGCVFGFLGDWLGRR-KAYVCSLLAGQLLIIPV--FAIGANVAVLGLGLFFQQMLVQG 344
Query: 464 GIGIIPTTLLSELFPTNVKSSAASIASIAFALAS 497
GI+P L E FPT+ +++ L
Sbjct: 345 IWGILP-KHLGEYFPTDQRAAGLGFTYQLGNLGG 377
Score = 34.9 bits (80), Expect = 0.12
Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 6/116 (5%)
Query: 132 WLTWPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLL 191
+ P L K + L V+ +V ++G I+ G++ D GR+ +
Sbjct: 252 LYSHPIQDLLPTYLKADL---GLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYV 308
Query: 192 LTSLV--FLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRG 245
+ L L + I A + + +G+ + ++P ++ E + R
Sbjct: 309 CSLLAGQLLIIPVFAIGANVAVLGLGLFFQQMLVQGI-WGILPKHLGEYFPTDQRA 363
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 39.1 bits (92), Expect = 0.005
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 155 DAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFA--QSSYW 212
+A S ++ + IL ++ +FG+K T LL L+ +L F S +
Sbjct: 255 NAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWL 314
Query: 213 LFTSRLLSGIGKGVGFTVVPMYIAEITD 240
+L+GIG G+ + +A++ D
Sbjct: 315 FLVLVVLAGIGLGLATLLPWAMLADVVD 342
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 38.8 bits (91), Expect = 0.008
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 159 VSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIF--AQSSYWLFTS 216
++ G ++ I ++ KFG+K L+ L+ LL F A S + +
Sbjct: 274 AYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVA 333
Query: 217 RLLSGIGKGVGFTVVPMYIAEITD 240
+++G+G G+ + +A+ D
Sbjct: 334 LIIAGVGTGIANPLPWAMVADTVD 357
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 38.1 bits (89), Expect = 0.011
Identities = 32/162 (19%), Positives = 59/162 (36%), Gaps = 31/162 (19%)
Query: 151 PFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSS 210
+V WV+ + L N +S +G++ +FG + L+++ F SLL A +
Sbjct: 31 DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNL 90
Query: 211 YWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRG------------------TLSTMFT 252
+ R++ G G G + + I E RG TL
Sbjct: 91 ELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWII 150
Query: 253 GHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFMFIPE 294
+ + +F +N+ +G+I V + F +P
Sbjct: 151 ENYHWRWIF-----------LINVPIGII--VVVVAFFILPR 179
>gnl|CDD|129981 TIGR00903, 2A0129, major facilitator 4 family protein. This family
of proteins are uncharacterized proteins from archaea.
This family includes proteins from Archaeoglobus
fulgidus and Aeropyrum pernix [Transport and binding
proteins, Other].
Length = 368
Score = 36.5 bits (84), Expect = 0.030
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 175 IPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMY 234
IPSG ++D+ ++ L + F ++ + + WL +LL+ +G+
Sbjct: 44 IPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPFLLNAFAPA 103
Query: 235 IAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIP 282
++I + E R + ++ + +Y GI+F+L G I Y + L +IP
Sbjct: 104 ASQIRE-ERRDLVISLLSFAMYLGIIFALAAGLKI-YTAGGLQLLIIP 149
>gnl|CDD|182109 PRK09848, PRK09848, glucuronide transporter; Provisional.
Length = 448
Score = 36.3 bits (84), Expect = 0.035
Identities = 42/175 (24%), Positives = 71/175 (40%), Gaps = 30/175 (17%)
Query: 159 VSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFA--QSSYWLFTS 216
V+ +G + S ++ + G+KNT L+ +L+ LL + S +
Sbjct: 266 TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVA 325
Query: 217 RLLSGIGKGVGFTVVPMYIAE-------ITDKEIRGTLSTMF-----TGHLYGGIL--FS 262
++ IG+GV TV+ A+ +T I G ++F G GG + F
Sbjct: 326 LAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385
Query: 263 LCVGPYI--QYQTLNIILGV------IPLVF----FITFMFIPETPYFH--IIKD 303
L + YI Q QT +I+G+ +P F F+ F P T I+ +
Sbjct: 386 LGLSGYIANQVQTPEVIMGIRTSIALVPCGFMLLAFVIIWFYPLTDKKFKEIVVE 440
>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional.
