RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3209
(567 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.0 bits (134), Expect = 2e-08
Identities = 31/242 (12%), Positives = 69/242 (28%), Gaps = 82/242 (33%)
Query: 284 VFFITF---------MFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTT 334
+F++ + + + + I + + S NI + I
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH---------SSNIKLRIHSI---- 230
Query: 335 NENMKNKSGYRELVSNYSYRKALII------------------VLVTSFLQRLSGVSTIL 376
++ R L+ + Y L++ +L+T+ R V+ L
Sbjct: 231 ------QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT---RFKQVTDFL 281
Query: 377 SYASTT---LPEHHGLIGRTECLIIFSVLLVVTNF-----AC--SPLVDIAGRKTLNMLS 426
S A+TT L H + E + L +P L++++
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-------LSIIA 334
Query: 427 AFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSEL------FPTN 480
+ G+ W D W ++ + ++ ++ FP +
Sbjct: 335 ESIRDGLAT-------W--DNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 481 VK 482
Sbjct: 385 AH 386
Score = 41.0 bits (95), Expect = 0.001
Identities = 65/523 (12%), Positives = 133/523 (25%), Gaps = 173/523 (33%)
Query: 100 SKGDHYRRQIMGYTKQAIAAFSASLPIFI---VGC---WLTWPSVALYKWQTKEYVLPFE 153
+K + R Q +QA+ + + I +G W+ YK Q K + F
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK---MDF- 182
Query: 154 LDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSS-----------L 202
K+ W ++L N SP ++ K + TS +S+ L
Sbjct: 183 ----KIFW----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 203 LTIFAQSSY----------W--------------LFTSRLLSGIGKGVGFTVVPMYIAEI 238
+ Y L T+R K V + I
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR-----FKQVTDFLSAATTTHI 289
Query: 239 TDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTL-NIILGVIPLVFFITFMFIPETP- 296
+ TL+ L + + Q L +L P I I +
Sbjct: 290 SLDHHSMTLT-----PDEVKSLLLKYLD--CRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 297 ----YFHIIKDNNQVAAKKSLE---------WFKG-----KSQNITEELDEIV---LTTN 335
+ H+ D + SL F S +I L ++ + +
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS 402
Query: 336 ENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHH-GLIGRTE 394
+ +V N ++ +L+ + + L H ++
Sbjct: 403 DV--------MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH-- 452
Query: 395 CLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYL-- 452
+++ + P + Y+ S++
Sbjct: 453 ----YNIPKTFDSDDLIPP-----------------------------YLDQYFYSHIGH 479
Query: 453 -------------FTSLF-------------GITYSLGIGIIPTTLLSELFPTNVKSSAA 486
F +F ++ I+ T + + + +
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 487 SIASIAFALASFLIN--------KFYKIVQINF-----GLYYM 516
+ A+ FL K+ +++I ++
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
major facilitator superfamily, secondary active membrane
transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Length = 451
Score = 51.6 bits (124), Expect = 4e-07
Identities = 57/403 (14%), Positives = 128/403 (31%), Gaps = 40/403 (9%)
Query: 151 PFELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNT----LLLTSLVFLTSSLLTIF 206
+ + ++ + + S G + D+ + L+L + V L +
Sbjct: 56 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA 115
Query: 207 AQSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMF-TGHLYGGILFSLCV 265
S +F L G +G+G+ + ++ RG + +++ H GG + L
Sbjct: 116 TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175
Query: 266 GPYIQY----QTLNIILGVIPLVF-FITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKS 320
+ + + ++ F + +TP + + ++ +
Sbjct: 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPP----IEEYKNDYPDDYN 231
Query: 321 QNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVT---SFLQRLSGVSTILS 377
+ +EL + + NK + ++N L ++ ++L+ + + S
Sbjct: 232 EKAEQELTAKQIFMQYVLPNKLLWYIAIANVFV-YLLRYGILDWSPTYLKEVKHFALDKS 290
Query: 378 YASTTLPEHHGLIGRTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVL 437
+ L E+ G+ G ++ + S V R + L + IV
Sbjct: 291 SWAYFLYEYAGIPG----TLLCGWM--------SDKVFRGNRGATGVFFMTLVTIATIVY 338
Query: 438 AACFYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASI----ASIAF 493
