BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3210
(272 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CRH|A Chain A, Solution Structure Of The Sh2 Domain Of Human Proto-
Oncogene Protein Vav1
pdb|2ROR|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Tyrosine-Phosphorylated Peptide From Slp76
Length = 138
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 9/113 (7%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
++LS +LW+ G M R A S+L +DGT+L+R R + +A+S+K + +VKH+
Sbjct: 21 QDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAE-----FAISIKYNVEVKHI 75
Query: 143 KVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
K+ M Y +++ + FR + EL+ Y++NSL + F L+ LQ PF++
Sbjct: 76 KI----MTAEGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 124
>pdb|2LCT|A Chain A, Solution Structure Of The Vav1 Sh2 Domain Complexed With A
Syk-Derived Doubly Phosphorylated Peptide
Length = 107
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 67/113 (59%), Gaps = 9/113 (7%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
++LS +LW+ G M R A S+L +DGT+L+R R + +A+S+K + +VKH+
Sbjct: 4 QDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRVKDAAE-----FAISIKYNVEVKHI 58
Query: 143 KVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
K+ M Y +++ + FR + EL+ Y++NSL + F L+ LQ PF++
Sbjct: 59 KI----MTAEGLYRITEKKAFRGLTELVEFYQQNSLKDCFKSLDTTLQFPFKE 107
>pdb|2LNW|A Chain A, Identification And Structural Basis For A Novel
Interaction Between Vav2 And Arap3
pdb|2LNX|A Chain A, Solution Structure Of Vav2 Sh2 Domain
Length = 122
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 68/111 (61%), Gaps = 9/111 (8%)
Query: 84 NLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMK 143
+ + Y WF G M R++ +LL+ A GTYL+R RP +A+S+K +++VKH+K
Sbjct: 18 DYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAER-----FAISIKFNDEVKHIK 72
Query: 144 VYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFR 194
V EK+ +++++ F S++EL+ Y+ +SL E+F L+ L+ P++
Sbjct: 73 VVEKD----NWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYK 119
>pdb|2DLZ|A Chain A, Solution Structure Of The Sh2 Domain Of Human Protein
Vav-2
Length = 118
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 67/110 (60%), Gaps = 9/110 (8%)
Query: 84 NLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMK 143
+ + Y WF G M R++ +LL+ A GTYL+R RP +A+S+K +++VKH+K
Sbjct: 12 DYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERPAEAER-----FAISIKFNDEVKHIK 66
Query: 144 VYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPF 193
V EK+ +++++ F S++EL+ Y+ +SL E+F L+ L+ P+
Sbjct: 67 VVEKD----NWIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPY 112
>pdb|1GRI|A Chain A, Grb2
pdb|1GRI|B Chain B, Grb2
Length = 217
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 11/137 (8%)
Query: 90 WFVGEMGREKATSLLERE-ADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148
WF G++ R KA +L ++ DG +L+R P ++LS+K V+H KV
Sbjct: 60 WFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGD-----FSLSVKFGNDVQHFKVLR-- 112
Query: 149 MDGVPQYFLSQSRYFRSIVELICCYERNSLIENF-IGLNVRLQLPFRQIIAVAEFDFCPT 207
DG +YFL + F S+ EL+ + S+ N I L Q+P + A FDF P
Sbjct: 113 -DGAGKYFLWVVK-FNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQ 170
Query: 208 EANQLPLKQGCQVIVLS 224
E +L ++G + V+
Sbjct: 171 EDGELGFRRGDFIHVMD 187
>pdb|1OO3|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase
pdb|1OO4|A Chain A, P395s Mutant Of The P85 Regulatory Subunit Of The N-
Terminal Src Homology 2 Domain Of Pi3-Kinase Complexed
To A Peptide Derived From Pdgfr
Length = 111
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 85 LSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKV 144
L + W+ G++ RE+ L ADGT+L+R H + Y L+L+ K +K+
Sbjct: 8 LQDAEWYWGDISREEVNEKLRDTADGTFLVR-DASTKMHGD---YTLTLRKGGNNKSIKI 63
Query: 145 YEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ ++ +Y S S F S+VELI Y SL + L+V+L P
Sbjct: 64 FHRD----GKYGFSDSLTFNSVVELINHYRNESLAQYNPKLDVKLLYP 107