Length = 394
Score = 36.0 bits (84), Expect = 0.049
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 178 GYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVG 227
G + D+ GR+ +L+ +F+ +L+ +FA S L + + G+G GVG
Sbjct: 64 GPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVG 113
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 36.0 bits (84), Expect = 0.049
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 178 GYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIG 223
G + D++GRK LL +F SL ++ +S+ L R + +G
Sbjct: 62 GPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVG 107
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 35.4 bits (82), Expect = 0.077
Identities = 62/320 (19%), Positives = 111/320 (34%), Gaps = 57/320 (17%)
Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIF--AQS 209
L + ++++ + +S G + D R N + + + +++ +F +
Sbjct: 25 IGLSKTDLGLLLSSFSIAYGISKFVMGSVSD---RSNPRVFLPIGLILCAIVNLFFGFST 81
Query: 210 SYWLFTS-RLLSGIGKGVGFTVVPMYIAEITDKEIRGT-LSTMFTGHLYGGILFSLCVGP 267
S W+ + L+GI +G+G+ + + + RGT +S H GG L V
Sbjct: 82 SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLF 141
Query: 268 YIQYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEEL 327
I + ++P + I I F +++D+ Q E EE
Sbjct: 142 GIAELYSWHWVFIVPGIIAIIVSLI----CFLLLRDSPQSCGLPPAEEMPN------EEP 191
Query: 328 DEIVLTTNENMKNK-SGYRELVSN-------------YSYRKALIIVLVTSFLQRLSGVS 373
D E + K + ++ N Y R I+ +L + G S
Sbjct: 192 DGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVR-TGILDWSPLYLTQEKGFS 250
Query: 374 TILSYASTTLPEHHGLIGRT---------------------ECLIIFSVLLVVTNFACSP 412
+ + TL E GL+G LII S+L+ N A +P
Sbjct: 251 KEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANP 310
Query: 413 LVDIAGRKTLNMLSAFLSSG 432
L+D+ FL G
Sbjct: 311 LMDLI----CLFALGFLVYG 326
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 35.3 bits (82), Expect = 0.090
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 155 DAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLF 214
D E S++ + ++ + ++ KFGRK L+ + L+ FA S+ L
Sbjct: 255 DPELFSYMGSIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLI 314
Query: 215 TS-RLLSGIGKGVGFTVVPMYIAEITD 240
+L+G G+ +V +A+ D
Sbjct: 315 LVLIILAGFGQNFVTGLVWALVADTVD 341
>gnl|CDD|182486 PRK10473, PRK10473, multidrug efflux system protein MdtL;
Provisional.
Length = 392
Score = 34.2 bits (79), Expect = 0.19
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 178 GYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKG----VGFTV 230
G I D+ GRK + + +F+ +SLL A++S R L GIG G V F +
Sbjct: 59 GKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAI 115
>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.
Length = 432
Score = 33.2 bits (76), Expect = 0.34
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 178 GYIMDKFGRKNTLLLTSLVFLTSSLL--------TIFAQSSYWLFTSRLLSGIGKGVGFT 229
G I DK GRK ++L++ + SL+ TI + L +RL G+ G +
Sbjct: 84 GRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYG 143
Query: 230 VVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQY 271
Y++E+ + +G ++ L GG L +L V +Q
Sbjct: 144 TSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQ 185
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 32.7 bits (75), Expect = 0.47
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 7/113 (6%)
Query: 178 GYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIAE 237
G + D++GR+ ++++ ++F +L FA + LF +RL+ G+G + Y+ E
Sbjct: 76 GAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIE 135
Query: 238 ITDKEIRGTLST-MFTGHLYGGIL----FSLCVGPYIQYQTLNIILGVIPLVF 285
K +R S + +G G ++ +SL V P ++ L +G++P++F
Sbjct: 136 SWPKHLRNKASGFLISGFSIGAVVAAQVYSLVV-PVWGWRAL-FFIGILPIIF 186
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 32.4 bits (74), Expect = 0.62
Identities = 31/156 (19%), Positives = 55/156 (35%), Gaps = 15/156 (9%)
Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSY 211
A V + LG + G + D++GR+ LLL +F SSL + +
Sbjct: 35 LSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIE 94
Query: 212 WLFTSRLLSGIGKGVGFTVVPMYIAEITDKE----IRGTLSTMFT-----GHLYGGILFS 262
L R + G G + + +I E I L + L GG +
Sbjct: 95 TLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYIL- 153
Query: 263 LCVGPYIQYQTLNIILGVIPLVFF-ITFMFIPETPY 297
++ + + L + ++ + F +PET
Sbjct: 154 ----VWLSWHAIFAFLSLAGILLSALIFFILPETLP 185
>gnl|CDD|185300 PRK15402, PRK15402, multidrug efflux system translocase MdfA;
Provisional.
