Query psy3210
Match_columns 272
No_of_seqs 270 out of 1785
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 19:09:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3210.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3210hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2996|consensus 100.0 1.7E-55 3.7E-60 408.9 12.1 234 11-253 539-863 (865)
2 KOG4278|consensus 100.0 8E-30 1.7E-34 241.3 9.3 183 71-267 134-329 (1157)
3 KOG1264|consensus 99.9 6.1E-28 1.3E-32 232.0 10.8 157 80-254 640-832 (1267)
4 KOG4792|consensus 99.9 4E-27 8.8E-32 198.0 9.3 156 83-252 6-180 (293)
5 KOG0197|consensus 99.9 2.5E-27 5.4E-32 221.5 5.3 183 69-267 55-267 (468)
6 KOG3601|consensus 99.9 6.1E-26 1.3E-30 189.5 3.3 172 69-254 42-220 (222)
7 smart00252 SH2 Src homology 2 99.8 8.3E-21 1.8E-25 140.2 9.6 83 88-178 1-83 (84)
8 cd00173 SH2 Src homology 2 dom 99.8 1.2E-20 2.7E-25 141.8 9.8 94 89-193 1-94 (94)
9 PF00017 SH2: SH2 domain; Int 99.8 4.5E-20 9.7E-25 134.1 8.2 76 90-173 1-77 (77)
10 KOG4637|consensus 99.8 9.8E-20 2.1E-24 162.9 8.0 103 83-194 18-120 (464)
11 KOG0194|consensus 99.8 4E-18 8.6E-23 161.5 10.5 162 83-267 44-227 (474)
12 KOG4226|consensus 99.7 1E-16 2.2E-21 138.8 9.5 88 85-182 278-366 (379)
13 KOG0790|consensus 99.6 7.9E-16 1.7E-20 141.2 7.3 106 76-194 101-216 (600)
14 KOG4637|consensus 99.6 2.9E-15 6.3E-20 134.4 5.7 97 88-193 332-428 (464)
15 KOG1264|consensus 99.5 3.6E-14 7.8E-19 137.8 8.6 105 83-194 529-640 (1267)
16 PF14604 SH3_9: Variant SH3 do 99.5 4.6E-14 9.9E-19 93.7 5.4 49 200-250 1-49 (49)
17 PF07653 SH3_2: Variant SH3 do 99.3 3.4E-12 7.4E-17 86.7 5.5 53 198-252 2-55 (55)
18 KOG2070|consensus 99.2 4.9E-12 1.1E-16 117.5 4.1 61 197-259 19-79 (661)
19 KOG2199|consensus 99.2 2.4E-12 5.2E-17 116.9 1.5 54 195-250 215-268 (462)
20 KOG1118|consensus 99.1 2.3E-11 5E-16 107.3 2.0 60 194-255 305-364 (366)
21 PF00018 SH3_1: SH3 domain; I 99.1 1.6E-10 3.5E-15 76.1 5.4 46 199-246 1-48 (48)
22 KOG4348|consensus 99.0 4.4E-11 9.5E-16 109.8 0.2 59 195-255 100-158 (627)
23 smart00326 SH3 Src homology 3 99.0 9.3E-10 2E-14 74.1 4.9 53 197-251 4-57 (58)
24 cd00174 SH3 Src homology 3 dom 99.0 1.4E-09 3E-14 72.3 5.5 52 198-251 2-54 (54)
25 KOG0790|consensus 99.0 7.2E-10 1.6E-14 102.4 5.3 97 87-193 3-102 (600)
26 KOG1930|consensus 99.0 6.4E-10 1.4E-14 101.8 4.9 94 86-193 210-321 (483)
27 KOG1029|consensus 99.0 2.5E-10 5.3E-15 111.0 2.3 52 197-250 1055-1106(1118)
28 KOG2856|consensus 98.9 1.9E-10 4.1E-15 103.7 0.9 56 196-252 415-471 (472)
29 KOG4226|consensus 98.9 9.5E-10 2.1E-14 95.8 4.2 57 197-255 109-165 (379)
30 KOG0162|consensus 98.8 1.8E-09 3.8E-14 104.8 3.4 56 195-252 1051-1106(1106)
31 KOG4225|consensus 98.8 3.3E-09 7.2E-14 97.7 3.9 57 196-254 231-287 (489)
32 KOG4348|consensus 98.8 4.1E-09 8.9E-14 97.0 3.4 59 195-253 261-319 (627)
33 KOG1029|consensus 98.5 2.6E-08 5.6E-13 97.2 1.9 58 196-256 814-871 (1118)
34 KOG3875|consensus 98.4 4.7E-08 1E-12 86.7 0.3 58 197-254 270-332 (362)
35 KOG4225|consensus 98.3 2.8E-07 6.1E-12 85.2 3.3 52 198-251 435-488 (489)
36 KOG1843|consensus 98.3 2.2E-07 4.8E-12 85.2 1.7 57 195-251 416-472 (473)
37 KOG3751|consensus 98.2 5.3E-07 1.2E-11 85.1 2.3 98 83-191 514-615 (622)
38 KOG3655|consensus 98.2 5.2E-07 1.1E-11 84.3 1.5 56 195-252 427-483 (484)
39 KOG2546|consensus 98.2 9.8E-07 2.1E-11 81.4 2.7 54 197-252 425-478 (483)
40 KOG3697|consensus 98.1 3.5E-06 7.5E-11 74.3 4.8 106 83-195 196-343 (345)
41 KOG0515|consensus 98.1 1.1E-06 2.4E-11 83.1 1.8 56 196-251 684-740 (752)
42 KOG1702|consensus 98.1 2.1E-06 4.6E-11 72.1 2.6 56 194-251 206-263 (264)
43 KOG2222|consensus 98.0 1.6E-06 3.4E-11 81.3 1.6 56 196-253 549-604 (848)
44 KOG3632|consensus 97.8 1.2E-05 2.7E-10 80.7 3.8 58 196-254 1139-1204(1335)
45 PF14633 SH2_2: SH2 domain; PD 97.6 0.00036 7.8E-09 60.5 9.1 82 87-175 37-123 (220)
46 KOG3523|consensus 97.5 2.5E-05 5.5E-10 75.2 -0.1 55 197-253 610-666 (695)
47 PF00130 C1_1: Phorbol esters/ 97.3 0.00012 2.6E-09 48.9 1.8 32 14-45 19-51 (53)
48 KOG4236|consensus 97.2 6.2E-05 1.3E-09 72.2 -0.3 36 12-47 284-320 (888)
49 KOG4278|consensus 97.2 0.00029 6.3E-09 68.9 3.2 62 196-258 91-152 (1157)
50 KOG3632|consensus 96.9 0.00043 9.4E-09 70.0 2.1 59 197-256 1246-1311(1335)
51 KOG4566|consensus 96.9 0.0013 2.8E-08 58.2 4.6 87 83-178 47-140 (258)
52 KOG0695|consensus 96.8 0.00054 1.2E-08 62.6 1.8 36 13-48 148-184 (593)
53 KOG4429|consensus 96.8 0.00066 1.4E-08 60.3 2.2 55 196-252 364-418 (421)
54 KOG4773|consensus 96.8 0.00021 4.6E-09 64.7 -1.1 54 197-252 177-230 (386)
55 KOG4575|consensus 96.8 0.0013 2.8E-08 63.9 4.1 55 189-249 5-62 (874)
56 KOG3601|consensus 96.8 0.00019 4.2E-09 60.9 -1.3 52 198-250 3-54 (222)
57 KOG3771|consensus 96.7 0.00069 1.5E-08 63.8 1.3 54 196-250 401-454 (460)
58 KOG4792|consensus 96.6 0.0019 4.2E-08 55.5 3.2 54 197-252 229-284 (293)
59 KOG2528|consensus 96.6 0.00085 1.8E-08 62.7 1.1 56 197-253 4-60 (490)
60 cd00029 C1 Protein kinase C co 96.5 0.0016 3.4E-08 42.5 1.7 29 14-42 19-47 (50)
61 KOG1451|consensus 96.4 0.0027 5.9E-08 61.3 3.7 56 195-251 756-811 (812)
62 KOG3725|consensus 96.2 0.0016 3.4E-08 57.0 0.5 56 196-251 318-373 (375)
63 KOG3557|consensus 96.0 0.0017 3.8E-08 63.2 0.1 58 196-256 501-559 (721)
64 KOG0197|consensus 96.0 0.0023 5E-08 61.0 0.6 56 195-252 11-69 (468)
65 KOG0609|consensus 96.0 0.0061 1.3E-07 58.5 3.4 58 195-254 214-283 (542)
66 smart00109 C1 Protein kinase C 95.8 0.004 8.7E-08 40.2 1.1 27 15-42 20-46 (49)
67 KOG4236|consensus 95.6 0.023 5.1E-07 55.0 5.6 32 15-46 165-197 (888)
68 KOG3775|consensus 94.7 0.014 3E-07 53.7 1.3 57 196-254 263-321 (482)
69 KOG0696|consensus 92.9 0.033 7.2E-07 52.5 0.3 33 14-46 129-162 (683)
70 KOG0192|consensus 92.8 0.035 7.6E-07 51.9 0.4 21 247-267 85-105 (362)
71 KOG0196|consensus 91.7 0.079 1.7E-06 53.5 1.3 46 219-267 635-696 (996)
72 KOG0199|consensus 91.2 0.18 3.9E-06 50.6 3.2 52 198-250 377-430 (1039)
73 KOG1856|consensus 91.2 0.2 4.4E-06 52.3 3.7 82 87-175 1107-1193(1299)
74 KOG0615|consensus 91.0 0.088 1.9E-06 49.5 0.8 23 245-267 219-242 (475)
75 PF08239 SH3_3: Bacterial SH3 90.7 0.49 1.1E-05 31.1 4.1 36 214-250 19-55 (55)
76 KOG0040|consensus 90.6 0.0092 2E-07 63.1 -6.5 67 196-265 969-1035(2399)
77 PF14633 SH2_2: SH2 domain; PD 89.1 0.44 9.6E-06 41.4 3.6 82 84-176 131-219 (220)
78 KOG0585|consensus 86.8 0.26 5.6E-06 47.4 0.7 20 248-267 155-174 (576)
79 KOG0199|consensus 86.3 0.18 3.9E-06 50.7 -0.6 22 246-267 156-177 (1039)
80 KOG0694|consensus 86.3 0.15 3.2E-06 50.7 -1.2 38 9-46 172-210 (694)
81 KOG1090|consensus 85.8 0.32 6.9E-06 50.3 0.9 26 21-46 1559-1584(1732)
82 PF03107 C1_2: C1 domain; Int 85.6 0.39 8.5E-06 28.0 0.9 16 23-38 15-30 (30)
83 KOG0600|consensus 84.7 0.35 7.5E-06 46.7 0.5 25 243-267 158-182 (560)
84 smart00287 SH3b Bacterial SH3 84.4 1.6 3.5E-05 29.3 3.7 36 213-250 26-62 (63)
85 KOG0663|consensus 83.8 0.43 9.3E-06 44.1 0.7 23 244-266 118-140 (419)
86 KOG1856|consensus 83.6 2.4 5.2E-05 44.7 5.9 81 86-177 1203-1288(1299)
87 KOG0658|consensus 83.6 0.49 1.1E-05 43.8 1.0 20 250-269 66-85 (364)
88 KOG1095|consensus 82.3 0.49 1.1E-05 49.6 0.5 22 246-267 740-761 (1025)
89 PF13831 PHD_2: PHD-finger; PD 82.0 0.44 9.6E-06 29.1 0.0 18 23-40 4-21 (36)
90 KOG3565|consensus 80.8 0.43 9.2E-06 47.8 -0.5 56 196-252 579-636 (640)
91 KOG4257|consensus 80.4 0.6 1.3E-05 46.5 0.4 22 246-267 436-457 (974)
92 KOG3705|consensus 80.1 1.1 2.4E-05 42.0 2.0 88 162-251 471-565 (580)
93 KOG1011|consensus 80.1 0.31 6.7E-06 48.3 -1.7 30 15-44 192-222 (1283)
94 KOG0591|consensus 79.7 0.56 1.2E-05 42.5 -0.1 21 246-266 63-83 (375)
95 PRK10884 SH3 domain-containing 79.4 2.5 5.4E-05 36.4 3.8 40 213-253 49-89 (206)
96 PF14603 hSH3: Helically-exten 79.2 4.4 9.5E-05 29.9 4.4 43 206-250 27-70 (89)
97 KOG0957|consensus 79.0 1.2 2.7E-05 42.8 1.9 20 24-43 137-156 (707)
98 KOG1094|consensus 78.2 0.86 1.9E-05 45.1 0.7 22 246-267 580-601 (807)
99 PF08746 zf-RING-like: RING-li 77.2 0.75 1.6E-05 29.3 -0.0 24 17-40 5-30 (43)
100 KOG0586|consensus 75.5 1.1 2.5E-05 44.0 0.7 20 248-267 102-121 (596)
101 KOG0662|consensus 75.4 0.84 1.8E-05 38.7 -0.2 24 244-267 44-67 (292)
102 KOG0193|consensus 73.7 1.8 3.9E-05 42.8 1.6 45 222-266 401-453 (678)
103 KOG0595|consensus 73.6 1.3 2.8E-05 41.8 0.5 21 247-267 55-75 (429)
104 PF07649 C1_3: C1-like domain; 73.3 0.97 2.1E-05 26.2 -0.2 18 21-38 13-30 (30)
105 KOG0696|consensus 72.5 1.8 3.9E-05 41.3 1.2 36 12-47 62-98 (683)
106 KOG0584|consensus 72.5 0.91 2E-05 44.8 -0.8 56 214-269 48-109 (632)
107 KOG0694|consensus 71.5 1.7 3.7E-05 43.4 0.8 33 15-47 250-283 (694)
108 cd07872 STKc_PCTAIRE2 Catalyti 71.3 5.2 0.00011 35.5 3.9 22 247-268 50-71 (309)
109 PF13922 PHD_3: PHD domain of 70.7 1.1 2.3E-05 31.1 -0.5 20 25-44 45-64 (69)
110 KOG1187|consensus 70.7 1.8 4E-05 40.3 0.8 22 246-267 116-137 (361)
111 PHA03211 serine/threonine kina 70.1 5.4 0.00012 38.4 4.0 48 221-268 172-227 (461)
112 cd05073 PTKc_Hck Catalytic dom 69.3 3.9 8.5E-05 35.1 2.6 24 246-269 46-69 (260)
113 PHA03212 serine/threonine kina 69.1 6.2 0.00013 36.9 4.0 22 247-268 129-150 (391)
114 COG3103 SH3 domain protein [Si 68.6 7.6 0.00017 33.4 4.1 42 213-255 49-91 (205)
115 KOG3508|consensus 68.6 6.3 0.00014 40.9 4.1 55 87-146 80-136 (932)
116 cd05072 PTKc_Lyn Catalytic dom 68.3 4 8.8E-05 35.0 2.5 24 246-269 46-69 (261)
117 PF02762 Cbl_N3: CBL proto-onc 68.1 18 0.0004 26.1 5.2 42 89-135 3-46 (86)
118 KOG1025|consensus 67.9 2 4.4E-05 44.2 0.5 21 247-267 744-764 (1177)
119 PRK00420 hypothetical protein; 67.4 1.8 3.8E-05 33.6 -0.0 40 7-46 7-48 (112)
120 PF06347 SH3_4: Bacterial SH3 67.2 12 0.00027 24.5 4.1 35 212-249 19-53 (55)
121 KOG1026|consensus 67.1 2.1 4.5E-05 43.7 0.4 22 246-267 534-555 (774)
122 KOG0593|consensus 66.8 1.9 4.2E-05 39.4 0.1 19 248-266 48-66 (396)
123 KOG0033|consensus 66.6 2.3 5E-05 37.9 0.6 23 247-269 56-78 (355)
124 KOG4250|consensus 66.2 2.1 4.6E-05 43.0 0.3 20 248-267 58-77 (732)
125 cd05070 PTKc_Fyn_Yrk Catalytic 65.5 3 6.5E-05 35.8 1.1 24 245-268 45-68 (260)
126 cd05068 PTKc_Frk_like Catalyti 63.3 6.3 0.00014 33.8 2.7 24 245-268 45-68 (261)
127 KOG4384|consensus 63.2 3.7 8E-05 37.9 1.2 62 187-251 129-192 (361)
128 KOG3812|consensus 63.1 2.4 5.3E-05 39.0 0.0 36 210-247 80-118 (475)
129 smart00743 Agenet Tudor-like d 63.0 11 0.00024 25.3 3.3 24 213-238 2-25 (61)
130 PHA02988 hypothetical protein; 62.7 3.3 7.2E-05 36.5 0.8 22 247-268 64-85 (283)
131 PF11302 DUF3104: Protein of u 61.7 11 0.00024 27.0 3.1 28 211-238 3-34 (75)
132 cd05034 PTKc_Src_like Catalyti 61.3 6.7 0.00015 33.5 2.5 23 246-268 46-68 (261)
133 cd05071 PTKc_Src Catalytic dom 61.2 6.7 0.00015 33.8 2.5 24 245-268 45-68 (262)
134 cd07873 STKc_PCTAIRE1 Catalyti 60.7 10 0.00022 33.5 3.6 23 246-268 49-71 (301)
135 KOG2996|consensus 60.5 3.8 8.2E-05 40.4 0.8 40 210-250 625-666 (865)
136 KOG0193|consensus 58.1 3.1 6.7E-05 41.3 -0.2 32 15-46 195-227 (678)
137 cd05114 PTKc_Tec_Rlk Catalytic 57.8 9.7 0.00021 32.5 2.9 25 245-269 43-67 (256)
138 cd05076 PTK_Tyk2_rpt1 Pseudoki 57.7 4.6 0.0001 35.3 0.8 23 246-268 61-83 (274)
139 PHA03209 serine/threonine kina 57.6 13 0.00028 34.0 3.8 21 247-267 103-123 (357)
140 cd05067 PTKc_Lck_Blk Catalytic 57.1 7.2 0.00016 33.4 2.0 22 246-267 46-67 (260)
141 cd06644 STKc_STK10_LOK Catalyt 57.1 4 8.7E-05 35.8 0.4 22 247-268 55-76 (292)
142 PTZ00263 protein kinase A cata 57.0 18 0.00039 32.6 4.7 22 247-268 64-85 (329)
143 KOG0611|consensus 57.0 4.5 9.8E-05 38.5 0.7 18 250-267 102-119 (668)
144 PRK13914 invasion associated s 55.5 15 0.00033 35.6 4.0 43 213-257 104-147 (481)
145 KOG3667|consensus 55.3 20 0.00043 36.1 4.8 52 89-145 564-616 (682)
146 PF07714 Pkinase_Tyr: Protein 53.0 5.1 0.00011 34.6 0.4 22 246-267 46-67 (259)
147 cd05064 PTKc_EphR_A10 Catalyti 52.6 6.6 0.00014 33.9 1.0 23 246-268 51-73 (266)
148 cd05096 PTKc_DDR1 Catalytic do 50.5 6.9 0.00015 34.6 0.8 21 247-267 65-85 (304)
149 PHA03207 serine/threonine kina 49.5 22 0.00048 33.0 4.0 20 248-267 133-152 (392)
150 cd07868 STKc_CDK8 Catalytic do 49.2 7.4 0.00016 34.5 0.8 22 247-268 44-65 (317)
151 cd07871 STKc_PCTAIRE3 Catalyti 48.7 7.7 0.00017 34.0 0.8 23 246-268 48-70 (288)
152 KOG4717|consensus 48.5 7 0.00015 38.4 0.5 21 246-266 62-82 (864)
153 cd07860 STKc_CDK2_3 Catalytic 48.4 7.5 0.00016 33.8 0.7 23 246-268 44-66 (284)
154 PTZ00036 glycogen synthase kin 48.0 23 0.0005 33.6 4.0 19 249-267 107-125 (440)
155 PF06677 Auto_anti-p27: Sjogre 47.4 4.9 0.00011 25.3 -0.5 25 9-33 3-27 (41)
156 KOG0575|consensus 47.3 8.4 0.00018 38.1 0.8 20 248-267 65-84 (592)
157 cd07859 STKc_TDY_MAPK_plant Ca 47.3 7.9 0.00017 34.6 0.7 22 246-267 44-65 (338)
158 KOG0661|consensus 47.0 7.9 0.00017 37.5 0.6 20 248-267 55-75 (538)
159 cd05069 PTKc_Yes Catalytic dom 46.5 16 0.00034 31.3 2.4 23 246-268 46-68 (260)
160 cd07866 STKc_BUR1 Catalytic do 46.0 22 0.00048 31.0 3.4 22 246-267 52-73 (311)
161 cd05087 PTKc_Aatyk1_Aatyk3 Cat 45.9 8.7 0.00019 33.1 0.7 23 246-268 40-62 (269)
162 PF14446 Prok-RING_1: Prokaryo 45.8 9 0.0002 25.6 0.6 26 21-46 19-44 (54)
163 cd06615 PKc_MEK Catalytic doma 45.6 9.3 0.0002 33.9 0.9 23 246-268 44-66 (308)
164 cd05042 PTKc_Aatyk Catalytic d 45.0 9.7 0.00021 32.8 0.9 22 246-267 40-61 (269)
165 KOG1035|consensus 45.0 7.9 0.00017 41.5 0.3 21 248-268 524-544 (1351)
166 cd06650 PKc_MEK1 Catalytic dom 44.7 8.8 0.00019 34.7 0.6 23 246-268 48-70 (333)
167 PF13696 zf-CCHC_2: Zinc knuck 44.6 9.6 0.00021 22.7 0.5 14 21-34 6-19 (32)
168 PF05641 Agenet: Agenet domain 44.5 27 0.00058 24.2 2.9 25 214-238 1-26 (68)
169 cd07869 STKc_PFTAIRE1 Catalyti 44.2 10 0.00022 33.5 0.9 21 247-267 49-69 (303)
170 KOG0659|consensus 44.1 8.8 0.00019 34.6 0.4 22 245-266 45-66 (318)
171 cd05075 PTKc_Axl Catalytic dom 43.5 9.8 0.00021 32.7 0.6 22 246-267 45-66 (272)
172 cd06649 PKc_MEK2 Catalytic dom 43.4 11 0.00024 34.0 1.0 22 246-267 48-69 (331)
173 cd05077 PTK_Jak1_rpt1 Pseudoki 43.3 11 0.00024 32.5 0.9 24 246-269 49-72 (262)
174 cd05086 PTKc_Aatyk2 Catalytic 43.2 11 0.00024 32.5 0.9 23 245-267 39-61 (268)
175 KOG0582|consensus 43.1 12 0.00025 36.1 1.1 23 247-269 70-92 (516)
176 cd00729 rubredoxin_SM Rubredox 42.9 20 0.00044 21.4 1.8 23 24-46 3-26 (34)
177 cd05084 PTKc_Fes Catalytic dom 42.8 11 0.00024 32.0 0.8 23 246-268 38-60 (252)
178 cd05108 PTKc_EGFR Catalytic do 42.5 11 0.00025 33.5 0.9 22 246-267 54-75 (316)
179 smart00557 IG_FLMN Filamin-typ 42.5 37 0.0008 24.8 3.6 30 103-137 49-78 (93)
180 cd05113 PTKc_Btk_Bmx Catalytic 42.3 11 0.00025 32.2 0.9 25 245-269 43-67 (256)
181 cd05582 STKc_RSK_N N-terminal 42.3 12 0.00027 33.3 1.1 22 247-268 44-65 (318)
182 cd05046 PTK_CCK4 Pseudokinase 42.0 11 0.00024 32.5 0.7 24 246-269 53-76 (275)
183 KOG4239|consensus 41.5 5.1 0.00011 36.4 -1.5 31 16-46 72-103 (348)
184 TIGR00354 polC DNA polymerase, 41.3 16 0.00034 38.4 1.7 31 16-46 1005-1036(1095)
185 cd05080 PTKc_Tyk2_rpt2 Catalyt 41.2 11 0.00023 32.8 0.5 22 246-267 51-72 (283)
186 cd05044 PTKc_c-ros Catalytic d 41.1 12 0.00027 32.0 0.9 21 247-267 45-65 (269)
187 cd07867 STKc_CDC2L6 Catalytic 41.0 12 0.00025 33.2 0.7 22 247-268 44-65 (317)
188 PRK04023 DNA polymerase II lar 40.9 16 0.00035 38.5 1.7 31 16-46 1030-1061(1121)
189 KOG1989|consensus 40.9 10 0.00023 38.7 0.4 20 248-267 81-101 (738)
190 cd05115 PTKc_Zap-70 Catalytic 40.9 11 0.00023 32.5 0.4 22 246-267 40-61 (257)
191 cd05595 STKc_PKB_beta Catalyti 40.6 14 0.0003 33.3 1.1 23 247-269 41-63 (323)
192 cd05052 PTKc_Abl Catalytic dom 40.6 22 0.00048 30.4 2.4 23 246-268 47-69 (263)
193 cd07844 STKc_PCTAIRE_like Cata 40.3 13 0.00028 32.4 0.9 23 246-268 48-70 (291)
194 cd05062 PTKc_IGF-1R Catalytic 40.1 12 0.00027 32.3 0.8 22 247-268 55-76 (277)
195 cd05037 PTK_Jak_rpt1 Pseudokin 39.9 12 0.00027 31.7 0.7 25 245-269 45-69 (259)
196 cd05045 PTKc_RET Catalytic dom 39.7 13 0.00029 32.4 0.9 24 246-269 48-71 (290)
197 PLN00009 cyclin-dependent kina 39.4 12 0.00026 32.7 0.6 24 245-268 45-68 (294)
198 cd05066 PTKc_EphR_A Catalytic 39.3 14 0.0003 31.8 0.9 21 247-267 51-71 (267)
199 cd05083 PTKc_Chk Catalytic dom 39.1 22 0.00049 30.2 2.2 23 246-268 44-66 (254)
200 cd05102 PTKc_VEGFR3 Catalytic 38.9 12 0.00026 33.7 0.4 22 247-268 56-78 (338)
201 cd07839 STKc_CDK5 Catalytic do 38.7 13 0.00029 32.1 0.7 24 244-267 42-65 (284)
202 cd06611 STKc_SLK_like Catalyti 38.6 12 0.00027 32.3 0.5 22 246-267 47-68 (280)
203 cd05074 PTKc_Tyro3 Catalytic d 38.3 14 0.0003 31.7 0.8 23 246-268 46-68 (273)
204 cd05105 PTKc_PDGFR_alpha Catal 38.1 13 0.00027 35.1 0.5 22 246-267 85-107 (400)
205 cd05585 STKc_YPK1_like Catalyt 38.0 14 0.0003 32.9 0.7 23 246-268 38-60 (312)
206 cd05058 PTKc_Met_Ron Catalytic 37.7 16 0.00035 31.1 1.1 22 246-267 41-62 (262)
207 cd05584 STKc_p70S6K Catalytic 37.6 14 0.00031 33.1 0.8 22 247-268 46-67 (323)
208 KOG0578|consensus 37.4 10 0.00023 37.1 -0.2 20 248-267 317-336 (550)
209 PTZ00266 NIMA-related protein 37.2 32 0.0007 36.6 3.3 21 247-267 58-78 (1021)
210 cd05095 PTKc_DDR2 Catalytic do 37.2 15 0.00032 32.3 0.8 23 246-268 64-86 (296)
211 cd05040 PTKc_Ack_like Catalyti 36.9 15 0.00032 31.2 0.8 22 246-267 41-62 (257)
212 cd07864 STKc_CDK12 Catalytic d 36.6 14 0.00031 32.2 0.6 23 245-267 50-72 (302)
213 PLN00034 mitogen-activated pro 36.6 15 0.00033 33.4 0.7 22 246-267 117-138 (353)
214 cd05612 STKc_PRKX_like Catalyt 36.6 13 0.00028 32.8 0.3 23 247-269 47-69 (291)
215 cd05078 PTK_Jak2_Jak3_rpt1 Pse 36.4 15 0.00033 31.4 0.7 22 246-267 44-65 (258)
216 KOG1829|consensus 36.4 14 0.0003 36.8 0.4 21 15-35 332-352 (580)
217 KOG0198|consensus 36.0 15 0.00034 33.6 0.7 21 248-268 61-81 (313)
218 PRK00398 rpoP DNA-directed RNA 35.8 24 0.00052 22.4 1.4 24 23-46 3-29 (46)
219 cd05082 PTKc_Csk Catalytic dom 35.8 35 0.00077 28.9 2.9 22 247-268 45-66 (256)
220 KOG0594|consensus 35.7 15 0.00033 33.8 0.6 24 244-267 53-77 (323)
221 PHA03210 serine/threonine kina 35.5 17 0.00036 35.3 0.9 21 247-267 209-229 (501)
222 cd05571 STKc_PKB Catalytic dom 35.3 19 0.00041 32.3 1.1 23 247-269 41-63 (323)
223 cd05593 STKc_PKB_gamma Catalyt 35.2 19 0.00041 32.4 1.2 24 246-269 40-63 (328)
224 cd05051 PTKc_DDR Catalytic dom 35.2 15 0.00033 32.0 0.5 23 246-268 64-86 (296)
225 cd06621 PKc_MAPKK_Pek1_like Ca 35.2 17 0.00036 31.8 0.8 22 246-267 44-65 (287)
226 KOG0032|consensus 35.1 16 0.00035 34.4 0.7 21 247-267 81-102 (382)
227 cd08229 STKc_Nek7 Catalytic do 34.9 15 0.00032 31.4 0.4 24 246-269 47-70 (267)
228 cd05065 PTKc_EphR_B Catalytic 34.8 17 0.00038 31.1 0.8 23 246-268 50-72 (269)
229 cd06619 PKc_MKK5 Catalytic dom 34.7 18 0.00039 31.4 0.9 24 246-269 44-67 (279)
230 cd05578 STKc_Yank1 Catalytic d 34.6 14 0.00031 31.4 0.3 22 246-267 45-66 (258)
231 cd05056 PTKc_FAK Catalytic dom 34.6 18 0.00038 31.1 0.8 21 247-267 53-73 (270)
232 cd05085 PTKc_Fer Catalytic dom 34.5 19 0.00041 30.5 1.0 21 247-267 38-58 (250)
233 cd07845 STKc_CDK10 Catalytic d 34.5 19 0.00042 31.8 1.1 22 246-267 51-72 (309)
234 cd05057 PTKc_EGFR_like Catalyt 34.3 18 0.00039 31.3 0.8 21 247-267 55-75 (279)
235 KOG0597|consensus 34.3 13 0.00028 37.1 -0.1 22 246-267 46-67 (808)
236 cd06625 STKc_MEKK3_like Cataly 34.2 17 0.00037 30.9 0.7 21 247-267 50-70 (263)
237 cd08228 STKc_Nek6 Catalytic do 34.2 17 0.00037 31.0 0.7 21 247-267 48-68 (267)
238 PRK14714 DNA polymerase II lar 34.2 23 0.0005 38.3 1.7 31 16-46 1246-1277(1337)
239 cd08221 STKc_Nek9 Catalytic do 34.2 17 0.00037 30.8 0.7 22 247-268 45-66 (256)
240 PTZ00426 cAMP-dependent protei 34.2 19 0.00041 32.8 1.0 21 248-268 78-98 (340)
241 cd05043 PTK_Ryk Pseudokinase d 33.7 19 0.00042 31.1 0.9 22 247-268 54-75 (280)
242 cd05104 PTKc_Kit Catalytic dom 33.7 16 0.00035 33.7 0.5 22 247-268 84-106 (375)
243 cd07865 STKc_CDK9 Catalytic do 33.7 19 0.0004 31.6 0.8 22 247-268 57-78 (310)
244 cd08227 PK_STRAD_alpha Pseudok 33.7 19 0.00041 32.2 0.9 21 247-267 45-65 (327)
245 cd07843 STKc_CDC2L1 Catalytic 33.6 17 0.00037 31.7 0.6 23 245-267 48-70 (293)
246 cd08529 STKc_FA2-like Catalyti 33.4 18 0.00039 30.6 0.7 23 246-268 44-66 (256)
247 cd05081 PTKc_Jak2_Jak3_rpt2 Ca 33.3 18 0.0004 31.3 0.7 22 247-268 51-72 (284)
248 PF09151 DUF1936: Domain of un 33.2 19 0.00042 21.1 0.6 10 25-34 3-12 (36)
249 PRK14715 DNA polymerase II lar 32.8 25 0.00054 38.3 1.7 30 16-46 1535-1565(1627)
250 cd07836 STKc_Pho85 Catalytic d 32.8 18 0.0004 31.2 0.6 24 246-269 43-66 (284)
251 cd05097 PTKc_DDR_like Catalyti 32.7 21 0.00046 31.3 1.0 22 247-268 63-84 (295)
252 cd00350 rubredoxin_like Rubred 32.7 38 0.00082 19.9 1.8 23 24-46 2-25 (33)
253 COG1439 Predicted nucleic acid 32.4 22 0.00048 29.8 1.0 27 19-46 135-161 (177)
254 cd05035 PTKc_Axl_like Catalyti 32.2 20 0.00043 30.7 0.7 22 246-267 46-67 (273)
255 cd05110 PTKc_HER4 Catalytic do 32.2 22 0.00048 31.4 1.1 21 247-267 55-75 (303)
256 cd05033 PTKc_EphR Catalytic do 32.0 20 0.00044 30.7 0.8 22 246-267 50-71 (266)
257 cd07848 STKc_CDKL5 Catalytic d 32.0 19 0.00041 31.3 0.6 22 246-267 45-66 (287)
258 cd05059 PTKc_Tec_like Catalyti 32.0 21 0.00046 30.4 0.9 23 246-268 44-66 (256)
259 KOG0583|consensus 31.9 18 0.0004 33.8 0.5 18 250-267 68-86 (370)
260 cd05050 PTKc_Musk Catalytic do 31.8 20 0.00043 31.2 0.7 23 246-268 53-75 (288)
261 cd06630 STKc_MEKK1 Catalytic d 31.7 18 0.0004 30.8 0.5 24 246-269 48-71 (268)
262 KOG1169|consensus 31.7 22 0.00047 35.6 1.0 26 20-45 126-152 (634)
263 cd05090 PTKc_Ror1 Catalytic do 31.5 21 0.00045 31.0 0.8 22 247-268 53-74 (283)
264 cd05626 STKc_LATS2 Catalytic d 30.9 23 0.0005 32.7 1.0 23 247-269 47-69 (381)
265 cd05093 PTKc_TrkB Catalytic do 30.8 22 0.00047 31.0 0.8 21 247-267 53-73 (288)
266 PTZ00267 NIMA-related protein 30.7 22 0.00048 34.1 0.9 20 248-267 112-131 (478)
267 cd05036 PTKc_ALK_LTK Catalytic 30.7 22 0.00047 30.8 0.8 23 247-269 55-77 (277)
268 PF07935 SSV1_ORF_D-335: ORF D 30.6 1.3E+02 0.0028 21.4 4.4 44 110-177 6-49 (72)
269 cd07870 STKc_PFTAIRE2 Catalyti 30.6 21 0.00045 31.1 0.6 22 247-268 49-70 (291)
270 PF13824 zf-Mss51: Zinc-finger 30.6 24 0.00051 23.7 0.7 15 20-34 11-25 (55)
271 cd06607 STKc_TAO Catalytic dom 30.4 21 0.00046 31.5 0.7 21 247-267 61-81 (307)
272 KOG0588|consensus 30.4 20 0.00043 36.3 0.5 23 245-267 56-78 (786)
273 cd05060 PTKc_Syk_like Catalyti 30.4 22 0.00047 30.3 0.7 22 246-267 41-62 (257)
274 cd06628 STKc_MAPKKK_Byr2_like 30.3 23 0.0005 30.2 0.9 23 246-268 51-73 (267)
275 cd07876 STKc_JNK2 Catalytic do 30.2 21 0.00046 32.4 0.7 21 247-267 66-86 (359)
276 COG3357 Predicted transcriptio 30.2 28 0.0006 25.9 1.1 27 19-45 54-80 (97)
277 cd07842 STKc_CDK8_like Catalyt 30.0 23 0.0005 31.1 0.8 24 246-269 47-70 (316)
278 cd05600 STKc_Sid2p_Dbf2p Catal 30.0 26 0.00056 31.4 1.2 23 247-269 47-69 (333)
279 cd05608 STKc_GRK1 Catalytic do 30.0 24 0.00052 30.7 0.9 22 247-268 39-60 (280)
280 KOG0598|consensus 29.8 26 0.00055 32.7 1.1 21 249-269 73-93 (357)
281 cd05116 PTKc_Syk Catalytic dom 29.7 23 0.00049 30.3 0.7 23 245-267 40-62 (257)
282 cd05607 STKc_GRK7 Catalytic do 29.6 25 0.00054 30.6 1.0 22 248-269 40-61 (277)
283 cd07851 STKc_p38 Catalytic dom 29.6 62 0.0013 29.2 3.6 20 248-267 61-80 (343)
284 cd05112 PTKc_Itk Catalytic dom 29.6 23 0.0005 30.0 0.7 23 246-268 44-66 (256)
285 cd07878 STKc_p38beta_MAPK11 Ca 29.4 22 0.00047 32.0 0.6 20 248-267 61-80 (343)
286 PRK10345 hypothetical protein; 29.4 20 0.00044 30.7 0.3 22 246-267 41-67 (210)
287 KOG1769|consensus 29.3 2.2E+02 0.0049 21.5 5.8 48 164-225 41-92 (99)
288 cd07847 STKc_CDKL1_4 Catalytic 29.2 25 0.00054 30.3 0.9 21 247-267 46-66 (286)
289 cd07861 STKc_CDK1_euk Catalyti 29.1 24 0.00051 30.5 0.7 22 246-267 44-65 (285)
290 cd05091 PTKc_Ror2 Catalytic do 29.0 27 0.00059 30.2 1.1 22 246-267 53-74 (283)
291 cd05049 PTKc_Trk Catalytic dom 29.0 24 0.00052 30.3 0.8 24 246-269 53-76 (280)
292 cd07853 STKc_NLK Catalytic dom 29.0 23 0.00051 32.4 0.7 21 247-267 45-65 (372)
293 cd05605 STKc_GRK4_like Catalyt 28.9 24 0.00053 30.8 0.8 23 246-268 45-67 (285)
294 cd06643 STKc_SLK Catalytic dom 28.8 24 0.00051 30.6 0.7 22 246-267 47-68 (282)
295 cd08217 STKc_Nek2 Catalytic do 28.8 25 0.00055 29.6 0.8 22 246-267 44-65 (265)
296 cd05107 PTKc_PDGFR_beta Cataly 28.8 24 0.00053 33.2 0.8 21 247-267 86-107 (401)
297 cd07856 STKc_Sty1_Hog1 Catalyt 28.7 23 0.0005 31.9 0.6 22 247-268 55-76 (328)
298 cd05063 PTKc_EphR_A2 Catalytic 28.6 26 0.00056 30.0 0.9 23 247-269 52-74 (268)
299 cd07835 STKc_CDK1_like Catalyt 28.6 23 0.00049 30.6 0.5 24 245-268 42-65 (283)
300 cd05055 PTKc_PDGFR Catalytic d 28.5 26 0.00056 31.0 0.8 22 247-268 84-106 (302)
301 COG3677 Transposase and inacti 28.4 26 0.00057 27.7 0.8 13 21-33 51-63 (129)
302 cd05580 STKc_PKA Catalytic dom 28.4 27 0.00058 30.5 0.9 22 247-268 47-68 (290)
303 PF01363 FYVE: FYVE zinc finge 28.3 31 0.00068 23.6 1.1 21 18-38 20-40 (69)
304 cd05106 PTKc_CSF-1R Catalytic 28.2 25 0.00054 32.5 0.7 22 247-268 87-109 (374)
305 cd05632 STKc_GRK5 Catalytic do 28.1 27 0.0006 30.4 1.0 24 246-269 45-68 (285)
306 cd07849 STKc_ERK1_2_like Catal 27.9 26 0.00056 31.5 0.8 21 247-267 49-69 (336)
307 cd05631 STKc_GRK4 Catalytic do 27.8 27 0.00059 30.5 0.9 24 246-269 45-68 (285)
308 cd06624 STKc_ASK Catalytic dom 27.5 27 0.00059 29.9 0.8 21 247-267 51-71 (268)
309 cd07879 STKc_p38delta_MAPK13 C 27.5 26 0.00056 31.7 0.7 22 246-267 59-80 (342)
310 PF03811 Zn_Tnp_IS1: InsA N-te 27.4 31 0.00066 21.0 0.8 11 20-30 26-36 (36)
311 cd07874 STKc_JNK3 Catalytic do 27.3 25 0.00054 31.9 0.6 21 247-267 62-82 (355)
312 cd05579 STKc_MAST_like Catalyt 27.2 19 0.00041 30.4 -0.3 24 246-269 38-61 (265)
313 cd06635 STKc_TAO1 Catalytic do 27.1 27 0.00058 31.1 0.7 21 247-267 71-91 (317)
314 cd05032 PTKc_InsR_like Catalyt 27.1 27 0.00058 30.0 0.7 21 247-267 55-75 (277)
315 cd07840 STKc_CDK9_like Catalyt 27.1 24 0.00052 30.3 0.4 24 245-268 42-65 (287)
316 cd07855 STKc_ERK5 Catalytic do 27.1 26 0.00057 31.4 0.7 21 247-267 50-70 (334)
317 cd07850 STKc_JNK Catalytic dom 26.9 75 0.0016 28.7 3.7 21 247-267 61-81 (353)
318 cd07854 STKc_MAPK4_6 Catalytic 26.9 23 0.00049 32.0 0.2 23 246-268 47-69 (342)
319 cd08226 PK_STRAD_beta Pseudoki 26.7 30 0.00066 30.9 1.0 22 246-267 44-65 (328)
320 PHA00626 hypothetical protein 26.7 33 0.00071 23.2 0.9 17 21-37 21-37 (59)
321 cd05039 PTKc_Csk_like Catalyti 26.5 27 0.00059 29.6 0.6 22 247-268 46-67 (256)
322 cd06642 STKc_STK25-YSK1 Cataly 26.5 26 0.00057 30.2 0.5 22 247-268 48-69 (277)
323 cd07877 STKc_p38alpha_MAPK14 C 26.3 28 0.0006 31.6 0.7 21 247-267 62-82 (345)
324 cd06652 STKc_MEKK2 Catalytic d 26.2 30 0.00064 29.6 0.8 22 247-268 50-71 (265)
325 cd06613 STKc_MAP4K3_like Catal 26.1 30 0.00065 29.3 0.8 23 246-268 45-67 (262)
326 cd05625 STKc_LATS1 Catalytic d 26.1 30 0.00066 31.7 0.9 23 247-269 47-69 (382)
327 cd05594 STKc_PKB_alpha Catalyt 26.0 34 0.00073 30.6 1.2 23 247-269 41-63 (325)
328 cd06641 STKc_MST3 Catalytic do 25.9 29 0.00062 30.0 0.7 22 247-268 48-69 (277)
329 cd07841 STKc_CDK7 Catalytic do 25.8 30 0.00066 30.1 0.8 23 246-268 47-69 (298)
330 cd06620 PKc_MAPKK_Byr1_like Ca 25.7 28 0.00061 30.2 0.6 22 246-267 48-69 (284)
331 PTZ00024 cyclin-dependent prot 25.6 30 0.00065 30.9 0.8 21 247-267 66-86 (335)
332 cd07880 STKc_p38gamma_MAPK12 C 25.5 31 0.00068 31.2 0.9 21 247-267 60-80 (343)
333 cd06651 STKc_MEKK3 Catalytic d 25.5 31 0.00067 29.6 0.8 22 247-268 50-71 (266)
334 cd06646 STKc_MAP4K5 Catalytic 25.5 33 0.00072 29.3 1.0 23 247-269 52-74 (267)
335 cd06609 STKc_MST3_like Catalyt 25.3 31 0.00067 29.7 0.7 23 247-269 45-67 (274)
336 cd05629 STKc_NDR_like_fungal C 25.2 36 0.00077 31.2 1.2 22 247-268 47-68 (377)
337 cd06633 STKc_TAO3 Catalytic do 25.2 32 0.00069 30.6 0.8 22 247-268 67-88 (313)
338 cd07832 STKc_CCRK Catalytic do 25.2 29 0.00063 29.9 0.5 23 245-267 43-65 (286)
339 KOG0580|consensus 25.1 38 0.00081 30.2 1.2 23 244-266 65-87 (281)
340 cd08220 STKc_Nek8 Catalytic do 25.1 33 0.0007 28.9 0.8 21 247-267 45-65 (256)