>pdb|1H9O|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit:
C-Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Crystal Structure
At 1.79 A
pdb|1PIC|A Chain A, Phosphatidylinositol 3-Kinase, P85-Alpha Subunit: C-
Terminal Sh2 Domain Complexed With A Tyr751
Phosphopeptide From The Pdgf Receptor, Nmr, Minimized
Mean Structure
Length = 112
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 86 SEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVY 145
E W VG R KA +LL + DGT+L+R + + YA S+ D +VKH V
Sbjct: 8 DEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSK------QGCYACSVVVDGEVKHC-VI 60
Query: 146 EKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
K G F + S+ EL+ Y+ SL+++ LNV L P
Sbjct: 61 NKTATGYG--FAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYP 105
>pdb|1QAD|A Chain A, Crystal Structure Of The C-Terminal Sh2 Domain Of The P85
Alpha Regulatory Subunit Of Phosphoinositide 3-Kinase:
An Sh2 Domain Mimicking Its Own Substrate
Length = 111
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 86 SEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVY 145
E W VG R KA +LL + DGT+L+R + + YA S+ D +VKH V
Sbjct: 7 DEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSK------QGCYACSVVVDGEVKHC-VI 59
Query: 146 EKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
K G F + S+ EL+ Y+ SL+++ LNV L P
Sbjct: 60 NKTATGYG--FAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYP 104
>pdb|1BFI|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, 30 Structures
pdb|1BFJ|A Chain A, Solution Structure Of The C-Terminal Sh2 Domain Of The
P85alpha Regulatory Subunit Of Phosphoinositide
3-Kinase, Nmr, Minimized Average Structure
Length = 112
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 86 SEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVY 145
E W VG R KA +LL + DGT+L+R + + YA S+ D +VKH V
Sbjct: 8 DEKTWNVGSSNRNKAENLLRGKRDGTFLVRESSK------QGCYACSVVVDGEVKHC-VI 60
Query: 146 EKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
K G F + S+ EL+ Y+ SL+++ LNV L P
Sbjct: 61 NKTATGYG--FAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYP 105
>pdb|1FU5|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase Complexed To A Doubly Phosphorylated Peptide
Derived From Polyomavirus Middle T Antigen
pdb|1FU6|A Chain A, Nmr Structure Of The N-Sh2 Domain Of The P85 Subunit Of
Pi3- Kinase
Length = 111
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 85 LSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKV 144
L + W+ G++ RE+ L ADGT+L+R H + Y L+L+ K +K+
Sbjct: 8 LQDAEWYWGDISREEVNEKLRDTADGTFLVR-DASTKMHGD---YTLTLRKGGNNKSIKI 63
Query: 145 YEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ + DG +Y S F S+VELI Y SL + L+V+L P
Sbjct: 64 FHR--DG--KYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYP 107
>pdb|2PNA|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
pdb|2PNB|A Chain A, Structure Of An Sh2 Domain Of The P85 Alpha Subunit Of
Phosphatidylinositol-3-Oh Kinase
Length = 104
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 85 LSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKV 144
L + W+ G++ RE+ L ADGT+L+R H + Y L+L+ K +K+
Sbjct: 1 LQDAEWYWGDISREEVNEKLRDTADGTFLVR-DASTKMHGD---YTLTLRKGGNNKLIKI 56
Query: 145 YEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ + DG +Y S F S+VELI Y SL + L+V+L P
Sbjct: 57 FHR--DG--KYGFSDPLTFNSVVELINHYRNESLAQYNPKLDVKLLYP 100
>pdb|2IUG|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain
pdb|2IUH|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With C-Kit Phosphotyrosyl Peptide
pdb|2IUI|A Chain A, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
pdb|2IUI|B Chain B, Crystal Structure Of The Pi3-Kinase P85 N-Terminal Sh2
Domain In Complex With Pdgfr Phosphotyrosyl Peptide
Length = 120
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 90 WFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEM 149