Length = 406
Score = 32.2 bits (74), Expect = 0.71
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 159 VSWVVATMD---LGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFT 215
WV +M G + G + D+ GR+ +L F+ + L + AQS
Sbjct: 47 AEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTL 106
Query: 216 SRLLSGIG 223
R L GIG
Sbjct: 107 LRFLQGIG 114
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 32.0 bits (71), Expect = 0.76
Identities = 44/310 (14%), Positives = 96/310 (30%), Gaps = 9/310 (2%)
Query: 150 LPFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFA-- 207
L +++ LG + + +G + D++GR+ L++ L+FL +LL A
Sbjct: 32 LSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN 91
Query: 208 QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIR--GTLSTMFTGHLYGGILFSLCV 265
L RLL G+G G V ++E + + + G G+ +
Sbjct: 92 VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLL 151
Query: 266 GPYIQYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITE 325
L L F+ + ++ + +AA + + +
Sbjct: 152 AGL-----LLGALLWGWRAAFLLAALLGLLLLILVLLLDLLLAAPRLPLAVGLALIELGK 206
Query: 326 ELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPE 385
L +++ + L + +AL++ L + L G +L L
Sbjct: 207 LLLLLLILLLGGLVLLLLGLYLSAAGFGLRALLLGLGLALLALFVGALILLVLLPILLGA 266
Query: 386 HHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNF 445
GL L+++ + + + +++ A
Sbjct: 267 AGGLSALVGAAGGLLALILLGLAGLLGTLVGGSLLVDRLGRSLGLRAILLAGALLLAILL 326
Query: 446 DYWVSYLFTS 455
+ L +
Sbjct: 327 LVLLLALVLT 336
>gnl|CDD|130433 TIGR01366, serC_3, phosphoserine aminotransferase, putative. This
model represents a putative variant form of the serine
biosynthesis enzyme phosphoserine aminotransferase, as
found in Mycobacterium tuberculosis and related high-GC
Gram-positive bacteria [Amino acid biosynthesis, Serine
family].
Length = 361
Score = 31.8 bits (72), Expect = 0.90
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 137 SVALYKW-QTKEYVLPFELDAEKVSWVVATMDL 168
S LY W Q + Y PF D K S VV T+D
Sbjct: 270 SSRLYSWAQERPYATPFVTDPGKRSQVVGTIDF 302
>gnl|CDD|145103 pfam01770, Folate_carrier, Reduced folate carrier. The reduced
folate carrier (a transmembrane glycoprotein) transports
reduced folate into mammalian cells via the carrier
mediated mechanism (as opposed to the receptor mediated
mechanism) it also transports cytotoxic folate analogues
used in chemotherapy, such as methotrexate (MTX).
Mammalian cells have an absolute requirement for
exogenous folates which are needed for growth, and
biosynthesis of macromolecules.