N + + F I G ++ EL P +AA +
Sbjct: 339 WMNPAGNPTVDMICMIVIGFLIY---GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 395
Query: 494 ALASFLINKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIF 536
++A+ I + V FG F S + V+ +
Sbjct: 396 SVAASAIVGY--TVD-FFGWDGGFMVMIGGSILAVILLIVVMI 435
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+
symport, sugar transport, transmembrane, formylation;
2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A*
1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Length = 417
Score = 47.2 bits (112), Expect = 8e-06
Identities = 24/121 (19%), Positives = 45/121 (37%), Gaps = 5/121 (4%)
Query: 177 SGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWLFTSRLLSGIGKGVGFTVVPMYIA 236
+ I+++ G KN LLL + + + FA S+ + + L YI
Sbjct: 279 APLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338
Query: 237 EITDKEIRGTLSTMFTGHLYG--GILFSLCVGP---YIQYQTLNIILGVIPLVFFITFMF 291
+ T+ + I S+ G I +Q ++LG++ L F + +F
Sbjct: 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVF 398
Query: 292 I 292
Sbjct: 399 T 399
Score = 46.5 bits (110), Expect = 2e-05
Identities = 47/398 (11%), Positives = 97/398 (24%), Gaps = 45/398 (11%)
Query: 154 LDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSYWL 213
+ + A + L ++L G + DK G + LL L L
Sbjct: 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLL 99
Query: 214 ----FTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGI---LFSLCVG 266
++ GI G F + +K R + ++G + L + VG
Sbjct: 100 QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159
Query: 267 PYIQYQTLNII--LGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNIT 324
+ L+ + F N A +
Sbjct: 160 IMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSL--------- 210
Query: 325 EELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYA-STTL 383
+ + + K + L + V T+
Sbjct: 211 --------------------KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSF 250
Query: 384 PEHHGLIGRTE-CLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFY 442
R + LL + +PL+ I N L L+ +M V
Sbjct: 251 FATGEQGTRVFGYVTTMGELLNASIMFFAPLI-INRIGGKNAL--LLAGTIMSVRIIGSS 307
Query: 443 WNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSA-ASIASIAFALASFLIN 501
+ + +L + + ++ F ++ LA ++
Sbjct: 308 FATSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMS 366
Query: 502 KFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETK 539
+ + G + + + L + F +
Sbjct: 367 VLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug
transporter; 3.50A {Escherichia coli}
Length = 375
Score = 46.1 bits (110), Expect = 2e-05
Identities = 60/364 (16%), Positives = 113/364 (31%), Gaps = 67/364 (18%)
Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSY 211
+ V V+ L +S + G I D+ GR+ +L+ +F+ ++L+ + S
Sbjct: 30 LNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT 89
Query: 212 WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQY 271
L + + G+G GVG V+ D R L L GIL S + P I
Sbjct: 90 VLIAASAMQGMGTGVG-GVMAR--TLPRDLYERTQLRHAN-SLLNMGILVSPLLAPLIGG 145
Query: 272 QTLNI-----------ILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKS 320
+ +L V F ++PET V A ++
Sbjct: 146 LLDTMWNWRACYLFLLVLCA--GVTFSMARWMPET---------RPVDAPRTRLL----- 189
Query: 321 QNITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYAS 380
+ Y+ L N +L+ L+G++ + +
Sbjct: 190 ---------------------TSYKTLFGN---SGFNCYLLMLIGG--LAGIAAFEACSG 223
Query: 381 TTLPEHHGLIGRTECLIIF---SVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVL 437
+ GL I+F + + L +G+++ +
Sbjct: 224 VLMGAVLGL-SSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWI 282
Query: 438 AACFYWNFDYWVSYLFTSLFGITYSLGIGIIP--TTLLSELFPTNVKSSAASIASIAFAL 495
F + L + G+ + P T+ E FP ++ A + +
Sbjct: 283 PDWFGVMNVWT---LLVPAALFFFGAGM-LFPLATSGAMEPFPFLAGTAGALVGGLQNIG 338
Query: 496 ASFL 499
+ L
Sbjct: 339 SGVL 342
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 7e-05
Identities = 39/248 (15%), Positives = 64/248 (25%), Gaps = 97/248 (39%)