W+ G++ RE+ L ADGT+L+R H + Y L+L+ K +K++ +
Sbjct: 13 WYWGDISREEVNEKLRDTADGTFLVR-DASTKMHGD---YTLTLRKGGNNKLIKIFHR-- 66
Query: 150 DGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP---FRQIIAVAE 201
DG +Y S F S+VELI Y SL + L+V+L P ++Q V E
Sbjct: 67 DG--KYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVVKE 119
>pdb|2EOB|A Chain A, Solution Structure Of The Second Sh2 Domain From Rat Plc
Gamma-2
Length = 124
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 16/104 (15%)
Query: 90 WFVGEMGREKATSLLER-EADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148
W+ + R +A +L R DG +L+R R YA++ + KVKH ++
Sbjct: 21 WYYDRLSRGEAEDMLMRIPRDGAFLIRKRE------GTDSYAITFRARGKVKHCRI---N 71
Query: 149 MDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
DG + L S YF S+VEL+ YE+++L +RL+ P
Sbjct: 72 RDGR-HFVLGTSAYFESLVELVSYYEKHALYR-----KMRLRYP 109
>pdb|3HHM|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha And The Drug Wortmannin
pdb|3HIZ|B Chain B, Crystal Structure Of P110alpha H1047r Mutant In Complex
With Nish2 Of P85alpha
Length = 373
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 11/115 (9%)
Query: 90 WFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEM 149
W+ G++ RE+ L ADGT+L+R H + Y L+L+ K +K++ +
Sbjct: 12 WYWGDISREEVNEKLRDTADGTFLVR-DASTKMHGD---YTLTLRKGGNNKLIKIFHR-- 65
Query: 150 DGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP---FRQIIAVAE 201
DG +Y S F S+VELI Y SL + L+V+L P ++Q V E
Sbjct: 66 DG--KYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSKYQQDQVVKE 118
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 71 GNEWTAKSWA---DHENL---SEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHP 124
GNE T ++ D E+L E W VG R KA +LL + DGT+L+R
Sbjct: 278 GNENTEDQYSLVEDDEDLPHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVR------ESS 331
Query: 125 NETIYALSLKTDEKVKH 141
+ YA S+ D +VKH
Sbjct: 332 KQGCYACSVVVDGEVKH 348
>pdb|2Y3A|B Chain B, Crystal Structure Of P110beta In Complex With Icsh2 Of
P85beta And The Drug Gdc-0941
Length = 302
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 87 EYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYE 146
E W+VG++ R +A +L + DGT+L+R Q YA S+ D KH +Y
Sbjct: 193 ERTWYVGKINRTQAEEMLSGKRDGTFLIRESSQ------RGCYACSVVVDGDTKHCVIY- 245
Query: 147 KEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFR 194
+ G F + S+ EL+ Y+ SL+++ L V L P R
Sbjct: 246 RTATGFG--FAEPYNLYGSLKELVLHYQHASLVQHNDALTVTLAHPVR 291
>pdb|2RD0|B Chain B, Structure Of A Human P110alpha/p85alpha Complex
pdb|4A55|B Chain B, Crystal Structure Of P110alpha In Complex With Ish2 Of
P85alpha And The Inhibitor Pik-108
Length = 279
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 8/108 (7%)
Query: 85 LSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKV 144
L + W+ G++ RE+ L ADGT+L+R H + Y L+L+ K +K+
Sbjct: 7 LQDAEWYWGDISREEVNEKLRDTADGTFLVR-DASTKMHGD---YTLTLRKGGNNKLIKI 62
Query: 145 YEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ + DG +Y S F S+VELI Y SL + L+V+L P
Sbjct: 63 FHR--DG--KYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYP 106
>pdb|4EY0|A Chain A, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|B Chain B, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|C Chain C, Structure Of Tandem Sh2 Domains From Plcgamma1
pdb|4EY0|D Chain D, Structure Of Tandem Sh2 Domains From Plcgamma1
Length = 246
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 59/120 (49%), Gaps = 21/120 (17%)
Query: 90 WFVGEMGREKATSLLER-EADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148
W+ + R +A +L R DG +L+R R + PN YA+S + + K+KH +V ++
Sbjct: 124 WYHASLTRAQAEHMLMRVPRDGAFLVRKRNE----PNS--YAISFRAEGKIKHCRVQQE- 176
Query: 149 MDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFR----QIIAVAEFDF 204
Q + + F S+V+LI YE++ L ++L+ P + I AE DF
Sbjct: 177 ----GQTVMLGNSEFDSLVDLISYYEKHPLYR-----KMKLRYPINEEALEKIGTAEPDF 227
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 24/123 (19%)