Length = 410
Score = 31.5 bits (72), Expect = 1.4
Identities = 58/257 (22%), Positives = 88/257 (34%), Gaps = 41/257 (15%)
Query: 246 TLSTMFTGHLYGGILFSLCVG-PYIQYQTLNII-LGVIPLVFFITFMFIPETP---YFHI 300
T + G G+L L V + Y TLN I L + F++ F+P +FH
Sbjct: 134 TRAATLVGKFLSGVLGQLLVSLGRVSYFTLNYISLASQVVALFLSL-FLPRPKRSLFFH- 191
Query: 301 IKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNKSGYR---------ELVSNY 351
+KS N+ EE E T E+ + R L S Y
Sbjct: 192 ---------RKSEADDTESESNVMEEGSENGGLTAESGGLEKFSRLSVLRLLWYHLKSCY 242
Query: 352 SYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIGRTECLIIFSVLL-VVTNFAC 410
S L L +F +G +++Y L +H + ++ I++ + +
Sbjct: 243 SNPLLLYWSLWWAF--ATAGYYQVVNYV-QNLWKH---VEPSDKSSIYNGGVEAASTLLG 296
Query: 411 SPLVDIAGR-KTLNMLSAFLSSGVMIVLAAC--FYWNF--DYWVSYLFTSLFGITYSLGI 465
+ AG K L V L A F F + WV Y+ LF +Y I
Sbjct: 297 AVAAFAAGYLKVRWNRWGELLLAVFSALQAGLLFLMGFTRNIWVCYVGYVLFRASYMFLI 356
Query: 466 GI----IPTTLLSELFP 478
I I L E +
Sbjct: 357 TIATFQIAANLSMERYA 373
>gnl|CDD|226512 COG4025, COG4025, Predicted membrane protein [Function unknown].
Length = 284
Score = 31.0 bits (70), Expect = 1.6
Identities = 25/121 (20%), Positives = 47/121 (38%), Gaps = 6/121 (4%)
Query: 397 IIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSL 456
+ F + LV L+ + + L ++ AF+ ++I +W+ Y
Sbjct: 102 LSFLLFLVFVILEEIVLISMLLWEPLALILAFVLEFLLIRYTRVSNSEDIHWLRYYRFFY 161
Query: 457 FGITYSLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYM 516
+GI ++ +L+ +FP + I IA A+A+F + FG Y
Sbjct: 162 YGIG-TVTFLAFLGYVLARVFPLELLPYLTYIGLIALAVAAFRY-----YFRHKFGRDYT 215
Query: 517 F 517
F
Sbjct: 216 F 216
>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional.
Length = 390
Score = 31.0 bits (71), Expect = 1.8
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 11/63 (17%)
Query: 161 WVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLS 220
WVVA M L P + R+ L+ ++F+ S +L+ A W FT L+S
Sbjct: 55 WVVALMSL-------PLMLLTSNVERRKLLIGLFVLFIASHVLSALA----WNFTVLLIS 103
Query: 221 GIG 223
IG
Sbjct: 104 RIG 106
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 31.2 bits (71), Expect = 1.8
Identities = 17/96 (17%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 448 WVSYLFTSLFGITYSLG-IGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYK- 505
+ L LF +T+ L +G I TL +LF ++++A ++ + L + + +
Sbjct: 785 IIGLLSAILFILTFLLYLLGFIANTLGLDLFQALLQTTAFTVLVLIQLLLTLAVRSRGRP 844
Query: 506 IVQINFGL-YYMFAFYAICSGINVLFTFFFIFETKG 540
+ Y++ + + +L F K
Sbjct: 845 FLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNLKI 880
>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional.
Length = 408
Score = 30.7 bits (69), Expect = 2.3
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 6/143 (4%)
Query: 171 ILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTV 230
I SP G + D+ GRK LL ++L +L AQ+ + R L G+ G
Sbjct: 69 IASPFWGG-LADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNA 127
Query: 231 VPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFITFM 290
+ ++ + L T+ TG + G +L L G L + + V F+ F+
Sbjct: 128 NALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFL 187
Query: 291 FIPETPYFHIIKDNNQVAAKKSL 313
I++N Q +KK +
Sbjct: 188 VT-----LFCIRENFQPVSKKEM 205
Score = 28.7 bits (64), Expect = 9.1
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 158 KVSWVVATMDLGNI----LSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIF 206
K W + T+ G + L P+ G + D +G + +T+ V L+T+F
Sbjct: 139 KSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLF 191
>gnl|CDD|218836 pfam05977, MFS_3, Transmembrane secretion effector. This is a
family of transport proteins. Members of this family
include a protein responsible for the secretion of the
ferric chelator, enterobactin, and a protein involved in
antibiotic resistance.