Query: 316 FKGKSQNITEE-LDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLS---- 370
F G Q T++ +E+ R+L Y +I L L
Sbjct: 160 FGG--QGNTDDYFEEL--------------RDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 371 --------GVSTI--------------LSYASTTLPEHHGLIGRTECLIIFSVLLVVTNF 408
G++ + L + P LIG + L + V + F
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP----LIGVIQ-LAHYVVTAKLLGF 258
Query: 409 ACSPLVDIAGRKTLNMLSAFLSSGVMIVLAAC---------FYWNFDYWVSYLF------ 453
L L +V A F+ + ++ LF
Sbjct: 259 TPGELRSY--------LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRC 310
Query: 454 ------TSL------------FGI-TYSLGI-GIIPTTLLSELFPTNVKSSAASIASIAF 493
TSL G+ + L I + + + TN A I+
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS- 369
Query: 494 ALASFLIN 501
L+N
Sbjct: 370 -----LVN 372
Score = 33.5 bits (76), Expect = 0.24
Identities = 42/217 (19%), Positives = 67/217 (30%), Gaps = 74/217 (34%)
Query: 192 LTSLVF------LTSSLLTIFAQ-----SSYWLFTSRLLSGIGKGVGFTVVPMYIAEITD 240
TS F L+ T F Q F L K G A
Sbjct: 1714 STSYTFRSEKGLLS---ATQFTQPALTLMEKAAF--EDL----KSKGLIPADATFA---- 1760
Query: 241 KEIRGTLSTMFTGHLYGGILFSLCVGPYIQYQTLNIILGVIP------LVFF--ITFMFI 292
GH SL G +Y L + V+ +VF+ +T
Sbjct: 1761 ------------GH-------SL--G---EYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 293 PE------TPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIVLTTNENMKNK----S 342
+ Y I + +VAA S E + + + + +V N N++N+ +
Sbjct: 1797 VPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA 1856
Query: 343 GYR-------ELVSNYSYRKALIIVLVTSF-LQRLSG 371
G +++ +K II L S L+ + G
Sbjct: 1857 GDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei
transport protein; HET: BNG; 3.14A {Escherichia coli}
PDB: 3o7p_A*
Length = 438
Score = 39.1 bits (91), Expect = 0.004
Identities = 19/123 (15%), Positives = 38/123 (30%), Gaps = 11/123 (8%)
Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFA--QS 209
F L + + + G + PIP+G +M K K ++ ++ + L A
Sbjct: 56 FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM 115
Query: 210 SYWLF-TSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLC--VG 266
+Y LF + G G T ++ + + + S +
Sbjct: 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNL------AQTFNSFGAIIA 169
Query: 267 PYI 269
Sbjct: 170 VVF 172
>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl
reductase, ketoacyl synthase, ketoacyl reductase; HET:
FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*
Length = 2060
Score = 34.2 bits (78), Expect = 0.15
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 8/99 (8%)
Query: 288 TFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIV---LTTNENMKNKSGY 344
TF E P I +A +S EWFK Q+ E L + + L + KNK+ Y
Sbjct: 1427 TFQRKDEVPMQLHIATPQDLAVLRSKEWFKLDDQHDIELLGQTLVFRLQSLVRFKNKNVY 1486
Query: 345 REL-----VSNYSYRKALIIVLVTSFLQRLSGVSTILSY 378
+ V K +I V + S + ++ Y
Sbjct: 1487 SSVQTIGQVLLELPTKEIIQVASVDYEAGESHGNPVIDY 1525
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.22
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 114 KQAIAAFSASLPIFIVGCWLTWPSVAL 140
KQA+ ASL ++ + P++A+
Sbjct: 19 KQALKKLQASLKLYADD---SAPALAI 42
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron,
DIIRON, carboxylate, oxidase, ligand, C monooxygenase;
HET: MYR; 1.90A {Mycobacterium tuberculosis}
Length = 323
Score = 31.6 bits (72), Expect = 0.71
Identities = 4/52 (7%), Positives = 10/52 (19%), Gaps = 14/52 (26%)
Query: 516 MFAFYAICSGINVLFTFFFIFETKGKSFQQIQNILKKK---TATTQSNEYIM 564
+ I G+ + I ++ + I
Sbjct: 168 SVTYNHIVEGM-----LAL------TGYYAWHKICVERAILPGMQELVRRIG 208
>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis,
malonyl/palmitoyl transferase, phosphopantetheine,
transferase; HET: GVL FMN; 3.10A {Saccharomyces
cerevisiae} PDB: 2vkz_G* 3hmj_G*
Length = 2051
Score = 31.2 bits (70), Expect = 1.1
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 20/104 (19%)
Query: 285 FFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIV--LTTNENMKNKS 342
F TF E Y IK + +A +S EWF+ ++ + T KN +
Sbjct: 1419 FENTFQKTVEPVYQMHIKTSKDIAVLRSKEWFQLDDEDFDLLNKTLTFETETEVTFKNAN 1478