Query: 90 WFVGEMG-----REKATSLLER------EADGTYLLRIRPQGPTHPNETI---YALSLKT 135
WF G++G R A LL DG++L+R +ET Y LS
Sbjct: 6 WFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVR--------ESETFVGDYTLSFWR 57
Query: 136 DEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
+ KV+H +++ ++ G P++FL+ + F S+ +LI Y++ L N +RL P Q
Sbjct: 58 NGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCN--EFEMRLSEPVPQ 115
Query: 196 IIA 198
A
Sbjct: 116 TNA 118
>pdb|4FBN|A Chain A, Insights Into Structural Integration Of The Plcgamma
Regulatory Region And Mechanism Of Autoinhibition And
Activation Based On Key Roles Of Sh2 Domains
Length = 246
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 24/123 (19%)
Query: 90 WFVGEMG-----REKATSLLER------EADGTYLLRIRPQGPTHPNETI---YALSLKT 135
WF G++G R A LL DG++L+R +ET Y LS
Sbjct: 6 WFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVR--------ESETFVGDYTLSFWR 57
Query: 136 DEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
+ KV+H +++ ++ G P++FL+ + F S+ +LI Y++ L N +RL P Q
Sbjct: 58 NGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCN--EFEMRLSEPVPQ 115
Query: 196 IIA 198
A
Sbjct: 116 TNA 118
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 59/120 (49%), Gaps = 21/120 (17%)
Query: 90 WFVGEMGREKATSLLER-EADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148
W+ + R +A +L R DG +L+R R + PN YA+S + + K+KH +V ++
Sbjct: 124 WYHASLTRAQAEHMLMRVPRDGAFLVRKRNE----PNS--YAISFRAEGKIKHCRVQQE- 176
Query: 149 MDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFR----QIIAVAEFDF 204
Q + + F S+V+LI YE++ L ++L+ P + I AE D+
Sbjct: 177 ----GQTVMLGNSEFDSLVDLISYYEKHPLYR-----KMKLRYPINEEALEKIGTAEPDY 227
>pdb|3GQI|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 226
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 24/123 (19%)
Query: 90 WFVGEMG-----REKATSLLER------EADGTYLLRIRPQGPTHPNETI---YALSLKT 135
WF G++G R A LL DG++L+R +ET Y LS
Sbjct: 6 WFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVR--------ESETFVGDYTLSFWR 57
Query: 136 DEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
+ KV+H +++ ++ G P++FL+ + F S+ +LI Y++ L N +RL P Q
Sbjct: 58 NGKVQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQVPLRCN--EFEMRLSEPVPQ 115
Query: 196 IIA 198
A
Sbjct: 116 TNA 118
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 12/90 (13%)
Query: 90 WFVGEMGREKATSLLER-EADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148
W+ + R +A +L R DG +L+R R + PN YA+S + + K+KH +V ++
Sbjct: 124 WYHASLTRAQAEHMLMRVPRDGAFLVRKRNE----PNS--YAISFRAEGKIKHCRVQQE- 176
Query: 149 MDGVPQYFLSQSRYFRSIVELICCYERNSL 178
Q + + F S+V+LI YE++ L
Sbjct: 177 ----GQTVMLGNSEFDSLVDLISYYEKHPL 202
>pdb|2EKX|A Chain A, Solution Structure Of The Human Bmx Sh2 Domain
Length = 110
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 85 LSEYLWFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMK 143
L +Y WF G + R ++ LL ++ +G +++R Q + T+ S ++K +K
Sbjct: 8 LDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNSSQVGMY---TVSLFSKAVNDKKGTVK 64
Query: 144 VYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
Y + + +L+++ F SI +LI ++ NS G+ RL+ P
Sbjct: 65 HYHVHTNAENKLYLAENYCFDSIPKLIHYHQHNS-----AGMITRLRHP 108
>pdb|2DM0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Tyrosine-
Protein Kinase Txk
Length = 125
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 84 NLSEYLWFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
NL Y W+ + R +A LL +E+ +G +++R ++ T+ +KH
Sbjct: 12 NLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDSRHLGSYTISVFMGARRSTEAAIKH- 70
Query: 143 KVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
Y+ + + Q+++++ F+SI ELI ++ N+ GL RL+ P
Sbjct: 71 --YQIKKNDSGQWYVAERHAFQSIPELIWYHQHNA-----AGLMTRLRYP 113
>pdb|2FCI|A Chain A, Structural Basis For The Requirement Of Two
Phosphotyrosines In Signaling Mediated By Syk Tyrosine
Kinase
pdb|2PLD|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-gamma1 Complexed With A High Affinity
Binding Peptide