Length = 524
Score = 30.4 bits (69), Expect = 2.6
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 159 VSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSS-LLTIFA----QSSYWL 213
V+ V A L L IP+G I D F R+ +L L+ +S LLT+ A S + L
Sbjct: 47 VALVQAAATLPIFLLSIPAGAIADNFDRRKVMLAGQLLMAIASALLTVLAALGLLSPWLL 106
Query: 214 FTSRLLSGIG 223
L GIG
Sbjct: 107 LAFTFLIGIG 116
>gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional.
Length = 471
Score = 30.5 bits (69), Expect = 2.7
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 177 SGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPM 233
SG++ D+ G +N ++F SL + + L +R+L G+G G +VP+
Sbjct: 65 SGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVG---GAMMVPV 118
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 30.4 bits (69), Expect = 2.9
Identities = 29/130 (22%), Positives = 46/130 (35%), Gaps = 8/130 (6%)
Query: 174 PIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTI-FAQSSYWLFTSRLLSGIGKGVGF--TV 230
+P+G ++ K G K ++L L++ + L A S + F L + G+G T
Sbjct: 65 SLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETA 124
Query: 231 VPMYIAEITDKEI---RGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIPLVFFI 287
Y+ + E R L+ F G G IL L I + L
Sbjct: 125 ANPYVTLLGKPESAAFRLNLAQAFNG--LGAILGPLLGSSLILSGVALTMSAAQILAIKG 182
Query: 288 TFMFIPETPY 297
+ PY
Sbjct: 183 ADASSVQFPY 192
>gnl|CDD|178111 PLN02494, PLN02494, adenosylhomocysteinase.
Length = 477
Score = 30.2 bits (68), Expect = 3.7
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 20/71 (28%)
Query: 125 PIFIVGCWLT---------WPSVALYKWQTKEYVLPFELDAEKVSWVVATMDLGNI---- 171
P F++ C T W K++ K YVLP LD EK VA + LG +
Sbjct: 397 PSFVMSCSFTNQVIAQLELWNEKKSGKYEKKVYVLPKHLD-EK----VAALHLGKLGAKL 451
Query: 172 --LSPIPSGYI 180
LS + YI
Sbjct: 452 TKLSKDQADYI 462
>gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport
and metabolism].
Length = 498
Score = 29.9 bits (68), Expect = 3.7
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 172 LSPIPSGYIMDKF-GRKNTLLL-TSLVFLTSSLLTIFAQSSY-WLFTSRLLSGIGKG 225
L+PI G++ D+ G + T++L L+ + +L I + S L+ L +G G
Sbjct: 76 LTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTG 132
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 29.9 bits (68), Expect = 3.9
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 6 LDIEPRSDEITTLVVTWGLWSWKTSKGDHYRR---QIM 40
DI D + L WGL WK G + RR QIM
Sbjct: 91 YDIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIM 128
>gnl|CDD|219145 pfam06703, SPC25, Microsomal signal peptidase 25 kDa subunit
(SPC25). This family consists of several microsomal
signal peptidase 25 kDa subunit proteins. Translocation
of polypeptide chains across the endoplasmic reticulum
(ER) membrane is triggered by signal sequences.
Subsequently, signal recognition particle interacts with
its membrane receptor and the ribosome-bound nascent
chain is targeted to the ER where it is transferred into
a protein-conducting channel. At some point, a second
signal sequence recognition event takes place in the
membrane and translocation of the nascent chain through
the membrane occurs. The signal sequence of most
secretory and membrane proteins is cleaved off at this
stage. Cleavage occurs by the signal peptidase complex
(SPC) as soon as the lumenal domain of the translocating
polypeptide is large enough to expose its cleavage site
to the enzyme. The signal peptidase complex is possibly
also involved in proteolytic events in the ER membrane
other than the processing of the signal sequence, for
example the further digestion of the cleaved signal
peptide or the degradation of membrane proteins.
Mammalian signal peptidase is as a complex of five
different polypeptide chains. This family represents the
25 kDa subunit (SPC25).