341 cd05088 PTKc_Tie2 Catalytic do 25.0 32 0.00069 30.4 0.8 23 247-269 53-76 (303)
342 cd06629 STKc_MAPKKK_Bck1_like 25.0 32 0.0007 29.5 0.8 23 247-269 54-76 (272)
343 cd05048 PTKc_Ror Catalytic Dom 24.9 34 0.00073 29.5 0.9 23 246-268 53-75 (283)
344 cd06640 STKc_MST4 Catalytic do 24.8 33 0.00071 29.7 0.8 24 246-269 47-70 (277)
345 cd05100 PTKc_FGFR3 Catalytic d 24.8 28 0.00061 31.2 0.4 23 246-268 62-85 (334)
346 cd05094 PTKc_TrkC Catalytic do 24.6 38 0.00081 29.6 1.2 24 246-269 52-75 (291)
347 cd06622 PKc_MAPKK_PBS2_like Ca 24.5 26 0.00057 30.3 0.1 23 246-268 44-66 (286)
348 PF00630 Filamin: Filamin/ABP2 24.5 70 0.0015 23.2 2.5 29 105-138 65-93 (101)
349 cd08225 STKc_Nek5 Catalytic do 24.3 32 0.00069 29.0 0.6 23 246-268 44-66 (257)
350 cd05598 STKc_LATS Catalytic do 24.3 37 0.0008 31.0 1.1 23 246-268 46-68 (376)
351 PF07754 DUF1610: Domain of un 24.3 38 0.00083 18.7 0.7 11 21-31 14-24 (24)
352 cd08216 PK_STRAD Pseudokinase 24.2 31 0.00067 30.4 0.6 21 247-267 45-65 (314)
353 smart00249 PHD PHD zinc finger 24.1 48 0.001 20.0 1.3 19 23-41 14-32 (47)
354 cd05061 PTKc_InsR Catalytic do 24.1 35 0.00076 29.7 0.9 22 247-268 55-76 (288)
355 cd06612 STKc_MST1_2 Catalytic 24.1 31 0.00068 29.1 0.5 23 245-267 42-64 (256)
356 cd07846 STKc_CDKL2_3 Catalytic 24.0 26 0.00056 30.2 0.0 24 245-268 44-67 (286)
357 cd05596 STKc_ROCK Catalytic do 23.9 39 0.00084 31.1 1.2 21 248-268 90-110 (370)
358 KOG4718|consensus 23.9 25 0.00055 30.3 -0.1 22 17-38 188-209 (235)
359 cd05609 STKc_MAST Catalytic do 23.8 37 0.0008 29.9 1.0 23 247-269 47-69 (305)
360 PF09237 GAGA: GAGA factor; I 23.8 34 0.00074 22.7 0.5 24 14-37 15-38 (54)
361 COG3168 PilP Tfp pilus assembl 23.7 60 0.0013 26.7 2.1 47 70-116 75-125 (170)
362 cd05047 PTKc_Tie Catalytic dom 23.7 34 0.00074 29.4 0.7 23 246-268 40-63 (270)
363 cd05111 PTK_HER3 Pseudokinase 23.6 38 0.00081 29.4 1.0 22 247-268 55-76 (279)
364 cd06653 STKc_MEKK3_like_1 Cata 23.6 36 0.00078 29.1 0.8 22 247-268 50-71 (264)
365 cd07833 STKc_CDKL Catalytic do 23.6 34 0.00074 29.5 0.7 23 246-268 45-67 (288)
366 cd05092 PTKc_TrkA Catalytic do 23.2 39 0.00085 29.3 1.0 22 247-268 53-74 (280)
367 KOG1829|consensus 23.1 22 0.00047 35.4 -0.7 21 23-43 531-551 (580)
368 cd05621 STKc_ROCK2 Catalytic d 23.1 37 0.00081 31.3 0.9 21 248-268 90-110 (370)
369 smart00064 FYVE Protein presen 23.1 42 0.00091 22.8 0.9 22 18-39 21-42 (68)
370 cd08218 STKc_Nek1 Catalytic do 22.9 37 0.0008 28.7 0.8 23 246-268 44-66 (256)
371 cd08530 STKc_CNK2-like Catalyt 22.9 33 0.00072 28.8 0.5 22 247-268 45-66 (256)
372 COG1571 Predicted DNA-binding 22.8 39 0.00085 32.3 0.9 15 22-36 366-380 (421)
373 cd05572 STKc_cGK_PKG Catalytic 22.6 37 0.00081 28.8 0.7 23 246-268 38-60 (262)
374 cd06647 STKc_PAK_I Catalytic d 22.5 37 0.0008 29.8 0.7 21 247-267 62-82 (293)
375 cd05079 PTKc_Jak1_rpt2 Catalyt 22.3 39 0.00085 29.3 0.8 23 246-268 51-73 (284)
376 PRK11823 DNA repair protein Ra 22.3 50 0.0011 31.7 1.6 26 21-47 5-30 (446)
377 cd06631 STKc_YSK4 Catalytic do 22.2 39 0.00084 28.8 0.8 23 247-269 48-70 (265)
378 cd05041 PTKc_Fes_like Catalyti 22.1 41 0.00089 28.3 0.9 22 246-267 37-58 (251)
379 cd07875 STKc_JNK1 Catalytic do 22.0 39 0.00084 30.8 0.7 21 247-267 69-89 (364)
380 cd06654 STKc_PAK1 Catalytic do 22.0 40 0.00088 29.6 0.9 21 247-267 63-83 (296)
381 cd05622 STKc_ROCK1 Catalytic d 21.8 45 0.00098 30.7 1.2 22 248-269 90-111 (371)
382 cd05599 STKc_NDR_like Catalyti 21.8 43 0.00094 30.4 1.0 22 247-268 47-68 (364)
383 PF06397 Desulfoferrod_N: Desu 21.7 37 0.00081 20.7 0.4 13 21-33 4-16 (36)
384 TIGR00416 sms DNA repair prote 21.7 49 0.0011 32.0 1.4 26 21-47 5-30 (454)
385 cd05053 PTKc_FGFR Catalytic do 21.7 37 0.00081 29.5 0.6 21 247-267 61-82 (293)
386 cd01121 Sms Sms (bacterial rad 21.6 45 0.00097 31.3 1.1 23 24-47 1-23 (372)
387 cd05577 STKc_GRK Catalytic dom 21.6 43 0.00094 28.9 1.0 23 246-268 38-60 (277)
388 cd00065 FYVE FYVE domain; Zinc 21.5 50 0.0011 21.5 1.0 23 18-40 13-35 (57)
389 cd06645 STKc_MAP4K3 Catalytic 21.4 44 0.00095 28.5 1.0 23 247-269 52-74 (267)
390 cd06648 STKc_PAK_II Catalytic 21.4 42 0.00091 29.3 0.8 22 247-268 62-83 (285)
391 cd06634 STKc_TAO2 Catalytic do 21.3 42 0.00092 29.7 0.8 21 247-267 61-81 (308)
392 cd08219 STKc_Nek3 Catalytic do 21.2 40 0.00087 28.5 0.7 23 246-268 43-65 (255)
393 cd06632 STKc_MEKK1_plant Catal 21.0 42 0.0009 28.3 0.7 23 247-269 48-70 (258)
394 cd07829 STKc_CDK_like Catalyti 20.9 34 0.00074 29.3 0.1 25 244-268 41-65 (282)
395 COG1066 Sms Predicted ATP-depe 20.9 60 0.0013 31.1 1.7 24 22-46 6-29 (456)
396 cd06614 STKc_PAK Catalytic dom 20.9 39 0.00085 29.3 0.5 22 246-267 60-81 (286)
397 cd05038 PTKc_Jak_rpt2 Catalyti 20.8 42 0.00091 28.8 0.7 22 246-267 51-72 (284)
398 cd06638 STKc_myosinIIIA Cataly 20.2 73 0.0016 27.4 2.1 21 247-267 60-81 (286)
399 PF07295 DUF1451: Protein of u 20.2 65 0.0014 26.1 1.6 24 23-46 112-138 (146)
400 smart00219 TyrKc Tyrosine kina 20.0 42 0.0009 28.2 0.5 22 246-267 46-67 (258)
No 1
>KOG2996|consensus
Probab=100.00 E-value=1.7e-55 Score=408.93 Aligned_cols=234 Identities=31% Similarity=0.581 Sum_probs=207.7
Q ss_pred hheehhcccCCCceecCcCCcchhcccccCCCCCCCC--------------------------CCCCCCC--------CC
Q psy3210 11 ISIVTLKSRGLRPLCSQACYLACHKQCIPHTGRCGTG--------------------------VPLPAMS--------PR 56 (272)
Q Consensus 11 ~~~~~~~g~~~qg~~c~~c~~~~h~~c~~~~~~C~~~--------------------------~~~p~~~--------pp 56 (272)
.-.|||||+|||||.|.+||+.+||+|+++++.|++. +|+|+|. ||
T Consensus 539 vC~mllrGtfYQGY~C~~c~~~ahkecl~~vp~cgr~~q~~~Gt~k~~~k~~~~~r~t~~rn~~GLpkm~~vq~ysg~p~ 618 (865)
T KOG2996|consen 539 VCQMLLRGTFYQGYKCEKCGADAHKECLGRVPPCGRYLQFAKGTRKEVIKMTGHNRFTNKRNRPGLPKMDVVQNYSGIPP 618 (865)
T ss_pred HHHHHhhhhhhcceeeeeccccHHHHhccCCCCcccccccCCcchhhhhhhcCccccccccCCCCCcchhhhhccCCCCC
Confidence 3579999999999999999999999999999999543 4678885 55
Q ss_pred CC-----cccccCCCCC------------------CCCcceeecCccC------------cCCcccccEeeeeCCHHHHH
Q psy3210 57 PP-----LMDIAGAAQP------------------LGGNEWTAKSWAD------------HENLSEYLWFVGEMGREKAT 101 (272)
Q Consensus 57 pp-----~~~~~~~~~~------------------~~~~g~~P~~~~~------------~~~l~~~~Wf~g~isR~~Ae 101 (272)
|| ++.++.||.+ .+..||+|++..+ +.+++.++||.|.|.|.+||
T Consensus 619 Pag~igP~l~~~~gdvlel~~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vpr~~~~~~~d~s~~~WyaG~MERaqae 698 (865)
T KOG2996|consen 619 PAGSIGPRLVLQEGDVLELLKGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVPRQQDYVPTDYSEFPWYAGEMERAQAE 698 (865)
T ss_pred CCccCCCceEecCCceeehhcCCCCCcccccCCccCCccCCCCccccCcCCCCCCCCCCCccchhhhhhhcchHhhhhhh
Confidence 54 6778888833 1337888888522 56788899999999999999
Q ss_pred HhcccCCCceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEecCCCcceEEeecccccchhhhhhhhhhccccccc
Q psy3210 102 SLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIEN 181 (272)
Q Consensus 102 ~lL~~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~~g~~~~~~i~~~~~F~sL~eLV~~y~~~~L~~~ 181 (272)
..|+++++|+||||.+... ...|+||++++..|+|++|.+.+ | +|+|.+.+.|.|+.|||+||+.|+|.+.
T Consensus 699 s~Lk~~~ngT~LVR~r~ke-----a~e~AISikynnevKHikI~~~d-g---~~~i~E~k~F~sl~ELVeyYq~~sLke~ 769 (865)
T KOG2996|consen 699 STLKNRPNGTYLVRYRTKE-----AKEFAISIKYNNEVKHIKIETND-G---KVHITEDKKFNSLVELVEYYQSHSLKEI 769 (865)
T ss_pred hHhhcCCCceEEEEecccc-----hhheeEEEEeccccceEEEEecC-C---eEEechhhhhhhHHHHHHHHHhccHHHH
Confidence 9999999999999999754 58999999999999999999985 4 9999999999999999999999999999
Q ss_pred ccccccccccccee----------------------eeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCC
Q psy3210 182 FIGLNVRLQLPFRQ----------------------IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDE 239 (272)
Q Consensus 182 ~~~l~~~L~~P~~~----------------------~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g 239 (272)
|..|+++|+.|++. ..|+|.|||.+.+..||||++||+|.++++.|++.|||+|+++|
T Consensus 770 Fk~LDTtLk~Pyke~e~sa~~~~~~~~~sv~s~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevng 849 (865)
T KOG2996|consen 770 FKALDTTLKFPYKEPEHSAGQRGNRAGNSVLSPKVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNG 849 (865)
T ss_pred HHHhhhhhcCCCcChhhhhhhccccccccccCcceeeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecC
Confidence 99999999999962 25789999999999999999999999999999989999999999
Q ss_pred eeeeeeccchhhhh
Q psy3210 240 RVSYFFQLYWGNFR 253 (272)
Q Consensus 240 ~~G~fP~~yVeE~~ 253 (272)
++||||++||+|-.
T Consensus 850 rvGwFPstYVee~~ 863 (865)
T KOG2996|consen 850 RVGWFPSTYVEEDD 863 (865)
T ss_pred cccccccccccccC
Confidence 99999999999854
No 2
>KOG4278|consensus
Probab=99.96 E-value=8e-30 Score=241.30 Aligned_cols=183 Identities=18% Similarity=0.339 Sum_probs=146.9
Q ss_pred CcceeecCcc-CcCCcccccEeeeeCCHHHHHHhcccCCCceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEecC
Q psy3210 71 GNEWTAKSWA-DHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEM 149 (272)
Q Consensus 71 ~~g~~P~~~~-~~~~l~~~~Wf~g~isR~~Ae~lL~~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~~ 149 (272)
++||||+||+ ...+|+.+.||||.++|..||.+|...-.|+||||+|++. ++.|+||++++++|+||+|....+
T Consensus 134 GqGWVPSNyItPvNSLeKhsWYHGpvSRsaaEy~LsSgInGSFLVRESEsS-----pgQ~sISlRyeGRVyHYRINt~~d 208 (1157)
T KOG4278|consen 134 GQGWVPSNYITPVNSLEKHSWYHGPVSRSAAEYILSSGINGSFLVRESESS-----PGQYSISLRYEGRVYHYRINTDND 208 (1157)
T ss_pred CCccccccccccccchhhcccccCccccchhhhhhhcCcccceEEeeccCC-----CcceeEEEEecceEEEEEeeccCC
Confidence 4799999994 4679999999999999999999999888899999999855 599999999999999999999888
Q ss_pred CCcceEEeecccccchhhhhhhhhhccccccccccccccccccceeeeeeeeccCCCCCCCCCccCCCcEEEE----eee
Q psy3210 150 DGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQIIAVAEFDFCPTEANQLPLKQGCQVIV----LSK 225 (272)
Q Consensus 150 g~~~~~~i~~~~~F~sL~eLV~~y~~~~L~~~~~~l~~~L~~P~~~~~~~alydf~~~~~~ELsl~~Gd~i~v----~~k 225 (272)
| +.|+.....|.+|.|||.||++.+ ++|-+.|.+|..+.--..+|.-.+.. |++.+.+-||+.- -++
T Consensus 209 g---K~yvt~EsrF~TLaELVHHHStvA-----DGLittLhYPApK~nKptvygvSPn~-DkWEmeRtdItMkhKLGGGQ 279 (1157)
T KOG4278|consen 209 G---KMYVTQESRFRTLAELVHHHSTVA-----DGLITTLHYPAPKKNKPTVYGVSPNA-DKWEMERTDITMKHKLGGGQ 279 (1157)
T ss_pred c---cEEEeehhhhhHHHHHHhhccccc-----cceeEeeeccCccCCCCceeeecCCc-chhhccchheeeeeccCCCc
Confidence 7 777777778999999999999998 99999999999643222244333322 4444444444311 235
Q ss_pred eCCc-CCeEEEEeC-------CeeeeeeccchhhhhhhccCCCCCcccce
Q psy3210 226 EGEQ-KGWWKGKID-------ERVSYFFQLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 226 ~ge~-~gwW~G~~~-------g~~G~fP~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.||+ .|.|+...- +...|--.+|++||.+||.+.|||||||.
T Consensus 280 YGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpNLVqLL 329 (1157)
T KOG4278|consen 280 YGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLL 329 (1157)
T ss_pred ccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCccHHHHh
Confidence 5655 888986432 46677778999999999999999999996
No 3
>KOG1264|consensus
Probab=99.95 E-value=6.1e-28 Score=231.97 Aligned_cols=157 Identities=28% Similarity=0.573 Sum_probs=131.2
Q ss_pred cCcCCcccccEeeeeCCHHHHHHhccc-CCCceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEecCCCcceEEee
Q psy3210 80 ADHENLSEYLWFVGEMGREKATSLLER-EADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLS 158 (272)
Q Consensus 80 ~~~~~l~~~~Wf~g~isR~~Ae~lL~~-~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~~g~~~~~~i~ 158 (272)
+.+..+++++|||...+|++||++|.. ..||+||||.++ ..+.|+||++.+++|+|++|.++.. .|.++
T Consensus 640 Pqp~~He~k~W~~as~treqAE~mL~rvp~DGaFLiR~~~------~~nsy~iSfr~~gkikHcRi~rdGr----~fvl~ 709 (1267)
T KOG1264|consen 640 PQPNPHESKPWYHASLTREQAEDMLMRVPRDGAFLIRKRE------GSNSYAISFRARGKIKHCRINRDGR----HFVLG 709 (1267)
T ss_pred CCCCcccCCccccccccHHHHHHHHhhCccCcceEEEecc------CCceEEEEEEEcCcEeEEEEccCce----EEEec
Confidence 345788999999999999999999976 567999999653 3589999999999999999988643 56666
Q ss_pred cccccchhhhhhhhhhccccccccccccccccccc----------------------------------eeeeeeeeccC
Q psy3210 159 QSRYFRSIVELICCYERNSLIENFIGLNVRLQLPF----------------------------------RQIIAVAEFDF 204 (272)
Q Consensus 159 ~~~~F~sL~eLV~~y~~~~L~~~~~~l~~~L~~P~----------------------------------~~~~~~alydf 204 (272)
.. .|+||++||+||.+++|.+... |.+|+ ++..++|+|||
T Consensus 710 t~-~FesLv~lv~yY~k~~lyR~mk-----Lr~PVnee~l~~~~~e~d~~a~~d~~r~pg~yme~n~~~~~vt~kAL~~Y 783 (1267)
T KOG1264|consen 710 TS-AFESLVELVSYYEKHPLYRKMK-----LRYPVNEELLERYNTERDINALYDVSRMPGDYMEINPSMPQVTVKALYDY 783 (1267)
T ss_pred cH-HHHHHHHHHHHHhcChhhhccc-----ccCcCCHHHHHHhhhhcccccccccccCCCCccccCccccchhhhhhhcc
Confidence 55 5999999999999999875432 22222 12468899999
Q ss_pred CCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCe-eeeeeccchhhhhh
Q psy3210 205 CPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDER-VSYFFQLYWGNFRL 254 (272)
Q Consensus 205 ~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~-~G~fP~~yVeE~~~ 254 (272)
.+...|||+|.+|.+|+++.+.. .|||+|++.|+ .+|||+|||+|+-.
T Consensus 784 ka~r~DELSFpk~aiItnv~kee--g~wWrGdYGg~iq~wfPsnyVeei~~ 832 (1267)
T KOG1264|consen 784 KAKRSDELSFPKGAIITNVSKEE--GGWWRGDYGGRIQQWFPSNYVEEIST 832 (1267)
T ss_pred ccCCcccccccccceeEeeeccC--CceeecccccceeeeccHHHhhhhcc
Confidence 99999999999999999998776 68999999975 58999999998754
No 4
>KOG4792|consensus
Probab=99.94 E-value=4e-27 Score=198.03 Aligned_cols=156 Identities=22% Similarity=0.405 Sum_probs=129.3
Q ss_pred CCcccccEeeeeCCHHHHHHhcccCCCceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEecCCC-c---ceEEee
Q psy3210 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDG-V---PQYFLS 158 (272)
Q Consensus 83 ~~l~~~~Wf~g~isR~~Ae~lL~~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~~g~-~---~~~~i~ 158 (272)
+..+...||+|.|+|+||..+|.+...|+||||+|... +|.|+|||+++.+|.||.|.+..-.. + ..|.|+
T Consensus 6 D~~er~swYfg~mSRqeA~~lL~~~r~G~FLvRDSst~-----pGdYvLsV~E~srVshYiIn~~~p~~~~~~~~~~rIg 80 (293)
T KOG4792|consen 6 DSSERSSWYFGPMSRQEAVALLQGQRHGVFLVRDSSTS-----PGDYVLSVSENSRVSHYIINSSPPSPAQPPPSRLRIG 80 (293)
T ss_pred ChhhccceecCcccHHHHHHHhcCcceeeEEEecCCCC-----CCceEEEEecCcceeeeeecCCCCCccCCCcceeeec
Confidence 34455689999999999999999988999999999754 69999999999999999998732210 1 158998
Q ss_pred cccccchhhhhhhhhhccccccccccccccccccce--------------eeeeeeeccCCCCCCCCCccCCCcEEEEee
Q psy3210 159 QSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFR--------------QIIAVAEFDFCPTEANQLPLKQGCQVIVLS 224 (272)
Q Consensus 159 ~~~~F~sL~eLV~~y~~~~L~~~~~~l~~~L~~P~~--------------~~~~~alydf~~~~~~ELsl~~Gd~i~v~~ 224 (272)
+.. |++|+.|++||+.+-|. .++|..|++ ...++|+|||.+.+.++|.|++||+++|+.
T Consensus 81 dQ~-Fd~lPaLL~fykihyLd------tttLi~p~~r~~~~~~~~~~~~~~~~vr~~fdF~G~deeDLPFkkGeiL~I~~ 153 (293)
T KOG4792|consen 81 DQE-FDSLPALLEFYKIHYLD------TTTLIEPAKRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGEILRIRD 153 (293)
T ss_pred ccc-ccchHHHHhheeEeeec------cccccccccccccccCcccchhhhhheeeeeccCCCccccCCcccCcEEEEec
Confidence 885 99999999999987652 344555543 235778999999999999999999999999
Q ss_pred eeCCcCCeEEEEeC-Ceeeeeeccchhhh
Q psy3210 225 KEGEQKGWWKGKID-ERVSYFFQLYWGNF 252 (272)
Q Consensus 225 k~ge~~gwW~G~~~-g~~G~fP~~yVeE~ 252 (272)
|.. +.||..+.. |++|++|.+||+..
T Consensus 154 K~e--eqWW~Arns~Gk~GmIPvpYVe~~ 180 (293)
T KOG4792|consen 154 KPE--EQWWNARNSEGKRGMIPVPYVEKY 180 (293)
T ss_pred CcH--HHhhhhhccCCcccceechHHHhh
Confidence 887 459999875 99999999999954
No 5
>KOG0197|consensus
Probab=99.94 E-value=2.5e-27 Score=221.45 Aligned_cols=183 Identities=23% Similarity=0.381 Sum_probs=147.5
Q ss_pred CCCcceeecCccCc-------CCcccccEeeeeCCHHHHHHhccc--CCCceEEEEeCCCCCCCCCCCceEEEEeeCC--
Q psy3210 69 LGGNEWTAKSWADH-------ENLSEYLWFVGEMGREKATSLLER--EADGTYLLRIRPQGPTHPNETIYALSLKTDE-- 137 (272)
Q Consensus 69 ~~~~g~~P~~~~~~-------~~l~~~~Wf~g~isR~~Ae~lL~~--~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~-- 137 (272)
++.+|++|+|+... .+++.++||+|.|+|++||+.|.. ...|+||||+|++ .++.|+||++...
T Consensus 55 ~~~~g~ip~N~v~~~~~~~~~~~l~~~~Wf~~~isR~~ae~~ll~p~~~~G~flvR~se~-----~~g~yslsv~~~~~~ 129 (468)
T KOG0197|consen 55 LGQEGYIPSNYVARNRGSPAFIKLSDEPWFFGKISREEAERQLLAPENKEGAFLVRESES-----DKGDYSLSVREGDSG 129 (468)
T ss_pred cCCCCcCcCceeeccccCCCccccccCCchhccccHHHHHHhhcCCCCCccceeeecccC-----CcCCeeEEEEecccc
Confidence 35689999999443 789999999999999999987755 4569999999974 4799999999965
Q ss_pred ----eeeEEEEEEecCCCcceEE--eecccccchhhhhhhhhhccccccccccccccccccceee----eeee-e-ccCC
Q psy3210 138 ----KVKHMKVYEKEMDGVPQYF--LSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQI----IAVA-E-FDFC 205 (272)
Q Consensus 138 ----~v~H~~I~~~~~g~~~~~~--i~~~~~F~sL~eLV~~y~~~~L~~~~~~l~~~L~~P~~~~----~~~a-l-ydf~ 205 (272)
.|+||+|...+++ .++ +.....|++|.+||+||+.++ +++++.|..|+... ...+ + +|-+
T Consensus 130 ~~~~~v~hyri~~~~~~---~~~~~~~~~~~F~~l~~lv~~~~~~~-----~gl~~~l~~p~~~~~~~~p~~~~~~~d~w 201 (468)
T KOG0197|consen 130 GLGAKVKHYRIRQLDGG---GLYPYIDERELFSSLQQLVNYYSKNA-----DGLCTRLRDPCSKQGHTKPQTPDLARDPW 201 (468)
T ss_pred CCccceeeeeeeEcCCC---CeecCCCHHHhhhhHHHHHhhhhccC-----cchhhcccCchhccCCCCCCCCccccCCe
Confidence 8999999998876 455 888889999999999999999 79999999998531 2222 1 4445
Q ss_pred CCCCCCCccCCCcEEEEeeeeCCc-CCeEEEEeC------CeeeeeeccchhhhhhhccCCCCCcccce
Q psy3210 206 PTEANQLPLKQGCQVIVLSKEGEQ-KGWWKGKID------ERVSYFFQLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 206 ~~~~~ELsl~~Gd~i~v~~k~ge~-~gwW~G~~~------g~~G~fP~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..++++|.|.+ ++ +.+.||++ .|+|+|... ....+.|..|++||++||+|+|+|||||.
T Consensus 202 ei~r~~l~l~~-~L--G~G~FG~V~~g~~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~lV~l~ 267 (468)
T KOG0197|consen 202 EIPREELKLIR-EL--GSGQFGEVWLGKWNGSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEKLVKLY 267 (468)
T ss_pred eecHHHHHHHH-Hh--cCCccceEEEEEEcCCCcccceEEeccccChhHHHHHHHHHHhCcccCeEEEE
Confidence 55678888764 22 45678876 888988854 13357789999999999999999999985
No 6
>KOG3601|consensus
Probab=99.92 E-value=6.1e-26 Score=189.47 Aligned_cols=172 Identities=26% Similarity=0.367 Sum_probs=148.5
Q ss_pred CCCcceeecCccCcCCcccccEeeeeCCHHHHHHhcccCCCceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEec
Q psy3210 69 LGGNEWTAKSWADHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148 (272)
Q Consensus 69 ~~~~g~~P~~~~~~~~l~~~~Wf~g~isR~~Ae~lL~~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~ 148 (272)
.+.+|++|+|+ .....+.||+|.++|..||++|....+|+||+|.++.. ++.|++|++....|.|+++.+..
T Consensus 42 ~g~~g~~P~Na---i~~~~~~wve~~i~r~~ae~~l~~~~~G~fl~r~s~sS-----Pg~fsgsvr~~d~vqhfkvvrpa 113 (222)
T KOG3601|consen 42 DGPEGFIPKNA---IRMKPHEWVEGLIPRPLAEDLLSKKRDGDFLIRLSESS-----PGDFSGSVRFPDGVQHFKVVRPA 113 (222)
T ss_pred cCccccCcccc---cccccccceecccccchhhhhhhccCcchhhhhhhhcC-----cccccccccCCCCceeccccccC
Confidence 57799999999 66677899999999999999998899999999999865 59999999999999999999887
Q ss_pred CCCcceEEeecccccchhhhhhhhhhcccccccccccc-------ccccccceeeeeeeeccCCCCCCCCCccCCCcEEE
Q psy3210 149 MDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLN-------VRLQLPFRQIIAVAEFDFCPTEANQLPLKQGCQVI 221 (272)
Q Consensus 149 ~g~~~~~~i~~~~~F~sL~eLV~~y~~~~L~~~~~~l~-------~~L~~P~~~~~~~alydf~~~~~~ELsl~~Gd~i~ 221 (272)
.+ +|+++..+ |.++.+|++||.+++...+.+... .++..|.....+.|+|||.+.++.|+.|++||+|+
T Consensus 114 ~~---k~~lw~sk-fnslnplv~Y~rt~s~~r~~qi~l~d~~~~~~~~~~~~~~~yqQa~~df~~~pp~ql~f~~gq~~~ 189 (222)
T KOG3601|consen 114 FG---KYFLWSSK-FNSLNPLVSYHRTASQSRNQQIFLRDMEPPPAPLPPAPTNYYQQALYDFQPQPPGQLAFRRGQQIQ 189 (222)
T ss_pred cc---ccccchhh-ccCCCCCcccCcccccccceeeeecccccccccCCCCccchhhhhcCCCCCCCchhhccccCCcce
Confidence 76 89998765 999999999999988765433221 22344455677899999999999999999999999
Q ss_pred EeeeeCCcCCeEEEEeCCeeeeeeccchhhhhh
Q psy3210 222 VLSKEGEQKGWWKGKIDERVSYFFQLYWGNFRL 254 (272)
Q Consensus 222 v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~~~ 254 (272)
|+++.+ .-||.|...|+.|+||++||..+.+
T Consensus 190 v~~~ss--~~ww~Gs~lg~agiFpagyv~p~d~ 220 (222)
T KOG3601|consen 190 VLDSSS--PFWWFGSKLGRAGIFPAGYVAPSDL 220 (222)
T ss_pred eecCCC--cchhhccccCceeeecCcccccccc
Confidence 998877 6799999999999999999986543
No 7
>smart00252 SH2 Src homology 2 domains. Src homology 2 domains bind phosphotyrosine-containing polypeptides via 2 surface pockets. Specificity is provided via interaction with residues that are distinct from the phosphotyrosine. Only a single occurrence of a SH2 domain has been found in S. cerevisiae.
Probab=99.84 E-value=8.3e-21 Score=140.20 Aligned_cols=83 Identities=37% Similarity=0.650 Sum_probs=75.1
Q ss_pred ccEeeeeCCHHHHHHhcccCCCceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEecCCCcceEEeecccccchhh
Q psy3210 88 YLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIV 167 (272)
Q Consensus 88 ~~Wf~g~isR~~Ae~lL~~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~~g~~~~~~i~~~~~F~sL~ 167 (272)
++||||.|+|++||++|.+.++|+||||.|++. ++.|+||++.++.++|++|...+++ .|++.....|+||.
T Consensus 1 ~~w~~g~i~r~~Ae~lL~~~~~G~FLvR~s~~~-----~~~~~Lsv~~~~~~~h~~I~~~~~~---~~~l~~~~~F~sl~ 72 (84)
T smart00252 1 QPWYHGFISREEAEKLLKNEGDGDFLVRDSESE-----PGDYVLSVRVKGKVKHYRIRRNEDG---KFYLDGGRKFPSLV 72 (84)
T ss_pred CCeecccCCHHHHHHHHhcCCCcEEEEEcCCCC-----CCCEEEEEEECCEEEEEEEEECCCC---cEEECCCCccCCHH
Confidence 489999999999999999888999999999743 5899999999999999999988755 79998877899999
Q ss_pred hhhhhhhcccc
Q psy3210 168 ELICCYERNSL 178 (272)
Q Consensus 168 eLV~~y~~~~L 178 (272)
|||+||+.+++
T Consensus 73 eLI~~y~~~~~ 83 (84)
T smart00252 73 ELVEHYQKNSL 83 (84)
T ss_pred HHHHHHhhCCC
Confidence 99999998874
No 8
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=99.84 E-value=1.2e-20 Score=141.82 Aligned_cols=94 Identities=37% Similarity=0.658 Sum_probs=79.9
Q ss_pred cEeeeeCCHHHHHHhcccCCCceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEecCCCcceEEeecccccchhhh
Q psy3210 89 LWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVE 168 (272)
Q Consensus 89 ~Wf~g~isR~~Ae~lL~~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~~g~~~~~~i~~~~~F~sL~e 168 (272)
+||||.|+|++||++|...++|+||||.|++ .++.|+||++.+++++|++|...+++ .+.......|+||.|
T Consensus 1 ~w~~g~i~r~~Ae~~L~~~~~G~FLiR~s~~-----~~~~~~Lsv~~~~~v~H~~I~~~~~~---~~~~~~~~~f~sl~e 72 (94)
T cd00173 1 PWYHGPISREEAEELLKKKPDGTFLVRDSES-----SPGDYVLSVRVKGKVKHYRIERTDDG---YYLLGEGRSFPSLPE 72 (94)
T ss_pred CccccCCCHHHHHHHHhcCCCceEEEEecCC-----CCCCEEEEEEECCEEEEEEEEECCCC---eEEecCCCccCCHHH
Confidence 6999999999999999988999999999974 35899999999999999999998775 444443668999999
Q ss_pred hhhhhhccccccccccccccccccc
Q psy3210 169 LICCYERNSLIENFIGLNVRLQLPF 193 (272)
Q Consensus 169 LV~~y~~~~L~~~~~~l~~~L~~P~ 193 (272)
||+||+.+++ ...+...|..|+
T Consensus 73 Lv~~y~~~~~---~~~~~~~L~~p~ 94 (94)
T cd00173 73 LIEHYQKNPL---SDGLGVKLRYPV 94 (94)
T ss_pred HHHHHhhCcc---CCCcccEeCCcC
Confidence 9999999986 245667777664
No 9
>PF00017 SH2: SH2 domain; InterPro: IPR000980 The Src homology 2 (SH2) domain is a protein domain of about 100 amino-acid residues first identified as a conserved sequence region between the oncoproteins Src and Fps []. Similar sequences were later found in many other intracellular signal-transducing proteins []. SH2 domains function as regulatory modules of intracellular signalling cascades by interacting with high affinity to phosphotyrosine-containing target peptides in a sequence-specific, SH2 domains recognise between 3-6 residues C-terminal to the phosphorylated tyrosine in a fashion that differs from one SH2 domain to another, and strictly phosphorylation-dependent manner [, , , ]. They are found in a wide variety of protein contexts e.g., in association with catalytic domains of phospholipase Cy (PLCy) and the non-receptor protein tyrosine kinases; within structural proteins such as fodrin and tensin; and in a group of small adaptor molecules, i.e Crk and Nck. The domains are frequently found as repeats in a single protein sequence and will then often bind both mono- and di-phosphorylated substrates. The structure of the SH2 domain belongs to the alpha+beta class, its overall shape forming a compact flattened hemisphere. The core structural elements comprise a central hydrophobic anti-parallel beta-sheet, flanked by 2 short alpha-helices. The loop between strands 2 and 3 provides many of the binding interactions with the phosphate group of its phosphopeptide ligand, and is hence designated the phosphate binding loop, the phosphorylated ligand binds perpendicular to the beta-sheet and typically interacts with the phosphate binding loop and a hydrophobic binding pocket that interacts with a pY+3 side chain. The N- and C-termini of the domain are close together in space and on the opposite face from the phosphopeptide binding surface and it has been speculated that this has facilitated their integration into surface-exposed regions of host proteins [].; GO: 0005515 protein binding; PDB: 1M27_A 1KA6_A 1D4W_B 1D4T_A 1D1Z_B 1KA7_A 1UUR_A 1UUS_A 1BLJ_A 1BLK_A ....
Probab=99.82 E-value=4.5e-20 Score=134.10 Aligned_cols=76 Identities=38% Similarity=0.681 Sum_probs=70.6
Q ss_pred EeeeeCCHHHHHHhccc-CCCceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEecCCCcceEEeecccccchhhh
Q psy3210 90 WFVGEMGREKATSLLER-EADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVE 168 (272)
Q Consensus 90 Wf~g~isR~~Ae~lL~~-~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~~g~~~~~~i~~~~~F~sL~e 168 (272)
||||.|+|++||++|.. .++|+||||.|.+. ++.|+||++.+++|+|++|...+++ .|++.+...|+||.+
T Consensus 1 W~~g~isr~~Ae~~L~~~~~~G~FLvR~s~~~-----~~~~~Lsv~~~~~v~h~~I~~~~~~---~~~~~~~~~F~sl~~ 72 (77)
T PF00017_consen 1 WFHGFISRQEAERLLMQGKPDGTFLVRPSSSK-----PGKYVLSVRFDGKVKHFRINRTENG---GYFLSDGKKFPSLSD 72 (77)
T ss_dssp TBEESSHHHHHHHHHHTTSSTTEEEEEEESSS-----TTSEEEEEEETTEEEEEEEEEETTS---EEESSTSSEBSSHHH
T ss_pred CcCCCCCHHHHHHHHHhcCCCCeEEEEecccc-----ccccccccccccccEEEEEEecCCc---eEEccCCCcCCCHHH
Confidence 99999999999999998 89999999999743 5889999999999999999999886 789988888999999
Q ss_pred hhhhh
Q psy3210 169 LICCY 173 (272)
Q Consensus 169 LV~~y 173 (272)
||+||
T Consensus 73 LV~~y 77 (77)
T PF00017_consen 73 LVEHY 77 (77)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 99998
No 10
>KOG4637|consensus
Probab=99.80 E-value=9.8e-20 Score=162.94 Aligned_cols=103 Identities=30% Similarity=0.519 Sum_probs=96.0
Q ss_pred CCcccccEeeeeCCHHHHHHhcccCCCceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEecCCCcceEEeecccc
Q psy3210 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQSRY 162 (272)
Q Consensus 83 ~~l~~~~Wf~g~isR~~Ae~lL~~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~~g~~~~~~i~~~~~ 162 (272)
.+|...+||||.|+|+++.+.|.+.+||+||||+-. +.+|.|+|+++.++.++-++|...++ +|-+.+.-+
T Consensus 18 ~~L~~a~WYWgdisReev~~~L~d~PDGsFlVRdAs-----tm~GdYTLtl~k~g~~KLikI~h~Dg----KyGF~d~lt 88 (464)
T KOG4637|consen 18 DELQDAEWYWGDISREEVNKKLRDQPDGSFLVRDAS-----TMQGDYTLTLRKGGNNKLIKIVHRDG----KYGFSDPLT 88 (464)
T ss_pred hhhhhccccccccCHHHHHHHhcCCCCCcEEeeccc-----cCCCceEEEEecCCccceeeeEEecC----ccCCCCchh
Confidence 458999999999999999999999999999999885 45799999999999999999999876 788888889
Q ss_pred cchhhhhhhhhhccccccccccccccccccce
Q psy3210 163 FRSIVELICCYERNSLIENFIGLNVRLQLPFR 194 (272)
Q Consensus 163 F~sL~eLV~~y~~~~L~~~~~~l~~~L~~P~~ 194 (272)
|.|+++||+||+..+|+..++.|+.+|.+|+.
T Consensus 89 f~SVVelIn~yr~~SL~~yN~~LDvrLlyPVs 120 (464)
T KOG4637|consen 89 FNSVVELINHYRNESLAQYNPKLDVRLLYPVS 120 (464)
T ss_pred hHHHHHHHHHHhhhHHHhhCcccceeeechHH
Confidence 99999999999999999999999999999995
No 11
>KOG0194|consensus
Probab=99.75 E-value=4e-18 Score=161.47 Aligned_cols=162 Identities=24% Similarity=0.333 Sum_probs=113.4
Q ss_pred CCcccccEeeeeCCHHHHHHhcccCCCceEEEEeCCCCCCCCCCCce-EEEEeeC--CeeeEEEEEEecCCCcceEEeec
Q psy3210 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIY-ALSLKTD--EKVKHMKVYEKEMDGVPQYFLSQ 159 (272)
Q Consensus 83 ~~l~~~~Wf~g~isR~~Ae~lL~~~~~G~FLVR~s~~~~~~~~~~~y-~LSv~~~--~~v~H~~I~~~~~g~~~~~~i~~ 159 (272)
..+..++||||.+.|++|+.+|.+ +|+||||.++..+ .....+ .||++.. ..++||.|.+.++ +++...