pdb|2PLE|A Chain A, Nuclear Magnetic Resonance Structure Of An Sh2 Domain Of
Phospholipase C-Gamma1 Complexed With A High Affinity
Binding Peptide
Length = 105
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 12/90 (13%)
Query: 90 WFVGEMGREKATSLLER-EADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148
W+ + R +A +L R DG +L+R R + PN YA+S + + K+KH +V +
Sbjct: 11 WYHASLTRAQAEHMLMRVPRDGAFLVRKRNE----PNS--YAISFRAEGKIKHCRV---Q 61
Query: 149 MDGVPQYFLSQSRYFRSIVELICCYERNSL 178
+G Q + + F S+V+LI YE++ L
Sbjct: 62 QEG--QTVMLGNSEFDSLVDLISYYEKHPL 89
>pdb|2EO6|A Chain A, Solution Structure Of The Sh2 Domain From Mouse B-Cell
Linker Protein Blnk
Length = 141
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 90 WFVGEMGREKATSLLER-EADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148
W+ G R+ A L R DG++L+R + H ++ Y L +++V ++ V +
Sbjct: 25 WYAGACDRKSAEEALHRSNKDGSFLIR---KSSGHDSKQPYTLVAFFNKRVYNIPV--RF 79
Query: 149 MDGVPQYFLSQSR----YFRSIVELICCYERNSLI 179
++ QY L + + YF S+VE++ ++ N L+
Sbjct: 80 IEATKQYALGKKKNGEEYFGSVVEIVNSHQHNPLV 114
>pdb|2DX0|A Chain A, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
pdb|2DX0|B Chain B, Crystal Structure Of The N-Terminal Sh2 Domain Of Mouse
Phospholipase C-Gamma 2
Length = 138
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 109 DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVE 168
DGT+L+R + T PN+ Y LS +V+H ++ +GV +Y+L+ + F SI
Sbjct: 50 DGTFLVR---ESETFPND--YTLSFWRSGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYA 104
Query: 169 LICCYERNSL 178
LI Y L
Sbjct: 105 LIQHYREAHL 114
>pdb|3EAZ|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), C122s Mutant
Length = 106
Score = 36.6 bits (83), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 90 WFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEM 149
WF G++ RE+A LL G +L+R + +P + Y L + +D KV+H ++ M
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVR---ESTNYPGD--YTLCVSSDGKVEHYRI----M 60
Query: 150 DGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ + + YF ++++L+ Y ++ GL RL P
Sbjct: 61 YHASKLSIDEEVYFENLMQLVEHYTSDA-----DGLCTRLIKP 98
>pdb|2CI9|A Chain A, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
pdb|2CI9|B Chain B, Nck1 Sh2-Domain In Complex With A Dodecaphosphopeptide
From Epec Protein Tir
Length = 102
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 90 WFVGEMGREKAT-SLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148
W+ G++ R +A +L ER +G +L+R + PN+ +++SLK K KH KV KE
Sbjct: 7 WYYGKVTRHQAEMALNERGHEGDFLIR---DSESSPND--FSVSLKAQGKNKHFKVQLKE 61
Query: 149 MDGVPQYFLSQSRYFRSIVELICCYER 175
Y + Q R F ++ EL+ Y++
Sbjct: 62 T----VYCIGQ-RKFSTMEELVEHYKK 83
>pdb|2GE9|A Chain A, Solution Structures Of The Sh2 Domain Of Bruton's Tyrosine
Kinase
Length = 125
Score = 36.6 bits (83), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKH 141
+++ Y W+ M R +A LL++E +G +++R + + T+ + T +
Sbjct: 6 DSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDSSKAGKY---TVSVFAKSTGDPQGV 62
Query: 142 MKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
++ Y QY+L++ F +I ELI ++ NS GL RL+ P Q
Sbjct: 63 IRHYVVCSTPQSQYYLAEKHLFSTIPELINYHQHNS-----AGLISRLKYPVSQ 111
>pdb|2CI8|A Chain A, Sh2 Domain Of Human Nck1 Adaptor Protein - Uncomplexed
Length = 99
Score = 36.2 bits (82), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 11/87 (12%)
Query: 90 WFVGEMGREKAT-SLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148
W+ G++ R +A +L ER +G +L+R + PN+ +++SLK K KH KV KE
Sbjct: 3 WYYGKVTRHQAEMALNERGHEGDFLIR---DSESSPND--FSVSLKAQGKNKHFKVQLKE 57
Query: 149 MDGVPQYFLSQSRYFRSIVELICCYER 175
Y + Q R F ++ EL+ Y++
Sbjct: 58 T----VYCIGQ-RKFSTMEELVEHYKK 79
>pdb|3EAC|A Chain A, Crystal Structure Of Sh2 Domain Of Human Csk (Carboxyl-
Terminal Src Kinase), Oxidized Form
Length = 106
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 90 WFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEM 149
WF G++ RE+A LL G +L+R + +P + Y L + D KV+H ++ M
