RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3209
         (567 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 81.7 bits (200), Expect = 4e-17
 Identities = 51/411 (12%), Positives = 116/411 (28%), Gaps = 30/411 (7%)

Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTL----LLTSLVFLTSSLLTIFA 207
                  + + ++ + +    S    G + D+   +  L    +L + V L    +    
Sbjct: 54  QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT 113

Query: 208 QSSYWLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGG-----ILFS 262
            S   +F    L G  +G+G+      +     ++ RG + +++      G     +LF 
Sbjct: 114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 173

Query: 263 LCVGPYIQYQTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQN 322
           L +  +  +     +     ++  +    +                              
Sbjct: 174 LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC------------------GLPP 215

Query: 323 ITEELDEIVLTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTT 382
           I E  ++     NE  + +   +++   Y     L+  +  + +        IL ++ T 
Sbjct: 216 IEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTY 275

Query: 383 LPEHHGLIGRTECLI--IFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAAC 440
           L E              ++    +     C  + D   R        F  + V I     
Sbjct: 276 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVY 335

Query: 441 FYWNFDYWVSYLFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIAS-IAFALASFL 499
           +          +   +       G  ++      EL P     +AA       +   S  
Sbjct: 336 WMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVA 395

Query: 500 INKFYKIVQINFGLYYMFAFYAICSGINVLFTFFFIFETKGKSFQQIQNIL 550
            +         FG    F      S + V+     +   K +  Q +Q ++
Sbjct: 396 ASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELV 446


>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 64.8 bits (156), Expect = 1e-11
 Identities = 34/389 (8%), Positives = 92/389 (23%), Gaps = 23/389 (5%)

Query: 152 FELDAEKVSWVVATMDLGNILSPIPSGYIMDKFGRKNTLLLTSLVFLTSSLLTIFAQSSY 211
             +       + A + L ++L     G + DK G +  LL      L             
Sbjct: 38  NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP 97

Query: 212 WLFTSRLLSGIGKGVGFTVVPMYIAEITDKEIRGTLSTMFTGHLYGGILFSLCVGPYIQY 271
            L  + L+  I  G+         A                       + +       + 
Sbjct: 98  LLQYNILVGSIVGGIYLGFCFNAGA---------------------PAVEAFIEKVSRRS 136

Query: 272 QTLNIILGVIPLVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKSQNITEELDEIV 331
                   +   V +     I    +    +    + +  +L          T+      
Sbjct: 137 NFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSAT 196

Query: 332 LTTNENMKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLIG 391
           +       + +   +L      +  L  + +       +       +A+           
Sbjct: 197 VANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQ 256

Query: 392 RTECLIIFSVLLVVTNFACSPLVDIAGRKTLNMLSAFLSSGVMIVLAACFYWNFDYWVSY 451
            T      + +  + N +      +   +     +  L+  +M V      +        
Sbjct: 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV 316

Query: 452 LFTSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIA-SIAFALASFLINKFYKIVQIN 510
           +  +L        +       ++  F     ++   +       LA   ++     +  +
Sbjct: 317 ILKTLHMFEVPFLLVGCF-KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES 375

Query: 511 FGLYYMFAFYAICSGINVLFTFFFIFETK 539
            G    +    + +    L + F +    
Sbjct: 376 IGFQGAYLVLGLVALGFTLISVFTLSGPG 404


>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded
           RNA-dependent protein kinase activator A {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 73

 Score = 27.7 bits (61), Expect = 0.74
 Identities = 8/38 (21%), Positives = 13/38 (34%)

Query: 283 LVFFITFMFIPETPYFHIIKDNNQVAAKKSLEWFKGKS 320
             F +T   I  T      K     AA+ ++   K  +
Sbjct: 35  FTFRVTVGDITCTGEGTSKKLAKHRAAEAAINILKANA 72


>d2qamn1 d.188.1.1 (N:1-120) Prokaryotic ribosomal protein L17
           {Escherichia coli [TaxId: 562]}
          Length = 120

 Score = 27.5 bits (61), Expect = 1.8
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 338 MKNKSGYRELVSNYSYRKALIIVLVTSFLQRLSGVSTILSYASTTLPEHHGLI 390
           M+++   R+L  N S+R+A+   +  S ++    + T L  A         LI
Sbjct: 1   MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRH-EIIKTTLPKAKELRRVVEPLI 52


>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
           {Thermus thermophilus [TaxId: 274]}
          Length = 310

 Score = 27.9 bits (61), Expect = 3.7
 Identities = 12/65 (18%), Positives = 17/65 (26%), Gaps = 2/65 (3%)

Query: 454 TSLFGITYSLGIGIIPTTLLSELFPTNVKS--SAASIASIAFALASFLINKFYKIVQINF 511
           T   G T      I   T   E       +   AA    +   L S  I         +F
Sbjct: 28  TPFLGKTLKAPFLIGAMTGGEENGERINLALAEAAEALGVGMMLGSGRILLERPEALRSF 87

Query: 512 GLYYM 516
            +  +
Sbjct: 88  RVRKV 92


>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
           {Bacillus subtilis [TaxId: 1423]}
          Length = 329

 Score = 26.3 bits (57), Expect = 9.5
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 454 TSLFGITYSLGIGIIPTTLLSELFPTNVKSSAASIAS---IAFALASFLINKFYKIVQIN 510
           T +  ++ S  I I   T         +  S A  AS   I  A+ S +        +++
Sbjct: 27  TKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMSALKDPSERLS 86

Query: 511 FGLYYMFA 518
           + +     
Sbjct: 87  YEIVRKEN 94


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0626    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,110,042
Number of extensions: 98013
Number of successful extensions: 319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 9
Length of query: 567
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 477
Effective length of database: 1,171,896
Effective search space: 558994392
Effective search space used: 558994392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.2 bits)