Length = 161
Score = 28.8 bits (65), Expect = 4.4
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 487 SIASIAFALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFF 533
+++A A A+F + Y + L A Y + SGI L++ F
Sbjct: 33 GYSAVAIAAAAFYYDYKYPFPESKPVLIACVALYFVLSGILTLWSKF 79
>gnl|CDD|182910 PRK11026, ftsX, cell division ABC transporter subunit FtsX;
Provisional.
Length = 309
Score = 29.6 bits (67), Expect = 4.9
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 30/112 (26%)
Query: 388 GLIGRTEC----LIIFSVLLVVTNFACSPLVDIAGRK-TLN-----------MLSAFLSS 431
GL+GR L++ +V LV+ N S + I R+ T+N +L FL
Sbjct: 176 GLVGRVAAMIGVLMVAAVFLVIGN---SVRLSIFSRRDTINVMKLIGATDGFILRPFLYG 232
Query: 432 GVM---------IVLAACFYWNFDYWVSYLFTSLFGITYSL-GIGIIPTTLL 473
G + ++L+ W V+Y+ +FG + L G+ LL
Sbjct: 233 GALLGFSGALLSLILSEILVWRLSSAVTYV-ADVFGTKFDLNGLSFDECLLL 283
>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 29.4 bits (66), Expect = 5.2
Identities = 26/131 (19%), Positives = 57/131 (43%), Gaps = 21/131 (16%)
Query: 178 GYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIG----KGVGFTVVPM 233
G + D+ GR+ L+ +L+F + T+F S +R + G VG+ V
Sbjct: 72 GPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQE 131
Query: 234 YIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGP--------YIQYQTLNIILGVIPLVF 285
+ ++ ++++ +L + +GP ++ ++ L I+ V+ L+
Sbjct: 132 AFGQTKGIKLMAIITSI--------VLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIA 183
Query: 286 FITFMF-IPET 295
F+ + +PET
Sbjct: 184 FVGLLLAMPET 194
>gnl|CDD|132861 cd07222, Pat_PNPLA4, Patatin-like phospholipase domain containing
protein 4. PNPLA4, also known as GS2 (gene sequence-2),
shows both lipase and transacylation activities. GS2
lipase is expressed in various tissues, predominantly in
muscle and adipocytes tissue. It is also expressed in
keratinocytes and shows retinyl ester hydrolase,
acylglycerol, TG hydrolase, and PLA2 activity. This
family includes patatin-like proteins: GS2 from mammals,
PNPLA4 (Patatin-like phospholipase domain-containing
protein 4), and iPLA2-eta (Calcium-independent
phospholipase A2) from Homo sapiens.
Length = 246
Score = 29.2 bits (66), Expect = 5.4
Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 15/78 (19%)
Query: 339 KNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLI----GRTE 394
K+ LVSN++ R+ LI VL+ S + YA E+ G G T
Sbjct: 113 NLKTRKNYLVSNFTSREDLIKVLLAS--------CYVPVYAGLKPVEYKGQKWIDGGFTN 164
Query: 395 CLIIFSVLLVVTNFACSP 412
L + V +T SP
Sbjct: 165 SLPVLPVGRTIT---VSP 179
>gnl|CDD|129974 TIGR00896, CynX, cyanate transporter. This family of proteins is
involved in active transport of cyanate. The cyanate
transporter in E.Coli is used to transport cyanate into
the cell so it can be metabolized into ammonia and
bicarbonate. This process is used to overcome the
toxicity of environmental cyanate [Transport and binding
proteins, Other].
Length = 355
Score = 29.3 bits (66), Expect = 5.5
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 183 KFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYI 235
+FG + ++ L+ + + +L A + LF L G+G + ++P I
Sbjct: 61 RFGEERSVAA-GLLLIAAGILIRSAPGTALLFAGTALIGVGIAIINVLLPSLI 112
>gnl|CDD|129967 TIGR00889, 2A0110, nucleoside transporter. This family of proteins
transports nucleosides at a high affinity. The transport
mechanism is driven by proton motive force. This family
includes nucleoside permease NupG and xanthosine
permease from E.Coli [Transport and binding proteins,
Nucleosides, purines and pyrimidines].