Sbjct: 10 WFHGKITREQAERLLYPPETGLFLVR---ESTNYPGD--YTLCVSCDGKVEHYRI----M 60
Query: 150 DGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ + + YF ++++L+ Y ++ GL RL P
Sbjct: 61 YHASKLSIDEEVYFENLMQLVEHYTSDA-----DGLCTRLIKP 98
>pdb|1RJA|A Chain A, Solution Structure And Backbone Dynamics Of The
Nonreceptor Tyrosine Kinase Ptk6BRK SH2 DOMAIN
Length = 100
Score = 34.7 bits (78), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 15/108 (13%)
Query: 90 WFVGEMGREKATSLLERE--ADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEK 147
WF G + R +A L+ E A G +L+R+ + P+ Y LS++ + V+H K++ +
Sbjct: 4 WFFGCISRSEAVRRLQAEGNATGAFLIRV-SEKPS----ADYVLSVRDTQAVRHYKIWRR 58
Query: 148 EMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
+ L+++ F S+ EL+ + SL +RL P R+
Sbjct: 59 AGG---RLHLNEAVSFLSLPELVNYHRAQSLSH-----GLRLAAPCRK 98
>pdb|1RQQ|C Chain C, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|D Chain D, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
Length = 114
Score = 34.3 bits (77), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 85 LSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKV 144
LS+Y WF G + R KA L+ ++ L + Q T P E + L+ K KH+++
Sbjct: 8 LSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECV--LTFNFQGKAKHLRL 65
Query: 145 YEKEMDGVPQYFLSQSRYFRSIVELI 170
++G Q + Q +F+S+ +++
Sbjct: 66 ---SLNGHGQCHV-QHLWFQSVFDML 87
>pdb|1MW4|A Chain A, Solution Structure Of The Human Grb7-Sh2 Domain In Complex
With A 10 Amino Acid Peptide Py1139
pdb|2QMS|A Chain A, Crystal Structure Of A Signaling Molecule
pdb|2QMS|B Chain B, Crystal Structure Of A Signaling Molecule
pdb|2QMS|C Chain C, Crystal Structure Of A Signaling Molecule
pdb|2QMS|D Chain D, Crystal Structure Of A Signaling Molecule
pdb|2L4K|A Chain A, Water Refined Solution Structure Of The Human Grb7-Sh2
Domain In Complex With The 10 Amino Acid Peptide Py1139
Length = 120
Score = 34.3 bits (77), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 75 TAKSWADHENLSEYLWFVGEMGREKATSLLEREA--DGTYLLRIRPQGPTHPNETIYALS 132
T+ S A H LWF G + RE++ L+ ++ DG +L+R + N + LS
Sbjct: 7 TSLSAAIHRT---QLWFHGRISREESQRLIGQQGLVDGLFLVR-----ESQRNPQGFVLS 58
Query: 133 LKTDEKVKHMKVYEKEMDGVPQYFLSQSRY-FRSIVELICCYERN 176
L +KVKH + E +G + + + F +++L+ ++ N
Sbjct: 59 LCHLQKVKHYLILPSEEEGRLYFSMDDGQTRFTDLLQLVEFHQLN 103
>pdb|3S9K|A Chain A, Crystal Structure Of The Itk Sh2 Domain
Length = 118
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 84 NLSEYLWFVGEMGREKATS-LLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
NL Y W+ + R+KA LL+ +G +++R T+ + + +KH
Sbjct: 5 NLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHY 64
Query: 143 KVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ E D +Y++++ F SI LI ++ N GL RL+ P
Sbjct: 65 HIKETN-DSPKRYYVAEKYVFDSIPLLIQYHQYNGG-----GLVTRLRYP 108
>pdb|3PQZ|A Chain A, Grb7 Sh2 With Peptide
pdb|3PQZ|B Chain B, Grb7 Sh2 With Peptide
pdb|3PQZ|C Chain C, Grb7 Sh2 With Peptide
pdb|3PQZ|D Chain D, Grb7 Sh2 With Peptide
Length = 117
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 13/106 (12%)
Query: 75 TAKSWADHENLSEYLWFVGEMGREKATSLLEREA--DGTYLLRIRPQGPTHPNETIYALS 132
T+ S A H LWF G + RE++ L+ ++ DG +L+R + N + LS
Sbjct: 4 TSLSAAIHRT---QLWFHGRISREESQRLIGQQGLVDGLFLVR-----ESQRNPQGFVLS 55
Query: 133 LKTDEKVKHMKVYEKEMDGVPQYFLS--QSRYFRSIVELICCYERN 176
L +KVKH + E +G + + Q+R F +++L+ ++ N
Sbjct: 56 LCHLQKVKHYLILPSEEEGRLYFSMDDGQTR-FTDLLQLVEFHQLN 100
>pdb|2K79|B Chain B, Solution Structure Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
pdb|2K7A|B Chain B, Ensemble Structures Of The Binary Complex Between The Sh3
And Sh2 Domain Of Interleukin-2 Tyrosine Kinase
Length = 110
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 84 NLSEYLWFVGEMGREKATS-LLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
NL Y W+ + R+KA LL+ +G +++R T+ + + +KH
Sbjct: 4 NLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHY 63
Query: 143 KVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ E D +Y++++ F SI LI ++ N GL RL+ P