T Consensus 44 ~~~~~~~~yHG~l~red~~~lL~~--~GDfLvR~s~~~~--~~~~~~~vlSv~~~~~~~~~h~vi~~~~~----~~~~~~ 115 (474)
T KOG0194|consen 44 KDLRELPYYHGLLPREDAEKLLKN--DGDFLVRASEPKE--GEKREFVVLSVKWSVFKKIKHYVIKRNGN----LFFFEG 115 (474)
T ss_pred hHhhcCccccccccHhHHHHHhCC--CCceEEEeecccC--CcceeEEEEEEEeecCCceeEEEEEEcCC----eeEEec
Confidence 455668999999999999999987 6999999998652 223334 9999985 7899999998766 677777
Q ss_pred ccccchhhhhhhhhhccccccccccccccccccceeeeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCC
Q psy3210 160 SRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDE 239 (272)
Q Consensus 160 ~~~F~sL~eLV~~y~~~~L~~~~~~l~~~L~~P~~~~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g 239 (272)
...|+++.+||.||+.+.+.... ....|..|+.+.. |...++++.+.+ ...-+.||+ .|.|+..-
T Consensus 116 ~~~F~si~~li~~~~~~~~~~~~--~~~~L~~PI~r~~-------Wel~H~~v~l~k---kLGeGaFGe---V~~G~l~~ 180 (474)
T KOG0194|consen 116 LRKFPTISELVNYYKFSKLEITG--KNFFLKRPIPRQK-------WELSHSDIELGK---KLGEGAFGE---VFKGKLKL 180 (474)
T ss_pred cccCCcHHHHHHHHHhcccceec--cceeecccccccc-------cEEeccCccccc---eeecccccE---EEEEEEEe
Confidence 77899999999999988854332 2335777775421 222345544431 112234443 56665531
Q ss_pred ee-------------e---e---eeccchhhhhhhccCCCCCcccce
Q psy3210 240 RV-------------S---Y---FFQLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 240 ~~-------------G---~---fP~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
+. | . --.+|+.||++|++|+|+|||||-
T Consensus 181 ~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~y 227 (474)
T KOG0194|consen 181 KNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFY 227 (474)
T ss_pred cCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence 11 1 0 013689999999999999999983
No 12
>KOG4226|consensus
Probab=99.69 E-value=1e-16 Score=138.77 Aligned_cols=88 Identities=25% Similarity=0.469 Sum_probs=77.2
Q ss_pred cccccEeeeeCCHHHHHHhcc-cCCCceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEecCCCcceEEeeccccc
Q psy3210 85 LSEYLWFVGEMGREKATSLLE-READGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQSRYF 163 (272)
Q Consensus 85 l~~~~Wf~g~isR~~Ae~lL~-~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~~g~~~~~~i~~~~~F 163 (272)
+...+||+|+|+|.+||.+|. ...+|+||||+|++ +++.|++|++..++-+||+|...++ .|.|+.. .|
T Consensus 278 ~ag~~WYyG~itR~qae~~Ln~hG~eGdFLiRDSEs-----npgD~SvSlka~grNKHFkVq~~d~----~ycIGqR-kF 347 (379)
T KOG4226|consen 278 FAGRPWYYGNITRHQAECALNEHGHEGDFLIRDSES-----NPGDFSVSLKASGRNKHFKVQLVDN----VYCIGQR-KF 347 (379)
T ss_pred ccCCcceeccccHHHHHHHHhccCccCceEEecCCC-----CCcceeEEeeccCCCcceEEEEecc----eEEeccc-ee
Confidence 566799999999999999995 45789999999975 4699999999999999999988766 7999876 49
Q ss_pred chhhhhhhhhhcccccccc
Q psy3210 164 RSIVELICCYERNSLIENF 182 (272)
Q Consensus 164 ~sL~eLV~~y~~~~L~~~~ 182 (272)
.++.+||+||++.++..+-
T Consensus 348 ~tmd~Lv~HY~kaPIfts~ 366 (379)
T KOG4226|consen 348 HTMDELVEHYKKAPIFTSE 366 (379)
T ss_pred ccHHHHHHhhhcCCceecC
Confidence 9999999999999875443
No 13
>KOG0790|consensus
Probab=99.61 E-value=7.9e-16 Score=141.18 Aligned_cols=106 Identities=28% Similarity=0.522 Sum_probs=88.6
Q ss_pred ecCccCcCCcccccEeeeeCCHHHHHHhcc-cCCCceEEEEeCCCCCCCCCCCceEEEEeeCC---------eeeEEEEE
Q psy3210 76 AKSWADHENLSEYLWFVGEMGREKATSLLE-READGTYLLRIRPQGPTHPNETIYALSLKTDE---------KVKHMKVY 145 (272)
Q Consensus 76 P~~~~~~~~l~~~~Wf~g~isR~~Ae~lL~-~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~---------~v~H~~I~ 145 (272)
|-++|+ ...+.||||+++-.+||.||. ...+|+||||+|.+. +|.|+||++.+. +|.|+.|.
T Consensus 101 pl~cAd---ptserWfHG~LsgkeAekLl~ekgk~gsfLvReSqs~-----PGdfVlSvrTdd~~~~~~~~~kVtHvmI~ 172 (600)
T KOG0790|consen 101 PLNCAD---PTSERWFHGHLSGKEAEKLLQEKGKHGSFLVRESQSH-----PGDFVLSVRTDDKKESNDSKLKVTHVMIR 172 (600)
T ss_pred CCccCC---chhhhhhccCCCchhHHHHHHhcCCCccEEEeccccC-----CCceEEEEEcCCcccCCCCccceEEEEEE
Confidence 667743 456779999999999999994 457899999999854 699999999975 89999999
Q ss_pred EecCCCcceEEeecccccchhhhhhhhhhccccccccccccccccccce
Q psy3210 146 EKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFR 194 (272)
Q Consensus 146 ~~~~g~~~~~~i~~~~~F~sL~eLV~~y~~~~L~~~~~~l~~~L~~P~~ 194 (272)
..+. +|-+++...|.||.+||+||+++++.|.. +--..|.+|+.
T Consensus 173 ~q~~----kydVGgge~F~sltdLidhykknpmvEt~-gtvv~LrqP~n 216 (600)
T KOG0790|consen 173 CQEG----KYDVGGGERFDSLTDLVEHYKKNPMVETL-GTVVYLRQPLN 216 (600)
T ss_pred eccc----ccccCCccccchHHHHHHHhccCchhhhc-ceeEEeecccc
Confidence 9764 89999999999999999999999987652 33456677764
No 14
>KOG4637|consensus
Probab=99.56 E-value=2.9e-15 Score=134.44 Aligned_cols=97 Identities=31% Similarity=0.497 Sum_probs=87.0
Q ss_pred ccEeeeeCCHHHHHHhcccCCCceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEecCCCcceEEeecccccchhh
Q psy3210 88 YLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIV 167 (272)
Q Consensus 88 ~~Wf~g~isR~~Ae~lL~~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~~g~~~~~~i~~~~~F~sL~ 167 (272)
..|+.+.+.|..||++|+..++|+||||.|. +.|.|+|||..++.|+|+.|.+...| +-|-.....+.||.
T Consensus 332 ~~w~~~~a~r~kAe~llrg~~dGtFLIR~ss------~~g~yalSV~~~~~V~HClIy~tatG---~GFa~pyn~y~tlk 402 (464)
T KOG4637|consen 332 KTWRVRDANRDKAEELLRGKPDGTFLIRESS------KGGCYALSVVHDGEVKHCLIYQTATG---FGFAEPYNLYSTLK 402 (464)
T ss_pred hHhHHhhhhHHHHHHHhcCCCCCeEEEeecc------CCCceEEEEEECCceeeeEEeecccc---ccccchhHHHHHHH
Confidence 4799999999999999999999999999974 45999999999999999999999887 22333344789999
Q ss_pred hhhhhhhccccccccccccccccccc
Q psy3210 168 ELICCYERNSLIENFIGLNVRLQLPF 193 (272)
Q Consensus 168 eLV~~y~~~~L~~~~~~l~~~L~~P~ 193 (272)
+||.||++++|.+..+.+.++|.+|+
T Consensus 403 ~lV~hY~h~SLe~HnDal~ttLr~Pv 428 (464)
T KOG4637|consen 403 ELVLHYQHTSLEQHNDALTTTLRYPV 428 (464)
T ss_pred HHHHHHhhhhHHhhccccccccccce
Confidence 99999999999999999999999998
No 15
>KOG1264|consensus
Probab=99.51 E-value=3.6e-14 Score=137.85 Aligned_cols=105 Identities=30% Similarity=0.454 Sum_probs=87.8
Q ss_pred CCcccccEeeeeCC-HHHHHHhccc------CCCceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEecCCCcceE
Q psy3210 83 ENLSEYLWFVGEMG-REKATSLLER------EADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQY 155 (272)
Q Consensus 83 ~~l~~~~Wf~g~is-R~~Ae~lL~~------~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~~g~~~~~ 155 (272)
.-+-.+.||||.+. |.+|+++|++ .+||+||||+|+ +..|.|+||+..+++|.|++|.....++..+|
T Consensus 529 ElH~~E~WFHgkle~R~eAekll~eycke~G~~dGtFlVReS~-----tFvgDytLSfwr~grv~HcRIrsk~e~gt~Ky 603 (1267)
T KOG1264|consen 529 ELHFGEKWFHGKLEGRTEAEKLLQEYCKETGGKDGTFLVRESE-----TFVGDYTLSFWRSGRVQHCRIRSKMEGGTLKY 603 (1267)
T ss_pred hhccchhhhhcccccchHHHHHHHHHHHHhCCCCccEEEeecc-----ccccceeeeeeECCceeeEEEEeeecCCceeE
Confidence 33456799999998 9999999963 359999999995 78899999999999999999998766555689
Q ss_pred Eeecccccchhhhhhhhhhccccccccccccccccccce
Q psy3210 156 FLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFR 194 (272)
Q Consensus 156 ~i~~~~~F~sL~eLV~~y~~~~L~~~~~~l~~~L~~P~~ 194 (272)
++.++..|+||.+||.||+.+.|... .....|+.|++
T Consensus 604 yl~dN~vfdslY~LI~~Y~~~~Lr~a--eF~m~LtePvP 640 (1267)
T KOG1264|consen 604 YLTDNLVFDSLYALIQHYRETHLRCA--EFEMRLTEPVP 640 (1267)
T ss_pred EEecchhHHHHHHHHHHHHhcccccc--ceEEEecCCCC
Confidence 99999999999999999999987422 23456676764
No 16
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=99.49 E-value=4.6e-14 Score=93.68 Aligned_cols=49 Identities=31% Similarity=0.639 Sum_probs=43.9
Q ss_pred eeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchh
Q psy3210 200 AEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWG 250 (272)
Q Consensus 200 alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVe 250 (272)
|+|||.+.+.+||+|.+||+|.|+.+.+ .|||.|+.+|+.|+||++||+
T Consensus 1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~--~~W~~g~~~g~~G~~P~~yV~ 49 (49)
T PF14604_consen 1 ALYDYEAQDPDELSFKKGDVITVLEKSD--DGWWYGRNTGRTGLFPANYVE 49 (49)
T ss_dssp ESSCBCSSSTTB-EB-TTEEEEEEEESS--TSEEEEEETTEEEEEEGGGEE
T ss_pred CCccCCCCCcCEeeEcCCCEEEEEEeCC--CCEEEEEECCEEEEECHHhCC
Confidence 6899999999999999999999998766 689999999999999999986
No 17
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=99.31 E-value=3.4e-12 Score=86.68 Aligned_cols=53 Identities=30% Similarity=0.636 Sum_probs=46.2
Q ss_pred eeeeccCCCCCCCCCccCCCcEEEEe-eeeCCcCCeEEEEeCCeeeeeeccchhhh
Q psy3210 198 AVAEFDFCPTEANQLPLKQGCQVIVL-SKEGEQKGWWKGKIDERVSYFFQLYWGNF 252 (272)
Q Consensus 198 ~~alydf~~~~~~ELsl~~Gd~i~v~-~k~ge~~gwW~G~~~g~~G~fP~~yVeE~ 252 (272)
++|++||.+..+++|+|.+||+|.|+ ++.. .+||.|+.+|+.|+||++||+++
T Consensus 2 ~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~--~~ww~~~~~g~~G~~P~~~v~~~ 55 (55)
T PF07653_consen 2 YRAIFDYVAEDPDELSFKKGDVIEVLGEKDD--DGWWLGENNGRRGWFPSSYVEEI 55 (55)
T ss_dssp EEESSSBESSSTTB-EB-TTEEEEEEEEECS--TSEEEEEETTEEEEEEGGGEEEH
T ss_pred EEEeEEECCCCCCceEEecCCEEEEEEeecC--CCEEEEEECCcEEEEcHHHEEEC
Confidence 68999999999999999999999999 5554 58999999999999999999874
No 18
>KOG2070|consensus
Probab=99.24 E-value=4.9e-12 Score=117.51 Aligned_cols=61 Identities=25% Similarity=0.547 Sum_probs=55.0
Q ss_pred eeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhhhhhccCC
Q psy3210 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNFRLLSSLF 259 (272)
Q Consensus 197 ~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~~~mk~l~ 259 (272)
.|+|.|+|.+...|||+|.+||+|+|....+ .|||.|+.+|++||||+|||.|++.-+.|.
T Consensus 19 vvrAkf~F~gsNnDELsf~KgDvItVTq~ee--GGWWEGTlng~TGWFPsnYV~eik~e~pLs 79 (661)
T KOG2070|consen 19 VVRAKFNFQGSNNDELSFSKGDVITVTQVEE--GGWWEGTLNGRTGWFPSNYVREIKSEKPLS 79 (661)
T ss_pred EEEEEeecccCCCceeccccCCEEEEEEecc--CcceeccccCccCccchHHHHHHhhcCCCC
Confidence 5889999999999999999999999997665 689999999999999999999998655553
No 19
>KOG2199|consensus
Probab=99.23 E-value=2.4e-12 Score=116.92 Aligned_cols=54 Identities=28% Similarity=0.487 Sum_probs=50.2
Q ss_pred eeeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchh
Q psy3210 195 QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWG 250 (272)
Q Consensus 195 ~~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVe 250 (272)
...|+|||||++.+.+||+|++||||+|+...+ .+||+|.+.+..|+||+|||.
T Consensus 215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~--~~WWKG~~~~~~GlFPsnfVT 268 (462)
T KOG2199|consen 215 VRKVRALYDFEAAEDNELSFKAGDIITVLDDSD--PNWWKGENHRGIGLFPSNFVT 268 (462)
T ss_pred chhhhhhhcccccCCCccceecCcEEEEcccCC--cchhccccCCcccccchhhhh
Confidence 346899999999999999999999999998777 789999999999999999997
No 20
>KOG1118|consensus
Probab=99.11 E-value=2.3e-11 Score=107.32 Aligned_cols=60 Identities=22% Similarity=0.360 Sum_probs=54.9
Q ss_pred eeeeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhhhhh
Q psy3210 194 RQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNFRLL 255 (272)
Q Consensus 194 ~~~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~~~m 255 (272)
....++|+|||+++...||.|++||+|++++++| ++||.|+..|..||||.|||+.+-.+
T Consensus 305 ~~p~cralYdFepenEgEL~fkeGDlI~l~~QId--enWyeG~~~g~sG~FPvnYv~vlvpl 364 (366)
T KOG1118|consen 305 DQPCCRALYDFEPENEGELDFKEGDLITLTNQID--ENWYEGEKHGESGMFPVNYVEVLVPL 364 (366)
T ss_pred cchhheeeeccCCCCCCccCcccCceeeehhhcC--cchhhheecCccCccccceeEEeccC
Confidence 4556899999999999999999999999999999 67999999999999999999976554
No 21
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=99.10 E-value=1.6e-10 Score=76.13 Aligned_cols=46 Identities=28% Similarity=0.590 Sum_probs=41.4
Q ss_pred eeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeC--Ceeeeeec
Q psy3210 199 VAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID--ERVSYFFQ 246 (272)
Q Consensus 199 ~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~--g~~G~fP~ 246 (272)
+|+|||.+...+||+|++||+|.|+++.+ .+||.++.. ++.|+||+
T Consensus 1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~--~~Ww~~~~~~~~~~G~vP~ 48 (48)
T PF00018_consen 1 RALYDFDAEDPDELSFKKGDIIEVLEKSD--DGWWKVRNESTGKEGWVPS 48 (48)
T ss_dssp EESSCBETSSTTBSEB-TTEEEEEEEESS--SSEEEEEETTTTEEEEEEG
T ss_pred CCCeeeCCCCCCEEeEECCCEEEEEEecC--CCEEEEEECCCCcEEEeeC
Confidence 58999999999999999999999998887 589999987 69999996
No 22
>KOG4348|consensus
Probab=99.02 E-value=4.4e-11 Score=109.81 Aligned_cols=59 Identities=29% Similarity=0.597 Sum_probs=53.5
Q ss_pred eeeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhhhhh
Q psy3210 195 QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNFRLL 255 (272)
Q Consensus 195 ~~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~~~m 255 (272)
++.+++.|.|.++..|||+|..||+|++++... +|||+|..+|..||||+|||+|...-
T Consensus 100 ~r~c~v~f~Y~pqndDELelkVGDiIeli~eVE--eGWw~G~Lngk~GmFPsNFVkel~~~ 158 (627)
T KOG4348|consen 100 ARICVVTFAYSPQNDDELELKVGDIIELISEVE--EGWWKGKLNGKVGMFPSNFVKELPTP 158 (627)
T ss_pred ceeEEEEEeecCCCCceeeeeeccHHHhhhHhh--hhhhhceecCcccccchhhceecCCC
Confidence 457889999999999999999999999998776 68999999999999999999986543
No 23
>smart00326 SH3 Src homology 3 domains. Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.
Probab=98.97 E-value=9.3e-10 Score=74.07 Aligned_cols=53 Identities=28% Similarity=0.633 Sum_probs=48.2
Q ss_pred eeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeC-Ceeeeeeccchhh
Q psy3210 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID-ERVSYFFQLYWGN 251 (272)
Q Consensus 197 ~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~-g~~G~fP~~yVeE 251 (272)
.++|+|||.+...++|+|.+||.|.++++.+ .|||.++.. ++.|+||.+||++
T Consensus 4 ~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~--~~w~~~~~~~~~~G~vP~~~v~~ 57 (58)
T smart00326 4 QVRALYDYTAQDPDELSFKKGDIITVLEKSD--DGWWKGRLGRGKEGLFPSNYVEE 57 (58)
T ss_pred EEEEeeeeCCCCCCCCCCCCCCEEEEEEcCC--CCeEEEEeCCCCEEEEchHHEEE
Confidence 5789999999999999999999999998765 689999988 9999999999875
No 24
>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies.
Probab=98.96 E-value=1.4e-09 Score=72.31 Aligned_cols=52 Identities=27% Similarity=0.586 Sum_probs=46.7
Q ss_pred eeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCC-eeeeeeccchhh
Q psy3210 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDE-RVSYFFQLYWGN 251 (272)
Q Consensus 198 ~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g-~~G~fP~~yVeE 251 (272)
++|+|||.+...+||+|.+||.|.+++..+ .|||.++..+ +.|+||.+||++
T Consensus 2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~--~~w~~~~~~~~~~G~vP~~~v~~ 54 (54)
T cd00174 2 VRALYDYDARDPDELSFKKGDIIEVLEKSD--DGWWEGRLLGGKRGLFPSNYVEE 54 (54)
T ss_pred EEEEEeeCCCCCCCCCCCCCCEEEEEEcCC--CCeEEEEECCCCEEEEccccCcC
Confidence 578999999999999999999999998754 6899999876 999999999873
No 25
>KOG0790|consensus
Probab=98.96 E-value=7.2e-10 Score=102.40 Aligned_cols=97 Identities=28% Similarity=0.471 Sum_probs=80.6
Q ss_pred cccEeeeeCCHHHHHHhccc-CCCceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEecCCCcceEEeecccccch
Q psy3210 87 EYLWFVGEMGREKATSLLER-EADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQSRYFRS 165 (272)
Q Consensus 87 ~~~Wf~g~isR~~Ae~lL~~-~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~~g~~~~~~i~~~~~F~s 165 (272)
...|||..++-.+||.+|+. ..+|+||.|.|+ ++++.|+||++.+++|.|++|....+ .|.+.+...|.+
T Consensus 3 s~~wfh~~~~g~~ae~Ll~~~g~dgsfl~r~s~-----sNp~~fsl~~r~~~~v~hikiq~~~~----~~~l~~gekfat 73 (600)
T KOG0790|consen 3 SRRWFHPDLSGVEAETLLKERGVDGSFLARPSE-----SNPGDFSLSVRRGDKVTHIKIQNSGD----FYDLYGGEKFAT 73 (600)
T ss_pred chhhcCCCccchhHHHHHHHhccccchhhcccc-----CCCcceeEEEEeCCceEEEEEeecCc----cccccCCccccc
Confidence 35799999999999999986 578999999997 45799999999999999999988765 688888888999
Q ss_pred hhhhhhhhhccc--cccccccccccccccc
Q psy3210 166 IVELICCYERNS--LIENFIGLNVRLQLPF 193 (272)
Q Consensus 166 L~eLV~~y~~~~--L~~~~~~l~~~L~~P~ 193 (272)
+.|||+||+.+. |.+. .+.-..|.+|.
T Consensus 74 ~~ELvqyyme~~~~lkek-ng~~ielK~pl 102 (600)
T KOG0790|consen 74 LAELVQYYMEHHGQLKEK-NGDVIELKYPL 102 (600)
T ss_pred hHHHHHHHHhhhHHHHhc-CCCEEEecCCC
Confidence 999999998766 3332 34445666665
No 26
>KOG1930|consensus
Probab=98.96 E-value=6.4e-10 Score=101.81 Aligned_cols=94 Identities=26% Similarity=0.403 Sum_probs=77.3
Q ss_pred ccccEeeeeCCHHHHHHhcccCCCceEEEEeCCCCCCCCCCCceEEEEeeC---------------CeeeEEEEEEecCC
Q psy3210 86 SEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTD---------------EKVKHMKVYEKEMD 150 (272)
Q Consensus 86 ~~~~Wf~g~isR~~Ae~lL~~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~---------------~~v~H~~I~~~~~g 150 (272)
...-||..+|+|++|-.||++++.|+|+||+|. +.+|.|-|.++.. ..|+||.|+....|
T Consensus 210 TSKyWYKP~isREQAIalLrdkePGtFvvRDS~-----SfrGayGLAlKVstPPPs~~~~~g~~~neLVRHFLIE~spkG 284 (483)
T KOG1930|consen 210 TSKYWYKPNISREQAIALLRDKEPGTFVVRDSH-----SFRGAYGLALKVSTPPPSVQPGDGSDSNELVRHFLIEPSPKG 284 (483)
T ss_pred ccccccCCCCCHHHHHHHhhcCCCCeEEEecCC-----cCCCccceEEEeccCCCcccCCCCCchhhhhhhheeccCCCc
Confidence 345799999999999999999999999999995 7789999998872 35999999987764
Q ss_pred CcceEEeec---ccccchhhhhhhhhhccccccccccccccccccc
Q psy3210 151 GVPQYFLSQ---SRYFRSIVELICCYERNSLIENFIGLNVRLQLPF 193 (272)
Q Consensus 151 ~~~~~~i~~---~~~F~sL~eLV~~y~~~~L~~~~~~l~~~L~~P~ 193 (272)
..|.+ ...|.||..||--|.-.+| .|++.|..|-
T Consensus 285 ----VkLKGC~nEP~FGSLSALV~QHSIt~L-----ALPckL~iP~ 321 (483)
T KOG1930|consen 285 ----VKLKGCDNEPVFGSLSALVYQHSITAL-----ALPCKLVIPD 321 (483)
T ss_pred ----eeccCCCCCCccchhHHHHhhccchhh-----hcceeEeccC
Confidence 55533 4489999999999988886 4666666554
No 27
>KOG1029|consensus
Probab=98.95 E-value=2.5e-10 Score=110.99 Aligned_cols=52 Identities=25% Similarity=0.547 Sum_probs=49.3
Q ss_pred eeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchh
Q psy3210 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWG 250 (272)
Q Consensus 197 ~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVe 250 (272)
.++|+|||.++..|||+|.+||+|.|+++.+ ..||.|+.+|..|+||+|||.
T Consensus 1055 qviamYdY~AqndDELsF~kgdiI~Vlnkde--peWW~Ge~ng~sGLFPSNYV~ 1106 (1118)
T KOG1029|consen 1055 QVIAMYDYEAQNDDELSFKKGDIINVLNKDE--PEWWSGERNGKSGLFPSNYVQ 1106 (1118)
T ss_pred eeEEeeccccCCcccccccCCCEEEecCCCC--hhhhcccccCccccCcccccc
Confidence 4789999999999999999999999999988 679999999999999999995
No 28
>KOG2856|consensus
Probab=98.94 E-value=1.9e-10 Score=103.67 Aligned_cols=56 Identities=30% Similarity=0.569 Sum_probs=51.6
Q ss_pred eeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeC-Ceeeeeeccchhhh
Q psy3210 196 IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID-ERVSYFFQLYWGNF 252 (272)
Q Consensus 196 ~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~-g~~G~fP~~yVeE~ 252 (272)
..|+|||||.+++.|||+|++||.++++...++ .||.+|+.. |++|++|+|||+-+
T Consensus 415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDe-qGWC~Grl~~G~vGLyPAnYVe~~ 471 (472)
T KOG2856|consen 415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDE-QGWCKGRLDSGRVGLYPANYVECI 471 (472)
T ss_pred eeEEeeeccCcccccchhhccccHhhhcCCccc-cccccccccCCcccccchhhhhcc
Confidence 468999999999999999999999999987777 799999998 99999999999854
No 29
>KOG4226|consensus
Probab=98.91 E-value=9.5e-10 Score=95.83 Aligned_cols=57 Identities=28% Similarity=0.599 Sum_probs=51.2
Q ss_pred eeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhhhhh
Q psy3210 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNFRLL 255 (272)
Q Consensus 197 ~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~~~m 255 (272)
.+..-|.|.++..|||+|.+|+.|.|..|-. .|||+|..+|.+||||+|||.|.---
T Consensus 109 ~AvVKf~Y~a~~eDELsLtKGtrv~vmEKss--DGWWrG~~ng~VGWFPSNYv~E~~ds 165 (379)
T KOG4226|consen 109 PAVVKFNYVAEREDELSLTKGTRVTVMEKSS--DGWWRGSYNGQVGWFPSNYVTEEVDS 165 (379)
T ss_pred ceEEEEeeccccccccccccCcEEEEEEecc--CcceecccCCeeccccccceehhccc
Confidence 3667899999999999999999999999887 68999999999999999999876444
No 30
>KOG0162|consensus
Probab=98.83 E-value=1.8e-09 Score=104.77 Aligned_cols=56 Identities=21% Similarity=0.565 Sum_probs=51.2
Q ss_pred eeeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhh
Q psy3210 195 QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNF 252 (272)
Q Consensus 195 ~~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~ 252 (272)
...+.|+|||.+++.+||+|++||+|+++.+.. .|||.|..+|+.||||.+||+|.
T Consensus 1051 ~p~~~A~Y~y~gq~~dEls~~~~diIei~~edp--SGWw~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1051 NPVCEALYDYPGQDVDELSFKKGDIIEIMREDP--SGWWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred CcceeeeccCCCCCcccccccCCCEEEEeccCC--CcchhhccCCccccccccccccC
Confidence 356889999999999999999999999997766 79999999999999999999873
No 31
>KOG4225|consensus
Probab=98.80 E-value=3.3e-09 Score=97.75 Aligned_cols=57 Identities=30% Similarity=0.470 Sum_probs=52.3
Q ss_pred eeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhhhh
Q psy3210 196 IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNFRL 254 (272)
Q Consensus 196 ~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~~~ 254 (272)
..++|+|+|.++...||+|.+||+|.|+.+.+ ..|+.|+.+|+.|+||.+|||.+..
T Consensus 231 ~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD--~nWyeGEhhGr~GifP~sYvE~~~~ 287 (489)
T KOG4225|consen 231 RAARALFDFEAQTPKELPFNKGDIVYILRKVD--QNWYEGEHHGRVGIFPASYVEILTP 287 (489)
T ss_pred chhhheeccccCCccccccCCCCEEEEEeecc--CceeeeeecceecceechheeecCc
Confidence 34889999999999999999999999999888 6799999999999999999996544
No 32
>KOG4348|consensus
Probab=98.77 E-value=4.1e-09 Score=97.05 Aligned_cols=59 Identities=22% Similarity=0.534 Sum_probs=52.2
Q ss_pred eeeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhhh
Q psy3210 195 QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNFR 253 (272)
Q Consensus 195 ~~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~~ 253 (272)
+.+++.+|-|+++..|||.|++||+|+++.+.-.+-|||+|+.+|+.|.||.|||+-++
T Consensus 261 Keycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~ 319 (627)
T KOG4348|consen 261 KEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQ 319 (627)
T ss_pred hhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcC
Confidence 34688999999999999999999999999863333799999999999999999999766
No 33
>KOG1029|consensus
Probab=98.54 E-value=2.6e-08 Score=97.21 Aligned_cols=58 Identities=22% Similarity=0.535 Sum_probs=52.4
Q ss_pred eeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhhhhhc
Q psy3210 196 IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNFRLLS 256 (272)
Q Consensus 196 ~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~~~mk 256 (272)
..+.|+|.|.+...++|+|.+||+|+|+.+-+ .||.|++.|++||||.+||+|+.+..
T Consensus 814 lq~iA~y~wrakke~dLsFskgd~I~Vlekqe---mwW~G~v~g~~GwFPksYVk~~~~~t 871 (1118)
T KOG1029|consen 814 LQAIALYPWRAKKENDLSFSKGDTITVLEKQE---MWWFGEVAGEIGWFPKSYVKEVGAIT 871 (1118)
T ss_pred hhHHhhccccccccccccccCCCeeeeehhcc---ceecccccCccCcCcHHhhhhccccc
Confidence 35789999999999999999999999998776 49999999999999999999887654
No 34
>KOG3875|consensus
Probab=98.43 E-value=4.7e-08 Score=86.73 Aligned_cols=58 Identities=24% Similarity=0.232 Sum_probs=50.2
Q ss_pred eeeeeccCCCCCCCCCccCCCcEEEEeeeeCCc---CCeEEEEeC--Ceeeeeeccchhhhhh
Q psy3210 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQ---KGWWKGKID--ERVSYFFQLYWGNFRL 254 (272)
Q Consensus 197 ~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~---~gwW~G~~~--g~~G~fP~~yVeE~~~ 254 (272)
+++|+|||.+.++.||+|++||++.|..|.+.. ..||..... +++|++|.|||+.+.-
T Consensus 270 ~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r 332 (362)
T KOG3875|consen 270 FARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR 332 (362)
T ss_pred HHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence 588999999999999999999999999877653 458887764 6899999999998766
No 35
>KOG4225|consensus
Probab=98.34 E-value=2.8e-07 Score=85.21 Aligned_cols=52 Identities=23% Similarity=0.449 Sum_probs=48.3
Q ss_pred eeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEE--EeCCeeeeeeccchhh
Q psy3210 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKG--KIDERVSYFFQLYWGN 251 (272)
Q Consensus 198 ~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G--~~~g~~G~fP~~yVeE 251 (272)
++|+|.|.++..|||.|.+||+|.|+.|-+ .||+.| +..|..|.||-|||+.
T Consensus 435 yrAly~Y~pqnedeLEl~egDii~VmeKcd--dgWfvGts~rtg~fGtFPgnyV~~ 488 (489)
T KOG4225|consen 435 YRALYSYRPQNEDELELREGDIIDVMEKCD--DGWFVGTSRRTGKFGTFPGNYVKR 488 (489)
T ss_pred ceeccccCCCCchhheeccCCEEeeeeccc--CcceeccceecccccccCcccccc
Confidence 689999999999999999999999999998 689999 5569999999999984
No 36
>KOG1843|consensus
Probab=98.31 E-value=2.2e-07 Score=85.24 Aligned_cols=57 Identities=23% Similarity=0.445 Sum_probs=52.5
Q ss_pred eeeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhh
Q psy3210 195 QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGN 251 (272)
Q Consensus 195 ~~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE 251 (272)
...++|+|+|..+...+|+|.+||+|.++++-+....||.|..+++.|+||+|||+-
T Consensus 416 ~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~ 472 (473)
T KOG1843|consen 416 PNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL 472 (473)
T ss_pred cceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence 457899999999999999999999999999877768899999999999999999973
No 37
>KOG3751|consensus
Probab=98.22 E-value=5.3e-07 Score=85.11 Aligned_cols=98 Identities=28% Similarity=0.501 Sum_probs=76.0
Q ss_pred CCcccccEeeeeCCHHHHHHhccc--CCCceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEecCCCcceEEe-ec
Q psy3210 83 ENLSEYLWFVGEMGREKATSLLER--EADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFL-SQ 159 (272)
Q Consensus 83 ~~l~~~~Wf~g~isR~~Ae~lL~~--~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~~g~~~~~~i-~~ 159 (272)
..+..+.||||.|+|+++.++++. -.+|.||+|+|.+. +..|++++....+|+||+|.-.++.+. .|+- ..
T Consensus 514 ~~h~sq~~~~~kis~~es~~~ikq~glv~~~~l~r~sqsn-----P~~~~~~~~~~~~v~~~~~~P~~~~~~-~~~t~~~ 587 (622)
T KOG3751|consen 514 AIHRSQTWFHGKISRDESQRLIKQQGLVDGLFLVRDSQSN-----PKIFVLSLCHPQKVKHFQILPVEDDGC-TFFTLDD 587 (622)
T ss_pred hhcccccCcccccCchhhhhHHHhcccceeeeeecccccC-----cchhhhhccCCccccceEEecCCCCCc-eeeccCC
Confidence 345678999999999999998876 35799999999865 577999999999999999987555433 3333 22
Q ss_pred -ccccchhhhhhhhhhccccccccccccccccc
Q psy3210 160 -SRYFRSIVELICCYERNSLIENFIGLNVRLQL 191 (272)
Q Consensus 160 -~~~F~sL~eLV~~y~~~~L~~~~~~l~~~L~~ 191 (272)
...|.++..|+++|+-+. ..+++.|..
T Consensus 588 g~t~~sd~~ql~~~~ql~k-----~~l~~al~~ 615 (622)
T KOG3751|consen 588 GPTKFSDLIQLVEFYQLNK-----GVLPCALKH 615 (622)
T ss_pred CCccccccccccchhhcCC-----CcchHHHHH
Confidence 347999999999999885 455555543
No 38
>KOG3655|consensus
Probab=98.19 E-value=5.2e-07 Score=84.33 Aligned_cols=56 Identities=18% Similarity=0.407 Sum_probs=50.7
Q ss_pred eeeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeC-Ceeeeeeccchhhh
Q psy3210 195 QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID-ERVSYFFQLYWGNF 252 (272)
Q Consensus 195 ~~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~-g~~G~fP~~yVeE~ 252 (272)
...++|+|||++-+..|++|-.+|.|+++...+ .|||.|... |+.|+||+|||+-+
T Consensus 427 ~q~A~A~~dyqAAddtEisf~p~d~it~Id~vd--egww~g~~pdG~~glfPaNyV~li 483 (484)
T KOG3655|consen 427 PQTARALYDYQAADDTEISFDPPDAITLIDQVD--EGWWTGQGPDGEVGLFPANYVELI 483 (484)
T ss_pred CCCccccccccccCCcccccCCccccccccccC--CccccccCCCCCcCcccccccccC
Confidence 456899999999999999999999999999888 789999975 89999999999854
No 39
>KOG2546|consensus
Probab=98.17 E-value=9.8e-07 Score=81.40 Aligned_cols=54 Identities=26% Similarity=0.513 Sum_probs=49.9
Q ss_pred eeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhh
Q psy3210 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNF 252 (272)
Q Consensus 197 ~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~ 252 (272)
.++++|||.+...|||+|.+|.+|.|++|.+ .|||+|..+|-.|+||-|||+.+
T Consensus 425 kVv~iydy~~~KddeLsf~E~ailyv~kknd--dgw~EgV~~~VTglFpgnyve~~ 478 (483)
T KOG2546|consen 425 KVVAIYDYTADKDDELSFAEGAILYVLKKND--DGWYEGVQDGVTGLFPGNYVEPL 478 (483)
T ss_pred HHHhhcccccccccccccccccEEEEEEecC--CcchhheecCcceeccCcccccc
Confidence 4789999999999999999999999998866 68999999999999999999954
No 40
>KOG3697|consensus
Probab=98.11 E-value=3.5e-06 Score=74.26 Aligned_cols=106 Identities=21% Similarity=0.123 Sum_probs=80.4
Q ss_pred CCcccccEeeeeCCHHHHHHhcccCCCceEEEEeCCCCC-----------------------------------------
Q psy3210 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGP----------------------------------------- 121 (272)
Q Consensus 83 ~~l~~~~Wf~g~isR~~Ae~lL~~~~~G~FLVR~s~~~~----------------------------------------- 121 (272)
+.....+||+|++++++++..|. ++|.|++|.+...|
T Consensus 196 d~p~k~pp~~g~l~~~~~q~~l~--~~a~~~a~~~~~~p~~~~ls~l~~~n~ppp~~p~~kl~~~~~~~n~~~~~~rd~~ 273 (345)
T KOG3697|consen 196 DIPSKMPPPGGFLDTRLKQRPLA--PDAAQFAGKEQTYPQGRHLSDLRQGNSPPPSTPEGKLHVAPTYVNTQQIPRRDLF 273 (345)
T ss_pred cccccCCCCCCccchhhhhccCC--cccchhhhhccCCcccccccchhhcCCCCCCCCCccCCCCcccccccccchhhhc
Confidence 34456799999999999999997 45788877654321
Q ss_pred -CCCCCCceEEEEeeCCeeeEEEEEEecCCCcceEEeecccccchhhhhhhhhhcccccccccccccccccccee
Q psy3210 122 -THPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195 (272)
Q Consensus 122 -~~~~~~~y~LSv~~~~~v~H~~I~~~~~g~~~~~~i~~~~~F~sL~eLV~~y~~~~L~~~~~~l~~~L~~P~~~ 195 (272)
..+.+|.|+|+=..++..||..+.-.++ -.... .+.|+|+..||+|+..+.|+.-..+....|++|+++
T Consensus 274 ~~~~~~gqyvltgl~~~~~khlllvdpeg----vvrtk-d~~fdsishli~yh~~~~lpiis~~sel~l~~pv~r 343 (345)
T KOG3697|consen 274 DETTTPGQYVLTGLQSGQPKHLLLVDPEG----VVRTK-DRRFDSISHLINYHMDNHLPIISAGSELCLQQPVER 343 (345)
T ss_pred cccCCCccEEEecccCCCcceEEEECCcc----ceecc-cchhhHHHHHHHHhhhccCceecCcchhhhhCcccc
Confidence 0245789999999999999998875543 34433 457999999999999999876666666678888754
No 41
>KOG0515|consensus
Probab=98.10 E-value=1.1e-06 Score=83.15 Aligned_cols=56 Identities=20% Similarity=0.478 Sum_probs=50.4
Q ss_pred eeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCc-CCeEEEEeCCeeeeeeccchhh
Q psy3210 196 IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQ-KGWWKGKIDERVSYFFQLYWGN 251 (272)
Q Consensus 196 ~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~-~gwW~G~~~g~~G~fP~~yVeE 251 (272)
..+-|+|||+++..|||+|.+||-++|+.+.|++ ..||-.+.+|+.|++|.||+--
T Consensus 684 G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgL 740 (752)
T KOG0515|consen 684 GVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGL 740 (752)
T ss_pred ceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhc
Confidence 3467999999999999999999999999987776 7799999999999999999863
No 42
>KOG1702|consensus
Probab=98.07 E-value=2.1e-06 Score=72.12 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=49.5
Q ss_pred eeeeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeC--Ceeeeeeccchhh
Q psy3210 194 RQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID--ERVSYFFQLYWGN 251 (272)
Q Consensus 194 ~~~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~--g~~G~fP~~yVeE 251 (272)
...+.+|.|||.+++.||++|..||.|.....++ .||..|.+. |..|+.|+||||-
T Consensus 206 ~gktyra~ydysaqdedevsF~dgd~ivnvq~id--dGWmygtv~rtg~tGmlpaNyie~ 263 (264)
T KOG1702|consen 206 TGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSID--DGWMYGTVVRTGWTGMLPANYIEF 263 (264)
T ss_pred CCccchhhccCcccCcceeEEecCCeEEEEEecc--CCceeeEEEeccccCCCchhheee
Confidence 3457899999999999999999999998888888 679888874 8999999999984
No 43
>KOG2222|consensus
Probab=98.05 E-value=1.6e-06 Score=81.29 Aligned_cols=56 Identities=16% Similarity=0.329 Sum_probs=51.2
Q ss_pred eeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhhh
Q psy3210 196 IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNFR 253 (272)
Q Consensus 196 ~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~~ 253 (272)
..++|+.||...+.+||.|+++|+|+++++.+ +..|.|+.+|-.||||+.||+-+.