Length = 418
Score = 29.5 bits (66), Expect = 6.0
Identities = 25/128 (19%), Positives = 46/128 (35%), Gaps = 15/128 (11%)
Query: 179 YIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVV----PMY 234
+ + +FG K +LL+ + + + Y+ + LS I G F ++
Sbjct: 273 FFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVF 332
Query: 235 IAEITDKEIRGTLSTMFT------GHLYGGILFSLCVGPYIQYQTLN-----IILGVIPL 283
+ + IR + +FT G L G IL + V Y T + +
Sbjct: 333 VEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIA 392
Query: 284 VFFITFMF 291
+ + FM
Sbjct: 393 ILAVLFMI 400
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 29.3 bits (66), Expect = 6.3
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 9/149 (6%)
Query: 168 LGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVG 227
+G +S G + DKFG + +L +++ A S L+ + L+ G G+
Sbjct: 49 IGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIA 108
Query: 228 F-TVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSL-----CVGPYIQYQTLNIILGVI 281
+ + + DK RG L++ YG F L V I +G+I
Sbjct: 109 YGIALNTAVKWFPDK--RG-LASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGII 165
Query: 282 PLVFFITFMFIPETPYFHIIKDNNQVAAK 310
L+ + F+ P +IK N +V+ K
Sbjct: 166 FLLVIVLGAFLIGYPPGQLIKTNIEVSVK 194
>gnl|CDD|235151 PRK03699, PRK03699, putative transporter; Provisional.
Length = 394
Score = 29.1 bits (66), Expect = 6.7
Identities = 34/173 (19%), Positives = 75/173 (43%), Gaps = 20/173 (11%)
Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQS-- 209
F L +S ++ G ++S + ++M+ K L+ + + + +F+ S
Sbjct: 37 FNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLA 96
Query: 210 --SYWLFTSRLLSGIGKGVG-FTVVPMYIAEITDKEIRGTLSTMFTGHLY--GGILFSLC 264
S +F ++SGI +G F + +Y + + RG+ +FT + G++F +
Sbjct: 97 LFSIAMFVLGVVSGITMSIGTFLITHVY-----EGKQRGS-RLLFTDSFFSMAGMIFPI- 149
Query: 265 VGPY-----IQYQTLNIILGVIPL-VFFITFMFIPETPYFHIIKDNNQVAAKK 311
+ Y I++ + +G++ + +F +T H K + VA +K
Sbjct: 150 IAAYLLARSIEWYWVYACIGLVYVAIFILTLFSEFPALGKHAPKADKPVAKEK 202
>gnl|CDD|236614 PRK09705, cynX, putative cyanate transporter; Provisional.
Length = 393
Score = 29.0 bits (65), Expect = 7.3
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 178 GYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYI 235
++ + ++ ++ L+ +L+ S L +S LL G+G G+ V+P I
Sbjct: 65 SWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVI 122
>gnl|CDD|115789 pfam07158, MatC_N, Dicarboxylate carrier protein MatC N-terminus.
This family represents the N-terminal region of the
bacterial dicarboxylate carrier protein MatC. The MatC
protein is an integral membrane protein that could
function as a malonate carrier.
Length = 149
Score = 28.2 bits (63), Expect = 7.7
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 416 IAGRKTLNM-LSAFLSSGVMIVLAACFYWN--FDYWVSYLFTSLFGITYSLGIGIIPTTL 472
IA R+ +NM AF ++ ++ + + LF +L +TY I T+
Sbjct: 17 IATRRPINMGALAFAAAFLIGTVLMGLDPKEVLAGFPGDLFLTLVAVTYLFAIARTNGTI 76
Query: 473 --LSELFPTNVKSSAASIASIAFALASFL 499
L V+ +I + F LA+ L
Sbjct: 77 DWLVHHAVRAVRGRVGAIPWVMFLLAALL 105
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.419
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 29,165,095
Number of extensions: 2919639
Number of successful extensions: 4808
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4672
Number of HSP's successfully gapped: 336
Length of query: 567
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 465
Effective length of database: 6,413,494
Effective search space: 2982274710
Effective search space used: 2982274710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (27.6 bits)