Sbjct: 64 HIKETN-DSPKRYYVAEKYVFDSIPLLIQYHQYNGG-----GLVTRLRYP 107
>pdb|1LUI|A Chain A, Nmr Structures Of Itk Sh2 Domain, Pro287cis Isoform,
Ensemble Of 20 Low Energy Structures
pdb|1LUK|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287cis, Energy
Minimized Average Structure
pdb|1LUM|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287trans, 20 Low
Energy Structures
pdb|1LUN|A Chain A, Nmr Structure Of The Itk Sh2 Domain, Pro287trans, Energy
Minimized Average Structure
Length = 110
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 84 NLSEYLWFVGEMGREKATS-LLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
NL Y W+ + R+KA LL+ +G +++R T+ + + +KH
Sbjct: 3 NLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHY 62
Query: 143 KVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ E D +Y++++ F SI LI ++ N GL RL+ P
Sbjct: 63 HIKETN-DSPKRYYVAEKYVFDSIPLLIQYHQYNGG-----GLVTRLRYP 106
>pdb|2ETZ|A Chain A, The Nmr Minimized Average Structure Of The Itk Sh2 Domain
Bound To A Phosphopeptide
pdb|2EU0|A Chain A, The Nmr Ensemble Structure Of The Itk Sh2 Domain Bound To
A Phosphopeptide
Length = 109
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 49/110 (44%), Gaps = 7/110 (6%)
Query: 84 NLSEYLWFVGEMGREKATS-LLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
NL Y W+ + R+KA LL+ +G +++R T+ + + +KH
Sbjct: 3 NLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDSRTPGTYTVSVFTKAIISENPCIKHY 62
Query: 143 KVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ E D +Y++++ F SI LI ++ N GL RL+ P
Sbjct: 63 HIKETN-DSPKRYYVAEKYVFDSIPLLIQYHQYNGG-----GLVTRLRYP 106
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 90 WFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEM 149
WF G++ RE+A LL G +L+R + +P + Y L + + KV+H ++ M
Sbjct: 82 WFHGKITREQAERLLYPPETGLFLVR---ESTNYPGD--YTLCVSCEGKVEHYRI----M 132
Query: 150 DGVPQYFLSQSRYFRSIVELICCYERNS 177
+ + + YF ++++L+ Y ++
Sbjct: 133 YHASKLSIDEEVYFENLMQLVEHYTTDA 160
>pdb|1RPY|A Chain A, Crystal Structure Of The Dimeric Sh2 Domain Of Aps
pdb|1RPY|B Chain B, Crystal Structure Of The Dimeric Sh2 Domain Of Aps
Length = 114
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 85 LSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKV 144
LS+Y WF G + R KA L+ ++ L + Q T P E + L+ K KH+++
Sbjct: 8 LSDYPWFHGTLSRVKAAQLVLAGGPRSHGLFVIRQSETRPGECV--LTFNFQGKAKHLRL 65
Query: 145 YEKEMDGVPQYFLSQSRYFRSIVELI 170
++G Q + Q +F+S+ + +
Sbjct: 66 ---SLNGHGQCHV-QHLWFQSVFDXL 87
>pdb|2CS0|A Chain A, Solution Structure Of The Sh2 Domain Of Human Hsh2d
Protein
Length = 119
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 90 WFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKV 144
WF G + RE A +LLE + G++L+R+ +H + Y LS K H V
Sbjct: 18 WFHGAISREDAENLLESQPLGSFLIRV-----SH-SHVGYTLSYKAQSSCCHFMV 66
>pdb|1JWO|A Chain A, Crystal Structure Analysis Of The Sh2 Domain Of The Csk
Homologous Kinase Chk
Length = 97
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 85 LSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKV 144
LS WF G++ ++A L+ DG +L+R + HP + + +S D V H +V
Sbjct: 1 LSLMPWFHGKISGQEAVQQLQPPEDGLFLVR---ESARHPGDYVLCVSFGRD--VIHYRV 55
Query: 145 YEKEMDGVPQYFLSQSRYFRSIVELICCYERNS 177
+ DG + ++ +F ++++++ Y ++
Sbjct: 56 LHR--DG--HLTIDEAVFFCNLMDMVEHYSKDK 84
>pdb|3US4|A Chain A, Crystal Structure Of A Sh2 Domain Of A
Megakaryocyte-Associated Tyrosine Kinase (Matk) From
Homo Sapiens At 1.50 A Resolution
Length = 98
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 84 NLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMK 143
LS WF G++ ++A L+ DG +L+R + HP + + +S D V H +
Sbjct: 1 GLSLXPWFHGKISGQEAVQQLQPPEDGLFLVR---ESARHPGDYVLCVSFGRD--VIHYR 55
Query: 144 VYEKEMDGVPQYFLSQSRYFRSIVELICCYERNS 177
V + DG + ++ +F ++ + + Y ++
Sbjct: 56 VLHR--DG--HLTIDEAVFFCNLXDXVEHYSKDK 85
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 89 LWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSL 133