T Consensus 549 krakal~df~r~dddelgfrkndiitiisekd--ehcwvgelnglrgwfpakfvelld 604 (848)
T KOG2222|consen 549 KRAKALHDFAREDDDELGFRKNDIITIISEKD--EHCWVGELNGLRGWFPAKFVELLD 604 (848)
T ss_pred HHHHHHhhhhhccccccccccccEEEEeecCC--cceeeeccccccccchHHHHHHHH
Confidence 35789999999999999999999999999888 579999999999999999998554
No 44
>KOG3632|consensus
Probab=97.84 E-value=1.2e-05 Score=80.75 Aligned_cols=58 Identities=24% Similarity=0.430 Sum_probs=50.8
Q ss_pred eeeeeeccCCCCC--------CCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhhhh
Q psy3210 196 IIAVAEFDFCPTE--------ANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNFRL 254 (272)
Q Consensus 196 ~~~~alydf~~~~--------~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~~~ 254 (272)
...+|+|||++.. ..||.|++|+||+|++..++ .|+|.|+.+|+.|++|.|||.|+.+
T Consensus 1139 rifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDa-dgFY~GE~ngr~GlIPcNmvae~~v 1204 (1335)
T KOG3632|consen 1139 RIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDA-DGFYMGELNGRRGLIPCNMVAEQPV 1204 (1335)
T ss_pred eeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccc-cceeecccccccccccccccccccC
Confidence 3568999997753 57999999999999998777 6999999999999999999998754
No 45
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=97.62 E-value=0.00036 Score=60.46 Aligned_cols=82 Identities=16% Similarity=0.248 Sum_probs=59.8
Q ss_pred cccEeeeeCCHHHHHHhcccCCCceEEEEeCCCCCCCCCCCceEEEEee-CCeeeEEEEEEecCCC----cceEEeeccc
Q psy3210 87 EYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKT-DEKVKHMKVYEKEMDG----VPQYFLSQSR 161 (272)
Q Consensus 87 ~~~Wf~g~isR~~Ae~lL~~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~-~~~v~H~~I~~~~~g~----~~~~~i~~~~ 161 (272)
.+|-|+ +++-.+|++.|.+...|.++||.|+.. ....+++++. ++...|+-|.+.+... |..+.|++ .
T Consensus 37 ~HP~F~-n~~~~qAe~~L~~~~~Ge~iIRPSSkG-----~dhL~vTwKv~d~vyqHidV~E~~K~n~~slG~~L~i~~-~ 109 (220)
T PF14633_consen 37 KHPLFK-NFNYKQAEEYLADQDVGEVIIRPSSKG-----PDHLTVTWKVADGVYQHIDVKEEDKENEFSLGKTLKIGG-E 109 (220)
T ss_dssp CSTTEE-SS-HHHHHHHHCCS-TT-EEEEE-TTT-----TTEEEEEEEEETTEEEEEEEEEECSSSTTS-SSEEEETT-E
T ss_pred cCCCcc-CCCHHHHHHHHhcCCCCCEEEeeCCCC-----CCeEEEEEEEcCCcEEEEEEEECCCcCccccCcEEEECC-e
Confidence 456677 899999999999988899999999754 3568889888 5677799998765321 23566664 4
Q ss_pred ccchhhhhhhhhhc
Q psy3210 162 YFRSIVELICCYER 175 (272)
Q Consensus 162 ~F~sL~eLV~~y~~ 175 (272)
.|.+|.|||.-|-.
T Consensus 110 ~yeDLDEii~r~V~ 123 (220)
T PF14633_consen 110 EYEDLDEIIARHVE 123 (220)
T ss_dssp EESSHHHHHHHCHH
T ss_pred EECCHHHHHHHHHH
Confidence 69999999998843
No 46
>KOG3523|consensus
Probab=97.47 E-value=2.5e-05 Score=75.16 Aligned_cols=55 Identities=20% Similarity=0.306 Sum_probs=48.6
Q ss_pred eeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeC--Ceeeeeeccchhhhh
Q psy3210 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID--ERVSYFFQLYWGNFR 253 (272)
Q Consensus 197 ~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~--g~~G~fP~~yVeE~~ 253 (272)
.+.+...|.+..+|||+|+.+|++.|+.+.. .||.+|+-. |..||||..||+|+.
T Consensus 610 Qv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~--DGWl~GeRl~Dge~GWFP~~~veeI~ 666 (695)
T KOG3523|consen 610 QVQCVHSYKAKQPDELTLELADVVNVLQKTP--DGWLEGERLRDGERGWFPSSYVEEIT 666 (695)
T ss_pred hhheeeccccCCCceeeeehhhhhhhhhcCC--CccccccccccCccCcchHHHHHHhc
Confidence 3567778999999999999999999999988 689999854 899999999999873
No 47
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=97.32 E-value=0.00012 Score=48.88 Aligned_cols=32 Identities=28% Similarity=0.605 Sum_probs=24.9
Q ss_pred ehhcccCCCceecCcCCcchhcccccC-CCCCC
Q psy3210 14 VTLKSRGLRPLCSQACYLACHKQCIPH-TGRCG 45 (272)
Q Consensus 14 ~~~~g~~~qg~~c~~c~~~~h~~c~~~-~~~C~ 45 (272)
.++-|++.|||.|..|+..+|++|+.. +..|+
T Consensus 19 ~~i~g~~~~g~~C~~C~~~~H~~C~~~~~~~C~ 51 (53)
T PF00130_consen 19 KFIWGLGKQGYRCSWCGLVCHKKCLSKVPPSCG 51 (53)
T ss_dssp SBECSSSSCEEEETTTT-EEETTGGCTSSSBSS
T ss_pred cccCCCCCCeEEECCCCChHhhhhhhhcCCCCC
Confidence 455789999999999999999999554 44553
No 48
>KOG4236|consensus
Probab=97.25 E-value=6.2e-05 Score=72.17 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=33.0
Q ss_pred heehhcccCCCceecCcCCcchhccc-ccCCCCCCCC
Q psy3210 12 SIVTLKSRGLRPLCSQACYLACHKQC-IPHTGRCGTG 47 (272)
Q Consensus 12 ~~~~~~g~~~qg~~c~~c~~~~h~~c-~~~~~~C~~~ 47 (272)
-+.||||||.||..|+-|+..|||.| .+++.+|-+.
T Consensus 284 CkkLLkGL~rQGlqCkDCk~NcHkrCa~~v~~dClge 320 (888)
T KOG4236|consen 284 CKKLLKGLFRQGLQCKDCKFNCHKRCAMKVPNDCLGE 320 (888)
T ss_pred HHHHHHHHHhcCcccccCCcchhhhhhhhcccccccc
Confidence 47899999999999999999999999 8889999754
No 49
>KOG4278|consensus
Probab=97.16 E-value=0.00029 Score=68.90 Aligned_cols=62 Identities=19% Similarity=0.315 Sum_probs=51.4
Q ss_pred eeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhhhhhccC
Q psy3210 196 IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNFRLLSSL 258 (272)
Q Consensus 196 ~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~~~mk~l 258 (272)
+..+|+|||-+...+.|++.+||.++|++.--. ..|.+.+.+.-.||+|+||+...+.+.|.
T Consensus 91 NLFVALYDFvasGdntLSitKGeklRvLGYN~N-gEWcEartKNGqGWVPSNyItPvNSLeKh 152 (1157)
T KOG4278|consen 91 NLFVALYDFVASGDNTLSITKGEKLRVLGYNKN-GEWCEARTKNGQGWVPSNYITPVNSLEKH 152 (1157)
T ss_pred ceeEeeeeeeccccceeeeecCceEEEeeecCC-CcceeecccCCCccccccccccccchhhc
Confidence 357899999999999999999999999974332 34888887544499999999999988874
No 50
>KOG3632|consensus
Probab=96.92 E-value=0.00043 Score=70.04 Aligned_cols=59 Identities=19% Similarity=0.321 Sum_probs=51.7
Q ss_pred eeeeeccCCCCC-------CCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhhhhhc
Q psy3210 197 IAVAEFDFCPTE-------ANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNFRLLS 256 (272)
Q Consensus 197 ~~~alydf~~~~-------~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~~~mk 256 (272)
..+|.|||.+++ ..||.|+.||+|.|.+++++ .|.+.|+.+|..|++|++|+++.++-+
T Consensus 1246 ~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdd-dgfyyGelngqkglvpsnfle~p~~e~ 1311 (1335)
T KOG3632|consen 1246 QMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDD-DGFYYGELNGQKGLVPSNFLEAPNAEK 1311 (1335)
T ss_pred hhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccC-CcccccccCCccCccccccccCCCccc
Confidence 467899998876 46999999999999999987 699999999999999999999875543
No 51
>KOG4566|consensus
Probab=96.88 E-value=0.0013 Score=58.15 Aligned_cols=87 Identities=21% Similarity=0.305 Sum_probs=67.8
Q ss_pred CCcccccEeeeeCCHHHHHHhcccCCCceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEecCCCcceEEeec---
Q psy3210 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQ--- 159 (272)
Q Consensus 83 ~~l~~~~Wf~g~isR~~Ae~lL~~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~~g~~~~~~i~~--- 159 (272)
+.+...+||+|.+.+.+|+..|...+.|+||||+|... +..+.|+++....-+..+|...++ .|....
T Consensus 47 ~~~~~~g~~w~~~~~~~~~~~l~~~p~~~~l~Rdss~~-----~~~~~I~vk~~~g~~~~r~~~~~~----sfr~ds~~~ 117 (258)
T KOG4566|consen 47 SLLDSSGHYWGLETANEAELCLGQEPRGTFLVRDSSHR-----PYLFTISVKTHSGPKNLRIQYQDS----SFRLDSSHR 117 (258)
T ss_pred eccccCCcccccccchhHHHhhcCCCccceeeecCcCc-----cccceeEeeeccCCCCcccccccc----ceecccccc
Confidence 45566789999999999999998888999999999744 477899999987777777876653 343321
Q ss_pred ---c-cccchhhhhhhhhhcccc
Q psy3210 160 ---S-RYFRSIVELICCYERNSL 178 (272)
Q Consensus 160 ---~-~~F~sL~eLV~~y~~~~L 178 (272)
. ..|+.+..++.+|....+
T Consensus 118 ~~~pl~~~e~~~~~~~~y~~~~~ 140 (258)
T KOG4566|consen 118 HTPPLISFEDVEVLIHHYRQSRK 140 (258)
T ss_pred cCCCcccChhHHHHHHhhhhhhh
Confidence 1 379999999999965544
No 52
>KOG0695|consensus
Probab=96.83 E-value=0.00054 Score=62.62 Aligned_cols=36 Identities=22% Similarity=0.299 Sum_probs=30.4
Q ss_pred eehhcccCCCceecCcCCcchhccc-ccCCCCCCCCC
Q psy3210 13 IVTLKSRGLRPLCSQACYLACHKQC-IPHTGRCGTGV 48 (272)
Q Consensus 13 ~~~~~g~~~qg~~c~~c~~~~h~~c-~~~~~~C~~~~ 48 (272)
--.+=|+..|||+|-.|..-|||+| -.++-.|+.+.
T Consensus 148 ~d~iwglgrqgyrcinckl~vhkkch~~v~~~cg~~~ 184 (593)
T KOG0695|consen 148 SDRIWGLGRQGYRCINCKLLVHKKCHGLVPLTCGKHM 184 (593)
T ss_pred hhhhhhcccccceeecceeehhhhhcccccchhhhhc
Confidence 3356699999999999999999999 66677898764
No 53
>KOG4429|consensus
Probab=96.82 E-value=0.00066 Score=60.32 Aligned_cols=55 Identities=16% Similarity=0.078 Sum_probs=48.7
Q ss_pred eeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhh
Q psy3210 196 IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNF 252 (272)
Q Consensus 196 ~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~ 252 (272)
..+.|+|+|.+...+||....||++++-.+.. .|||.+.+.|..+-||+.||+|+
T Consensus 364 ~lcdafYSfqarqddel~~e~gditif~Ekke--eg~~f~rl~gd~~hf~Aa~iEea 418 (421)
T KOG4429|consen 364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKE--EGPTFCRLLGDFEHFHAAEIEEA 418 (421)
T ss_pred HHhhhhhccccccccccCCcccceeeecCccc--CCCceeeeccccCCCcHHHHHHh
Confidence 45779999999999999999999986666555 68999999999999999999986
No 54
>KOG4773|consensus
Probab=96.79 E-value=0.00021 Score=64.75 Aligned_cols=54 Identities=28% Similarity=0.403 Sum_probs=48.9
Q ss_pred eeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhh
Q psy3210 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNF 252 (272)
Q Consensus 197 ~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~ 252 (272)
.+.|++||.+....||.|.+||++.+..+.+ ++||.|+..+..||+|..|++.+
T Consensus 177 ~~~a~~df~gns~~EL~l~agdV~~~~~r~e--k~W~~gk~R~~~g~yp~sF~~~l 230 (386)
T KOG4773|consen 177 RAEASFDFPGNSKLELNLVAGDVEFLLSRDE--KYWLLGKVRGLTGYYPDSFVKQL 230 (386)
T ss_pred HHHhhccCCCCccceeeeehhhHHHHHhhcc--cceeeeeeccccccccHHhhhhh
Confidence 4678999999999999999999988887776 78999999999999999999865
No 55
>KOG4575|consensus
Probab=96.78 E-value=0.0013 Score=63.90 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=42.9
Q ss_pred ccccceeeeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEE-eC--Ceeeeeeccch
Q psy3210 189 LQLPFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK-ID--ERVSYFFQLYW 249 (272)
Q Consensus 189 L~~P~~~~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~-~~--g~~G~fP~~yV 249 (272)
++.|+ .++|+|.+.++...+|.|.+||+|+++. .+ .|||-+. .. ...|+||+|||
T Consensus 5 ~q~p~---~vrA~y~w~ge~eGdl~f~egDlie~tr-I~--dgkwwi~lhrNk~~~g~fpsNFv 62 (874)
T KOG4575|consen 5 KQLPC---MVRALYAWPGEREGDLKFTEGDLIEQTR-IE--DGKWWILLHRNKDEDGLFPSNFV 62 (874)
T ss_pred cCCCc---eEEeeccCCCCcccccceecccceeEEe-ec--cceeeeeeeecccccccCcccce
Confidence 44455 5899999999999999999999999984 44 3555543 32 57899999999
No 56
>KOG3601|consensus
Probab=96.78 E-value=0.00019 Score=60.91 Aligned_cols=52 Identities=23% Similarity=0.389 Sum_probs=46.8
Q ss_pred eeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchh
Q psy3210 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWG 250 (272)
Q Consensus 198 ~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVe 250 (272)
+.+++||.+...+||+|.+||.+++++.+++ ..|.+.+..|..|++|.||.+
T Consensus 3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d~-~nw~~ael~g~~g~~P~Nai~ 54 (222)
T KOG3601|consen 3 AVAKNDFLAGIRDELSFLKGDNLKILNMEDD-INWYKAELDGPEGFIPKNAIR 54 (222)
T ss_pred hhhhhhhhhcCcccceeecCCceEecchHHh-hhhhhHhhcCccccCcccccc
Confidence 5788999999999999999999999987765 689999999999999999984
No 57
>KOG3771|consensus
Probab=96.67 E-value=0.00069 Score=63.82 Aligned_cols=54 Identities=11% Similarity=0.147 Sum_probs=41.9
Q ss_pred eeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchh
Q psy3210 196 IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWG 250 (272)
Q Consensus 196 ~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVe 250 (272)
..++|+|||.+.+.+||+|..||+|.|+. .++...||.|...|..+-++.+|+.
T Consensus 401 ~~v~a~~dy~a~~~deLsf~~gd~i~vi~-s~~~~e~~eg~~mg~ke~~~~~~~~ 454 (460)
T KOG3771|consen 401 YKVKALHDYAAQDTDELSFEAGDVILVIP-SDNPEEQDEGWLMGVKESDWNGLFP 454 (460)
T ss_pred cceeccccccccccccccccCCCEEEEec-CCCccchhhHHHhhhccccccccee
Confidence 35889999999999999999999999997 3333668888887655555555544
No 58
>KOG4792|consensus
Probab=96.57 E-value=0.0019 Score=55.53 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=43.6
Q ss_pred eeeeeccC--CCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhh
Q psy3210 197 IAVAEFDF--CPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNF 252 (272)
Q Consensus 197 ~~~alydf--~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~ 252 (272)
.++++++- .+.+...|.|+.||+|.|..+.- .|-|+|+++|+.|.||-.||+-.
T Consensus 229 ~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ni--nGqwegElnGk~G~fPfThvrf~ 284 (293)
T KOG4792|consen 229 YARVIQKRVPNAYDKTALALEVGDIVKVTKKNI--NGQWEGELNGKIGHFPFTHVRFT 284 (293)
T ss_pred heeeehhcCCCccChhhhhhhcCcEEEEEeecc--CceeeeeecCccccccceeEEee
Confidence 34444444 45567889999999999998776 68999999999999999998743
No 59
>KOG2528|consensus
Probab=96.55 E-value=0.00085 Score=62.74 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=47.7
Q ss_pred eeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeC-Ceeeeeeccchhhhh
Q psy3210 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID-ERVSYFFQLYWGNFR 253 (272)
Q Consensus 197 ~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~-g~~G~fP~~yVeE~~ 253 (272)
.++|+|||.....+|++...||++.+.....- .|||.|... |..|.||+.||+-+.
T Consensus 4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~-~GwLeg~Nsrge~GlfPa~yVeV~~ 60 (490)
T KOG2528|consen 4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVI-EGWLEGSNSRGERGLFPASYVEVTR 60 (490)
T ss_pred chhhhcchhhcccccccccccceeeecCcccc-cccccCCCccCccCCCcccceeeec
Confidence 47899999998999999999999988865432 799999864 899999999998543
No 60
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=96.47 E-value=0.0016 Score=42.50 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=23.9
Q ss_pred ehhcccCCCceecCcCCcchhcccccCCC
Q psy3210 14 VTLKSRGLRPLCSQACYLACHKQCIPHTG 42 (272)
Q Consensus 14 ~~~~g~~~qg~~c~~c~~~~h~~c~~~~~ 42 (272)
.++.|+..|||.|..|+..+|++|...++
T Consensus 19 ~~i~~~~~~~~~C~~C~~~~H~~C~~~v~ 47 (50)
T cd00029 19 KSIWGLFKQGLRCSWCKVKCHKKCADKVP 47 (50)
T ss_pred hhhhccccceeEcCCCCCchhhhhhccCC
Confidence 34567778999999999999999966544
No 61
>KOG1451|consensus
Probab=96.44 E-value=0.0027 Score=61.35 Aligned_cols=56 Identities=13% Similarity=0.255 Sum_probs=47.1
Q ss_pred eeeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhh
Q psy3210 195 QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGN 251 (272)
Q Consensus 195 ~~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE 251 (272)
...++++|.-.+..+.|++|..|.++.-.-...+ .||..|+.+|..|++|+|||+.
T Consensus 756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e-~Gwl~GtLnGktglip~nyve~ 811 (812)
T KOG1451|consen 756 SRRVKTLYACTADHHSELSFEPGTIFTNVYESNE-DGWLVGTLNGKTGLIPSNYVEP 811 (812)
T ss_pred cccccceeccCCCCcccccccCcceeeeecccCC-CCceeeecCCCcccCcccccCc
Confidence 3457889999999999999999988766543333 6899999999999999999985
No 62
>KOG3725|consensus
Probab=96.18 E-value=0.0016 Score=57.02 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=50.6
Q ss_pred eeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhh
Q psy3210 196 IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGN 251 (272)
Q Consensus 196 ~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE 251 (272)
..++.+|||++-...||++...|+|+|..-.|-+.+|..|+..++.|-+|..|++-
T Consensus 318 rkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlEL 373 (375)
T KOG3725|consen 318 RKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLEL 373 (375)
T ss_pred cceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHh
Confidence 45889999999999999999999999998777667899999999999999999984
No 63
>KOG3557|consensus
Probab=96.04 E-value=0.0017 Score=63.22 Aligned_cols=58 Identities=22% Similarity=0.395 Sum_probs=48.8
Q ss_pred eeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeC-Ceeeeeeccchhhhhhhc
Q psy3210 196 IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID-ERVSYFFQLYWGNFRLLS 256 (272)
Q Consensus 196 ~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~-g~~G~fP~~yVeE~~~mk 256 (272)
..+..+|||.+....||+..+||+++|+. . ..+||+.... |+.|++|.|-+..++...
T Consensus 501 k~~~~~Ydf~arNs~ELsV~k~E~LEvl~-d--~R~WW~~kn~~G~~GyvP~nIL~~~~~~~ 559 (721)
T KOG3557|consen 501 KWVLVLYDFQARNSSELSVKKGEVLEVLD-D--GRKWWKVKNGHGRAGYVPSNILAPLQPEH 559 (721)
T ss_pred eeeeeehhhhcccchhhhhhhhhhhhhhh-c--cccceeccCccCCCCCcchhhhccCCCcc
Confidence 36788999999999999999999998883 2 2789998875 899999999988766543
No 64
>KOG0197|consensus
Probab=95.96 E-value=0.0023 Score=61.03 Aligned_cols=56 Identities=21% Similarity=0.491 Sum_probs=46.5
Q ss_pred eeeeeeeccCCCCCCCCCccCCCcE-EEEeeeeCCcCCeEEEEe--CCeeeeeeccchhhh
Q psy3210 195 QIIAVAEFDFCPTEANQLPLKQGCQ-VIVLSKEGEQKGWWKGKI--DERVSYFFQLYWGNF 252 (272)
Q Consensus 195 ~~~~~alydf~~~~~~ELsl~~Gd~-i~v~~k~ge~~gwW~G~~--~g~~G~fP~~yVeE~ 252 (272)
...+.|+|||.+....+|+|.+||. ..+++... ..||+... .+..|++|.|||.+.
T Consensus 11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~--~~Ww~ar~~~~~~~g~ip~N~v~~~ 69 (468)
T KOG0197|consen 11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTN--GDWWRARSLQLGQEGYIPSNYVARN 69 (468)
T ss_pred cceEEEeccccCCCccccccccCceEEEeeccCC--hhHHHHHHhhcCCCCcCcCceeecc
Confidence 4568999999999999999999999 66665544 57998765 478899999999975
No 65
>KOG0609|consensus
Probab=95.96 E-value=0.0061 Score=58.52 Aligned_cols=58 Identities=21% Similarity=0.422 Sum_probs=47.5
Q ss_pred eeeeeeeccCCCCCC-------CCCccCCCcEEEEeeeeCCcCCeEEEEeC-----Ceeeeeeccchhhhhh
Q psy3210 195 QIIAVAEFDFCPTEA-------NQLPLKQGCQVIVLSKEGEQKGWWKGKID-----ERVSYFFQLYWGNFRL 254 (272)
Q Consensus 195 ~~~~~alydf~~~~~-------~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~-----g~~G~fP~~yVeE~~~ 254 (272)
..+++|+|||++++. .-|+|.+||++.|+++.+ ..||.+... +..|++|+...+|-+.
T Consensus 214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD--~nWWQA~~~~~~~~~~AGLiPS~~~qerr~ 283 (542)
T KOG0609|consen 214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDD--PNWWQARRVGDPFGGLAGLIPSKELQERRV 283 (542)
T ss_pred eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCC--cchhhhhcccCccccccccccCHHHHHHHH
Confidence 367899999999873 468999999999999988 789998765 3568999988876543
No 66
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=95.82 E-value=0.004 Score=40.20 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=21.7
Q ss_pred hhcccCCCceecCcCCcchhcccccCCC
Q psy3210 15 TLKSRGLRPLCSQACYLACHKQCIPHTG 42 (272)
Q Consensus 15 ~~~g~~~qg~~c~~c~~~~h~~c~~~~~ 42 (272)
++.|.+ |||.|..|++.+|++|...++
T Consensus 20 ~i~~~~-~~~~C~~C~~~~H~~C~~~v~ 46 (49)
T smart00109 20 SIWGSF-QGLRCSWCKVKCHKKCAEKVP 46 (49)
T ss_pred ccCcCC-CCcCCCCCCchHHHHHHhhcC
Confidence 345555 899999999999999966544
No 67
>KOG4236|consensus
Probab=95.57 E-value=0.023 Score=55.03 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=29.3
Q ss_pred hhcccCCCceecCcCCcchhccc-ccCCCCCCC
Q psy3210 15 TLKSRGLRPLCSQACYLACHKQC-IPHTGRCGT 46 (272)
Q Consensus 15 ~~~g~~~qg~~c~~c~~~~h~~c-~~~~~~C~~ 46 (272)
+|=||..||..|..||..-||.| .+.+.+|.+
T Consensus 165 mL~GLvrQGlKC~gCglNyHKRCa~kipNNCsG 197 (888)
T KOG4236|consen 165 MLFGLVRQGLKCEGCGLNYHKRCAFKIPNNCSG 197 (888)
T ss_pred HHHHHHHccccccCCCCcHhhhhhhcCCCCCCc
Confidence 46799999999999999999999 888999965
No 68
>KOG3775|consensus
Probab=94.70 E-value=0.014 Score=53.70 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=46.1
Q ss_pred eeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeC--Ceeeeeeccchhhhhh
Q psy3210 196 IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID--ERVSYFFQLYWGNFRL 254 (272)
Q Consensus 196 ~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~--g~~G~fP~~yVeE~~~ 254 (272)
.+-++++.|-+.-+|||.|..||-|.|-.+.+ .-|++|..- |+.|+||+.|+-|+..
T Consensus 263 ~THR~~~rFvPRHpDELeLEIgDav~Ve~ead--D~W~~G~NlRTG~~GIFPA~ya~evd~ 321 (482)
T KOG3775|consen 263 QTHRAVFRFVPRHPDELELEIGDAVLVEAEAD--DFWFEGFNLRTGERGIFPAFYAHEVDG 321 (482)
T ss_pred hhhhhhhhccCCCcceeeeecCCeeEeeeccc--chhhccccccccccccccceeEEecCC
Confidence 45678999999999999999999987775554 457788763 8999999999876543
No 69
>KOG0696|consensus
Probab=92.92 E-value=0.033 Score=52.54 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=30.0
Q ss_pred ehhcccCCCceecCcCCcchhccc-ccCCCCCCC
Q psy3210 14 VTLKSRGLRPLCSQACYLACHKQC-IPHTGRCGT 46 (272)
Q Consensus 14 ~~~~g~~~qg~~c~~c~~~~h~~c-~~~~~~C~~ 46 (272)
-||-|+..||..|..|...||+.| ..+++-|+.
T Consensus 129 sLLyGl~HQGmKC~~C~mNVH~rCv~nVPslCG~ 162 (683)
T KOG0696|consen 129 SLLYGLIHQGMKCDTCDMNVHHRCVENVPSLCGT 162 (683)
T ss_pred HHHHHHHhcccccccccchHHHHHhhcCCcccCC
Confidence 378999999999999999999999 777888985
No 70
>KOG0192|consensus
Probab=92.84 E-value=0.035 Score=51.87 Aligned_cols=21 Identities=24% Similarity=0.129 Sum_probs=19.7
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.|.+|+.+|.+++|||||+|.
T Consensus 85 ~f~~E~~il~~l~HpNIV~f~ 105 (362)
T KOG0192|consen 85 AFRREASLLSRLRHPNIVQFY 105 (362)
T ss_pred HHHHHHHHHHhCCCCCeeeEE
Confidence 799999999999999999974
No 71
>KOG0196|consensus
Probab=91.66 E-value=0.079 Score=53.54 Aligned_cols=46 Identities=17% Similarity=0.256 Sum_probs=32.5
Q ss_pred EEEEeeeeCCcCCeEEEEeC--C-----------eeeee---eccchhhhhhhccCCCCCcccce
Q psy3210 219 QVIVLSKEGEQKGWWKGKID--E-----------RVSYF---FQLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 219 ~i~v~~k~ge~~gwW~G~~~--g-----------~~G~f---P~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.|+..++||| .+.|+.+ | +.|+. -.+|+.||.||-++.||||+||-
T Consensus 635 ~VIGaGEFGE---Vc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLE 696 (996)
T KOG0196|consen 635 KVIGAGEFGE---VCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLE 696 (996)
T ss_pred EEEecccccc---eecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEE
Confidence 3445567886 4566554 2 22332 35899999999999999999984
No 72
>KOG0199|consensus
Probab=91.23 E-value=0.18 Score=50.64 Aligned_cols=52 Identities=25% Similarity=0.341 Sum_probs=41.2
Q ss_pred eeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeC--Ceeeeeeccchh
Q psy3210 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID--ERVSYFFQLYWG 250 (272)
Q Consensus 198 ~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~--g~~G~fP~~yVe 250 (272)
+.|.-+++..+.+.|.|.+||.|.|++..++ .-||+|+.. ++.|.||.+-|.
T Consensus 377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a-~y~WfgQn~Rn~kvG~Fprsvvt 430 (1039)
T KOG0199|consen 377 AVARETYDSIEPGALHLTKGDEIVVIEGSGA-GYDWFGQNKRNQKVGTFPRSVVT 430 (1039)
T ss_pred ceeeeeccccCCCceeeccCCeEEEEecCCc-cceeeccccccceecccCcceee
Confidence 4455566667899999999999999976664 359999754 789999998776
No 73
>KOG1856|consensus
Probab=91.18 E-value=0.2 Score=52.26 Aligned_cols=82 Identities=20% Similarity=0.317 Sum_probs=59.8
Q ss_pred cccEeeeeCCHHHHHHhcccCCCceEEEEeCCCCCCCCCCCceEEEEeeC-CeeeEEEEEEecCC----CcceEEeeccc
Q psy3210 87 EYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTD-EKVKHMKVYEKEMD----GVPQYFLSQSR 161 (272)
Q Consensus 87 ~~~Wf~g~isR~~Ae~lL~~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~-~~v~H~~I~~~~~g----~~~~~~i~~~~ 161 (272)
.+|.|+ +++-++||..|.....|.++||.|+++ ....+++++.. +.-.|+.|...+.. -|..+.+.+.
T Consensus 1107 ~HP~F~-n~n~eQAe~yL~~~d~ge~iiRpSSrg-----ddhLvvtwKVsD~iYqhidV~E~eKEn~fslg~~l~i~~e- 1179 (1299)
T KOG1856|consen 1107 AHPLFK-NLNAEQAEAYLSDMDQGELIIRPSSRG-----DDHLVVTWKVSDGIYQHIDVQELEKENYFSLGKTLWIGGE- 1179 (1299)
T ss_pred cCcccc-CCCHHHHHHHHHhcccccEEeccccCC-----CCceEEEEEecCchhhhhhhhhhhccccccccceEEECCc-
Confidence 457777 899999999999988899999999754 46677788775 55668888764321 0113334443
Q ss_pred ccchhhhhhhhhhc
Q psy3210 162 YFRSIVELICCYER 175 (272)
Q Consensus 162 ~F~sL~eLV~~y~~ 175 (272)
.|..|.|+|.-|-.
T Consensus 1180 ~feDLDEiI~r~vq 1193 (1299)
T KOG1856|consen 1180 EFEDLDEIIARYVQ 1193 (1299)
T ss_pred ccccHHHHHHHHHH
Confidence 69999999998854
No 74
>KOG0615|consensus
Probab=90.96 E-value=0.088 Score=49.54 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=19.2
Q ss_pred eccc-hhhhhhhccCCCCCcccce
Q psy3210 245 FQLY-WGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 245 P~~y-VeE~~~mk~l~h~~~v~~~ 267 (272)
+... ..|++|||+|+||||||++
T Consensus 219 ~~~~v~~EieILkkL~HP~IV~~~ 242 (475)
T KOG0615|consen 219 KTRDVQNEIEILKKLSHPNIVRIK 242 (475)
T ss_pred chhhhHHHHHHHHhcCCCCEEEEe
Confidence 3344 4699999999999999997
No 75
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=90.69 E-value=0.49 Score=31.14 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=28.6
Q ss_pred cCCCcEEEEeeeeCCcCCeEEE-EeCCeeeeeeccchh
Q psy3210 214 LKQGCQVIVLSKEGEQKGWWKG-KIDERVSYFFQLYWG 250 (272)
Q Consensus 214 l~~Gd~i~v~~k~ge~~gwW~G-~~~g~~G~fP~~yVe 250 (272)
+..|+.|+++++.++ .+|++- ..+|..||+.++||+
T Consensus 19 l~~g~~v~v~~~~~~-~~W~~V~~~~g~~GwV~~~~l~ 55 (55)
T PF08239_consen 19 LPKGEKVTVLGESGD-GNWYKVRTYDGKTGWVSSSYLS 55 (55)
T ss_dssp EETTSEEEEEEEETT---EEEEEEETTEEEEEEGGCEE
T ss_pred EeCCCEEEEEEEcCC-cEEEEEECcCCcEEEEEccccC
Confidence 567999999988763 239888 667899999999984
No 76
>KOG0040|consensus
Probab=90.61 E-value=0.0092 Score=63.15 Aligned_cols=67 Identities=19% Similarity=0.335 Sum_probs=53.4
Q ss_pred eeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhhhhhhccCCCCCccc
Q psy3210 196 IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNFRLLSSLFIVPPVR 265 (272)
Q Consensus 196 ~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE~~~mk~l~h~~~v~ 265 (272)
..+.|+|||....+.|.+.++||+.+.+.... ..||+.+++.+.|++|+.||+-+..- .-.-+|+++
T Consensus 969 ~~v~alyd~q~kSprev~mKkgDvltll~s~n--kdwwkve~~d~qg~vpa~yvk~~~~~-~~~~~~l~~ 1035 (2399)
T KOG0040|consen 969 ECVLALYDYQEKSPREVTMKKGDVLTLLNSIN--KDWWKVEVNDRQGFVPAAYVKRLDPG-SASQPNLRR 1035 (2399)
T ss_pred HHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcc--cccccchhhhhcCcchHHHHHHhccC-CcchHHHHH
Confidence 34679999999999999999999987776555 78999999999999999999855433 444444444
No 77
>PF14633 SH2_2: SH2 domain; PDB: 3GXX_A 3GXW_B 3PJP_B 2XP1_A.
Probab=89.11 E-value=0.44 Score=41.39 Aligned_cols=82 Identities=17% Similarity=0.248 Sum_probs=52.0
Q ss_pred CcccccEeeeeCCHHHHHHhccc----CCC-ceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEE--EEEEecCCCcceEE
Q psy3210 84 NLSEYLWFVGEMGREKATSLLER----EAD-GTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM--KVYEKEMDGVPQYF 156 (272)
Q Consensus 84 ~l~~~~Wf~g~isR~~Ae~lL~~----~~~-G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~--~I~~~~~g~~~~~~ 156 (272)
++..+..|.. -+++++|+.|.. ++. -.|.+-.+. ..+|.|.|++..+...+|. .|.-..+| |.
T Consensus 131 ~~~~h~kf~~-g~~~e~e~~L~~~k~~nP~~i~Y~f~~~~-----~~PG~F~L~y~~~~~~~~~~~~v~V~p~G----f~ 200 (220)
T PF14633_consen 131 EMMNHRKFKD-GTKEEVEEWLKEEKKANPKRIPYAFCISK-----EHPGYFILSYKPNKNPRHEYWPVKVTPDG----FR 200 (220)
T ss_dssp HHHCSTTEES-S-CCCCHHHHHCHHHHSTTS-EEEEEE-T-----TSTTEEEEEEESSTTS-EEEEEEEE-SSS----EE
T ss_pred HHHhCccccC-CCHHHHHHHHHHHHHhCCCCceEEEEECC-----CCCCEEEEEEEcCCCCceEEeeEEEecCc----EE
Confidence 3444455543 356677887853 233 356666664 3579999999886544443 37666665 77
Q ss_pred eecccccchhhhhhhhhhcc
Q psy3210 157 LSQSRYFRSIVELICCYERN 176 (272)
Q Consensus 157 i~~~~~F~sL~eLV~~y~~~ 176 (272)
+... .|++|.+|+.+++.+
T Consensus 201 ~r~~-~f~~~~~L~~~FK~~ 219 (220)
T PF14633_consen 201 FRKQ-VFPSLDRLINWFKKH 219 (220)
T ss_dssp ETTE-EESSHHHHHHHHHHH
T ss_pred Eecc-cCCCHHHHHHHHhhc
Confidence 7654 699999999999864
No 78
>KOG0585|consensus
Probab=86.78 E-value=0.26 Score=47.36 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=17.7
Q ss_pred chhhhhhhccCCCCCcccce
Q psy3210 248 YWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~~ 267 (272)
-.+|+.|||+|+|||||+|-
T Consensus 155 v~~EIailKkl~H~nVV~Li 174 (576)
T KOG0585|consen 155 VRREIAILKKLHHPNVVKLI 174 (576)
T ss_pred HHHHHHHHHhcCCcCeeEEE
Confidence 45799999999999999983
No 79
>KOG0199|consensus
Probab=86.30 E-value=0.18 Score=50.67 Aligned_cols=22 Identities=14% Similarity=0.025 Sum_probs=20.7
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+|+.|+.+|.+|.|+|||||+
T Consensus 156 ddflrEas~M~~L~H~hliRLy 177 (1039)
T KOG0199|consen 156 DDFLREASHMLKLQHPHLIRLY 177 (1039)
T ss_pred HHHHHHHHHHHhccCcceeEEe
Confidence 5799999999999999999996
No 80
>KOG0694|consensus
Probab=86.27 E-value=0.15 Score=50.69 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=33.1
Q ss_pred cchheehhcccCCCceecCcCCcchhccc-ccCCCCCCC
Q psy3210 9 RSISIVTLKSRGLRPLCSQACYLACHKQC-IPHTGRCGT 46 (272)
Q Consensus 9 ~~~~~~~~~g~~~qg~~c~~c~~~~h~~c-~~~~~~C~~ 46 (272)
.|.-..++-||.+|||.|..|-..+||.| .+++..|-.
T Consensus 172 Cs~C~kFi~gL~kqGyQCqvC~~vvHKkCh~kvv~~C~~ 210 (694)
T KOG0694|consen 172 CSWCQKFIWGLRKQGYQCQVCWRVVHKKCHVKVVTLCDF 210 (694)
T ss_pred hhhhhhheeccCCCceEEeeeeehHhhhhHHHHHHhccC
Confidence 34556789999999999999999999999 888888865
No 81
>KOG1090|consensus
Probab=85.77 E-value=0.32 Score=50.32 Aligned_cols=26 Identities=15% Similarity=0.409 Sum_probs=23.2
Q ss_pred CCceecCcCCcchhcccccCCCCCCC
Q psy3210 21 LRPLCSQACYLACHKQCIPHTGRCGT 46 (272)
Q Consensus 21 ~qg~~c~~c~~~~h~~c~~~~~~C~~ 46 (272)
.|||+|++||+++|.+|-++.-.|+.
T Consensus 1559 pv~~~c~~c~~~~he~c~~~~~~~~~ 1584 (1732)
T KOG1090|consen 1559 PVSVHCKKCRIHVHEGCVNRNITIGN 1584 (1732)
T ss_pred cceecccccccccchhhccccccccc
Confidence 89999999999999999887777764
No 82
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=85.59 E-value=0.39 Score=27.98 Aligned_cols=16 Identities=19% Similarity=0.496 Sum_probs=15.0
Q ss_pred ceecCcCCcchhcccc
Q psy3210 23 PLCSQACYLACHKQCI 38 (272)
Q Consensus 23 g~~c~~c~~~~h~~c~ 38 (272)
+|.|+.|...+|.+|+
T Consensus 15 ~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 15 FYHCSECCFTLHVRCA 30 (30)
T ss_pred eEEeCCCCCeEcCccC
Confidence 9999999999999984
No 83
>KOG0600|consensus
Probab=84.71 E-value=0.35 Score=46.71 Aligned_cols=25 Identities=16% Similarity=0.056 Sum_probs=22.4
Q ss_pred eeeccchhhhhhhccCCCCCcccce
Q psy3210 243 YFFQLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 243 ~fP~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
-||..-++|++||++|.|||||+|.
T Consensus 158 ~~~~t~~REI~ILr~l~HpNIikL~ 182 (560)
T KOG0600|consen 158 GFPITAIREIKILRRLDHPNIIKLE 182 (560)
T ss_pred cchHHHHHHHHHHHhcCCCccccee
Confidence 3677888999999999999999985
No 84
>smart00287 SH3b Bacterial SH3 domain homologues.
Probab=84.43 E-value=1.6 Score=29.31 Aligned_cols=36 Identities=28% Similarity=0.369 Sum_probs=28.8
Q ss_pred ccCCCcEEEEeeeeCCcCCeEEEEeC-Ceeeeeeccchh
Q psy3210 213 PLKQGCQVIVLSKEGEQKGWWKGKID-ERVSYFFQLYWG 250 (272)
Q Consensus 213 sl~~Gd~i~v~~k~ge~~gwW~G~~~-g~~G~fP~~yVe 250 (272)
.+..|+.+.++++.+ .+|.+-+.. |..||++..++.
T Consensus 26 ~l~~g~~v~i~~~~~--~~W~~v~~~~g~~Gwi~~~~~~ 62 (63)
T smart00287 26 TLKKGDKVKVLGVDG--QDWAKITYGSGQRGYVPGYVVN 62 (63)
T ss_pred EecCCCEEEEEEccC--CceEEEEcCCCCEEEEEeeeec
Confidence 366899999997665 379998886 899999887764
No 85
>KOG0663|consensus
Probab=83.78 E-value=0.43 Score=44.06 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=21.9
Q ss_pred eeccchhhhhhhccCCCCCcccc
Q psy3210 244 FFQLYWGNFRLLSSLFIVPPVRL 266 (272)
Q Consensus 244 fP~~yVeE~~~mk~l~h~~~v~~ 266 (272)
||-.+++|++++.+++|+|||.+
T Consensus 118 FPItsLREIniLl~~~H~NIV~v 140 (419)
T KOG0663|consen 118 FPITSLREINILLKARHPNIVEV 140 (419)
T ss_pred CcchhHHHHHHHHhcCCCCeeee
Confidence 79999999999999999999986
No 86
>KOG1856|consensus
Probab=83.61 E-value=2.4 Score=44.73 Aligned_cols=81 Identities=16% Similarity=0.208 Sum_probs=59.4
Q ss_pred ccccEeeeeCCHHHHHHhccc--CCCceEE---EEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEecCCCcceEEeecc
Q psy3210 86 SEYLWFVGEMGREKATSLLER--EADGTYL---LRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQS 160 (272)
Q Consensus 86 ~~~~Wf~g~isR~~Ae~lL~~--~~~G~FL---VR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~~g~~~~~~i~~~ 160 (272)
..+.+|. .=++++.|++|.. ..++.+. +-.|. .+||.|.||++.+.+++|--|.-...| |++.+.