Query: 343 GYREL-----VSNYSYRKALIIV-------------LVTSFLQR 368
+ + + K + + V FL+R
Sbjct: 1479 IFSSVKCFGPIKVELPTKETVEIGIVDYEAGASHGNPVVDFLKR 1522
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane,
phospho signal sequence, membrane, ribosome, transport;
8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Length = 490
Score = 30.8 bits (69), Expect = 1.3
Identities = 22/149 (14%), Positives = 45/149 (30%)
Query: 402 LLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSYLFTSLFGITY 461
LL + R+ L+ + ++L F + + + I +
Sbjct: 96 LLAGLKVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAGYFGDDLSVVQIGLINF 155
Query: 462 SLGIGIIPTTLLSELFPTNVKSSAASIASIAFALASFLINKFYKIVQINFGLYYMFAFYA 521
L I TTLL+E+ S+ ++ +A+ L+ + + QI G
Sbjct: 156 QLVGAGIFTTLLAEVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQG 215
Query: 522 ICSGINVLFTFFFIFETKGKSFQQIQNIL 550
+ G ++ L
Sbjct: 216 ALINLIQGLRSKHKTFIGGIISAFNRDYL 244
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen
activation, iron coupled radical, immune EVAS
replication, oxidoreductase; 1.70A {Chlamydia
trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A
Length = 346
Score = 29.6 bits (67), Expect = 2.9
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 15/52 (28%)
Query: 516 MFAFYAICSGINVLFTFFFIFETKGKSFQQIQNILKKK---TATTQSNEYIM 564
+ +Y I GI FF+ F I + ++ + +YI+
Sbjct: 185 LVGYYIIMEGI-----FFY------SGFVMILS-FHRQNKMIGIGEQYQYIL 224
>2hq9_A MLL6688 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-2,
flavoprotein; HET: FAD; 1.95A {Mesorhizobium loti} SCOP:
b.45.1.1
Length = 149
Score = 28.7 bits (64), Expect = 3.4
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 31/86 (36%)
Query: 233 MYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVG--PYIQYQTLNIILGVIPLVFFITFM 290
M + ++ E L+ G L + PY V+PL +
Sbjct: 2 MLVRTLSALECTKVLTANRVGRL------ACAKDGQPY-----------VVPLYYA---- 40
Query: 291 FIPETPYFH--------IIKDNNQVA 308
+ Y ++ N +V+
Sbjct: 41 YSDAHLYAFSMPGKKIEWMRANPRVS 66
>3u5w_A Putative uncharacterized protein; ssgcid, seattle structural
genomics center for infectious DI FMN-binding protein;
2.05A {Brucella melitensis biovar abortus} PDB: 3u0i_A
Length = 148
Score = 28.2 bits (63), Expect = 4.5
Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 31/87 (35%)
Query: 232 PMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVG--PYIQYQTLNIILGVIPLVFFITF 289
M I E++D +IR + G L V P ++P+ F
Sbjct: 4 SMLITEMSDYDIREMIQHKHVGRL------GYVVDDRPI-----------IVPMTFR--- 43
Query: 290 MFIPETPYFH--------IIKDNNQVA 308
F + Y ++ N+ +
Sbjct: 44 -FSGGSFYSFTTDGQKTNAMRKNDAIC 69
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY,
membrane protein, protein channels, protein transport;
3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1
PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Length = 436
Score = 28.7 bits (65), Expect = 5.9
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 10/40 (25%)
Query: 36 RRQIMGYTK---------QAIA-AFSGMYGISSPSFYLPI 65
R G K +A+ +G +GI +P +
Sbjct: 104 RALFQGCQKLLSIIMCFVEAVLFVGAGAFGILTPLLAFLV 143
>1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta sheet,
sugar binding protein, signaling protein; HET: CBS;
2.20A {Vibrio cholerae} PDB: 1zty_A*
Length = 529
Score = 28.5 bits (64), Expect = 7.9
Identities = 5/40 (12%), Positives = 15/40 (37%), Gaps = 9/40 (22%)
Query: 65 IQDMKSQVGIDIEPRSEYDEITTLVVTWGLWSWKTSKGDH 104
+ +VGI + R+ + +++ +G +
Sbjct: 372 AVEQLQEVGIKAKART---------PEFAVYNQAMLEGTY 402
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.419
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,629,827
Number of extensions: 515329
Number of successful extensions: 1041
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1026
Number of HSP's successfully gapped: 35
Length of query: 567
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 468
Effective length of database: 3,937,614
Effective search space: 1842803352
Effective search space used: 1842803352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.1 bits)