++ V E EKA SL E D +Y LR+ P G N TI A S
Sbjct: 109 VYLVNENPNEKAFSL---EMDESYGLRVSPSGADRVNATITANSF 150
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 89 LWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSL 133
++ V E EKA SL E D +Y LR+ P G N TI A S
Sbjct: 109 VYLVNENPNEKAFSL---EMDESYGLRVSPSGADRVNATITANSF 150
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 89 LWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSL 133
++ V E EKA SL E D +Y LR+ P G N TI A S
Sbjct: 112 VYLVNENPNEKAFSL---EMDESYGLRVSPSGADRVNATITANSF 153
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 129 YALSLKTDEKVKHMKVYEKEMDGVPQYFLSQSRYFRSI 166
Y + + DEK K +K EKEM + + LS+S FR +
Sbjct: 649 YLKARRNDEKEKTIKSMEKEMGKMVELALSESDTFRDV 686
>pdb|1M61|A Chain A, Crystal Structure Of The Apo Sh2 Domains Of Zap-70
Length = 259
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 90 WFVGEMGREKATSLLEREA--DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEK 147
W+ + RE+A L A DG +LLR R + T YALSL + V H Y
Sbjct: 166 WYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQGT------YALSLIYGKTVYH---YLI 216
Query: 148 EMDGVPQYFLSQSRYFRSIVELI 170
D +Y + + F ++ +L+
Sbjct: 217 SQDKAGKYCIPEGTKFDTLWQLV 239
>pdb|2OQ1|A Chain A, Tandem Sh2 Domains Of Zap-70 With 19-Mer Zeta1 Peptide
Length = 254
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 90 WFVGEMGREKATSLLEREA--DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEK 147
W+ + RE+A L A DG +LLR R + T YALSL + V H Y
Sbjct: 161 WYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQGT------YALSLIYGKTVYH---YLI 211
Query: 148 EMDGVPQYFLSQSRYFRSIVELI 170
D +Y + + F ++ +L+
Sbjct: 212 SQDKAGKYCIPEGTKFDTLWQLV 234
>pdb|3BGA|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
pdb|3BGA|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacteroides
Thetaiotaomicron Vpi-5482
Length = 1010
Score = 28.5 bits (62), Expect = 4.6, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 38 IPHTGR-CGTGVPLPAMSPRPPLMDIAGAAQPLGGN-------EWTAKSWADHENLSEYL 89
IP G CG G+ P P L+++ Q + + K+W D NL+EY+
Sbjct: 588 IPSFGNFCGNGLVNAVREPHPHLLEVKKIYQNIKATLSDRKNLKVCIKNWYDFSNLNEYI 647
Query: 90 --WFV-GEMG 96
W V GE G
Sbjct: 648 LRWNVKGEDG 657
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 90 WFVGEMGREKATSLLEREA--DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEK 147
W+ + RE+A L A DG +LLR R + T YALSL + V H Y
Sbjct: 163 WYHSSLTREEAERKLYSGAQTDGKFLLRPRKEQGT------YALSLIYGKTVYH---YLI 213
Query: 148 EMDGVPQYFLSQSRYFRSIVELI 170
D +Y + + F ++ +L+
Sbjct: 214 SQDKAGKYCIPEGTKFDTLWQLV 236
>pdb|1GL5|A Chain A, Nmr Structure Of The Sh3 Domain From The Tec Protein
Tyrosine Kinase
Length = 67
Score = 27.7 bits (60), Expect = 6.5, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVL 223
I VA +DF TEA+ L L++G + I+L
Sbjct: 4 IVVAMYDFQATEAHDLRLERGQEYIIL 30
>pdb|1UUR|A Chain A, Structure Of An Activated Dictyostelium Stat In Its
Dna-Unbound Form
pdb|1UUS|A Chain A, Structure Of An Activated Dictyostelium Stat In Its
Dna-Unbound Form
Length = 473
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 93 GEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGV 152
G MGR++ L+ + GT+++R + P I + ++ ++KH V +
Sbjct: 356 GYMGRQEVNDALQNQDPGTFIIRFSERNPGQ--FGIAYIGVEMPARIKHYLVQPNDTAAA 413
Query: 153 PQY---FLSQSRYFRSIVE 168
+ FLS+ F ++++
Sbjct: 414 KKTFPDFLSEHSQFVNLLQ 432
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,602,216
Number of Sequences: 62578
Number of extensions: 292499
Number of successful extensions: 630
Number of sequences better than 100.0: 61
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 584
Number of HSP's gapped (non-prelim): 66
length of query: 272
length of database: 14,973,337
effective HSP length: 97
effective length of query: 175
effective length of database: 8,903,271
effective search space: 1558072425
effective search space used: 1558072425
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)