T Consensus 1203 ~nhkyf~-~Gt~~~~ek~L~~~k~~np~~~~Y~F~~s~-----~~PG~F~L~y~~~~k~~heyv~v~p~g----~~~rg~ 1272 (1299)
T KOG1856|consen 1203 TNHKYFF-TGTKKEVEKLLRDYKKVNPKKSVYFFCASH-----EHPGKFCLSYKPSSKPRHEYVKVVPEG----FRFRGQ 1272 (1299)
T ss_pred HhhhHhh-cCCHHHHHHHHHHHhccCCCeeeEEEEecc-----cCCceEEEEeccCCCccceeEEEcccc----eEEecc
Confidence 3444555 2348889999963 3344444 44553 568999999999999999888877775 666655
Q ss_pred cccchhhhhhhhhhccc
Q psy3210 161 RYFRSIVELICCYERNS 177 (272)
Q Consensus 161 ~~F~sL~eLV~~y~~~~ 177 (272)
.|+||.+|+.|++.+-
T Consensus 1273 -~f~tld~L~~~FK~h~ 1288 (1299)
T KOG1856|consen 1273 -NFGTLDELCRWFKRHY 1288 (1299)
T ss_pred -cchhHHHHHHHHHHHh
Confidence 5999999999998865
No 87
>KOG0658|consensus
Probab=83.57 E-value=0.49 Score=43.78 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=18.1
Q ss_pred hhhhhhccCCCCCcccceec
Q psy3210 250 GNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 250 eE~~~mk~l~h~~~v~~~~~ 269 (272)
.|+++|+++.|||||+|-+.
T Consensus 66 rEl~im~~l~HpNIV~L~~~ 85 (364)
T KOG0658|consen 66 RELQIMRKLDHPNIVRLLYF 85 (364)
T ss_pred HHHHHHHhcCCcCeeeEEEE
Confidence 59999999999999999764
No 88
>KOG1095|consensus
Probab=82.34 E-value=0.49 Score=49.62 Aligned_cols=22 Identities=18% Similarity=0.009 Sum_probs=20.2
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..|++|+.+|++++|||||+|-
T Consensus 740 ~~Fl~Ea~~m~~f~HpNiv~li 761 (1025)
T KOG1095|consen 740 SDFLKEALLMSKFDHPNIVSLI 761 (1025)
T ss_pred HHHHHHHHHHhcCCCcceeeEE
Confidence 4799999999999999999973
No 89
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=81.98 E-value=0.44 Score=29.13 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=11.8
Q ss_pred ceecCcCCcchhcccccC
Q psy3210 23 PLCSQACYLACHKQCIPH 40 (272)
Q Consensus 23 g~~c~~c~~~~h~~c~~~ 40 (272)
=..|..|++.||+.|-++
T Consensus 4 ll~C~~C~v~VH~~CYGv 21 (36)
T PF13831_consen 4 LLFCDNCNVAVHQSCYGV 21 (36)
T ss_dssp EEE-SSS--EEEHHHHT-
T ss_pred eEEeCCCCCcCChhhCCc
Confidence 468999999999999544
No 90
>KOG3565|consensus
Probab=80.80 E-value=0.43 Score=47.84 Aligned_cols=56 Identities=16% Similarity=0.313 Sum_probs=46.7
Q ss_pred eeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEE--eCCeeeeeeccchhhh
Q psy3210 196 IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK--IDERVSYFFQLYWGNF 252 (272)
Q Consensus 196 ~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~--~~g~~G~fP~~yVeE~ 252 (272)
..+.|+|.|++...+++++..|+++.++...- +.||=+++ .++..|.+|..|++-.
T Consensus 579 ~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~-g~gwt~~r~~~~~~~g~~Ptsyl~~~ 636 (640)
T KOG3565|consen 579 RTSKALYAFEGQSEGTISIDPGEILQVIEEDK-GDGWTRGRLEPNGEKGYVPTSYLDVT 636 (640)
T ss_pred cceecccCcCCCCCCccccCcchhHHHHhhcc-cCCCCCCCCCCCCcCCCCCccccccc
Confidence 45789999999999999999999988885432 27898888 6689999999999843
No 91
>KOG4257|consensus
Probab=80.35 E-value=0.6 Score=46.51 Aligned_cols=22 Identities=5% Similarity=0.086 Sum_probs=20.2
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+|++|+-+|+++.|||||||-
T Consensus 436 ekflqEa~iMrnfdHphIikLI 457 (974)
T KOG4257|consen 436 EKFLQEASIMRNFDHPHIIKLI 457 (974)
T ss_pred HHHHHHHHHHHhCCCcchhhee
Confidence 4799999999999999999983
No 92
>KOG3705|consensus
Probab=80.10 E-value=1.1 Score=42.03 Aligned_cols=88 Identities=17% Similarity=0.087 Sum_probs=52.8
Q ss_pred ccchhhhhhhhhhcccc----cccccccccccccc-ceeeeeeeeccCCCCCCCCCccCCCcEEEEeeeeCCcCCeEEEE
Q psy3210 162 YFRSIVELICCYERNSL----IENFIGLNVRLQLP-FRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236 (272)
Q Consensus 162 ~F~sL~eLV~~y~~~~L----~~~~~~l~~~L~~P-~~~~~~~alydf~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~ 236 (272)
+|.|-+.-|.|--...+ ...|..|+..--+- .....++++++-.++..+|+.++.||+|-|.+.- +.|.-+|.
T Consensus 471 TFSSQVCRvaYEimQt~~pDa~~~FhSLDDIYYfGGQnAHn~ivi~aH~prt~~ei~l~vGD~vgvAGNH--WdGySKG~ 548 (580)
T KOG3705|consen 471 TFSSQVCRVAYEIMQTSGPDAGSKFHSLDDIYYFGGQNAHNVIVIEAHIPRTNKEIDLKVGDKVGVAGNH--WDGYSKGT 548 (580)
T ss_pred echHHHHHHHHHHHhccCCCcccccccccceeeecCccccceEEEEecCCCcccccCcccCCeeeecccc--cccccccc
Confidence 58887777766432221 12233333211111 1223467889999999999999999998776432 13444555
Q ss_pred eC--Ceeeeeeccchhh
Q psy3210 237 ID--ERVSYFFQLYWGN 251 (272)
Q Consensus 237 ~~--g~~G~fP~~yVeE 251 (272)
.. ++.|+||+-=|+|
T Consensus 549 Nr~t~~~GlfPSyKvre 565 (580)
T KOG3705|consen 549 NRQTYKEGLFPSYKVRE 565 (580)
T ss_pred cccccccCCCccceeee
Confidence 43 6899999855554
No 93
>KOG1011|consensus
Probab=80.10 E-value=0.31 Score=48.26 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=25.3
Q ss_pred hhcccCCCceecCcCCcchhccc-ccCCCCC
Q psy3210 15 TLKSRGLRPLCSQACYLACHKQC-IPHTGRC 44 (272)
Q Consensus 15 ~~~g~~~qg~~c~~c~~~~h~~c-~~~~~~C 44 (272)
||=|+..||.+|.-|+..||.+| -...+.|
T Consensus 192 llwglarqglrctqc~vk~hdkc~ell~adc 222 (1283)
T KOG1011|consen 192 LLWGLARQGLRCTQCQVKVHDKCRELLSADC 222 (1283)
T ss_pred HHHHHhhcccchhhccccHHHHHHHHhhhHH
Confidence 68899999999999999999999 3334555
No 94
>KOG0591|consensus
Probab=79.71 E-value=0.56 Score=42.46 Aligned_cols=21 Identities=24% Similarity=0.047 Sum_probs=19.1
Q ss_pred ccchhhhhhhccCCCCCcccc
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRL 266 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~ 266 (272)
...|+|+.++++|.|||||+.
T Consensus 63 q~~v~Ei~lLkQL~HpNIVqY 83 (375)
T KOG0591|consen 63 QDCVKEISLLKQLNHPNIVQY 83 (375)
T ss_pred HHHHHHHHHHHhcCCchHHHH
Confidence 467999999999999999985
No 95
>PRK10884 SH3 domain-containing protein; Provisional
Probab=79.44 E-value=2.5 Score=36.37 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=31.8
Q ss_pred ccCCCcEEEEeeeeCCcCCeEEEEe-CCeeeeeeccchhhhh
Q psy3210 213 PLKQGCQVIVLSKEGEQKGWWKGKI-DERVSYFFQLYWGNFR 253 (272)
Q Consensus 213 sl~~Gd~i~v~~k~ge~~gwW~G~~-~g~~G~fP~~yVeE~~ 253 (272)
++..|+.+++++..++ .||.+-+. +|+.||+++.|+....
T Consensus 49 ~l~~G~~v~vl~~~~~-~~w~~Vr~~~G~~GWV~~~~Ls~~p 89 (206)
T PRK10884 49 TLNAGEEVTLLQVNAN-TNYAQIRDSKGRTAWIPLKQLSTTP 89 (206)
T ss_pred EEcCCCEEEEEEEcCC-CCEEEEEeCCCCEEeEEHHHhcCCc
Confidence 4778999999987653 47998875 5899999999987543
No 96
>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.
Probab=79.20 E-value=4.4 Score=29.89 Aligned_cols=43 Identities=14% Similarity=0.119 Sum_probs=26.5
Q ss_pred CCCCCCCccCCCcEEEEeeeeCCcCCeEEEEe-CCeeeeeeccchh
Q psy3210 206 PTEANQLPLKQGCQVIVLSKEGEQKGWWKGKI-DERVSYFFQLYWG 250 (272)
Q Consensus 206 ~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~-~g~~G~fP~~yVe 250 (272)
.+..-+|.+..||+++|+.... .+-|-.+. .|+-|+++.+++-
T Consensus 27 k~G~kDLpi~~GE~LeVI~~t~--~~kvlCRN~~GKYGYV~~~~L~ 70 (89)
T PF14603_consen 27 KWGGKDLPIKPGEILEVIQFTD--DNKVLCRNSEGKYGYVLRSHLL 70 (89)
T ss_dssp ---TTB----TT-B-EEEEESS--SSEEEEEETTTEEEEEEGGGS-
T ss_pred cCCcccCCcCCCCEEEEEEeCC--CCeEEEeCCCCceeEEEHHHcc
Confidence 4567899999999999997665 45666665 5899999999884
No 97
>KOG0957|consensus
Probab=78.98 E-value=1.2 Score=42.77 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.8
Q ss_pred eecCcCCcchhcccccCCCC
Q psy3210 24 LCSQACYLACHKQCIPHTGR 43 (272)
Q Consensus 24 ~~c~~c~~~~h~~c~~~~~~ 43 (272)
..|.+|||.||.+|-++...
T Consensus 137 ~qCd~CGi~VHEgCYGv~dn 156 (707)
T KOG0957|consen 137 LQCDKCGINVHEGCYGVLDN 156 (707)
T ss_pred eeccccCceecccccccccc
Confidence 46999999999999887633
No 98
>KOG1094|consensus
Probab=78.24 E-value=0.86 Score=45.06 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=20.3
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+|.+|+++|.+|.|||||+|.
T Consensus 580 ~~F~kEIkiLsqLkhPNIveLv 601 (807)
T KOG1094|consen 580 NDFLKEIKILSRLKHPNIVELL 601 (807)
T ss_pred HHHHHHHHHHhccCCCCeeEEE
Confidence 4799999999999999999984
No 99
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=77.25 E-value=0.75 Score=29.27 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=15.0
Q ss_pred cccCCCceecC--cCCcchhcccccC
Q psy3210 17 KSRGLRPLCSQ--ACYLACHKQCIPH 40 (272)
Q Consensus 17 ~g~~~qg~~c~--~c~~~~h~~c~~~ 40 (272)
|.+.-||.+|. .|++..|..|+..
T Consensus 5 ~~iv~~G~~C~~~~C~~r~H~~C~~~ 30 (43)
T PF08746_consen 5 KEIVTQGQRCSNRDCNVRLHDDCFKK 30 (43)
T ss_dssp -SB-SSSEE-SS--S--EE-HHHHHH
T ss_pred chhHeeeccCCCCccCchHHHHHHHH
Confidence 67889999999 5999999999654
No 100
>KOG0586|consensus
Probab=75.51 E-value=1.1 Score=44.00 Aligned_cols=20 Identities=20% Similarity=0.074 Sum_probs=17.6
Q ss_pred chhhhhhhccCCCCCcccce
Q psy3210 248 YWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~~ 267 (272)
+-.|+++|+.|+|||||||-
T Consensus 102 ~~rev~imk~l~HPnIvkl~ 121 (596)
T KOG0586|consen 102 LGREVDIMKSLNHPNIVKLF 121 (596)
T ss_pred HHHHHHHHHhcCCcceeeee
Confidence 45799999999999999983
No 101
>KOG0662|consensus
Probab=75.42 E-value=0.84 Score=38.75 Aligned_cols=24 Identities=25% Similarity=0.054 Sum_probs=22.8
Q ss_pred eeccchhhhhhhccCCCCCcccce
Q psy3210 244 FFQLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 244 fP~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
+|+.-++|+-++|.|.|.|||||+
T Consensus 44 vpssalreicllkelkhknivrl~ 67 (292)
T KOG0662|consen 44 VPSSALREICLLKELKHKNIVRLH 67 (292)
T ss_pred CcHHHHHHHHHHHHhhhcceeehh
Confidence 699999999999999999999996
No 102
>KOG0193|consensus
Probab=73.75 E-value=1.8 Score=42.82 Aligned_cols=45 Identities=11% Similarity=0.088 Sum_probs=33.2
Q ss_pred EeeeeCCc-CCeEEEEeCC----eeeeeec---cchhhhhhhccCCCCCcccc
Q psy3210 222 VLSKEGEQ-KGWWKGKIDE----RVSYFFQ---LYWGNFRLLSSLFIVPPVRL 266 (272)
Q Consensus 222 v~~k~ge~-~gwW~G~~~g----~~G~fP~---~yVeE~~~mk~l~h~~~v~~ 266 (272)
..+.+|.+ .|.|.|++.- .++..|+ .|-.|+.++|+=+|.||+=+
T Consensus 401 GsGsFGtV~Rg~whGdVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLF 453 (678)
T KOG0193|consen 401 GSGSFGTVYRGRWHGDVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLF 453 (678)
T ss_pred ccccccceeecccccceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheee
Confidence 55677776 8899998762 3344443 56779999999999999743
No 103
>KOG0595|consensus
Probab=73.63 E-value=1.3 Score=41.79 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=18.4
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
+...|++++|++.|+|||+|-
T Consensus 55 ~L~~Ei~iLkel~H~nIV~l~ 75 (429)
T KOG0595|consen 55 LLLSEIKILKELKHPNIVRLL 75 (429)
T ss_pred HHHHHHHHHHhcCCcceeeEE
Confidence 456699999999999999984
No 104
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=73.32 E-value=0.97 Score=26.20 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=8.9
Q ss_pred CCceecCcCCcchhcccc
Q psy3210 21 LRPLCSQACYLACHKQCI 38 (272)
Q Consensus 21 ~qg~~c~~c~~~~h~~c~ 38 (272)
.-.|.|..|...+|++|+
T Consensus 13 ~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 13 GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --EEE-TTT-----HHHH
T ss_pred CceEECccCCCccChhcC
Confidence 468999999999999984
No 105
>KOG0696|consensus
Probab=72.53 E-value=1.8 Score=41.27 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=28.9
Q ss_pred heehhcccCCCceecCcCCcchhccccc-CCCCCCCC
Q psy3210 12 SIVTLKSRGLRPLCSQACYLACHKQCIP-HTGRCGTG 47 (272)
Q Consensus 12 ~~~~~~g~~~qg~~c~~c~~~~h~~c~~-~~~~C~~~ 47 (272)
-+-++=|..+||..|.+|...|||.|-+ ++=.|.+.
T Consensus 62 CkDFiwGfgKQGfQCqvC~fvvHkrChefVtF~CPGa 98 (683)
T KOG0696|consen 62 CKDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGA 98 (683)
T ss_pred hhhheeccccCceeeeEEeehhhhhhcceEEEECCCC
Confidence 3456779999999999999999999944 45677654
No 106
>KOG0584|consensus
Probab=72.50 E-value=0.91 Score=44.83 Aligned_cols=56 Identities=23% Similarity=0.206 Sum_probs=33.9
Q ss_pred cCCCcEEEEeeeeCCcCCe---EEEEeCCeeeeee---ccchhhhhhhccCCCCCcccceec
Q psy3210 214 LKQGCQVIVLSKEGEQKGW---WKGKIDERVSYFF---QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 214 l~~Gd~i~v~~k~ge~~gw---W~G~~~g~~G~fP---~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
|.+|..-+|..-+++..|. |.-..-....-.| ..|-+|++++|.|.|+||||+-.|
T Consensus 48 LGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~S 109 (632)
T KOG0584|consen 48 LGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDS 109 (632)
T ss_pred cccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeh
Confidence 5567766777666654221 3221111111122 247789999999999999999543
No 107
>KOG0694|consensus
Probab=71.51 E-value=1.7 Score=43.44 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=29.8
Q ss_pred hhcccCCCceecCcCCcchhccc-ccCCCCCCCC
Q psy3210 15 TLKSRGLRPLCSQACYLACHKQC-IPHTGRCGTG 47 (272)
Q Consensus 15 ~~~g~~~qg~~c~~c~~~~h~~c-~~~~~~C~~~ 47 (272)
+|.|+..||-.|..|++.||..| -.+.+.|+.+
T Consensus 250 ~L~r~~qqGlkCs~Cg~n~H~~c~~~va~~CG~s 283 (694)
T KOG0694|consen 250 VLYRLRQQGLKCSTCGRNVHNRCVENLAPNCGGS 283 (694)
T ss_pred hhhhhcccCeeehhhhccccHHHHHhcccCCCCc
Confidence 67899999999999999999999 7778899875
No 108
>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play
Probab=71.28 E-value=5.2 Score=35.50 Aligned_cols=22 Identities=23% Similarity=0.003 Sum_probs=19.4
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+++|+++++++.|+|||++.-
T Consensus 50 ~~~~E~~~l~~l~h~~iv~~~~ 71 (309)
T cd07872 50 TAIREVSLLKDLKHANIVTLHD 71 (309)
T ss_pred hHHHHHHHHHhCCCCCcceEEE
Confidence 5778999999999999999853
No 109
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=70.73 E-value=1.1 Score=31.09 Aligned_cols=20 Identities=35% Similarity=0.796 Sum_probs=16.3
Q ss_pred ecCcCCcchhcccccCCCCC
Q psy3210 25 CSQACYLACHKQCIPHTGRC 44 (272)
Q Consensus 25 ~c~~c~~~~h~~c~~~~~~C 44 (272)
.|+.||+.+|-.||+-..-|
T Consensus 45 ~Cq~CGAFCHDDCIgpskLC 64 (69)
T PF13922_consen 45 MCQGCGAFCHDDCIGPSKLC 64 (69)
T ss_pred HHhhccchhccccccHHHHh
Confidence 59999999999998755443
No 110
>KOG1187|consensus
Probab=70.68 E-value=1.8 Score=40.34 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=20.1
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+|..|+.++.+++|+|||+|.
T Consensus 116 ~eF~~Ei~~ls~l~H~Nlv~Ll 137 (361)
T KOG1187|consen 116 REFLNEVEILSRLRHPNLVKLL 137 (361)
T ss_pred hHHHHHHHHHhcCCCcCcccEE
Confidence 4599999999999999999984
No 111
>PHA03211 serine/threonine kinase US3; Provisional
Probab=70.12 E-value=5.4 Score=38.45 Aligned_cols=48 Identities=15% Similarity=0.036 Sum_probs=30.4
Q ss_pred EEeeeeCCc--CCeEEEEeCC---eeee---eeccchhhhhhhccCCCCCccccee
Q psy3210 221 IVLSKEGEQ--KGWWKGKIDE---RVSY---FFQLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 221 ~v~~k~ge~--~gwW~G~~~g---~~G~---fP~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+.+.+|.+ ..+|++.... +..+ ....++.|+++|+++.|+|||++.-
T Consensus 172 ~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~~~~~~E~~iL~~L~HpnIv~l~~ 227 (461)
T PHA03211 172 AIHRALTPGSEGCVFESSHPDYPQRVVVKAGWYASSVHEARLLRRLSHPAVLALLD 227 (461)
T ss_pred EEEEEEccCCCeEEEEEEECCCCCEEEEecccccCHHHHHHHHHHCCCCCCCcEEE
Confidence 345555543 2357776542 1111 1234678999999999999999874
No 112
>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase. Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa
Probab=69.32 E-value=3.9 Score=35.15 Aligned_cols=24 Identities=13% Similarity=0.130 Sum_probs=20.6
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..|.+|+++|+++.|+|+|+++-.
T Consensus 46 ~~~~~e~~~l~~l~~~~i~~~~~~ 69 (260)
T cd05073 46 EAFLAEANVMKTLQHDKLVKLHAV 69 (260)
T ss_pred HHHHHHHHHHHhcCCCCcceEEEE
Confidence 457889999999999999998644
No 113
>PHA03212 serine/threonine kinase US3; Provisional
Probab=69.13 E-value=6.2 Score=36.93 Aligned_cols=22 Identities=9% Similarity=-0.087 Sum_probs=19.6
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++|+++.|||||++.-
T Consensus 129 ~~~~E~~il~~l~HpnIv~~~~ 150 (391)
T PHA03212 129 GTATEAHILRAINHPSIIQLKG 150 (391)
T ss_pred hhHHHHHHHHhCCCCCCCCEeE
Confidence 4678999999999999999964
No 114
>COG3103 SH3 domain protein [Signal transduction mechanisms]
Probab=68.57 E-value=7.6 Score=33.38 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=34.2
Q ss_pred ccCCCcEEEEeeeeCCcCCeEEEEeC-Ceeeeeeccchhhhhhh
Q psy3210 213 PLKQGCQVIVLSKEGEQKGWWKGKID-ERVSYFFQLYWGNFRLL 255 (272)
Q Consensus 213 sl~~Gd~i~v~~k~ge~~gwW~G~~~-g~~G~fP~~yVeE~~~m 255 (272)
++++||.++|+++.+. .||...... |+.||++..++.+....
T Consensus 49 ~i~~Ge~vtvl~~~~~-~~~~qI~~~~g~t~wi~~~~lt~e~s~ 91 (205)
T COG3103 49 SIKAGEKVTVLGTDGN-TGYYQIRDSSGRTGWILSKNLTSEPSS 91 (205)
T ss_pred EecCCcEEEEEEEcCc-ccEEEEEecCCceEEEechhhcccccc
Confidence 4778999999998885 479999886 89999999988755443
No 115
>KOG3508|consensus
Probab=68.57 E-value=6.3 Score=40.93 Aligned_cols=55 Identities=24% Similarity=0.298 Sum_probs=39.8
Q ss_pred cccEeeeeCCHHHHHHhccc-CCCceEEEEeCCCCCCCCCCCceEEEEeeC-CeeeEEEEEE
Q psy3210 87 EYLWFVGEMGREKATSLLER-EADGTYLLRIRPQGPTHPNETIYALSLKTD-EKVKHMKVYE 146 (272)
Q Consensus 87 ~~~Wf~g~isR~~Ae~lL~~-~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~-~~v~H~~I~~ 146 (272)
.-.||+|++.|.-|+..+.. ...|.|+||++... ++.+.++.--. +.+-|.++..
T Consensus 80 ~~~~~~~~lrr~i~e~r~r~~e~s~~~wi~e~~~l-----p~~~~l~~~~~~d~~l~~r~~s 136 (932)
T KOG3508|consen 80 ERKWYMENLRRTIAESRLRRAENSGSYWIREAKRL-----PGKGKLSCLLQLDGTLYARTIS 136 (932)
T ss_pred hhhhhhcchhhhcccchhhccCCceeEEeeccCcC-----CCcceeehhhccchhHHhhhhh
Confidence 34799999999999999765 45689999999755 46676665432 2266666654
No 116
>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa
Probab=68.32 E-value=4 Score=34.97 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=20.2
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..+.+|+++++.+.|+|+|++...
T Consensus 46 ~~~~~e~~~l~~l~h~~i~~~~~~ 69 (261)
T cd05072 46 QAFLEEANLMKTLQHDKLVRLYAV 69 (261)
T ss_pred HHHHHHHHHHHhCCCCCeeeEEEE
Confidence 356789999999999999998643
No 117
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=68.10 E-value=18 Score=26.05 Aligned_cols=42 Identities=14% Similarity=0.301 Sum_probs=31.5
Q ss_pred cEeeeeCCHHHHHHhccc--CCCceEEEEeCCCCCCCCCCCceEEEEee
Q psy3210 89 LWFVGEMGREKATSLLER--EADGTYLLRIRPQGPTHPNETIYALSLKT 135 (272)
Q Consensus 89 ~Wf~g~isR~~Ae~lL~~--~~~G~FLVR~s~~~~~~~~~~~y~LSv~~ 135 (272)
|=|...|+-+|+...|+. ...|+|+.|-|. +.-|.++|-...
T Consensus 3 pgY~AFlTYdevk~~L~~~~~kpGsYiFRlSC-----TrLGQWAIGyV~ 46 (86)
T PF02762_consen 3 PGYMAFLTYDEVKARLQHYRDKPGSYIFRLSC-----TRLGQWAIGYVT 46 (86)
T ss_dssp TTBETT--HHHHHHHHGGGTTSTTEEEEEEES-----SSTTSEEEEEEE
T ss_pred CceeEEEeHHHHHHHHHHHhCCcccEEEeecc-----ccccceeEEEEc
Confidence 346667889999999975 567999999997 446899887655
No 118
>KOG1025|consensus
Probab=67.90 E-value=2 Score=44.19 Aligned_cols=21 Identities=19% Similarity=-0.035 Sum_probs=19.6
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
++++||-+|.++.||||+||.
T Consensus 744 e~LdeAl~masldHpnl~RLL 764 (1177)
T KOG1025|consen 744 ELLDEALRMASLDHPNLLRLL 764 (1177)
T ss_pred HHHHHHHHHhcCCCchHHHHh
Confidence 689999999999999999985
No 119
>PRK00420 hypothetical protein; Validated
Probab=67.42 E-value=1.8 Score=33.59 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=34.1
Q ss_pred cccchheehhcccCCCceecCcCCcchh--cccccCCCCCCC
Q psy3210 7 NLRSISIVTLKSRGLRPLCSQACYLACH--KQCIPHTGRCGT 46 (272)
Q Consensus 7 ~~~~~~~~~~~g~~~qg~~c~~c~~~~h--~~c~~~~~~C~~ 46 (272)
..+.++..||+|--..+..|+.||...= ++.--.++.|+.
T Consensus 7 ~~k~~a~~Ll~Ga~ml~~~CP~Cg~pLf~lk~g~~~Cp~Cg~ 48 (112)
T PRK00420 7 IVKKAAELLLKGAKMLSKHCPVCGLPLFELKDGEVVCPVHGK 48 (112)
T ss_pred HHHHHHHHHHhHHHHccCCCCCCCCcceecCCCceECCCCCC
Confidence 4567888999999999999999998776 577788899987
No 120
>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.
Probab=67.22 E-value=12 Score=24.48 Aligned_cols=35 Identities=29% Similarity=0.518 Sum_probs=27.7
Q ss_pred CccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccch
Q psy3210 212 LPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYW 249 (272)
Q Consensus 212 Lsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yV 249 (272)
..+.+|..+.++...+ +|.+-+.+|..||++...|
T Consensus 19 ~~l~~g~~v~v~~~~~---~W~~V~~~g~~GWv~~~~l 53 (55)
T PF06347_consen 19 ARLEPGVPVRVIECRG---GWCKVRADGRTGWVHKSLL 53 (55)
T ss_pred EEECCCCEEEEEEccC---CeEEEEECCeEEeEEeeec
Confidence 3467788888886654 6999998899999988654
No 121
>KOG1026|consensus
Probab=67.11 E-value=2.1 Score=43.68 Aligned_cols=22 Identities=32% Similarity=0.205 Sum_probs=20.4
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+|-+||.+|..|.|+|||||.
T Consensus 534 ~dF~REaeLla~l~H~nIVrLl 555 (774)
T KOG1026|consen 534 QDFRREAELLAELQHPNIVRLL 555 (774)
T ss_pred HHHHHHHHHHHhccCCCeEEEE
Confidence 5799999999999999999984
No 122
>KOG0593|consensus
Probab=66.77 E-value=1.9 Score=39.45 Aligned_cols=19 Identities=26% Similarity=0.193 Sum_probs=17.4
Q ss_pred chhhhhhhccCCCCCcccc
Q psy3210 248 YWGNFRLLSSLFIVPPVRL 266 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~ 266 (272)
=++|++++|+|.|+|||.|
T Consensus 48 AlREIrmLKqLkH~NLVnL 66 (396)
T KOG0593|consen 48 ALREIRMLKQLKHENLVNL 66 (396)
T ss_pred HHHHHHHHHhcccchHHHH
Confidence 4789999999999999976
No 123
>KOG0033|consensus
Probab=66.65 E-value=2.3 Score=37.92 Aligned_cols=23 Identities=26% Similarity=0.001 Sum_probs=19.4
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..-+||+|-+.|.|||||||+=+
T Consensus 56 ~l~rEarIC~~LqHP~IvrL~~t 78 (355)
T KOG0033|consen 56 KLEREARICRKLQHPNIVRLHDS 78 (355)
T ss_pred HHHHHHHHHHhcCCCcEeehhhh
Confidence 34569999999999999999743
No 124
>KOG4250|consensus
Probab=66.17 E-value=2.1 Score=42.98 Aligned_cols=20 Identities=20% Similarity=0.203 Sum_probs=17.7
Q ss_pred chhhhhhhccCCCCCcccce
Q psy3210 248 YWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~~ 267 (272)
-..|+++||||.|+|||++-
T Consensus 58 ~~~EieilkKLnh~NIVk~f 77 (732)
T KOG4250|consen 58 WCREIEILKKLNHPNIVKLF 77 (732)
T ss_pred HHHHHHHHHHcCchhhhhhc
Confidence 46799999999999999873
No 125
>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r
Probab=65.54 E-value=3 Score=35.82 Aligned_cols=24 Identities=13% Similarity=0.023 Sum_probs=20.7
Q ss_pred eccchhhhhhhccCCCCCccccee
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
+..|..|+++|+++.|+|++++.-
T Consensus 45 ~~~~~~E~~~l~~l~~~~i~~~~~ 68 (260)
T cd05070 45 PESFLEEAQIMKKLRHDKLVQLYA 68 (260)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEe
Confidence 456888999999999999999863
No 126
>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a
Probab=63.31 E-value=6.3 Score=33.79 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=20.6
Q ss_pred eccchhhhhhhccCCCCCccccee
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+|..|+++++++.|+|++++.-
T Consensus 45 ~~~~~~e~~~l~~l~h~~i~~~~~ 68 (261)
T cd05068 45 PKDFLAEAQIMKKLRHPKLIQLYA 68 (261)
T ss_pred HHHHHHHHHHHHHCCCCCccceeE
Confidence 356888999999999999999763
No 127
>KOG4384|consensus
Probab=63.15 E-value=3.7 Score=37.89 Aligned_cols=62 Identities=26% Similarity=0.424 Sum_probs=47.1
Q ss_pred ccccccceeeeeeeeccC--CCCCCCCCccCCCcEEEEeeeeCCcCCeEEEEeCCeeeeeeccchhh
Q psy3210 187 VRLQLPFRQIIAVAEFDF--CPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGN 251 (272)
Q Consensus 187 ~~L~~P~~~~~~~alydf--~~~~~~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~g~~G~fP~~yVeE 251 (272)
+....|+.. .+++.=+| ...+.++|.+++||+|.++.+-+ .|-|.|-.+++.|-|+-.||.+
T Consensus 129 ~~y~~p~c~-~~~~~t~~tp~p~~~d~lk~~~~~~i~~~~~~~--~~~~~g~~~~kv~~f~~~~v~~ 192 (361)
T KOG4384|consen 129 PPYSGPFCG-RARVHTDFTPSPYDTDSLKIKKGDIIDIIEKPP--MGTWLGLLNNKVGSFKFIYVDV 192 (361)
T ss_pred CCCCCCccc-cccccccCCCCcccccchhhcccchhhccccCc--cccccccccCcccccccceecc
Confidence 344455432 24444455 45578999999999999998887 7899999999999999888873
No 128
>KOG3812|consensus
Probab=63.09 E-value=2.4 Score=38.98 Aligned_cols=36 Identities=11% Similarity=0.367 Sum_probs=30.1
Q ss_pred CCCccCCCcEEEEeeeeCCcCCeEEEEeC---Ceeeeeecc
Q psy3210 210 NQLPLKQGCQVIVLSKEGEQKGWWKGKID---ERVSYFFQL 247 (272)
Q Consensus 210 ~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~---g~~G~fP~~ 247 (272)
..++|...|++.|..|+. .+||-|++. ...||+|+.
T Consensus 80 ~aisF~~kDFlHIkeKyn--nDWWIGRlVkeg~e~gFiPsp 118 (475)
T KOG3812|consen 80 HAISFEAKDFLHIKEKYN--NDWWIGRLVKEGCEIGFIPSP 118 (475)
T ss_pred ceeeeccccceeehhhcc--cchhHHHHhhcCCccccccch
Confidence 457899999999999998 569999975 478999973
No 129
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=63.01 E-value=11 Score=25.27 Aligned_cols=24 Identities=38% Similarity=0.800 Sum_probs=19.1
Q ss_pred ccCCCcEEEEeeeeCCcCCeEEEEeC
Q psy3210 213 PLKQGCQVIVLSKEGEQKGWWKGKID 238 (272)
Q Consensus 213 sl~~Gd~i~v~~k~ge~~gwW~G~~~ 238 (272)
.|+.||.|.+....+ .+||.|.+.
T Consensus 2 ~~~~G~~Ve~~~~~~--~~W~~a~V~ 25 (61)
T smart00743 2 DFKKGDRVEVFSKEE--DSWWEAVVT 25 (61)
T ss_pred CcCCCCEEEEEECCC--CEEEEEEEE
Confidence 478899999986544 679999875
No 130
>PHA02988 hypothetical protein; Provisional
Probab=62.67 E-value=3.3 Score=36.54 Aligned_cols=22 Identities=5% Similarity=-0.082 Sum_probs=19.1
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.|.+|+++|+++.|+|||++.-
T Consensus 64 ~~~~E~~~l~~l~h~nIv~~~g 85 (283)
T PHA02988 64 ITENEIKNLRRIDSNNILKIYG 85 (283)
T ss_pred HHHHHHHHHHhcCCCCEEEEee
Confidence 4558999999999999999873
No 131
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=61.68 E-value=11 Score=26.99 Aligned_cols=28 Identities=36% Similarity=0.736 Sum_probs=19.6
Q ss_pred CCccCCCcEEEEeeee----CCcCCeEEEEeC
Q psy3210 211 QLPLKQGCQVIVLSKE----GEQKGWWKGKID 238 (272)
Q Consensus 211 ELsl~~Gd~i~v~~k~----ge~~gwW~G~~~ 238 (272)
-|+++.||.+.|.... ..+..||.|++-
T Consensus 3 FL~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi 34 (75)
T PF11302_consen 3 FLSVKPGDTVIVQDEQEVGQKQDKDWWMGQVI 34 (75)
T ss_pred ccccCCCCEEEEecCccccccCCCCcEEEEEE
Confidence 4778899998776432 112789999863
No 132
>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t
Probab=61.34 E-value=6.7 Score=33.50 Aligned_cols=23 Identities=13% Similarity=0.089 Sum_probs=20.1
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++++++.|+|+++++-
T Consensus 46 ~~~~~e~~~l~~l~h~~i~~~~~ 68 (261)
T cd05034 46 EAFLQEAQIMKKLRHDKLVQLYA 68 (261)
T ss_pred HHHHHHHHHHhhCCCCCEeeeee
Confidence 46788999999999999999863
No 133
>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src. Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo
Probab=61.23 E-value=6.7 Score=33.82 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=20.4
Q ss_pred eccchhhhhhhccCCCCCccccee
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
+..|..|+++++.+.|+|++++.-
T Consensus 45 ~~~~~~E~~~l~~l~~~~i~~~~~ 68 (262)
T cd05071 45 PEAFLQEAQVMKKLRHEKLVQLYA 68 (262)
T ss_pred HHHHHHHHHHHHhCCCCCcceEEE
Confidence 345788999999999999999864
No 134
>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl
Probab=60.67 E-value=10 Score=33.46 Aligned_cols=23 Identities=22% Similarity=-0.032 Sum_probs=19.7
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++++++.|+|||++.=
T Consensus 49 ~~~~~E~~~l~~l~h~nI~~~~~ 71 (301)
T cd07873 49 CTAIREVSLLKDLKHANIVTLHD 71 (301)
T ss_pred hHHHHHHHHHHhcCCCCcceEEE
Confidence 35678999999999999999863
No 135
>KOG2996|consensus
Probab=60.51 E-value=3.8 Score=40.38 Aligned_cols=40 Identities=23% Similarity=0.452 Sum_probs=31.2
Q ss_pred CCCccCCCcEEEEeeeeCCcCCeEEEEeC--Ceeeeeeccchh
Q psy3210 210 NQLPLKQGCQVIVLSKEGEQKGWWKGKID--ERVSYFFQLYWG 250 (272)
Q Consensus 210 ~ELsl~~Gd~i~v~~k~ge~~gwW~G~~~--g~~G~fP~~yVe 250 (272)
--|.|..||+++++.-..+ ..||.|... +..|+||++=|+
T Consensus 625 P~l~~~~gdvlel~~~d~~-s~~w~gr~~~sr~sg~fpss~vk 666 (865)
T KOG2996|consen 625 PRLVLQEGDVLELLKGDAE-SSWWEGRNHGSRESGNFPSSTVK 666 (865)
T ss_pred CceEecCCceeehhcCCCC-CcccccCCccCCccCCCCccccC
Confidence 4577889999988854433 689999976 478999998776
No 136
>KOG0193|consensus
Probab=58.15 E-value=3.1 Score=41.29 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=27.3
Q ss_pred hhcccCCCceecCcCCcchhccc-ccCCCCCCC
Q psy3210 15 TLKSRGLRPLCSQACYLACHKQC-IPHTGRCGT 46 (272)
Q Consensus 15 ~~~g~~~qg~~c~~c~~~~h~~c-~~~~~~C~~ 46 (272)
+=++++.+|.+|.-|+..+|+.| -.++..|..
T Consensus 195 ~~~~~l~~gfrC~~C~~KfHq~Cs~~vp~~C~~ 227 (678)
T KOG0193|consen 195 CCNKFLFTGFRCQTCGYKFHQSCSPRVPTSCVN 227 (678)
T ss_pred hcchhhhcccccCCCCCccccccCCCCCCCCCC
Confidence 34678899999999999999999 667788873
No 137
>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h
Probab=57.82 E-value=9.7 Score=32.51 Aligned_cols=25 Identities=12% Similarity=-0.035 Sum_probs=21.8
Q ss_pred eccchhhhhhhccCCCCCcccceec
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..+|..|+++|++++|+|||++...
T Consensus 43 ~~~~~~e~~~l~~l~h~~i~~~~~~ 67 (256)
T cd05114 43 EEDFIEEAKVMMKLSHPKLVQLYGV 67 (256)
T ss_pred HHHHHHHHHHHHHCCCCCceeEEEE
Confidence 4578889999999999999998754
No 138
>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt
Probab=57.69 E-value=4.6 Score=35.28 Aligned_cols=23 Identities=9% Similarity=0.050 Sum_probs=20.5
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..|.+|+.++++++|+|||+++-
T Consensus 61 ~~~~~~~~~~~~l~h~niv~~~~ 83 (274)
T cd05076 61 LAFFETASLMSQVSHIHLAFVHG 83 (274)
T ss_pred HHHHHHHHHHhcCCCCCeeeEEE
Confidence 46888999999999999999875
No 139
>PHA03209 serine/threonine kinase US3; Provisional
Probab=57.65 E-value=13 Score=34.05 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=18.4
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
....|+.+++++.|+|||++.
T Consensus 103 ~~~~E~~~l~~l~h~~iv~~~ 123 (357)
T PHA03209 103 TTLIEAMLLQNVNHPSVIRMK 123 (357)
T ss_pred ccHHHHHHHHhCCCCCCcChh
Confidence 346799999999999999986
No 140
>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk. Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr
Probab=57.13 E-value=7.2 Score=33.41 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.7
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..|..|+.+|+++.|+|++++.
T Consensus 46 ~~~~~E~~~l~~l~h~~i~~~~ 67 (260)
T cd05067 46 EAFLAEANLMKQLQHPRLVRLY 67 (260)
T ss_pred HHHHHHHHHHHhcCCcCeeeEE
Confidence 4678899999999999999875
No 141
>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase. Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.
Probab=57.10 E-value=4 Score=35.81 Aligned_cols=22 Identities=18% Similarity=0.016 Sum_probs=19.1
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.|..|+++++++.|+|++++.-
T Consensus 55 ~~~~e~~~l~~l~h~~i~~~~~ 76 (292)
T cd06644 55 DYMVEIEILATCNHPYIVKLLG 76 (292)
T ss_pred HHHHHHHHHHhCCCCcEeeeEE
Confidence 5677999999999999999763
No 142
>PTZ00263 protein kinase A catalytic subunit; Provisional
Probab=56.98 E-value=18 Score=32.55 Aligned_cols=22 Identities=14% Similarity=-0.144 Sum_probs=18.9
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++|+++.|+|||++.-
T Consensus 64 ~~~~E~~~l~~l~hp~iv~~~~ 85 (329)
T PTZ00263 64 HVAQEKSILMELSHPFIVNMMC 85 (329)
T ss_pred HHHHHHHHHHhCCCCCCCcEEE
Confidence 3567999999999999999863
No 143
>KOG0611|consensus
Probab=56.96 E-value=4.5 Score=38.54 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=16.5
Q ss_pred hhhhhhccCCCCCcccce
Q psy3210 250 GNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 250 eE~~~mk~l~h~~~v~~~ 267 (272)
.|++||..|+||||+++.
T Consensus 102 REIeIMSsLNHPhII~Iy 119 (668)
T KOG0611|consen 102 REIEIMSSLNHPHIIQIY 119 (668)
T ss_pred HHHHHHhhcCCCceeehh
Confidence 599999999999999875
No 144
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=55.54 E-value=15 Score=35.63 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=33.4
Q ss_pred ccCCCcEEEEeeeeCCcCCeEEEEeC-Ceeeeeeccchhhhhhhcc
Q psy3210 213 PLKQGCQVIVLSKEGEQKGWWKGKID-ERVSYFFQLYWGNFRLLSS 257 (272)
Q Consensus 213 sl~~Gd~i~v~~k~ge~~gwW~G~~~-g~~G~fP~~yVeE~~~mk~ 257 (272)
+|.+|+.|+|++... .||++-+++ |+.||+-..||..-..|..
T Consensus 104 sl~~G~~V~Vl~~~~--ngW~kI~~~~GktGwV~~~YLs~~~~~~~ 147 (481)
T PRK13914 104 SIKGGTKVTVETTES--NGWHKITYNDGKTGFVNGKYLTDKVTSTP 147 (481)
T ss_pred eecCCCEEEEeeccc--CCeEEEEcCCCCEEEEecccccCCCccCc
Confidence 577899999975322 579999996 8999999999986444443
No 145
>KOG3667|consensus
Probab=55.28 E-value=20 Score=36.10 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=37.2
Q ss_pred cEeeeeCCHHHHHHhcccCCCceEEEEeCCCCCCCCCCCceEEEEeeC-CeeeEEEEE
Q psy3210 89 LWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTD-EKVKHMKVY 145 (272)
Q Consensus 89 ~Wf~g~isR~~Ae~lL~~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~-~~v~H~~I~ 145 (272)
....|.++++.+.++|...++|+|++|-|++. .|..++..... ....|+-|.
T Consensus 564 g~Imgfinkq~~~~ll~~~~~GtflLrfs~S~-----~GgiT~~~v~~~~~~~~~~i~ 616 (682)
T KOG3667|consen 564 GVIMGFINKQQERALLMTKPDGTFLLRFSASE-----EGGITIAWVEDQKQNLIMMIM 616 (682)
T ss_pred ceeeeecchhhhhhhhhcCCCCCceeeeeccc-----cCceeEEecccccccceeEec
Confidence 44578999999999999999999999999742 46555544442 222466665
No 146
>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity. Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....
Probab=53.00 E-value=5.1 Score=34.65 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.2
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..|.+|++.|++++|+|||++.
T Consensus 46 ~~~~~e~~~l~~l~h~ni~~~~ 67 (259)
T PF07714_consen 46 EEFLNEIQILRKLRHPNIVKLY 67 (259)
T ss_dssp HHHHHHHHHHHTHSBTTBE-EE
T ss_pred eeeeeccccccccccccccccc
Confidence 4789999999999999999986
No 147
>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor
Probab=52.57 E-value=6.6 Score=33.94 Aligned_cols=23 Identities=17% Similarity=0.014 Sum_probs=20.3
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..|++|+++|+++.|+|||++.-
T Consensus 51 ~~~~~e~~~l~~l~h~~iv~~~~ 73 (266)
T cd05064 51 RGFLAEALTLGQFDHSNIVRLEG 73 (266)
T ss_pred HHHHHHHHHHhcCCCCCcCeEEE
Confidence 35788999999999999999864
No 148
>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k
Probab=50.49 E-value=6.9 Score=34.58 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=19.2
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.|.+|+++|+++.|+|||++.
T Consensus 65 ~~~~E~~~l~~l~h~niv~~~ 85 (304)
T cd05096 65 DFLKEVKILSRLKDPNIIRLL 85 (304)
T ss_pred HHHHHHHHHhhcCCCCeeEEE
Confidence 578899999999999999985
No 149
>PHA03207 serine/threonine kinase US3; Provisional
Probab=49.54 E-value=22 Score=33.00 Aligned_cols=20 Identities=10% Similarity=0.019 Sum_probs=17.9
Q ss_pred chhhhhhhccCCCCCcccce
Q psy3210 248 YWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~~ 267 (272)
...|+++|++++|+|||++.
T Consensus 133 ~~~E~~il~~l~h~~iv~~~ 152 (392)
T PHA03207 133 PGREIDILKTISHRAIINLI 152 (392)
T ss_pred HHHHHHHHHhcCCCCcccee
Confidence 45799999999999999985
No 150
>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p
Probab=49.20 E-value=7.4 Score=34.54 Aligned_cols=22 Identities=18% Similarity=0.012 Sum_probs=19.4
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
....|+++|+++.|+|||++.-
T Consensus 44 ~~~~E~~~l~~l~h~niv~~~~ 65 (317)
T cd07868 44 SACREIALLRELKHPNVISLQK 65 (317)
T ss_pred HHHHHHHHHHhcCCCCCcceee
Confidence 4678999999999999999854
No 151
>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament
Probab=48.65 E-value=7.7 Score=34.05 Aligned_cols=23 Identities=22% Similarity=-0.026 Sum_probs=20.0
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..++.|+++++++.|+|||++.-
T Consensus 48 ~~~~~E~~~l~~l~h~niv~~~~ 70 (288)
T cd07871 48 CTAIREVSLLKNLKHANIVTLHD 70 (288)
T ss_pred hhHHHHHHHHHhCCCCCEeeEEE
Confidence 35778999999999999999863
No 152
>KOG4717|consensus
Probab=48.46 E-value=7 Score=38.44 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=18.8
Q ss_pred ccchhhhhhhccCCCCCcccc
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRL 266 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~ 266 (272)
....+|++-||-..|||||||
T Consensus 62 ~hlfqEVRCMKLVQHpNiVRL 82 (864)
T KOG4717|consen 62 GHLFQEVRCMKLVQHPNIVRL 82 (864)
T ss_pred hHHHHHHHHHHHhcCcCeeee
Confidence 456789999999999999998
No 153
>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex
Probab=48.38 E-value=7.5 Score=33.75 Aligned_cols=23 Identities=22% Similarity=0.004 Sum_probs=20.3
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|++++++++|+|+|++.-
T Consensus 44 ~~~~~E~~~l~~l~h~~i~~~~~ 66 (284)
T cd07860 44 STAIREISLLKELNHPNIVKLLD 66 (284)
T ss_pred hHHHHHHHHHHhcCCCCCcchhh
Confidence 46888999999999999999863
No 154
>PTZ00036 glycogen synthase kinase; Provisional
Probab=48.03 E-value=23 Score=33.62 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=16.8
Q ss_pred hhhhhhhccCCCCCcccce
Q psy3210 249 WGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 249 VeE~~~mk~l~h~~~v~~~ 267 (272)
-+|+.+|+++.|+|||++.
T Consensus 107 ~~Ei~il~~l~h~niv~l~ 125 (440)
T PTZ00036 107 NRELLIMKNLNHINIIFLK 125 (440)
T ss_pred HHHHHHHHhcCCCCCccee
Confidence 3599999999999999973
No 155
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=47.38 E-value=4.9 Score=25.32 Aligned_cols=25 Identities=8% Similarity=0.058 Sum_probs=21.5
Q ss_pred cchheehhcccCCCceecCcCCcch
Q psy3210 9 RSISIVTLKSRGLRPLCSQACYLAC 33 (272)
Q Consensus 9 ~~~~~~~~~g~~~qg~~c~~c~~~~ 33 (272)
..|+..+|+|-..-+..|+.|+...
T Consensus 3 k~m~~~LL~G~~ML~~~Cp~C~~PL 27 (41)
T PF06677_consen 3 KKMGEYLLQGWTMLDEHCPDCGTPL 27 (41)
T ss_pred HHHHHHHHHhHhHhcCccCCCCCee
Confidence 4688899999999999999997654
No 156
>KOG0575|consensus
Probab=47.32 E-value=8.4 Score=38.11 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=17.7
Q ss_pred chhhhhhhccCCCCCcccce
Q psy3210 248 YWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~~ 267 (272)
-..|++|-++|.|||||+|+
T Consensus 65 v~~EIeIHr~L~HpnIV~f~ 84 (592)
T KOG0575|consen 65 VLNEIEIHRSLKHPNIVQFY 84 (592)
T ss_pred HHHHHHHHHhcCCCcEEeee
Confidence 34599999999999999996
No 157
>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants. Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos
Probab=47.29 E-value=7.9 Score=34.62 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=19.3
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+..|+++|++++|+|||++.
T Consensus 44 ~~~~~E~~~l~~l~hpniv~~~ 65 (338)
T cd07859 44 TRILREIKLLRLLRHPDIVEIK 65 (338)
T ss_pred HHHHHHHHHHHhCCCCCEeeec
Confidence 3578899999999999999874
No 158
>KOG0661|consensus
Probab=47.04 E-value=7.9 Score=37.46 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=17.8
Q ss_pred chhhhhhhccCC-CCCcccce
Q psy3210 248 YWGNFRLLSSLF-IVPPVRLS 267 (272)
Q Consensus 248 yVeE~~~mk~l~-h~~~v~~~ 267 (272)
=|+|++.+++|+ |+|||+|.
T Consensus 55 nLREvksL~kln~hpniikL~ 75 (538)
T KOG0661|consen 55 NLREVKSLRKLNPHPNIIKLK 75 (538)
T ss_pred HHHHHHHHHhcCCCCcchhhH
Confidence 367999999999 99999984
No 159
>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an
Probab=46.48 E-value=16 Score=31.33 Aligned_cols=23 Identities=13% Similarity=0.054 Sum_probs=19.8
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..|..|+++++.+.|+|+|++..
T Consensus 46 ~~~~~E~~~l~~l~h~~i~~~~~ 68 (260)
T cd05069 46 EAFLQEAQIMKKLRHDKLVPLYA 68 (260)
T ss_pred HHHHHHHHHHHhCCCCCeeeEEE
Confidence 45778999999999999998854
No 160
>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins. Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic
Probab=45.97 E-value=22 Score=31.05 Aligned_cols=22 Identities=18% Similarity=0.051 Sum_probs=18.9
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+..|+++++++.|+|||++.
T Consensus 52 ~~~~~e~~~l~~l~h~~i~~~~ 73 (311)
T cd07866 52 ITALREIKILKKLKHPNVVPLI 73 (311)
T ss_pred hhHHHHHHHHHhcCCCCccchh
Confidence 3456799999999999999975
No 161
>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells
Probab=45.95 E-value=8.7 Score=33.12 Aligned_cols=23 Identities=9% Similarity=-0.128 Sum_probs=20.4
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..|.+|+++++.+.|+|+|++.-
T Consensus 40 ~~~~~E~~~l~~l~h~~iv~~~~ 62 (269)
T cd05087 40 MKFLEEAQPYRSLQHSNLLQCLG 62 (269)
T ss_pred HHHHHHHHHHHhCCCCCEeeEEE
Confidence 46889999999999999999864
No 162
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=45.81 E-value=9 Score=25.65 Aligned_cols=26 Identities=19% Similarity=0.437 Sum_probs=21.7
Q ss_pred CCceecCcCCcchhcccccCCCCCCC
Q psy3210 21 LRPLCSQACYLACHKQCIPHTGRCGT 46 (272)
Q Consensus 21 ~qg~~c~~c~~~~h~~c~~~~~~C~~ 46 (272)
.+...|+.||+.-|..|-...+.|..
T Consensus 19 dDiVvCp~CgapyHR~C~~~~g~C~~ 44 (54)
T PF14446_consen 19 DDIVVCPECGAPYHRDCWEKAGGCIN 44 (54)
T ss_pred CCEEECCCCCCcccHHHHhhCCceEe
Confidence 46688999999999999887777754
No 163
>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down
Probab=45.64 E-value=9.3 Score=33.95 Aligned_cols=23 Identities=9% Similarity=-0.119 Sum_probs=20.2
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++|+++.|+|||+++-
T Consensus 44 ~~~~~E~~~l~~l~h~~iv~~~~ 66 (308)
T cd06615 44 NQIIRELKVLHECNSPYIVGFYG 66 (308)
T ss_pred HHHHHHHHHHHhCCCCCCCeEEE
Confidence 45778999999999999999873
No 164
>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina
Probab=44.98 E-value=9.7 Score=32.76 Aligned_cols=22 Identities=9% Similarity=0.001 Sum_probs=19.9
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..|++|+++++.+.|+|||++.
T Consensus 40 ~~~~~e~~~~~~l~h~nii~~~ 61 (269)
T cd05042 40 LLFLQEVQPYRELNHPNVLQCL 61 (269)
T ss_pred HHHHHHHHHHHhCCCCCcceEE
Confidence 4688999999999999999986
No 165
>KOG1035|consensus
Probab=44.95 E-value=7.9 Score=41.51 Aligned_cols=21 Identities=24% Similarity=0.118 Sum_probs=18.5
Q ss_pred chhhhhhhccCCCCCccccee
Q psy3210 248 YWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~~~ 268 (272)
-..|++.+.+|+|||+||...
T Consensus 524 I~rEVk~LArLnHpNVVRYys 544 (1351)
T KOG1035|consen 524 ILREVKLLARLNHPNVVRYYS 544 (1351)
T ss_pred HHHHHHHHhhcCCcceeeeeh
Confidence 567999999999999999853
No 166
>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1. Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst
Probab=44.72 E-value=8.8 Score=34.71 Aligned_cols=23 Identities=9% Similarity=-0.136 Sum_probs=20.4
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++|+++.|+|||++..
T Consensus 48 ~~~~~E~~~l~~l~h~~iv~~~~ 70 (333)
T cd06650 48 NQIIRELQVLHECNSPYIVGFYG 70 (333)
T ss_pred HHHHHHHHHHHHCCCCcccceeE
Confidence 45788999999999999999874
No 167
>PF13696 zf-CCHC_2: Zinc knuckle
Probab=44.57 E-value=9.6 Score=22.67 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=12.1
Q ss_pred CCceecCcCCcchh
Q psy3210 21 LRPLCSQACYLACH 34 (272)
Q Consensus 21 ~qg~~c~~c~~~~h 34 (272)
..+|.|..|+..-|
T Consensus 6 P~~Y~C~~C~~~GH 19 (32)
T PF13696_consen 6 PPGYVCHRCGQKGH 19 (32)
T ss_pred CCCCEeecCCCCCc
Confidence 56899999988877
No 168
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=44.49 E-value=27 Score=24.16 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=15.1
Q ss_pred cCCCcEEEEeeeeCCc-CCeEEEEeC
Q psy3210 214 LKQGCQVIVLSKEGEQ-KGWWKGKID 238 (272)
Q Consensus 214 l~~Gd~i~v~~k~ge~-~gwW~G~~~ 238 (272)
|++|+.|+|..+.+.- ..||.+.+.
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~ 26 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVL 26 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEE
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEE
Confidence 6789999999755432 558888875
No 169
>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an
Probab=44.16 E-value=10 Score=33.46 Aligned_cols=21 Identities=24% Similarity=0.014 Sum_probs=18.8
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+.+|+++|+.+.|+|+|++.
T Consensus 49 ~~~~E~~~l~~l~h~niv~~~ 69 (303)
T cd07869 49 TAIREASLLKGLKHANIVLLH 69 (303)
T ss_pred hHHHHHHHHhhCCCCCcCeEE
Confidence 467899999999999999986
No 170
>KOG0659|consensus
Probab=44.06 E-value=8.8 Score=34.58 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=20.0
Q ss_pred eccchhhhhhhccCCCCCcccc
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRL 266 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~ 266 (272)
..+-++|++.++.+.|+|||+|
T Consensus 45 ~~talREIK~Lqel~h~nIi~L 66 (318)
T KOG0659|consen 45 NRTALREIKLLQELKHPNIIEL 66 (318)
T ss_pred cHHHHHHHHHHHHccCcchhhh
Confidence 5567899999999999999987
No 171
>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl. Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor
Probab=43.47 E-value=9.8 Score=32.70 Aligned_cols=22 Identities=9% Similarity=0.003 Sum_probs=19.6
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+..|+++|+.++|+|||++.
T Consensus 45 ~~~~~E~~~l~~l~h~~iv~~~ 66 (272)
T cd05075 45 EDFLSEAVCMKEFDHPNVMRLI 66 (272)
T ss_pred HHHHHHHHHHHhCCCCCcceEE
Confidence 5678899999999999999975
No 172
>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2. Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst
Probab=43.44 E-value=11 Score=33.98 Aligned_cols=22 Identities=9% Similarity=-0.082 Sum_probs=19.9
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..++.|+++|+++.|+|||++.
T Consensus 48 ~~~~~E~~~l~~l~h~~iv~~~ 69 (331)
T cd06649 48 NQIIRELQVLHECNSPYIVGFY 69 (331)
T ss_pred HHHHHHHHHHHHCCCCCCCeEE
Confidence 4688999999999999999986
No 173
>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom
Probab=43.30 E-value=11 Score=32.54 Aligned_cols=24 Identities=8% Similarity=-0.020 Sum_probs=20.7
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..|.+|+.+++.+.|||||++...
T Consensus 49 ~~~~~~~~~l~~l~hp~iv~~~~~ 72 (262)
T cd05077 49 LAFFETASMMRQVSHKHIVLLYGV 72 (262)
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEE
Confidence 358889999999999999998753
No 174
>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage
Probab=43.18 E-value=11 Score=32.54 Aligned_cols=23 Identities=4% Similarity=-0.240 Sum_probs=20.5
Q ss_pred eccchhhhhhhccCCCCCcccce
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
...|.+|+.+++.++|+|||++.
T Consensus 39 ~~~~~~e~~~~~~l~h~~iv~~~ 61 (268)
T cd05086 39 QNEFLQQGDPYRILQHPNILQCL 61 (268)
T ss_pred HHHHHHHHHHHhccCCcchhheE
Confidence 35789999999999999999976
No 175
>KOG0582|consensus
Probab=43.06 E-value=12 Score=36.08 Aligned_cols=23 Identities=13% Similarity=-0.067 Sum_probs=19.3
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
+-.+|++.|+.++|||||..+-|
T Consensus 70 ~l~kE~~~msl~~HPNIv~~~~s 92 (516)
T KOG0582|consen 70 ALRKEVQTMSLIDHPNIVTYHCS 92 (516)
T ss_pred HHHHHHHHhhhcCCCCcceEEEE
Confidence 34579999999999999998754
No 176
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=42.90 E-value=20 Score=21.39 Aligned_cols=23 Identities=13% Similarity=0.211 Sum_probs=16.4
Q ss_pred eecCcCCcchhccc-ccCCCCCCC
Q psy3210 24 LCSQACYLACHKQC-IPHTGRCGT 46 (272)
Q Consensus 24 ~~c~~c~~~~h~~c-~~~~~~C~~ 46 (272)
|+|..||.-.--+. ....+.|+.
T Consensus 3 ~~C~~CG~i~~g~~~p~~CP~Cg~ 26 (34)
T cd00729 3 WVCPVCGYIHEGEEAPEKCPICGA 26 (34)
T ss_pred EECCCCCCEeECCcCCCcCcCCCC
Confidence 78999997654443 567777776
No 177
>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular
Probab=42.79 E-value=11 Score=32.05 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=20.4
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..|..|+++++++.|+|+|++..
T Consensus 38 ~~~~~e~~~l~~l~h~~i~~~~~ 60 (252)
T cd05084 38 AKFLQEARILKQYSHPNIVRLIG 60 (252)
T ss_pred HHHHHHHHHHHhCCCCCcceEEE
Confidence 46889999999999999999874
No 178
>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor
Probab=42.55 E-value=11 Score=33.47 Aligned_cols=22 Identities=14% Similarity=-0.020 Sum_probs=19.4
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+.+|+.+|+.+.|+|||++.
T Consensus 54 ~~~~~e~~~l~~l~h~niv~~~ 75 (316)
T cd05108 54 KEILDEAYVMASVDNPHVCRLL 75 (316)
T ss_pred HHHHHHHHHHHhCCCCCCCeEE
Confidence 4577899999999999999986
No 179
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=42.52 E-value=37 Score=24.80 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=24.3
Q ss_pred hcccCCCceEEEEeCCCCCCCCCCCceEEEEeeCC
Q psy3210 103 LLEREADGTYLLRIRPQGPTHPNETIYALSLKTDE 137 (272)
Q Consensus 103 lL~~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~ 137 (272)
.+.++.+|+|.|.-.... .|.|.|+++.++
T Consensus 49 ~v~d~~dGty~v~y~P~~-----~G~~~i~V~~~g 78 (93)
T smart00557 49 EVKDNGDGTYTVSYTPTE-----PGDYTVTVKFGG 78 (93)
T ss_pred EEEeCCCCEEEEEEEeCC-----CEeEEEEEEECC
Confidence 345678899999988754 599999999876
No 180
>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome. Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds
Probab=42.32 E-value=11 Score=32.21 Aligned_cols=25 Identities=12% Similarity=-0.031 Sum_probs=21.4
Q ss_pred eccchhhhhhhccCCCCCcccceec
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
...|..|+++++++.|+|||++...
T Consensus 43 ~~~~~~e~~~l~~l~h~~i~~~~~~ 67 (256)
T cd05113 43 EDEFIEEAKVMMKLSHEKLVQLYGV 67 (256)
T ss_pred HHHHHHHHHHHhcCCCCCeeeEEEE
Confidence 3468899999999999999998753
No 181
>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate
Probab=42.31 E-value=12 Score=33.31 Aligned_cols=22 Identities=14% Similarity=-0.047 Sum_probs=19.0
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++|+++.|+|||++..
T Consensus 44 ~~~~E~~~l~~l~h~niv~~~~ 65 (318)
T cd05582 44 RTKMERDILAEVNHPFIVKLHY 65 (318)
T ss_pred HHHHHHHHHHhCCCCCcccEEE
Confidence 3567899999999999999865
No 182
>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s
Probab=41.98 E-value=11 Score=32.46 Aligned_cols=24 Identities=17% Similarity=0.081 Sum_probs=20.7
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..|..|++++++++|+|||++...
T Consensus 53 ~~~~~E~~~l~~l~h~~iv~~~~~ 76 (275)
T cd05046 53 SEFRRELDMFRKLSHKNVVRLLGL 76 (275)
T ss_pred HHHHHHHHHHHhcCCcceeeeEEE
Confidence 357789999999999999998754
No 183
>KOG4239|consensus
Probab=41.53 E-value=5.1 Score=36.43 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=27.2
Q ss_pred hcccCCCceecCcCCcchhccc-ccCCCCCCC
Q psy3210 16 LKSRGLRPLCSQACYLACHKQC-IPHTGRCGT 46 (272)
Q Consensus 16 ~~g~~~qg~~c~~c~~~~h~~c-~~~~~~C~~ 46 (272)
..|+..+|..|..|+..+|-.| +-+.-.|.+
T Consensus 72 ~~~vl~egL~c~~c~~tch~rcr~lv~ldc~~ 103 (348)
T KOG4239|consen 72 IWGVLREGLLCIHCKFTCHIRCRMLVDLDCRS 103 (348)
T ss_pred HHHHHHHHHhhhhcCCccCHHHHhhhhhhhcC
Confidence 4577889999999999999999 888888877
No 184
>TIGR00354 polC DNA polymerase, archaeal type II, large subunit. This model represents the large subunit, DP2, of a two subunit novel Archaeal replicative DNA polymerase first characterized for Pyrococcus furiosus. Structure of DP2 appears to be organized as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit.
Probab=41.26 E-value=16 Score=38.35 Aligned_cols=31 Identities=13% Similarity=0.300 Sum_probs=24.7
Q ss_pred hcccCCCceecCcCCcchhccc-ccCCCCCCC
Q psy3210 16 LKSRGLRPLCSQACYLACHKQC-IPHTGRCGT 46 (272)
Q Consensus 16 ~~g~~~qg~~c~~c~~~~h~~c-~~~~~~C~~ 46 (272)
||..+.|..+|.+||+.-..-- .+.++.||+
T Consensus 1005 LRaFsrQ~fRC~kC~~kYRR~PL~G~C~kCGg 1036 (1095)
T TIGR00354 1005 LRAFSRQEVRCTKCNTKYRRIPLVGKCLKCGN 1036 (1095)
T ss_pred HhhhhccceeecccCCccccCCCCCcccccCC
Confidence 4556789999999999988776 566777876
No 185
>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign
Probab=41.23 E-value=11 Score=32.82 Aligned_cols=22 Identities=14% Similarity=0.208 Sum_probs=19.5
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+.+|+++++++.|+|||++.
T Consensus 51 ~~~~~E~~~l~~l~h~~i~~~~ 72 (283)
T cd05080 51 SGWKKEINILKTLYHENIVKYK 72 (283)
T ss_pred HHHHHHHHHHHhCCCCCEeeEE
Confidence 4577899999999999999976
No 186
>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros. Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male
Probab=41.13 E-value=12 Score=32.01 Aligned_cols=21 Identities=19% Similarity=0.145 Sum_probs=19.2
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+++|+.+.|+|||++.
T Consensus 45 ~~~~e~~~l~~l~h~~i~~~~ 65 (269)
T cd05044 45 EFLKEAHLMSNFNHPNIVKLL 65 (269)
T ss_pred HHHHHHHHHHhcCCCCeeeEe
Confidence 578899999999999999975
No 187
>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as
Probab=41.03 E-value=12 Score=33.17 Aligned_cols=22 Identities=18% Similarity=0.006 Sum_probs=19.2
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+.+|+++|+++.|+|||++.-
T Consensus 44 ~~~~E~~~l~~l~h~niv~~~~ 65 (317)
T cd07867 44 SACREIALLRELKHPNVIALQK 65 (317)
T ss_pred HHHHHHHHHHhCCCCCeeeEEE
Confidence 4678999999999999999853
No 188
>PRK04023 DNA polymerase II large subunit; Validated
Probab=40.93 E-value=16 Score=38.50 Aligned_cols=31 Identities=13% Similarity=0.254 Sum_probs=24.6
Q ss_pred hcccCCCceecCcCCcchhccc-ccCCCCCCC
Q psy3210 16 LKSRGLRPLCSQACYLACHKQC-IPHTGRCGT 46 (272)
Q Consensus 16 ~~g~~~qg~~c~~c~~~~h~~c-~~~~~~C~~ 46 (272)
||..+.|..+|.+||+.-..-- .+.++.|++
T Consensus 1030 LRaFsrQ~fRC~kC~~kYRR~PL~G~C~kCGg 1061 (1121)
T PRK04023 1030 LRAFSRQEFRCTKCGAKYRRPPLSGKCPKCGG 1061 (1121)
T ss_pred hhhhcccceeecccCcccccCCCCCcCccCCC
Confidence 4556789999999999988776 566777866
No 189
>KOG1989|consensus
Probab=40.90 E-value=10 Score=38.67 Aligned_cols=20 Identities=10% Similarity=-0.084 Sum_probs=17.3
Q ss_pred chhhhhhhccCC-CCCcccce
Q psy3210 248 YWGNFRLLSSLF-IVPPVRLS 267 (272)
Q Consensus 248 yVeE~~~mk~l~-h~~~v~~~ 267 (272)
...|+.+||+|. |+|||.+-
T Consensus 81 v~~EI~~MK~L~gh~nIV~yi 101 (738)
T KOG1989|consen 81 VKREIDIMKLLSGHKNIVSYI 101 (738)
T ss_pred HHHHHHHHHHhcCCCceeeEe
Confidence 346999999999 99999873
No 190
>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa. Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho
Probab=40.89 E-value=11 Score=32.49 Aligned_cols=22 Identities=14% Similarity=-0.016 Sum_probs=19.7
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..|.+|+++|+++.|+|||++.
T Consensus 40 ~~~~~E~~~l~~l~h~~ii~~~ 61 (257)
T cd05115 40 DEMMREAEIMHQLDNPYIVRMI 61 (257)
T ss_pred HHHHHHHHHHHhcCCCCeEEEE
Confidence 4688999999999999999975
No 191
>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in
Probab=40.61 E-value=14 Score=33.26 Aligned_cols=23 Identities=13% Similarity=-0.051 Sum_probs=19.9
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
.++.|+++|+++.|||+|++...
T Consensus 41 ~~~~E~~~l~~l~hp~i~~~~~~ 63 (323)
T cd05595 41 HTVTESRVLQNTRHPFLTALKYA 63 (323)
T ss_pred HHHHHHHHHHhCCCCCCcceeeE
Confidence 56789999999999999998643
No 192
>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase. Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays
Probab=40.61 E-value=22 Score=30.44 Aligned_cols=23 Identities=9% Similarity=0.005 Sum_probs=20.0
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++++.+.|+|+|++.-
T Consensus 47 ~~~~~e~~~l~~l~h~~i~~~~~ 69 (263)
T cd05052 47 EEFLKEAAVMKEIKHPNLVQLLG 69 (263)
T ss_pred HHHHHHHHHHHhCCCCChhheEE
Confidence 35788999999999999999864
No 193
>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the
Probab=40.28 E-value=13 Score=32.42 Aligned_cols=23 Identities=22% Similarity=-0.070 Sum_probs=19.9
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..++.|+++|+++.|+||++++-
T Consensus 48 ~~~~~E~~~l~~l~h~~i~~~~~ 70 (291)
T cd07844 48 FTAIREASLLKDLKHANIVTLHD 70 (291)
T ss_pred hhHHHHHHHHhhCCCcceeeEEE
Confidence 34678999999999999999874
No 194
>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh
Probab=40.08 E-value=12 Score=32.30 Aligned_cols=22 Identities=14% Similarity=0.066 Sum_probs=19.3
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.|..|+.+++.+.|+|+|++.-
T Consensus 55 ~~~~e~~~l~~l~~~~iv~~~~ 76 (277)
T cd05062 55 EFLNEASVMKEFNCHHVVRLLG 76 (277)
T ss_pred HHHHHHHHHHhCCCCCeeeEEE
Confidence 4778999999999999999863
No 195
>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki
Probab=39.93 E-value=12 Score=31.67 Aligned_cols=25 Identities=20% Similarity=0.090 Sum_probs=21.5
Q ss_pred eccchhhhhhhccCCCCCcccceec
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
...|.+|+++|+++.|+|+|++.-.
T Consensus 45 ~~~~~~e~~~l~~l~h~~i~~~~~~ 69 (259)
T cd05037 45 SLAFFETASLMSQLSHKHLVKLYGV 69 (259)
T ss_pred HHHHHHHHHHHHcCCCcchhheeeE
Confidence 4578899999999999999998753
No 196
>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein. Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi
Probab=39.66 E-value=13 Score=32.40 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=20.3
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..+..|+++++.+.|+|||++...
T Consensus 48 ~~~~~E~~~l~~l~h~~iv~~~~~ 71 (290)
T cd05045 48 RDLLSEFNLLKQVNHPHVIKLYGA 71 (290)
T ss_pred HHHHHHHHHHhhCCCCCEeeEEEE
Confidence 357789999999999999998653
No 197
>PLN00009 cyclin-dependent kinase A; Provisional
Probab=39.42 E-value=12 Score=32.70 Aligned_cols=24 Identities=21% Similarity=-0.019 Sum_probs=20.7
Q ss_pred eccchhhhhhhccCCCCCccccee
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
+..+..|+++++++.|+|++++.-
T Consensus 45 ~~~~~~e~~~l~~l~h~~i~~~~~ 68 (294)
T PLN00009 45 PSTAIREISLLKEMQHGNIVRLQD 68 (294)
T ss_pred hHHHHHHHHHHHhccCCCEeeEEE
Confidence 356788999999999999999863
No 198
>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul
Probab=39.31 E-value=14 Score=31.85 Aligned_cols=21 Identities=5% Similarity=0.055 Sum_probs=18.8
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.|..|+++++.+.|+|||++.
T Consensus 51 ~~~~e~~~l~~l~h~~i~~~~ 71 (267)
T cd05066 51 DFLSEASIMGQFDHPNIIHLE 71 (267)
T ss_pred HHHHHHHHHHhCCCCCcceEE
Confidence 567799999999999999985
No 199
>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase. Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki
Probab=39.12 E-value=22 Score=30.15 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=19.9
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..|..|+.+++.+.|+|++++.-
T Consensus 44 ~~~~~e~~~l~~~~~~~i~~~~~ 66 (254)
T cd05083 44 QAFLEETAVMTKLHHKNLVRLLG 66 (254)
T ss_pred HHHHHHHHHHHhCCCCCcCeEEE
Confidence 45788999999999999999763
No 200
>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V
Probab=38.87 E-value=12 Score=33.66 Aligned_cols=22 Identities=14% Similarity=0.105 Sum_probs=19.4
Q ss_pred cchhhhhhhccC-CCCCccccee
Q psy3210 247 LYWGNFRLLSSL-FIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l-~h~~~v~~~~ 268 (272)
.++.|+++|+++ .|+|||++.-
T Consensus 56 ~~~~E~~~l~~l~~h~niv~~~~ 78 (338)
T cd05102 56 ALMSELKILIHIGNHLNVVNLLG 78 (338)
T ss_pred HHHHHHHHHHHhccCcceeeEEe
Confidence 578899999999 8999999863
No 201
>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also
Probab=38.66 E-value=13 Score=32.12 Aligned_cols=24 Identities=25% Similarity=0.030 Sum_probs=20.3
Q ss_pred eeccchhhhhhhccCCCCCcccce
Q psy3210 244 FFQLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 244 fP~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..+..|+++|+++.|+|++++.
T Consensus 42 ~~~~~~~ei~~l~~l~h~~i~~~~ 65 (284)
T cd07839 42 VPSSALREICLLKELKHKNIVRLY 65 (284)
T ss_pred CccchhHHHHHHHhcCCCCeeeHH
Confidence 345677899999999999999875
No 202
>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti
Probab=38.58 E-value=12 Score=32.29 Aligned_cols=22 Identities=18% Similarity=0.025 Sum_probs=19.6
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..|..|+++++++.|+|+|++.
T Consensus 47 ~~~~~e~~~l~~l~h~~i~~~~ 68 (280)
T cd06611 47 EDFMVEIDILSECKHPNIVGLY 68 (280)
T ss_pred HHHHHHHHHHHhCCCCceeEEE
Confidence 3578899999999999999986
No 203
>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac
Probab=38.33 E-value=14 Score=31.75 Aligned_cols=23 Identities=4% Similarity=-0.045 Sum_probs=20.1
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++|+++.|+|+|++.-
T Consensus 46 ~~~~~E~~~l~~l~h~~i~~~~~ 68 (273)
T cd05074 46 EEFLREAACMKEFDHPNVIKLIG 68 (273)
T ss_pred HHHHHHHHHHhcCCCCCcceEEE
Confidence 45788999999999999999864
No 204
>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-
Probab=38.11 E-value=13 Score=35.06 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=19.3
Q ss_pred ccchhhhhhhccCC-CCCcccce
Q psy3210 246 QLYWGNFRLLSSLF-IVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~-h~~~v~~~ 267 (272)
..++.|+++|+++. |||||++.
T Consensus 85 ~~~~~Ei~~l~~l~~HpnIv~l~ 107 (400)
T cd05105 85 QALMSELKIMTHLGPHLNIVNLL 107 (400)
T ss_pred HHHHHHHHHHHhcCCCCCeeeEE
Confidence 35778999999996 99999986
No 205
>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl
Probab=38.03 E-value=14 Score=32.94 Aligned_cols=23 Identities=13% Similarity=0.005 Sum_probs=20.1
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..++.|+++|+++.|+|||++..
T Consensus 38 ~~~~~E~~~l~~l~h~~iv~~~~ 60 (312)
T cd05585 38 THTLAERTVLAQVNCPFIVPLKF 60 (312)
T ss_pred HHHHHHHHHHHhCCCCcEeceee
Confidence 35778999999999999999864
No 206
>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron. Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca
Probab=37.67 E-value=16 Score=31.14 Aligned_cols=22 Identities=5% Similarity=-0.014 Sum_probs=19.4
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+..|+.+|+++.|+|+|++.
T Consensus 41 ~~~~~e~~~l~~l~h~~iv~~~ 62 (262)
T cd05058 41 EQFLKEGIIMKDFSHPNVLSLL 62 (262)
T ss_pred HHHHHHHHHHccCCCCCcceEE
Confidence 4678899999999999999975
No 207
>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase. Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in
Probab=37.60 E-value=14 Score=33.05 Aligned_cols=22 Identities=14% Similarity=-0.046 Sum_probs=19.2
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++|+.+.|+|||++..
T Consensus 46 ~~~~E~~il~~l~hp~iv~~~~ 67 (323)
T cd05584 46 HTKAERNILEAVKHPFIVDLIY 67 (323)
T ss_pred HHHHHHHHHHhCCCCchhceee
Confidence 4678999999999999999863
No 208
>KOG0578|consensus
Probab=37.42 E-value=10 Score=37.12 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=17.8
Q ss_pred chhhhhhhccCCCCCcccce
Q psy3210 248 YWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~~ 267 (272)
-+.|+.+|+.++|+|||++.
T Consensus 317 ilnEi~Vm~~~~H~NiVnfl 336 (550)
T KOG0578|consen 317 LLNEILVMRDLHHPNIVNFL 336 (550)
T ss_pred hHHHHHHHHhccchHHHHHH
Confidence 46799999999999999874
No 209
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=37.23 E-value=32 Score=36.65 Aligned_cols=21 Identities=14% Similarity=-0.048 Sum_probs=18.9
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.++.|+++|++|.|+|||++.
T Consensus 58 ~~~~EI~IL~~L~HPNIVrl~ 78 (1021)
T PTZ00266 58 QLVIEVNVMRELKHKNIVRYI 78 (1021)
T ss_pred HHHHHHHHHHHcCCCCcCeEE
Confidence 477899999999999999985
No 210
>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2. Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit
Probab=37.16 E-value=15 Score=32.27 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.2
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..|..|+++|+++.|+|+|++..
T Consensus 64 ~~~~~E~~~l~~l~~~~i~~~~~ 86 (296)
T cd05095 64 NDFLKEIKIMSRLKDPNIIRLLA 86 (296)
T ss_pred HHHHHHHHHHHhCCCCCcceEEE
Confidence 35788999999999999999864
No 211
>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase. Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and
Probab=36.92 E-value=15 Score=31.22 Aligned_cols=22 Identities=18% Similarity=0.122 Sum_probs=19.5
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..|..|+++++++.|+|||++.
T Consensus 41 ~~~~~e~~~l~~l~h~~iv~~~ 62 (257)
T cd05040 41 DDFLKEAAIMHSLDHENLIRLY 62 (257)
T ss_pred HHHHHHHHHHhhcCCCCcccee
Confidence 4677899999999999999975
No 212
>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely
Probab=36.64 E-value=14 Score=32.24 Aligned_cols=23 Identities=17% Similarity=0.008 Sum_probs=19.6
Q ss_pred eccchhhhhhhccCCCCCcccce
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
+..+..|+++++.++|+|+|+++
T Consensus 50 ~~~~~~e~~~~~~l~h~~i~~~~ 72 (302)
T cd07864 50 PITAIREIKILRQLNHRNIVNLK 72 (302)
T ss_pred hHHHHHHHHHHHhCCCCCeeeee
Confidence 34567899999999999999975
No 213
>PLN00034 mitogen-activated protein kinase kinase; Provisional
Probab=36.59 E-value=15 Score=33.40 Aligned_cols=22 Identities=9% Similarity=0.048 Sum_probs=19.4
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+.+|+++|+++.|+|||++.
T Consensus 117 ~~~~~E~~~l~~l~h~~iv~~~ 138 (353)
T PLN00034 117 RQICREIEILRDVNHPNVVKCH 138 (353)
T ss_pred HHHHHHHHHHHhCCCCCcceee
Confidence 3577899999999999999975
No 214
>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt
Probab=36.59 E-value=13 Score=32.77 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.7
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
.+..|+++|+++.|+|||++.+.
T Consensus 47 ~~~~E~~~l~~l~hp~iv~~~~~ 69 (291)
T cd05612 47 HVHNEKRVLKEVSHPFIIRLFWT 69 (291)
T ss_pred HHHHHHHHHHhCCCCcHhhhHhh
Confidence 46679999999999999998653
No 215
>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity
Probab=36.44 E-value=15 Score=31.44 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=19.5
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..|.+|+.+|+.+.|+|+|++.
T Consensus 44 ~~~~~e~~~l~~~~h~~iv~~~ 65 (258)
T cd05078 44 ESFFEAASMMSQLSHKHLVLNY 65 (258)
T ss_pred HHHHHHHHHHHhCCCCChhhee
Confidence 3578899999999999999986
No 216
>KOG1829|consensus
Probab=36.38 E-value=14 Score=36.76 Aligned_cols=21 Identities=10% Similarity=0.021 Sum_probs=18.6
Q ss_pred hhcccCCCceecCcCCcchhc
Q psy3210 15 TLKSRGLRPLCSQACYLACHK 35 (272)
Q Consensus 15 ~~~g~~~qg~~c~~c~~~~h~ 35 (272)
.=+||-.|||+|..||..++.
T Consensus 332 re~gL~aQ~~~CAgC~~~i~~ 352 (580)
T KOG1829|consen 332 REKGLDAQNFRCAGCGHTIGP 352 (580)
T ss_pred hhhhhhccCceecccCCCccc
Confidence 347999999999999999994
No 217
>KOG0198|consensus
Probab=36.02 E-value=15 Score=33.61 Aligned_cols=21 Identities=24% Similarity=0.042 Sum_probs=18.6
Q ss_pred chhhhhhhccCCCCCccccee
Q psy3210 248 YWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.-+|+++|++|.||||||..=
T Consensus 61 l~~Ei~iL~~l~~p~IV~~~G 81 (313)
T KOG0198|consen 61 LEREIRILSRLNHPNIVQYYG 81 (313)
T ss_pred HHHHHHHHHhCCCCCEEeeCC
Confidence 567999999999999999764
No 218
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=35.82 E-value=24 Score=22.36 Aligned_cols=24 Identities=13% Similarity=0.059 Sum_probs=16.4
Q ss_pred ceecCcCCcchhccc---ccCCCCCCC
Q psy3210 23 PLCSQACYLACHKQC---IPHTGRCGT 46 (272)
Q Consensus 23 g~~c~~c~~~~h~~c---~~~~~~C~~ 46 (272)
-|.|..||..+.-.= ....+.|+.
T Consensus 3 ~y~C~~CG~~~~~~~~~~~~~Cp~CG~ 29 (46)
T PRK00398 3 EYKCARCGREVELDEYGTGVRCPYCGY 29 (46)
T ss_pred EEECCCCCCEEEECCCCCceECCCCCC
Confidence 389999998874433 345677765
No 219
>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re
Probab=35.80 E-value=35 Score=28.94 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=19.2
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.|..|+.+++++.|+|+|++.-
T Consensus 45 ~~~~e~~~l~~l~~~~i~~~~~ 66 (256)
T cd05082 45 AFLAEASVMTQLRHSNLVQLLG 66 (256)
T ss_pred HHHHHHHHHHhCCCCCeeeEEE
Confidence 4678999999999999999763
No 220
>KOG0594|consensus
Probab=35.68 E-value=15 Score=33.75 Aligned_cols=24 Identities=25% Similarity=0.104 Sum_probs=22.6
Q ss_pred eeccchhhhhhhccCCCCC-cccce
Q psy3210 244 FFQLYWGNFRLLSSLFIVP-PVRLS 267 (272)
Q Consensus 244 fP~~yVeE~~~mk~l~h~~-~v~~~ 267 (272)
.|.+=+.|+-+|++|+|.| +|+|+
T Consensus 53 ~P~taiREisllk~L~~~~~iv~L~ 77 (323)
T KOG0594|consen 53 VPSTAIREISLLKRLSHANHIVRLH 77 (323)
T ss_pred CCchhhHHHHHHHHhCCCcceEEEE
Confidence 7888999999999999999 99986
No 221
>PHA03210 serine/threonine kinase US3; Provisional
Probab=35.54 E-value=17 Score=35.31 Aligned_cols=21 Identities=10% Similarity=-0.029 Sum_probs=18.3
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+++|+++.|+|||++.
T Consensus 209 ~~~~Ei~il~~l~HpnIv~l~ 229 (501)
T PHA03210 209 QLENEILALGRLNHENILKIE 229 (501)
T ss_pred HHHHHHHHHHhCCCCCcCcEe
Confidence 356799999999999999985
No 222
>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be
Probab=35.31 E-value=19 Score=32.31 Aligned_cols=23 Identities=17% Similarity=-0.008 Sum_probs=19.9
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
.++.|+++|+++.|+|||++...
T Consensus 41 ~~~~e~~~l~~l~hp~i~~~~~~ 63 (323)
T cd05571 41 HTLTESRVLQNTRHPFLTALKYS 63 (323)
T ss_pred HHHHHHHHHHhCCCCCCCCEEEE
Confidence 46789999999999999998653
No 223
>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate
Probab=35.24 E-value=19 Score=32.43 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=20.3
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..++.|+++|+++.|+|||++...
T Consensus 40 ~~~~~E~~~l~~l~hp~iv~~~~~ 63 (328)
T cd05593 40 AHTLTESRVLKNTRHPFLTSLKYS 63 (328)
T ss_pred HHHHHHHHHHHhCCCCCCcceEEE
Confidence 356789999999999999998643
No 224
>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke
Probab=35.23 E-value=15 Score=32.02 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=19.8
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..|..|+++|+++.|+|+|++.-
T Consensus 64 ~~~~~e~~~l~~l~~~~i~~~~~ 86 (296)
T cd05051 64 EDFLKEVKILSRLSDPNIARLLG 86 (296)
T ss_pred HHHHHHHHHHHhcCCCCEeEEEE
Confidence 35678999999999999999864
No 225
>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=35.17 E-value=17 Score=31.79 Aligned_cols=22 Identities=9% Similarity=-0.103 Sum_probs=19.4
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+..|+++|+++.|+|||++.
T Consensus 44 ~~~~~e~~~l~~l~h~~iv~~~ 65 (287)
T cd06621 44 KQILRELEINKSCKSPYIVKYY 65 (287)
T ss_pred HHHHHHHHHHHhCCCCCeeeee
Confidence 4578899999999999999974
No 226
>KOG0032|consensus
Probab=35.12 E-value=16 Score=34.41 Aligned_cols=21 Identities=19% Similarity=0.044 Sum_probs=18.3
Q ss_pred cchhhhhhhccCC-CCCcccce
Q psy3210 247 LYWGNFRLLSSLF-IVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~-h~~~v~~~ 267 (272)
..-.|+++|+++. |||+|+|.
T Consensus 81 ~v~~Ev~il~~l~~hpniv~l~ 102 (382)
T KOG0032|consen 81 DVRREVAILQQLSGHPNIVQLK 102 (382)
T ss_pred HHHHHHHHHHhccCCCCEEEEE
Confidence 3456999999999 99999986
No 227
>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.
Probab=34.94 E-value=15 Score=31.44 Aligned_cols=24 Identities=17% Similarity=-0.011 Sum_probs=20.9
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..+..|+++++.+.|+|+|++...
T Consensus 47 ~~~~~e~~~l~~~~h~~i~~~~~~ 70 (267)
T cd08229 47 ADCIKEIDLLKQLNHPNVIKYYAS 70 (267)
T ss_pred HHHHHHHHHHHHccCCchhhhhhe
Confidence 468889999999999999998754
No 228
>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr
Probab=34.84 E-value=17 Score=31.14 Aligned_cols=23 Identities=4% Similarity=0.014 Sum_probs=19.9
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..|..|+.+++++.|+|++++.-
T Consensus 50 ~~~~~e~~~l~~l~h~ni~~~~~ 72 (269)
T cd05065 50 RDFLSEASIMGQFDHPNIIHLEG 72 (269)
T ss_pred HHHHHHHHHHHhCCCcCcceEEE
Confidence 35778999999999999999864
No 229
>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p
Probab=34.67 E-value=18 Score=31.42 Aligned_cols=24 Identities=4% Similarity=-0.124 Sum_probs=20.6
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..+..|+++++++.|+|+|++...
T Consensus 44 ~~~~~E~~~l~~l~h~~iv~~~~~ 67 (279)
T cd06619 44 KQIMSELEILYKCDSPYIIGFYGA 67 (279)
T ss_pred HHHHHHHHHHHhCCCCCeeeEEEE
Confidence 357789999999999999998754
No 230
>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1. Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.
Probab=34.63 E-value=14 Score=31.38 Aligned_cols=22 Identities=23% Similarity=0.031 Sum_probs=19.6
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+.+|+++++++.|+|+|++.
T Consensus 45 ~~~~~e~~~l~~l~h~~i~~~~ 66 (258)
T cd05578 45 RNVLNERRILQELNHPFLVNLW 66 (258)
T ss_pred HHHHHHHHHHHhCCCCChHHHH
Confidence 5688899999999999999874
No 231
>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions
Probab=34.59 E-value=18 Score=31.12 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=19.0
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.|..|+++++++.|+|+|++.
T Consensus 53 ~~~~e~~~l~~~~h~~i~~~~ 73 (270)
T cd05056 53 KFLQEAYIMRQFDHPHIVKLI 73 (270)
T ss_pred HHHHHHHHHHhCCCCchhcee
Confidence 577899999999999999985
No 232
>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c
Probab=34.49 E-value=19 Score=30.45 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=19.2
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+++|+++.|+|++++.
T Consensus 38 ~~~~e~~~l~~l~h~~i~~~~ 58 (250)
T cd05085 38 KFLSEARILKQYDHPNIVKLI 58 (250)
T ss_pred HHHHHHHHHHhCCCCCcCeEE
Confidence 588999999999999999875
No 233
>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10. Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing
Probab=34.46 E-value=19 Score=31.77 Aligned_cols=22 Identities=23% Similarity=0.034 Sum_probs=19.2
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..++.|+++++++.|+|+|++.
T Consensus 51 ~~~~~E~~~l~~l~h~~i~~~~ 72 (309)
T cd07845 51 ISSLREITLLLNLRHPNIVELK 72 (309)
T ss_pred chhhHHHHHHHhCCCCCCcceE
Confidence 3567899999999999999975
No 234
>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea
Probab=34.33 E-value=18 Score=31.33 Aligned_cols=21 Identities=19% Similarity=0.018 Sum_probs=18.8
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+.+|+++.|+|+|++.
T Consensus 55 ~~~~e~~~l~~l~h~~i~~~~ 75 (279)
T cd05057 55 EILDEAYVMASVDHPHVVRLL 75 (279)
T ss_pred HHHHHHHHHHhCCCCCcceEE
Confidence 567899999999999999986
No 235
>KOG0597|consensus
Probab=34.28 E-value=13 Score=37.05 Aligned_cols=22 Identities=23% Similarity=0.125 Sum_probs=19.8
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.|..+|++|+++|.|||||.++
T Consensus 46 ~~l~~ev~i~r~lkHpniv~m~ 67 (808)
T KOG0597|consen 46 KNLRQEVRILRSLKHPNIVEML 67 (808)
T ss_pred HHHHHHHHHHHhcCCcchhhHH
Confidence 4678899999999999999986
No 236
>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t
Probab=34.24 E-value=17 Score=30.92 Aligned_cols=21 Identities=19% Similarity=0.030 Sum_probs=18.6
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+++++++.|+|||++.
T Consensus 50 ~~~~e~~~l~~l~~~~i~~~~ 70 (263)
T cd06625 50 ALECEIQLLKNLQHERIVQYY 70 (263)
T ss_pred HHHHHHHHHHhCCCCCeeeeE
Confidence 467799999999999999985
No 237
>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase
Probab=34.18 E-value=17 Score=31.05 Aligned_cols=21 Identities=14% Similarity=-0.004 Sum_probs=19.1
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.|..|+++++.+.|+|++++.
T Consensus 48 ~~~~e~~~l~~l~h~~i~~~~ 68 (267)
T cd08228 48 DCVKEIDLLKQLNHPNVIKYL 68 (267)
T ss_pred HHHHHHHHHHhCCCcceeeee
Confidence 578899999999999999986
No 238
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=34.18 E-value=23 Score=38.30 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=24.6
Q ss_pred hcccCCCceecCcCCcchhccc-ccCCCCCCC
Q psy3210 16 LKSRGLRPLCSQACYLACHKQC-IPHTGRCGT 46 (272)
Q Consensus 16 ~~g~~~qg~~c~~c~~~~h~~c-~~~~~~C~~ 46 (272)
||..+.|..+|.+||..-..-- .+.++.||+
T Consensus 1246 LraFsrQ~~RC~kC~~kyRR~PL~G~C~kCGg 1277 (1337)
T PRK14714 1246 LRAFSRQEFRCLKCGTKYRRMPLAGKCRKCGG 1277 (1337)
T ss_pred hhhhhccceeecccCcccccCCCCCcccccCC
Confidence 4556689999999999988776 566777877
No 239
>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa
Probab=34.16 E-value=17 Score=30.80 Aligned_cols=22 Identities=14% Similarity=-0.130 Sum_probs=19.4
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++|+++.|+|+|++.-
T Consensus 45 ~~~~e~~~l~~~~h~~i~~~~~ 66 (256)
T cd08221 45 DALNEIVILSLLQHPNIIAYYN 66 (256)
T ss_pred HHHHHHHHHHhCCCCCeeEEEe
Confidence 5678999999999999999864
No 240
>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional
Probab=34.16 E-value=19 Score=32.76 Aligned_cols=21 Identities=14% Similarity=-0.002 Sum_probs=18.2
Q ss_pred chhhhhhhccCCCCCccccee
Q psy3210 248 YWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~~~ 268 (272)
+..|+++|+.+.|||||++.-
T Consensus 78 ~~~E~~~l~~l~hp~Iv~~~~ 98 (340)
T PTZ00426 78 VFSERKILNYINHPFCVNLYG 98 (340)
T ss_pred HHHHHHHHHhCCCCCCcceEE
Confidence 456999999999999999863
No 241
>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase). Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It
Probab=33.73 E-value=19 Score=31.09 Aligned_cols=22 Identities=18% Similarity=-0.005 Sum_probs=18.7
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++|+++.|+|++++..
T Consensus 54 ~~~~e~~~l~~l~h~ni~~~~~ 75 (280)
T cd05043 54 LLLQESCLLYGLSHQNILPILH 75 (280)
T ss_pred HHHHHHHHHHhCCCCCCCeEEE
Confidence 3667999999999999999754
No 242
>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit. Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce
Probab=33.71 E-value=16 Score=33.72 Aligned_cols=22 Identities=23% Similarity=0.150 Sum_probs=19.1
Q ss_pred cchhhhhhhccC-CCCCccccee
Q psy3210 247 LYWGNFRLLSSL-FIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l-~h~~~v~~~~ 268 (272)
.+.+|+++|+.+ .|||||++.-
T Consensus 84 ~~~~Ei~il~~l~~HpnIv~l~~ 106 (375)
T cd05104 84 ALMSELKVLSYLGNHINIVNLLG 106 (375)
T ss_pred HHHHHHHHHHHhcCCcceeeeee
Confidence 467899999999 8999999863
No 243
>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl
Probab=33.69 E-value=19 Score=31.56 Aligned_cols=22 Identities=18% Similarity=-0.000 Sum_probs=18.7
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++|+++.|+|+|++.-
T Consensus 57 ~~~~e~~~l~~l~h~~iv~~~~ 78 (310)
T cd07865 57 TALREIKILQLLKHENVVNLIE 78 (310)
T ss_pred HHHHHHHHHHhCCCCCccceEE
Confidence 3467999999999999999863
No 244
>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha. Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype
Probab=33.65 E-value=19 Score=32.24 Aligned_cols=21 Identities=10% Similarity=0.015 Sum_probs=17.9
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+.+|+++++.++|||||++.
T Consensus 45 ~~~~e~~~l~~l~hpniv~~~ 65 (327)
T cd08227 45 FLQGELHVSKLFNHPNIVPYR 65 (327)
T ss_pred HHHHHHHHHHhcCCCCeeeEE
Confidence 345689999999999999975
No 245
>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1. Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the
Probab=33.56 E-value=17 Score=31.68 Aligned_cols=23 Identities=13% Similarity=-0.064 Sum_probs=19.4
Q ss_pred eccchhhhhhhccCCCCCcccce
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
...+.+|+++|+++.|+|++++.
T Consensus 48 ~~~~~~e~~~l~~l~h~ni~~~~ 70 (293)
T cd07843 48 PITSLREINILLKLQHPNIVTVK 70 (293)
T ss_pred hhhHHHHHHHHHhcCCCCEEEEE
Confidence 34567899999999999999975
No 246
>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc
Probab=33.38 E-value=18 Score=30.59 Aligned_cols=23 Identities=17% Similarity=-0.028 Sum_probs=20.2
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++++++.|+|++++.-
T Consensus 44 ~~~~~e~~~l~~l~h~~i~~~~~ 66 (256)
T cd08529 44 EEAIDEARVLAKLDSSYIIRYYE 66 (256)
T ss_pred HHHHHHHHHHHhcCCCCeehhee
Confidence 46888999999999999999763
No 247
>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3. Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th
Probab=33.28 E-value=18 Score=31.30 Aligned_cols=22 Identities=18% Similarity=0.036 Sum_probs=19.3
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++++++.|+|||++..
T Consensus 51 ~~~~e~~~l~~l~h~~iv~~~~ 72 (284)
T cd05081 51 DFEREIEILKSLQHDNIVKYKG 72 (284)
T ss_pred HHHHHHHHHHhCCCCCeeEEEE
Confidence 5678999999999999999864
No 248
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=33.15 E-value=19 Score=21.12 Aligned_cols=10 Identities=10% Similarity=0.198 Sum_probs=6.1
Q ss_pred ecCcCCcchh
Q psy3210 25 CSQACYLACH 34 (272)
Q Consensus 25 ~c~~c~~~~h 34 (272)
.|++||.+|-
T Consensus 3 lcpkcgvgvl 12 (36)
T PF09151_consen 3 LCPKCGVGVL 12 (36)
T ss_dssp B-TTTSSSBE
T ss_pred cCCccCceEE
Confidence 5777777664
No 249
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=32.81 E-value=25 Score=38.28 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=23.3
Q ss_pred hcccCCCceecCcCCcchhccc-ccCCCCCCC
Q psy3210 16 LKSRGLRPLCSQACYLACHKQC-IPHTGRCGT 46 (272)
Q Consensus 16 ~~g~~~qg~~c~~c~~~~h~~c-~~~~~~C~~ 46 (272)
||....|..+| +||+.-..-- .+.++.||+
T Consensus 1535 LRaFsrQ~~RC-kC~~kyRR~PL~G~C~kCGg 1565 (1627)
T PRK14715 1535 LRAFSRQEFRC-KCGAKYRRVPLKGKCPKCGS 1565 (1627)
T ss_pred hhhhhccceee-cCCCccccCCCCCcCcccCC
Confidence 44556799999 9999988766 556777876
No 250
>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85. Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.
Probab=32.79 E-value=18 Score=31.18 Aligned_cols=24 Identities=21% Similarity=0.023 Sum_probs=20.4
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..+..|+.+++++.|+|++++.-.
T Consensus 43 ~~~~~E~~~l~~l~h~~i~~~~~~ 66 (284)
T cd07836 43 STAIREISLMKELKHENIVRLHDV 66 (284)
T ss_pred HHHHHHHHHHHhhcCCCEeeeeee
Confidence 456789999999999999998754
No 251
>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including
Probab=32.71 E-value=21 Score=31.27 Aligned_cols=22 Identities=18% Similarity=0.150 Sum_probs=19.4
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.|..|+++|+++.|+|+|++.-
T Consensus 63 ~~~~ei~~l~~l~h~~i~~~~~ 84 (295)
T cd05097 63 DFLKEIKIMSRLKNPNIIRLLG 84 (295)
T ss_pred HHHHHHHHHHhCCCCCcCeEEE
Confidence 4778999999999999999864
No 252
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=32.70 E-value=38 Score=19.91 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=15.4
Q ss_pred eecCcCCcchhccc-ccCCCCCCC
Q psy3210 24 LCSQACYLACHKQC-IPHTGRCGT 46 (272)
Q Consensus 24 ~~c~~c~~~~h~~c-~~~~~~C~~ 46 (272)
|.|..||.-.--+- ....+.|+.
T Consensus 2 ~~C~~CGy~y~~~~~~~~CP~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEEAPWVCPVCGA 25 (33)
T ss_pred EECCCCCCEECCCcCCCcCcCCCC
Confidence 78889987755443 556677765
No 253
>COG1439 Predicted nucleic acid-binding protein, consists of a PIN domain and a Zn-ribbon module [General function prediction only]
Probab=32.43 E-value=22 Score=29.77 Aligned_cols=27 Identities=15% Similarity=0.142 Sum_probs=20.5
Q ss_pred cCCCceecCcCCcchhcccccCCCCCCC
Q psy3210 19 RGLRPLCSQACYLACHKQCIPHTGRCGT 46 (272)
Q Consensus 19 ~~~qg~~c~~c~~~~h~~c~~~~~~C~~ 46 (272)
.+.=.|+|..|+.-.+ .=.+.++.||+
T Consensus 135 v~~w~~rC~GC~~~f~-~~~~~Cp~CG~ 161 (177)
T COG1439 135 VRKWRLRCHGCKRIFP-EPKDFCPICGS 161 (177)
T ss_pred EeeeeEEEecCceecC-CCCCcCCCCCC
Confidence 3444699999988887 55666789987
No 254
>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu
Probab=32.23 E-value=20 Score=30.67 Aligned_cols=22 Identities=5% Similarity=0.016 Sum_probs=19.4
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+..|++.|+++.|+|+|++.
T Consensus 46 ~~~~~e~~~l~~l~h~~iv~~~ 67 (273)
T cd05035 46 EEFLSEAACMKDFDHPNVMKLI 67 (273)
T ss_pred HHHHHHHHHHHhCCCCCeeeEE
Confidence 3578899999999999999975
No 255
>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4. Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin
Probab=32.18 E-value=22 Score=31.39 Aligned_cols=21 Identities=19% Similarity=0.123 Sum_probs=18.7
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+.+++++.|+|+|++.
T Consensus 55 ~~~~e~~~~~~l~h~niv~~~ 75 (303)
T cd05110 55 EFMDEALIMASMDHPHLVRLL 75 (303)
T ss_pred HHHHHHHHHHhCCCCCcccEE
Confidence 467899999999999999975
No 256
>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment
Probab=32.04 E-value=20 Score=30.68 Aligned_cols=22 Identities=9% Similarity=0.067 Sum_probs=19.2
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..|..|+.+++++.|+||+++.
T Consensus 50 ~~~~~e~~~l~~l~h~~i~~~~ 71 (266)
T cd05033 50 LDFLTEASIMGQFDHPNIIRLE 71 (266)
T ss_pred HHHHHHHHHHHhCCCCCcceEe
Confidence 3577899999999999999975
No 257
>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes
Probab=32.00 E-value=19 Score=31.27 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=19.3
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+..|+++|+++.|+|||++.
T Consensus 45 ~~~~~E~~~l~~l~h~~iv~~~ 66 (287)
T cd07848 45 ETTLRELKMLRTLKQENIVELK 66 (287)
T ss_pred hhHHHHHHHHHhCCCccccchh
Confidence 4567899999999999999985
No 258
>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows
Probab=31.96 E-value=21 Score=30.39 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=20.3
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+|.+|+++++.+.|+|++++..
T Consensus 44 ~~~~~e~~~l~~l~~~~i~~~~~ 66 (256)
T cd05059 44 DDFIEEAKVMMKLSHPNLVQLYG 66 (256)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEE
Confidence 36888999999999999999864
No 259
>KOG0583|consensus
Probab=31.91 E-value=18 Score=33.81 Aligned_cols=18 Identities=22% Similarity=0.189 Sum_probs=16.7
Q ss_pred hhhhhhccCC-CCCcccce
Q psy3210 250 GNFRLLSSLF-IVPPVRLS 267 (272)
Q Consensus 250 eE~~~mk~l~-h~~~v~~~ 267 (272)
+|+.+|+.+. |||||||.
T Consensus 68 rEi~~~~~~~~HpnI~~l~ 86 (370)
T KOG0583|consen 68 REISILRRLRSHPNIIRLL 86 (370)
T ss_pred HHHHHHHHhccCCCEeEEE
Confidence 6899999999 99999986
No 260
>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase. Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M
Probab=31.79 E-value=20 Score=31.23 Aligned_cols=23 Identities=13% Similarity=-0.037 Sum_probs=19.8
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++++++.|+|+|++..
T Consensus 53 ~~~~~ei~~l~~l~h~~iv~~~~ 75 (288)
T cd05050 53 ADFQREAALMAEFDHPNIVKLLG 75 (288)
T ss_pred HHHHHHHHHHHhcCCCchheEEE
Confidence 35778999999999999999864
No 261
>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their
Probab=31.71 E-value=18 Score=30.80 Aligned_cols=24 Identities=17% Similarity=0.154 Sum_probs=20.5
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..+..|+++++.+.|+|||++...
T Consensus 48 ~~~~~e~~~l~~l~h~~iv~~~~~ 71 (268)
T cd06630 48 EALRKEIRLMARLNHPHIIRMLGA 71 (268)
T ss_pred HHHHHHHHHHHHcCCCceehhhce
Confidence 467789999999999999998643
No 262
>KOG1169|consensus
Probab=31.66 E-value=22 Score=35.63 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=20.5
Q ss_pred CCCceecCcCCcchhccc-ccCCCCCC
Q psy3210 20 GLRPLCSQACYLACHKQC-IPHTGRCG 45 (272)
Q Consensus 20 ~~qg~~c~~c~~~~h~~c-~~~~~~C~ 45 (272)
..||++|.-|+..||..| ......|.
T Consensus 126 ~~~g~~C~~C~~~vh~~C~~~~~~~~~ 152 (634)
T KOG1169|consen 126 IKQGLCCDWCGRTVHERCVRRADPECQ 152 (634)
T ss_pred ccCceeeccccchHHHHHHhhcCcccc
Confidence 379999999999999999 44444433
No 263
>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=31.50 E-value=21 Score=30.98 Aligned_cols=22 Identities=18% Similarity=0.011 Sum_probs=19.1
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++++.+.|+|||++..
T Consensus 53 ~~~~E~~~l~~l~h~niv~~~~ 74 (283)
T cd05090 53 EFQQEASLMAELHHPNIVCLLG 74 (283)
T ss_pred HHHHHHHHHhhCCCCCeeeEEE
Confidence 4667999999999999999864
No 264
>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po
Probab=30.91 E-value=23 Score=32.66 Aligned_cols=23 Identities=17% Similarity=-0.044 Sum_probs=20.1
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
.+..|+++|+++.|+|||++.+.
T Consensus 47 ~~~~E~~il~~l~h~~iv~l~~~ 69 (381)
T cd05626 47 HVKAERDILAEADNEWVVKLYYS 69 (381)
T ss_pred HHHHHHHHHHhcCCCCeeeeEEE
Confidence 46779999999999999999764
No 265
>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly
Probab=30.82 E-value=22 Score=31.04 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=19.1
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+.+|+++.|+|+|++.
T Consensus 53 ~~~~e~~~l~~l~h~~i~~~~ 73 (288)
T cd05093 53 DFHREAELLTNLQHEHIVKFY 73 (288)
T ss_pred HHHHHHHHHHhCCCCCcceEE
Confidence 578899999999999999985
No 266
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=30.67 E-value=22 Score=34.15 Aligned_cols=20 Identities=10% Similarity=-0.099 Sum_probs=17.6
Q ss_pred chhhhhhhccCCCCCcccce
Q psy3210 248 YWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~~ 267 (272)
+..|+++|+.+.|+|||++.
T Consensus 112 ~~~E~~~l~~l~Hpniv~~~ 131 (478)
T PTZ00267 112 ARSELHCLAACDHFGIVKHF 131 (478)
T ss_pred HHHHHHHHHhCCCCCEeEEE
Confidence 44599999999999999975
No 267
>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well
Probab=30.67 E-value=22 Score=30.80 Aligned_cols=23 Identities=17% Similarity=-0.023 Sum_probs=20.1
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
+|..|+.+++++.|+|||++...
T Consensus 55 ~~~~e~~~l~~l~~~~i~~~~~~ 77 (277)
T cd05036 55 DFLMEALIMSKFNHQNIVRLIGV 77 (277)
T ss_pred HHHHHHHHHHhCCCCCEeeEEEE
Confidence 57889999999999999998753
No 268
>PF07935 SSV1_ORF_D-335: ORF D-335-like protein; InterPro: IPR012922 The sequences featured in this family are similar to a probable integrase (P20214 from SWISSPROT) expressed by the SSV1 virus of the archaeon Sulfolobus shibatae. This protein may be necessary for the integration of the virus into the host genome by a process of site-specific recombination [].
Probab=30.62 E-value=1.3e+02 Score=21.38 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=28.7
Q ss_pred ceEEEEeCCCCCCCCCCCceEEEEeeCCeeeEEEEEEecCCCcceEEeecccccchhhhhhhhhhccc
Q psy3210 110 GTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNS 177 (272)
Q Consensus 110 G~FLVR~s~~~~~~~~~~~y~LSv~~~~~v~H~~I~~~~~g~~~~~~i~~~~~F~sL~eLV~~y~~~~ 177 (272)
|+|.||+.. +.| .=|+|...++|.. .+ ..-.+|.++|+.|-...
T Consensus 6 gd~~irE~K--------GkY----------YVY~iE~~~~G~~-----re-~YVGpL~~VVe~Yik~K 49 (72)
T PF07935_consen 6 GDIIIRERK--------GKY----------YVYKIEKDINGER-----RE-TYVGPLDDVVETYIKLK 49 (72)
T ss_pred CcEEEEEeC--------CeE----------EEEEEEeccCCce-----ee-eeeccHHHHHHHHHhcc
Confidence 789999883 555 3356766455421 11 23568999999998764
No 269
>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess
Probab=30.59 E-value=21 Score=31.11 Aligned_cols=22 Identities=23% Similarity=-0.065 Sum_probs=19.2
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++|+.+.|+|+++++-
T Consensus 49 ~~~~e~~~l~~l~h~ni~~~~~ 70 (291)
T cd07870 49 TAIREASLLKGLKHANIVLLHD 70 (291)
T ss_pred HHHHHHHHHHhcCCCCEeEEEE
Confidence 4678999999999999998864
No 270
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=30.58 E-value=24 Score=23.74 Aligned_cols=15 Identities=13% Similarity=0.233 Sum_probs=12.5
Q ss_pred CCCceecCcCCcchh
Q psy3210 20 GLRPLCSQACYLACH 34 (272)
Q Consensus 20 ~~qg~~c~~c~~~~h 34 (272)
..+-|.|+.||+..|
T Consensus 11 ~~v~~~Cp~cGipth 25 (55)
T PF13824_consen 11 AHVNFECPDCGIPTH 25 (55)
T ss_pred cccCCcCCCCCCcCc
Confidence 456789999999888
No 271
>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins. Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily
Probab=30.42 E-value=21 Score=31.47 Aligned_cols=21 Identities=14% Similarity=0.067 Sum_probs=18.6
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+++++++.|+|+|++.
T Consensus 61 ~~~~Ei~~l~~l~h~niv~~~ 81 (307)
T cd06607 61 DIIKEVRFLQQLRHPNTIEYK 81 (307)
T ss_pred HHHHHHHHHHhCCCCCEEEEE
Confidence 467899999999999999975
No 272
>KOG0588|consensus
Probab=30.41 E-value=20 Score=36.30 Aligned_cols=23 Identities=9% Similarity=-0.143 Sum_probs=18.8
Q ss_pred eccchhhhhhhccCCCCCcccce
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
|+.--.|+-+||-+.|||+++|-
T Consensus 56 ~~~IerEIviMkLi~HpnVl~Ly 78 (786)
T KOG0588|consen 56 PAGIEREIVIMKLIEHPNVLRLY 78 (786)
T ss_pred ccchhhhhHHHHHhcCCCeeeee
Confidence 34445699999999999999984
No 273
>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi
Probab=30.40 E-value=22 Score=30.28 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=19.5
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+..|+++|+.+.|+|+|++.
T Consensus 41 ~~~~~e~~~l~~l~h~~iv~~~ 62 (257)
T cd05060 41 KEFLREASVMAQLDHPCIVRLI 62 (257)
T ss_pred HHHHHHHHHHHhcCCCCeeeEE
Confidence 4678899999999999999975
No 274
>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
Probab=30.29 E-value=23 Score=30.21 Aligned_cols=23 Identities=17% Similarity=-0.036 Sum_probs=19.9
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++++++.|+||+++..
T Consensus 51 ~~~~~e~~~l~~l~h~~i~~~~~ 73 (267)
T cd06628 51 DALAREIALLKELQHENIVQYLG 73 (267)
T ss_pred HHHHHHHHHHHhcCCCCeeeEEE
Confidence 35778999999999999999874
No 275
>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=30.22 E-value=21 Score=32.42 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=18.6
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+.+|+.+++.+.|+|||++.
T Consensus 66 ~~~~E~~~l~~l~h~niv~~~ 86 (359)
T cd07876 66 RAYRELVLLKCVNHKNIISLL 86 (359)
T ss_pred HHHHHHHHHHhCCCCCEeeee
Confidence 466899999999999999985
No 276
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=30.22 E-value=28 Score=25.90 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=21.1
Q ss_pred cCCCceecCcCCcchhcccccCCCCCC
Q psy3210 19 RGLRPLCSQACYLACHKQCIPHTGRCG 45 (272)
Q Consensus 19 ~~~qg~~c~~c~~~~h~~c~~~~~~C~ 45 (272)
|..+.-.|++||....-.=++.+.+|.
T Consensus 54 Llv~Pa~CkkCGfef~~~~ik~pSRCP 80 (97)
T COG3357 54 LLVRPARCKKCGFEFRDDKIKKPSRCP 80 (97)
T ss_pred EEecChhhcccCccccccccCCcccCC
Confidence 456888999999999886677666664
No 277
>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the
Probab=30.02 E-value=23 Score=31.08 Aligned_cols=24 Identities=25% Similarity=0.010 Sum_probs=20.3
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..+..|+.+++++.|+|+|++.-.
T Consensus 47 ~~~~~e~~~l~~l~h~~i~~~~~~ 70 (316)
T cd07842 47 QSACREIALLRELKHENVVSLVEV 70 (316)
T ss_pred HHHHHHHHHHHhcCCCCccceEEE
Confidence 346789999999999999998753
No 278
>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.
Probab=30.00 E-value=26 Score=31.43 Aligned_cols=23 Identities=13% Similarity=0.002 Sum_probs=20.0
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
.+..|+++|+.+.|+|||++...
T Consensus 47 ~~~~e~~~l~~~~h~~iv~~~~~ 69 (333)
T cd05600 47 HVLTERDILTTTKSEWLVKLLYA 69 (333)
T ss_pred HHHHHHHHHHhCCCCCCccEEEE
Confidence 46789999999999999999753
No 279
>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g
Probab=29.99 E-value=24 Score=30.72 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=19.4
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++|++++|+|+|++..
T Consensus 39 ~~~~E~~il~~l~~~~i~~~~~ 60 (280)
T cd05608 39 GAMVEKRILAKVHSRFIVSLAY 60 (280)
T ss_pred HHHHHHHHHHhCCCCcEeeeeE
Confidence 4678999999999999999864
No 280
>KOG0598|consensus
Probab=29.81 E-value=26 Score=32.69 Aligned_cols=21 Identities=24% Similarity=0.126 Sum_probs=18.9
Q ss_pred hhhhhhhccCCCCCcccceec
Q psy3210 249 WGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 249 VeE~~~mk~l~h~~~v~~~~~ 269 (272)
..|.+||.+++||.||.|.||
T Consensus 73 ~~Er~IL~~v~hPFiv~l~ys 93 (357)
T KOG0598|consen 73 KAERNILSKIKHPFIVKLIYS 93 (357)
T ss_pred HHHHHHHHhCCCCcEeeeEEe
Confidence 358899999999999999987
No 281
>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio
Probab=29.69 E-value=23 Score=30.26 Aligned_cols=23 Identities=13% Similarity=-0.065 Sum_probs=20.1
Q ss_pred eccchhhhhhhccCCCCCcccce
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
...+..|+++|+++.|+|+|++.
T Consensus 40 ~~~~~~e~~~l~~l~h~~i~~~~ 62 (257)
T cd05116 40 KDELLREANVMQQLDNPYIVRMI 62 (257)
T ss_pred HHHHHHHHHHHHhCCCCCcceEE
Confidence 35688899999999999999885
No 282
>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr
Probab=29.64 E-value=25 Score=30.57 Aligned_cols=22 Identities=14% Similarity=0.010 Sum_probs=18.6
Q ss_pred chhhhhhhccCCCCCcccceec
Q psy3210 248 YWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
...|+++|+++.|+|||++...
T Consensus 40 ~~~E~~il~~l~hp~i~~~~~~ 61 (277)
T cd05607 40 ALLEKEILEKVNSPFIVNLAYA 61 (277)
T ss_pred HHHHHHHHHhcCCCcEEEEEEE
Confidence 4568999999999999998643
No 283
>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK
Probab=29.62 E-value=62 Score=29.16 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=17.3
Q ss_pred chhhhhhhccCCCCCcccce
Q psy3210 248 YWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~~ 267 (272)
+..|+.+++++.|+|+|++.
T Consensus 61 ~~~E~~~l~~l~h~~iv~~~ 80 (343)
T cd07851 61 TYRELRLLKHMDHENVIGLL 80 (343)
T ss_pred HHHHHHHHHhccCCCHHHHH
Confidence 44689999999999999875
No 284
>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase. Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ
Probab=29.56 E-value=23 Score=30.02 Aligned_cols=23 Identities=13% Similarity=0.015 Sum_probs=20.3
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+|..|+++++++.|+|++++.-
T Consensus 44 ~~~~~e~~~l~~l~~~~i~~~~~ 66 (256)
T cd05112 44 EDFIEEAQVMMKLSHPKLVQLYG 66 (256)
T ss_pred HHHHHHHHHHHhCCCCCeeeEEE
Confidence 46888999999999999999864
No 285
>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is
Probab=29.39 E-value=22 Score=32.04 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=17.8
Q ss_pred chhhhhhhccCCCCCcccce
Q psy3210 248 YWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~~ 267 (272)
+..|+++|+++.|+|||++.
T Consensus 61 ~~~E~~~l~~l~h~~iv~~~ 80 (343)
T cd07878 61 TYRELRLLKHMKHENVIGLL 80 (343)
T ss_pred HHHHHHHHHhcCCCchhhhh
Confidence 55799999999999999975
No 286
>PRK10345 hypothetical protein; Provisional
Probab=29.36 E-value=20 Score=30.69 Aligned_cols=22 Identities=9% Similarity=-0.067 Sum_probs=19.3
Q ss_pred ccchhhhhhhccC-----CCCCcccce
Q psy3210 246 QLYWGNFRLLSSL-----FIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l-----~h~~~v~~~ 267 (272)
.++..|+++++++ .|+||||+.
T Consensus 41 ~~~~rEi~~l~~L~~~~~~h~nIvr~y 67 (210)
T PRK10345 41 KEIRRELKYYAHLSRRLIDWSGIPRYY 67 (210)
T ss_pred HHHHHHHHHHHHhhccCCCCcccceee
Confidence 4688999999999 579999986
No 287
>KOG1769|consensus
Probab=29.28 E-value=2.2e+02 Score=21.49 Aligned_cols=48 Identities=19% Similarity=0.237 Sum_probs=31.2
Q ss_pred chhhhhhhhhhccccccccccccccccccceeeeeeeeccCCCC----CCCCCccCCCcEEEEeee
Q psy3210 164 RSIVELICCYERNSLIENFIGLNVRLQLPFRQIIAVAEFDFCPT----EANQLPLKQGCQVIVLSK 225 (272)
Q Consensus 164 ~sL~eLV~~y~~~~L~~~~~~l~~~L~~P~~~~~~~alydf~~~----~~~ELsl~~Gd~i~v~~k 225 (272)
..|..|.++|.... ++. ....+-+||=... .+++|.++.||.|.+...
T Consensus 41 t~LkKLM~aYc~r~------Gl~--------~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~ 92 (99)
T KOG1769|consen 41 TPLKKLMKAYCERQ------GLS--------MNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQE 92 (99)
T ss_pred ChHHHHHHHHHHHc------CCc--------cceEEEEECCcCcCCCCChhhhCCcCCcEEEEEee
Confidence 45777888997764 222 1234455554322 378999999999988753
No 288
>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio
Probab=29.16 E-value=25 Score=30.32 Aligned_cols=21 Identities=24% Similarity=0.192 Sum_probs=18.8
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+++++++.|+|+|++.
T Consensus 46 ~~~~e~~~l~~~~h~~i~~~~ 66 (286)
T cd07847 46 IALREIRMLKQLKHPNLVNLI 66 (286)
T ss_pred HHHHHHHHHHhCCCCCEeeee
Confidence 467899999999999999975
No 289
>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2
Probab=29.09 E-value=24 Score=30.51 Aligned_cols=22 Identities=23% Similarity=0.051 Sum_probs=19.1
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+..|+++++++.|+|++++.
T Consensus 44 ~~~~~e~~~l~~l~h~~i~~~~ 65 (285)
T cd07861 44 STAIREISLLKELQHPNIVCLQ 65 (285)
T ss_pred HHHHHHHHHHHhcCCCCEeeeE
Confidence 3466799999999999999986
No 290
>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly
Probab=29.03 E-value=27 Score=30.18 Aligned_cols=22 Identities=18% Similarity=-0.064 Sum_probs=18.9
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+.+|+.+++++.|+|||++.
T Consensus 53 ~~~~~e~~~~~~l~h~~iv~~~ 74 (283)
T cd05091 53 EEFKHEAMMRSRLQHPNIVCLL 74 (283)
T ss_pred HHHHHHHHHHhcCCCCCcCeEE
Confidence 3467899999999999999885
No 291
>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt
Probab=29.01 E-value=24 Score=30.35 Aligned_cols=24 Identities=13% Similarity=-0.002 Sum_probs=20.4
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..|.+|+++|+++.|+|++++...
T Consensus 53 ~~~~~e~~~l~~l~~~~i~~~~~~ 76 (280)
T cd05049 53 KDFEREAELLTNFQHENIVKFYGV 76 (280)
T ss_pred HHHHHHHHHHHhcCCCCchheeeE
Confidence 357789999999999999998653
No 292
>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase. Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription
Probab=28.97 E-value=23 Score=32.39 Aligned_cols=21 Identities=5% Similarity=-0.026 Sum_probs=18.9
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+++|+.+.|+|||++.
T Consensus 45 ~~~~E~~~l~~l~h~niv~~~ 65 (372)
T cd07853 45 RVFRELKMLCFFKHDNVLSAL 65 (372)
T ss_pred HHHHHHHHHHhCCCCCcCCHh
Confidence 577899999999999999875
No 293
>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,
Probab=28.92 E-value=24 Score=30.77 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=19.6
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++++.++|+|+|++..
T Consensus 45 ~~~~~E~~~l~~l~h~~iv~~~~ 67 (285)
T cd05605 45 AMALNEKQILEKVNSRFVVSLAY 67 (285)
T ss_pred HHHHHHHHHHHhcCCCCEeeeee
Confidence 34678999999999999999864
No 294
>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase. Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.
Probab=28.85 E-value=24 Score=30.62 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=19.3
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..|..|+++|+.+.|+|+|++.
T Consensus 47 ~~~~~e~~~l~~l~h~~ii~~~ 68 (282)
T cd06643 47 EDYMVEIDILASCDHPNIVKLL 68 (282)
T ss_pred HHHHHHHHHHHHCCCCCeeeEE
Confidence 3577899999999999999975
No 295
>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi
Probab=28.80 E-value=25 Score=29.63 Aligned_cols=22 Identities=23% Similarity=0.099 Sum_probs=19.0
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+..|+++|++++|+|+|++.
T Consensus 44 ~~~~~e~~~l~~l~~~~i~~~~ 65 (265)
T cd08217 44 QQLVSEVNILRELKHPNIVRYY 65 (265)
T ss_pred HHHHHHHHHHHhcCCCccceee
Confidence 3577899999999999999974
No 296
>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D
Probab=28.77 E-value=24 Score=33.15 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=18.8
Q ss_pred cchhhhhhhccCC-CCCcccce
Q psy3210 247 LYWGNFRLLSSLF-IVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~-h~~~v~~~ 267 (272)
.+..|+++|.++. |+|||++.
T Consensus 86 ~~~~E~~~l~~l~~H~niv~~~ 107 (401)
T cd05107 86 ALMSELKIMSHLGPHLNIVNLL 107 (401)
T ss_pred HHHHHHHHHHhcCCCCCeEEEE
Confidence 5778999999998 99999985
No 297
>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1. Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U
Probab=28.73 E-value=23 Score=31.86 Aligned_cols=22 Identities=23% Similarity=0.148 Sum_probs=19.1
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++++++.|||+|++.-
T Consensus 55 ~~~~E~~~l~~l~hpniv~~~~ 76 (328)
T cd07856 55 RTYRELKLLKHLRHENIISLSD 76 (328)
T ss_pred HHHHHHHHHHhcCCCCeeeEee
Confidence 4667999999999999999764
No 298
>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored
Probab=28.64 E-value=26 Score=29.99 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=19.8
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
.|..|+++++++.|+|++++.-.
T Consensus 52 ~~~~e~~~l~~l~h~~i~~~~~~ 74 (268)
T cd05063 52 DFLSEASIMGQFSHHNIIRLEGV 74 (268)
T ss_pred HHHHHHHHHhcCCCCCeeEEEEE
Confidence 57789999999999999998643
No 299
>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc
Probab=28.63 E-value=23 Score=30.62 Aligned_cols=24 Identities=25% Similarity=-0.021 Sum_probs=20.4
Q ss_pred eccchhhhhhhccCCCCCccccee
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
...+..|++++++++|+|+|++.-
T Consensus 42 ~~~~~~E~~~l~~l~~~~iv~~~~ 65 (283)
T cd07835 42 PSTAIREISLLKELNHPNIVRLLD 65 (283)
T ss_pred hhHHHHHHHHHHhcCCCCccCHhh
Confidence 346788999999999999999864
No 300
>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept
Probab=28.47 E-value=26 Score=31.02 Aligned_cols=22 Identities=18% Similarity=0.098 Sum_probs=19.1
Q ss_pred cchhhhhhhccC-CCCCccccee
Q psy3210 247 LYWGNFRLLSSL-FIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l-~h~~~v~~~~ 268 (272)
.+..|+++++++ .|+|||++.-
T Consensus 84 ~~~~E~~~l~~l~~h~~iv~~~~ 106 (302)
T cd05055 84 ALMSELKIMSHLGNHENIVNLLG 106 (302)
T ss_pred HHHHHHHHHHhccCCCCcceEEE
Confidence 477899999999 7999999864
No 301
>COG3677 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=28.43 E-value=26 Score=27.73 Aligned_cols=13 Identities=8% Similarity=0.100 Sum_probs=9.9
Q ss_pred CCceecCcCCcch
Q psy3210 21 LRPLCSQACYLAC 33 (272)
Q Consensus 21 ~qg~~c~~c~~~~ 33 (272)
.|.|+|+.|+-..
T Consensus 51 ~qRyrC~~C~~tf 63 (129)
T COG3677 51 HQRYKCKSCGSTF 63 (129)
T ss_pred ccccccCCcCcce
Confidence 7889998886543
No 302
>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi
Probab=28.35 E-value=27 Score=30.49 Aligned_cols=22 Identities=23% Similarity=-0.005 Sum_probs=19.1
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++|+++.|+|+|++.-
T Consensus 47 ~~~~e~~~l~~l~h~~i~~~~~ 68 (290)
T cd05580 47 HVLNEKRILQSIRHPFLVNLYG 68 (290)
T ss_pred HHHHHHHHHHhCCCCCccceee
Confidence 4678999999999999999853
No 303
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=28.27 E-value=31 Score=23.58 Aligned_cols=21 Identities=19% Similarity=0.139 Sum_probs=15.4
Q ss_pred ccCCCceecCcCCcchhcccc
Q psy3210 18 SRGLRPLCSQACYLACHKQCI 38 (272)
Q Consensus 18 g~~~qg~~c~~c~~~~h~~c~ 38 (272)
+++..-+.|..||..+...|.
T Consensus 20 ~~~~rrhhCr~CG~~vC~~Cs 40 (69)
T PF01363_consen 20 SLFRRRHHCRNCGRVVCSSCS 40 (69)
T ss_dssp BSSS-EEE-TTT--EEECCCS
T ss_pred CCceeeEccCCCCCEECCchh
Confidence 788999999999999999884
No 304
>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor. Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti
Probab=28.16 E-value=25 Score=32.47 Aligned_cols=22 Identities=23% Similarity=0.126 Sum_probs=19.2
Q ss_pred cchhhhhhhccC-CCCCccccee
Q psy3210 247 LYWGNFRLLSSL-FIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l-~h~~~v~~~~ 268 (272)
.+..|+++|+++ .|+|||++.-
T Consensus 87 ~~~~E~~il~~l~~h~nIv~~~~ 109 (374)
T cd05106 87 ALMSELKILSHLGQHKNIVNLLG 109 (374)
T ss_pred HHHHHHHHHHhhccCCceeeEee
Confidence 467899999999 8999999874
No 305
>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with
Probab=28.15 E-value=27 Score=30.44 Aligned_cols=24 Identities=13% Similarity=0.148 Sum_probs=20.7
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..+..|+++|+.++|+|+|++.+.
T Consensus 45 ~~~~~E~~il~~l~~~~i~~~~~~ 68 (285)
T cd05632 45 SMALNEKQILEKVNSQFVVNLAYA 68 (285)
T ss_pred HHHHHHHHHHHHcCCcCceeEEEE
Confidence 346789999999999999998764
No 306
>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase
Probab=27.91 E-value=26 Score=31.48 Aligned_cols=21 Identities=5% Similarity=-0.012 Sum_probs=18.5
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+++|++++++++|+|||++.
T Consensus 49 ~~~~E~~~l~~l~h~niv~~~ 69 (336)
T cd07849 49 RTLREIKILRRFKHENIIGIL 69 (336)
T ss_pred HHHHHHHHHHhCCCCCcCchh
Confidence 467799999999999999985
No 307
>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i
Probab=27.84 E-value=27 Score=30.46 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=20.6
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..++.|+++|+++.|+|+|++.+.
T Consensus 45 ~~~~~E~~il~~l~~~~iv~~~~~ 68 (285)
T cd05631 45 AMALNEKRILEKVNSRFVVSLAYA 68 (285)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEE
Confidence 357789999999999999998753
No 308
>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase. Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina
Probab=27.53 E-value=27 Score=29.89 Aligned_cols=21 Identities=19% Similarity=-0.067 Sum_probs=18.6
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+++++.++|+|||++.
T Consensus 51 ~~~~e~~~l~~l~h~~iv~~~ 71 (268)
T cd06624 51 PLHEEIALHSYLKHRNIVQYL 71 (268)
T ss_pred HHHHHHHHHHhcCCCCeeeee
Confidence 466799999999999999986
No 309
>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13
Probab=27.50 E-value=26 Score=31.69 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=19.1
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+.+|+++++++.|+|||++.
T Consensus 59 ~~~~~e~~~l~~l~h~niv~~~ 80 (342)
T cd07879 59 KRAYRELTLLKHMQHENVIGLL 80 (342)
T ss_pred hHHHHHHHHHHhcCCCCccchh
Confidence 3467899999999999999875
No 310
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=27.44 E-value=31 Score=21.01 Aligned_cols=11 Identities=18% Similarity=0.428 Sum_probs=9.1
Q ss_pred CCCceecCcCC
Q psy3210 20 GLRPLCSQACY 30 (272)
Q Consensus 20 ~~qg~~c~~c~ 30 (272)
..|-|+|+.|.
T Consensus 26 G~qryrC~~C~ 36 (36)
T PF03811_consen 26 GHQRYRCKDCR 36 (36)
T ss_pred CCEeEecCcCC
Confidence 47889999994
No 311
>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok
Probab=27.35 E-value=25 Score=31.86 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=18.5
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+.+|+.+|+.+.|+|||++.
T Consensus 62 ~~~~E~~~l~~l~h~niv~~~ 82 (355)
T cd07874 62 RAYRELVLMKCVNHKNIISLL 82 (355)
T ss_pred HHHHHHHHHHHhCCCchhcee
Confidence 466799999999999999985
No 312
>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re
Probab=27.17 E-value=19 Score=30.45 Aligned_cols=24 Identities=21% Similarity=0.074 Sum_probs=20.2
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..+..|+++++++.|+|++++...
T Consensus 38 ~~~~~e~~~l~~~~h~~i~~~~~~ 61 (265)
T cd05579 38 DQVLTERDILSQAQSPYVVKLYYS 61 (265)
T ss_pred HHHHHHHHHHHhCCCcchhHHHHh
Confidence 457788999999999999998653
No 313
>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1. Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron
Probab=27.14 E-value=27 Score=31.10 Aligned_cols=21 Identities=5% Similarity=0.014 Sum_probs=18.9
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+++++++.|+|+|++.
T Consensus 71 ~~~~e~~~l~~l~h~~iv~~~ 91 (317)
T cd06635 71 DIIKEVKFLQRIKHPNSIEYK 91 (317)
T ss_pred HHHHHHHHHHhCCCCCEEEEE
Confidence 577899999999999999976
No 314
>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological
Probab=27.14 E-value=27 Score=30.01 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=18.8
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.|..|+++|+.+.|+|+|++.
T Consensus 55 ~~~~e~~~l~~~~~~~i~~~~ 75 (277)
T cd05032 55 EFLNEASVMKEFNCHHVVRLL 75 (277)
T ss_pred HHHHHHHHHHhCCCCceeEEE
Confidence 577899999999999999975
No 315
>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po
Probab=27.10 E-value=24 Score=30.30 Aligned_cols=24 Identities=25% Similarity=0.032 Sum_probs=20.6
Q ss_pred eccchhhhhhhccCCCCCccccee
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
...+..|+++++++.|+|++++.-
T Consensus 42 ~~~~~~e~~~l~~l~~~~i~~~~~ 65 (287)
T cd07840 42 PITAIREIKLLQKLRHPNIVRLKE 65 (287)
T ss_pred hHHHHHHHHHHHhccCCCeeehee
Confidence 456888999999999999998763
No 316
>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5. Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the
Probab=27.06 E-value=26 Score=31.41 Aligned_cols=21 Identities=5% Similarity=0.025 Sum_probs=18.1
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+.+|+++.|+|||+++
T Consensus 50 ~~~~e~~~l~~l~h~~iv~~~ 70 (334)
T cd07855 50 RTLRELKILRHFKHDNIIAIR 70 (334)
T ss_pred HHHHHHHHHHhcCCCCccCHH
Confidence 456789999999999999875
No 317
>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK
Probab=26.92 E-value=75 Score=28.71 Aligned_cols=21 Identities=10% Similarity=-0.002 Sum_probs=18.1
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+++++++.|+|+|++.
T Consensus 61 ~~~~E~~~l~~l~h~~iv~~~ 81 (353)
T cd07850 61 RAYRELVLMKLVNHKNIIGLL 81 (353)
T ss_pred HHHHHHHHHHhcCCCCCccee
Confidence 355799999999999999875
No 318
>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6. Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi
Probab=26.90 E-value=23 Score=32.04 Aligned_cols=23 Identities=9% Similarity=-0.025 Sum_probs=19.8
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+.+|+++|+++.|+|||++..
T Consensus 47 ~~~~~Ei~~l~~l~h~~i~~~~~ 69 (342)
T cd07854 47 KHALREIKIIRRLDHDNIVKVYE 69 (342)
T ss_pred HHHHHHHHHHHhcCCCcchhhHh
Confidence 34778999999999999999864
No 319
>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta. Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig
Probab=26.72 E-value=30 Score=30.92 Aligned_cols=22 Identities=5% Similarity=-0.251 Sum_probs=18.6
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+.+|+.+++.+.|+|||+++
T Consensus 44 ~~~~~e~~~~~~l~h~niv~~~ 65 (328)
T cd08226 44 KALQNEVVLSHFFRHPNIMTSW 65 (328)
T ss_pred HHHHHHHHHHHhCCCCCcceEe
Confidence 3567788999999999999975
No 320
>PHA00626 hypothetical protein
Probab=26.71 E-value=33 Score=23.17 Aligned_cols=17 Identities=12% Similarity=0.055 Sum_probs=13.6
Q ss_pred CCceecCcCCcchhccc
Q psy3210 21 LRPLCSQACYLACHKQC 37 (272)
Q Consensus 21 ~qg~~c~~c~~~~h~~c 37 (272)
.|-|.|+.||...-|.-
T Consensus 21 snrYkCkdCGY~ft~~~ 37 (59)
T PHA00626 21 SDDYVCCDCGYNDSKDA 37 (59)
T ss_pred CcceEcCCCCCeechhh
Confidence 48899999998776654
No 321
>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk
Probab=26.54 E-value=27 Score=29.60 Aligned_cols=22 Identities=14% Similarity=0.095 Sum_probs=19.4
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+.+++++.|+|+|++.-
T Consensus 46 ~~~~e~~~l~~l~~~~i~~~~~ 67 (256)
T cd05039 46 AFLAEASVMTTLRHPNLVQLLG 67 (256)
T ss_pred HHHHHHHHHHhcCCcceeeeEE
Confidence 5778999999999999999863
No 322
>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1. Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25
Probab=26.48 E-value=26 Score=30.21 Aligned_cols=22 Identities=14% Similarity=-0.224 Sum_probs=19.2
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++++++.|+|||++.-
T Consensus 48 ~~~~e~~~l~~l~h~~i~~~~~ 69 (277)
T cd06642 48 DIQQEITVLSQCDSPYITRYYG 69 (277)
T ss_pred HHHHHHHHHHcCCCCccHhhhc
Confidence 4678999999999999999864
No 323
>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14
Probab=26.29 E-value=28 Score=31.57 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=18.2
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+.+|++++++++|+|||++.
T Consensus 62 ~~~~Ei~~l~~l~h~~iv~~~ 82 (345)
T cd07877 62 RTYRELRLLKHMKHENVIGLL 82 (345)
T ss_pred HHHHHHHHHHHcCCCccccee
Confidence 356799999999999999975
No 324
>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re
Probab=26.16 E-value=30 Score=29.60 Aligned_cols=22 Identities=18% Similarity=0.037 Sum_probs=18.8
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++++++.|+|||++.-
T Consensus 50 ~~~~E~~~l~~l~h~~i~~~~~ 71 (265)
T cd06652 50 ALECEIQLLKNLLHERIVQYYG 71 (265)
T ss_pred HHHHHHHHHHhcCCCCeeeEEe
Confidence 4667999999999999999764
No 325
>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ
Probab=26.12 E-value=30 Score=29.31 Aligned_cols=23 Identities=9% Similarity=-0.103 Sum_probs=19.8
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++++++.|+|+|++..
T Consensus 45 ~~~~~e~~~l~~~~h~~i~~~~~ 67 (262)
T cd06613 45 EIIQQEISMLKECRHPNIVAYFG 67 (262)
T ss_pred HHHHHHHHHHHhCCCCChhceEE
Confidence 45778999999999999999864
No 326
>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an
Probab=26.09 E-value=30 Score=31.75 Aligned_cols=23 Identities=22% Similarity=-0.015 Sum_probs=19.7
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
.+..|+++|+++.|+|||++...
T Consensus 47 ~~~~E~~il~~~~h~~iv~~~~~ 69 (382)
T cd05625 47 HVKAERDILAEADNEWVVRLYYS 69 (382)
T ss_pred HHHHHHHHHHhCCCCcCCeEEEE
Confidence 46679999999999999999753
No 327
>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha. Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien
Probab=25.98 E-value=34 Score=30.60 Aligned_cols=23 Identities=17% Similarity=-0.023 Sum_probs=19.7
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
.++.|+++|+++.|+|||++...
T Consensus 41 ~~~~e~~~l~~~~hp~i~~~~~~ 63 (325)
T cd05594 41 HTLTENRVLQNSRHPFLTALKYS 63 (325)
T ss_pred HHHHHHHHHHhCCCCCCCceEEE
Confidence 46789999999999999998653
No 328
>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int
Probab=25.87 E-value=29 Score=30.02 Aligned_cols=22 Identities=9% Similarity=-0.242 Sum_probs=19.3
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|++++++++|+|+|++..
T Consensus 48 ~~~~e~~~l~~l~h~~iv~~~~ 69 (277)
T cd06641 48 DIQQEITVLSQCDSPYVTKYYG 69 (277)
T ss_pred HHHHHHHHHHhcCCCCEeEEEE
Confidence 5677999999999999999864
No 329
>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is
Probab=25.80 E-value=30 Score=30.14 Aligned_cols=23 Identities=17% Similarity=-0.038 Sum_probs=19.6
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++++++.|+|+|++.-
T Consensus 47 ~~~~~e~~~l~~~~h~~i~~~~~ 69 (298)
T cd07841 47 FTALREIKLLQELKHPNIIGLLD 69 (298)
T ss_pred HHHHHHHHHHhhcCCCCChhhhh
Confidence 34678999999999999999864
No 330
>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=25.69 E-value=28 Score=30.20 Aligned_cols=22 Identities=5% Similarity=-0.046 Sum_probs=19.5
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+..|+++++.++|+|||++.
T Consensus 48 ~~~~~E~~~l~~l~h~~i~~~~ 69 (284)
T cd06620 48 KQILRELQIMHECRSPYIVSFY 69 (284)
T ss_pred HHHHHHHHHHHHcCCCCcceEe
Confidence 4577899999999999999986
No 331
>PTZ00024 cyclin-dependent protein kinase; Provisional
Probab=25.59 E-value=30 Score=30.95 Aligned_cols=21 Identities=5% Similarity=0.048 Sum_probs=19.1
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+.+|+++++++.|+|+|++.
T Consensus 66 ~~~~E~~~l~~l~h~~iv~~~ 86 (335)
T PTZ00024 66 TTLRELKIMNEIKHENIMGLV 86 (335)
T ss_pred hHHHHHHHHHhCCCcceeeee
Confidence 578899999999999999976
No 332
>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase. Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12
Probab=25.53 E-value=31 Score=31.18 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=18.4
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+++|+++.|+|||++.
T Consensus 60 ~~~~E~~~l~~l~h~~iv~~~ 80 (343)
T cd07880 60 RAYRELRLLKHMKHENVIGLL 80 (343)
T ss_pred HHHHHHHHHHhcCCCCcccee
Confidence 466799999999999999875
No 333
>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development
Probab=25.52 E-value=31 Score=29.56 Aligned_cols=22 Identities=18% Similarity=-0.032 Sum_probs=18.8
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|++++++++|+||+++.-
T Consensus 50 ~~~~e~~~l~~l~h~~i~~~~~ 71 (266)
T cd06651 50 ALECEIQLLKNLQHERIVQYYG 71 (266)
T ss_pred HHHHHHHHHHHcCCCCeeeEEE
Confidence 3667899999999999999763
No 334
>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=25.49 E-value=33 Score=29.27 Aligned_cols=23 Identities=13% Similarity=-0.129 Sum_probs=19.6
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
.+..|+.+++++.|+|+|++..+
T Consensus 52 ~~~~e~~~l~~~~h~~ii~~~~~ 74 (267)
T cd06646 52 LIQQEIFMVKECKHCNIVAYFGS 74 (267)
T ss_pred HHHHHHHHHHhcCCCCeeeeeEE
Confidence 35679999999999999998764
No 335
>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)
Probab=25.28 E-value=31 Score=29.67 Aligned_cols=23 Identities=13% Similarity=-0.165 Sum_probs=20.0
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
.+..|+++++++.|+|++++...
T Consensus 45 ~~~~e~~~l~~l~h~~i~~~~~~ 67 (274)
T cd06609 45 DIQQEIQFLSQCRSPYITKYYGS 67 (274)
T ss_pred HHHHHHHHHHHcCCCCeeeeeEE
Confidence 56789999999999999998754
No 336
>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of
Probab=25.20 E-value=36 Score=31.23 Aligned_cols=22 Identities=14% Similarity=-0.135 Sum_probs=18.9
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++|+++.|+|||++..
T Consensus 47 ~~~~E~~il~~l~hp~iv~~~~ 68 (377)
T cd05629 47 HVKAERDVLAESDSPWVVSLYY 68 (377)
T ss_pred HHHHHHHHHHhCCCCCcceEEE
Confidence 4567999999999999999864
No 337
>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3. Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co
Probab=25.18 E-value=32 Score=30.59 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=19.3
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++++.++|+|+|++.-
T Consensus 67 ~~~~E~~~l~~l~h~~iv~~~~ 88 (313)
T cd06633 67 DIIKEVKFLQQLKHPNTIEYKG 88 (313)
T ss_pred HHHHHHHHHHhCCCCCCccEEE
Confidence 4678999999999999999874
No 338
>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase. Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea
Probab=25.15 E-value=29 Score=29.90 Aligned_cols=23 Identities=13% Similarity=-0.068 Sum_probs=20.4
Q ss_pred eccchhhhhhhccCCCCCcccce
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
+..+..|+.+++++.|+|++++.
T Consensus 43 ~~~~~~e~~~l~~~~~~~i~~~~ 65 (286)
T cd07832 43 PNQALREIKALQACQHPYVVKLL 65 (286)
T ss_pred hHHHHHHHHHHHhCCCCCCccee
Confidence 45788999999999999999875
No 339
>KOG0580|consensus
Probab=25.08 E-value=38 Score=30.20 Aligned_cols=23 Identities=17% Similarity=0.039 Sum_probs=19.4
Q ss_pred eeccchhhhhhhccCCCCCcccc
Q psy3210 244 FFQLYWGNFRLLSSLFIVPPVRL 266 (272)
Q Consensus 244 fP~~yVeE~~~mk~l~h~~~v~~ 266 (272)
++...-+|+.|=..|+||||.||
T Consensus 65 v~~qlrREiEIqs~L~hpnilrl 87 (281)
T KOG0580|consen 65 VEHQLRREIEIQSHLRHPNILRL 87 (281)
T ss_pred chhhhhheeEeecccCCccHHhh
Confidence 45566779999999999999997
No 340
>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with
Probab=25.06 E-value=33 Score=28.95 Aligned_cols=21 Identities=10% Similarity=-0.077 Sum_probs=18.8
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+++++.+.|+|+++++
T Consensus 45 ~~~~e~~~l~~~~~~~i~~~~ 65 (256)
T cd08220 45 AAQNECQVLKLLSHPNIIEYY 65 (256)
T ss_pred HHHHHHHHHhhCCCCchhhee
Confidence 577899999999999999876
No 341
>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2. Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A
Probab=25.03 E-value=32 Score=30.39 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=19.3
Q ss_pred cchhhhhhhccC-CCCCcccceec
Q psy3210 247 LYWGNFRLLSSL-FIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l-~h~~~v~~~~~ 269 (272)
.+.+|+++++++ .|+|||+++..
T Consensus 53 ~~~~Ei~~l~~l~~h~~iv~~~~~ 76 (303)
T cd05088 53 DFAGELEVLCKLGHHPNIINLLGA 76 (303)
T ss_pred HHHHHHHHHHHhcCCCCcceEEEE
Confidence 466799999999 89999998754
No 342
>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte
Probab=25.00 E-value=32 Score=29.46 Aligned_cols=23 Identities=13% Similarity=-0.073 Sum_probs=19.6
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
.+..|+++|+++.|+|+|++...
T Consensus 54 ~~~~e~~~l~~l~h~~i~~~~~~ 76 (272)
T cd06629 54 ALRSEIETLKDLDHLNIVQYLGF 76 (272)
T ss_pred HHHHHHHHHHhcCCCCcceEEEE
Confidence 46679999999999999998754
No 343
>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors. Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer
Probab=24.86 E-value=34 Score=29.53 Aligned_cols=23 Identities=26% Similarity=0.059 Sum_probs=19.8
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..|..|+++|+++.|+|++++.-
T Consensus 53 ~~~~~ei~~l~~l~h~~i~~~~~ 75 (283)
T cd05048 53 QEFRQEAELMSDLQHPNIVCLLG 75 (283)
T ss_pred HHHHHHHHHHHhcCCcccceEEE
Confidence 34778999999999999999874
No 344
>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter
Probab=24.79 E-value=33 Score=29.65 Aligned_cols=24 Identities=13% Similarity=-0.168 Sum_probs=20.7
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..+..|+++++++.|+|+|++...
T Consensus 47 ~~~~~e~~~l~~l~h~~i~~~~~~ 70 (277)
T cd06640 47 EDIQQEITVLSQCDSPYVTKYYGS 70 (277)
T ss_pred HHHHHHHHHHHhCCCCCEeeEEEE
Confidence 357789999999999999998764
No 345
>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to
Probab=24.76 E-value=28 Score=31.21 Aligned_cols=23 Identities=4% Similarity=-0.075 Sum_probs=19.6
Q ss_pred ccchhhhhhhccC-CCCCccccee
Q psy3210 246 QLYWGNFRLLSSL-FIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l-~h~~~v~~~~ 268 (272)
..+..|+++|+++ .|+|||++.-
T Consensus 62 ~~~~~E~~~l~~l~~h~~iv~~~~ 85 (334)
T cd05100 62 SDLVSEMEMMKMIGKHKNIINLLG 85 (334)
T ss_pred HHHHHHHHHHHhhcCCCCeeeeeE
Confidence 3577899999999 8999999764
No 346
>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n
Probab=24.64 E-value=38 Score=29.57 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=20.4
Q ss_pred ccchhhhhhhccCCCCCcccceec
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
..|..|+++++++.|+|+|++...
T Consensus 52 ~~~~~e~~~l~~l~h~~i~~~~~~ 75 (291)
T cd05094 52 KDFQREAELLTNLQHEHIVKFYGV 75 (291)
T ss_pred HHHHHHHHHHhcCCCCCcceEEEE
Confidence 357789999999999999998753
No 347
>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases. Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include
Probab=24.50 E-value=26 Score=30.33 Aligned_cols=23 Identities=9% Similarity=-0.125 Sum_probs=19.9
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++++++.|+|+|++.-
T Consensus 44 ~~~~~e~~~l~~~~~~~i~~~~~ 66 (286)
T cd06622 44 NQIIMELDILHKAVSPYIVDFYG 66 (286)
T ss_pred HHHHHHHHHHHhcCCCcHHhhhh
Confidence 35778999999999999999863
No 348
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=24.46 E-value=70 Score=23.17 Aligned_cols=29 Identities=28% Similarity=0.486 Sum_probs=21.6
Q ss_pred ccCCCceEEEEeCCCCCCCCCCCceEEEEeeCCe
Q psy3210 105 EREADGTYLLRIRPQGPTHPNETIYALSLKTDEK 138 (272)
Q Consensus 105 ~~~~~G~FLVR~s~~~~~~~~~~~y~LSv~~~~~ 138 (272)
.+..+|+|.|+-.... .|.|.|+|+.++.
T Consensus 65 ~~~~~G~y~v~y~p~~-----~G~y~i~V~~~g~ 93 (101)
T PF00630_consen 65 IDNGDGTYTVSYTPTE-----PGKYKISVKINGQ 93 (101)
T ss_dssp EEESSSEEEEEEEESS-----SEEEEEEEEESSE
T ss_pred EECCCCEEEEEEEeCc-----cEeEEEEEEECCE
Confidence 3456799999877643 5889999888763
No 349
>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.
Probab=24.34 E-value=32 Score=29.04 Aligned_cols=23 Identities=13% Similarity=-0.104 Sum_probs=19.5
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|++++++++|+|+|++.-
T Consensus 44 ~~~~~E~~~l~~~~h~~i~~~~~ 66 (257)
T cd08225 44 EASKKEVILLAKMKHPNIVTFFA 66 (257)
T ss_pred HHHHHHHHHHHhCCCCChhhhhh
Confidence 35668999999999999999863
No 350
>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor. Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.
Probab=24.28 E-value=37 Score=31.05 Aligned_cols=23 Identities=13% Similarity=-0.078 Sum_probs=19.6
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++|+++.|+|||++..
T Consensus 46 ~~~~~E~~il~~l~h~~iv~~~~ 68 (376)
T cd05598 46 AHVKAERDILAEADNEWVVKLYY 68 (376)
T ss_pred HHHHHHHHHHHhCCCCCcceEEE
Confidence 34667999999999999999864
No 351
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=24.27 E-value=38 Score=18.73 Aligned_cols=11 Identities=18% Similarity=0.377 Sum_probs=8.5
Q ss_pred CCceecCcCCc
Q psy3210 21 LRPLCSQACYL 31 (272)
Q Consensus 21 ~qg~~c~~c~~ 31 (272)
.--|.|+.||.
T Consensus 14 ~v~f~CPnCG~ 24 (24)
T PF07754_consen 14 AVPFPCPNCGF 24 (24)
T ss_pred CceEeCCCCCC
Confidence 45689999983
No 352
>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein. Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc
Probab=24.24 E-value=31 Score=30.40 Aligned_cols=21 Identities=10% Similarity=-0.152 Sum_probs=18.7
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+++|+.+.|+|||++.
T Consensus 45 ~~~~Ei~~l~~l~h~~i~~~~ 65 (314)
T cd08216 45 LLQQEIITSRQLQHPNILPYV 65 (314)
T ss_pred HHHHHHHHHHhcCCcchhhhh
Confidence 577899999999999999975
No 353
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta
Probab=24.12 E-value=35 Score=29.72 Aligned_cols=22 Identities=14% Similarity=0.083 Sum_probs=19.2
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+.+|+.+.|+|+++++-
T Consensus 55 ~~~~e~~~l~~l~~~~i~~~~~ 76 (288)
T cd05061 55 EFLNEASVMKGFTCHHVVRLLG 76 (288)
T ss_pred HHHHHHHHHHhCCCCCeeeEEE
Confidence 4677899999999999999874
No 355
>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2. Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a
Probab=24.11 E-value=31 Score=29.06 Aligned_cols=23 Identities=13% Similarity=-0.055 Sum_probs=20.2
Q ss_pred eccchhhhhhhccCCCCCcccce
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
...+.+|+++++++.|+|++++.
T Consensus 42 ~~~~~~e~~~~~~l~~~~i~~~~ 64 (256)
T cd06612 42 LQEIIKEISILKQCDSPYIVKYY 64 (256)
T ss_pred HHHHHHHHHHHHhCCCCcEeeee
Confidence 35688999999999999999875
No 356
>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI
Probab=23.99 E-value=26 Score=30.24 Aligned_cols=24 Identities=21% Similarity=0.080 Sum_probs=20.1
Q ss_pred eccchhhhhhhccCCCCCccccee
Q psy3210 245 FQLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 245 P~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
...+.+|+++|+.+.|+|++++.-
T Consensus 44 ~~~~~~e~~~l~~l~h~~i~~~~~ 67 (286)
T cd07846 44 KKIAMREIRMLKQLRHENLVNLIE 67 (286)
T ss_pred hHHHHHHHHHHHhcCCcchhhHHH
Confidence 345778999999999999998753
No 357
>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase. Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in
Probab=23.89 E-value=39 Score=31.09 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=18.7
Q ss_pred chhhhhhhccCCCCCccccee
Q psy3210 248 YWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~~~ 268 (272)
+.+|+++|+.++|+|||++..
T Consensus 90 ~~~e~~il~~~~h~~iv~~~~ 110 (370)
T cd05596 90 FWEERDIMAHANSEWIVQLHY 110 (370)
T ss_pred HHHHHHHHHhCCCCCcceEEE
Confidence 567999999999999999974
No 358
>KOG4718|consensus
Probab=23.85 E-value=25 Score=30.29 Aligned_cols=22 Identities=18% Similarity=0.517 Sum_probs=19.4
Q ss_pred cccCCCceecCcCCcchhcccc
Q psy3210 17 KSRGLRPLCSQACYLACHKQCI 38 (272)
Q Consensus 17 ~g~~~qg~~c~~c~~~~h~~c~ 38 (272)
+-|.-||-+|..|||.-|-.|+
T Consensus 188 h~LvIqg~rCg~c~i~~h~~c~ 209 (235)
T KOG4718|consen 188 HCLVIQGIRCGSCNIQYHRGCI 209 (235)
T ss_pred HHHhheeeccCcccchhhhHHH
Confidence 4577899999999999999993
No 359
>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase. Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a
Probab=23.82 E-value=37 Score=29.91 Aligned_cols=23 Identities=13% Similarity=-0.148 Sum_probs=20.1
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
.+.+|+++++.+.|+|||++...
T Consensus 47 ~~~~e~~~l~~~~~~~i~~~~~~ 69 (305)
T cd05609 47 QVFVERDILTFAENPFVVSMFCS 69 (305)
T ss_pred HHHHHHHHHHhCCCCCeeeeEEE
Confidence 57789999999999999998754
No 360
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=23.78 E-value=34 Score=22.69 Aligned_cols=24 Identities=17% Similarity=0.177 Sum_probs=13.2
Q ss_pred ehhcccCCCceecCcCCcchhccc
Q psy3210 14 VTLKSRGLRPLCSQACYLACHKQC 37 (272)
Q Consensus 14 ~~~~g~~~qg~~c~~c~~~~h~~c 37 (272)
.--+....|+-+|+.|++.+-..+
T Consensus 15 ~k~~~~S~~PatCP~C~a~~~~sr 38 (54)
T PF09237_consen 15 PKSKSQSEQPATCPICGAVIRQSR 38 (54)
T ss_dssp -CCCCTTS--EE-TTT--EESSHH
T ss_pred HHHhhccCCCCCCCcchhhccchh
Confidence 334677899999999998776544
No 361
>COG3168 PilP Tfp pilus assembly protein PilP [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=23.72 E-value=60 Score=26.68 Aligned_cols=47 Identities=26% Similarity=0.521 Sum_probs=25.3
Q ss_pred CCcceeecCccCcCCccccc----EeeeeCCHHHHHHhcccCCCceEEEEe
Q psy3210 70 GGNEWTAKSWADHENLSEYL----WFVGEMGREKATSLLEREADGTYLLRI 116 (272)
Q Consensus 70 ~~~g~~P~~~~~~~~l~~~~----Wf~g~isR~~Ae~lL~~~~~G~FLVR~ 116 (272)
++++|-|.......-|+.++ -+.|.|+|-+-...|...++|+|-||.
T Consensus 75 ~~n~~~Pdp~r~kepLE~fpLe~~rlvGtm~~g~~~~A~i~~~~~v~~V~v 125 (170)
T COG3168 75 GENDWAPDPKRRKEPLEKFPLETFRLVGTLKSGQGVSALIEAPGGVYRVRV 125 (170)
T ss_pred ccCCCCCCcccccCchhhCChhheeeEEEecCCCceEEEEEcCCceEEEee
Confidence 44567776665555555543 356666655544444444455544444
No 362
>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l
Probab=23.68 E-value=34 Score=29.42 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=19.7
Q ss_pred ccchhhhhhhccC-CCCCccccee
Q psy3210 246 QLYWGNFRLLSSL-FIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l-~h~~~v~~~~ 268 (272)
..|..|+++++++ .|+|+|++..
T Consensus 40 ~~~~~E~~~l~~l~~h~~iv~~~~ 63 (270)
T cd05047 40 RDFAGELEVLCKLGHHPNIINLLG 63 (270)
T ss_pred HHHHHHHHHHHhhccCCCeeeEEE
Confidence 3577899999999 8999999864
No 363
>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3. Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r
Probab=23.65 E-value=38 Score=29.41 Aligned_cols=22 Identities=23% Similarity=-0.064 Sum_probs=18.1
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
++..|+.+++++.|+|||++.-
T Consensus 55 ~~~~~~~~l~~l~h~~iv~~~~ 76 (279)
T cd05111 55 EITDHMLAMGSLDHAYIVRLLG 76 (279)
T ss_pred HHHHHHHHHhcCCCCCcceEEE
Confidence 4666777899999999999863
No 364
>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases. Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho
Probab=23.64 E-value=36 Score=29.10 Aligned_cols=22 Identities=18% Similarity=-0.056 Sum_probs=19.3
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++++++.|+||+++..
T Consensus 50 ~~~~ei~~l~~l~h~~i~~~~~ 71 (264)
T cd06653 50 ALECEIQLLKNLRHDRIVQYYG 71 (264)
T ss_pred HHHHHHHHHHHcCCCCcceEEE
Confidence 5677999999999999999874
No 365
>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning
Probab=23.56 E-value=34 Score=29.47 Aligned_cols=23 Identities=17% Similarity=0.039 Sum_probs=20.2
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++|+++.|+|++++..
T Consensus 45 ~~~~~e~~~l~~l~~~~i~~~~~ 67 (288)
T cd07833 45 KTALREVKVLRQLRHENIVNLKE 67 (288)
T ss_pred hHHHHHHHHHHhcCCCCeeehhh
Confidence 46788999999999999999864
No 366
>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A. Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory
Probab=23.19 E-value=39 Score=29.26 Aligned_cols=22 Identities=23% Similarity=0.049 Sum_probs=19.6
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++++.+.|+||+++..
T Consensus 53 ~~~~e~~~l~~l~h~~i~~~~~ 74 (280)
T cd05092 53 DFQREAELLTVLQHQHIVRFYG 74 (280)
T ss_pred HHHHHHHHHhcCCCCCCceEEE
Confidence 5778999999999999999864
No 367
>KOG1829|consensus
Probab=23.11 E-value=22 Score=35.36 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=18.3
Q ss_pred ceecCcCCcchhcccccCCCC
Q psy3210 23 PLCSQACYLACHKQCIPHTGR 43 (272)
Q Consensus 23 g~~c~~c~~~~h~~c~~~~~~ 43 (272)
-.+|..|+.-.|++|+.+...
T Consensus 531 ~~rC~~C~avfH~~C~~r~s~ 551 (580)
T KOG1829|consen 531 TRRCSTCLAVFHKKCLRRKSP 551 (580)
T ss_pred ceeHHHHHHHHHHHHHhccCC
Confidence 468999999999999888666
No 368
>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found
Probab=23.07 E-value=37 Score=31.28 Aligned_cols=21 Identities=14% Similarity=0.164 Sum_probs=18.7
Q ss_pred chhhhhhhccCCCCCccccee
Q psy3210 248 YWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~~~ 268 (272)
+.+|+.+|+.+.|||||++.-
T Consensus 90 ~~~e~~i~~~~~hp~iv~~~~ 110 (370)
T cd05621 90 FWEERDIMAFANSPWVVQLFC 110 (370)
T ss_pred HHHHHHHHHhCCCCCEeeEEE
Confidence 668999999999999999874
No 369
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti
Probab=22.94 E-value=37 Score=28.71 Aligned_cols=23 Identities=13% Similarity=-0.049 Sum_probs=19.9
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++++++.|+|++++.-
T Consensus 44 ~~~~~e~~~l~~l~~~~i~~~~~ 66 (256)
T cd08218 44 EESRKEVAVLSNMKHPNIVQYQE 66 (256)
T ss_pred HHHHHHHHHHHhCCCCCeeeeEe
Confidence 36788999999999999999763
No 371
>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains. Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an
Probab=22.86 E-value=33 Score=28.82 Aligned_cols=22 Identities=14% Similarity=-0.024 Sum_probs=19.1
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+.+|+++++++.|+|++++.-
T Consensus 45 ~~~~e~~~l~~l~~~~i~~~~~ 66 (256)
T cd08530 45 DAVNEIRILASVNHPNIISYKE 66 (256)
T ss_pred HHHHHHHHHHhCCCCCchhhhh
Confidence 5678999999999999999863
No 372
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=22.82 E-value=39 Score=32.25 Aligned_cols=15 Identities=7% Similarity=0.171 Sum_probs=9.6
Q ss_pred CceecCcCCcchhcc
Q psy3210 22 RPLCSQACYLACHKQ 36 (272)
Q Consensus 22 qg~~c~~c~~~~h~~ 36 (272)
.||+|++||..+...
T Consensus 366 ~g~rC~kCg~~~~~~ 380 (421)
T COG1571 366 NGFRCKKCGTRARET 380 (421)
T ss_pred CCcccccccccCCcc
Confidence 377777777665543
No 373
>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase. Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi
Probab=22.58 E-value=37 Score=28.84 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=20.1
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++++++.|+|++++..
T Consensus 38 ~~~~~e~~~l~~l~h~~i~~~~~ 60 (262)
T cd05572 38 EHIFSEKEILEECNHPFIVKLYR 60 (262)
T ss_pred HHHHHHHHHHHhCCCCCEeeeee
Confidence 45888999999999999999864
No 374
>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi
Probab=22.53 E-value=37 Score=29.81 Aligned_cols=21 Identities=10% Similarity=-0.092 Sum_probs=18.4
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+.+++++.|+|+|++.
T Consensus 62 ~~~~e~~~l~~l~hp~i~~~~ 82 (293)
T cd06647 62 LIINEILVMRENKHPNIVNYL 82 (293)
T ss_pred HHHHHHHHHhhcCCCCeeehh
Confidence 467789999999999999976
No 375
>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1. Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a
Probab=22.32 E-value=39 Score=29.27 Aligned_cols=23 Identities=13% Similarity=0.070 Sum_probs=19.9
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++++++.|+|++++.-
T Consensus 51 ~~~~~e~~~l~~l~h~~i~~~~~ 73 (284)
T cd05079 51 ADLKKEIEILRNLYHENIVKYKG 73 (284)
T ss_pred HHHHHHHHHHHhCCCCCeeeeee
Confidence 45778999999999999999763
No 376
>PRK11823 DNA repair protein RadA; Provisional
Probab=22.28 E-value=50 Score=31.74 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=21.1
Q ss_pred CCceecCcCCcchhcccccCCCCCCCC
Q psy3210 21 LRPLCSQACYLACHKQCIPHTGRCGTG 47 (272)
Q Consensus 21 ~qg~~c~~c~~~~h~~c~~~~~~C~~~ 47 (272)
+-.|+|..||...+ ++...++.|+.=
T Consensus 5 ~~~y~C~~Cg~~~~-~~~g~Cp~C~~w 30 (446)
T PRK11823 5 KTAYVCQECGAESP-KWLGRCPECGAW 30 (446)
T ss_pred CCeEECCcCCCCCc-ccCeeCcCCCCc
Confidence 45799999999876 578888999753
No 377
>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4. Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.
Probab=22.16 E-value=39 Score=28.80 Aligned_cols=23 Identities=26% Similarity=0.062 Sum_probs=19.6
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
.+.+|+++++++.|+|||++.-.
T Consensus 48 ~~~~e~~~l~~l~~~~i~~~~~~ 70 (265)
T cd06631 48 KLQEEVDLLKSLKHVNIVQYLGT 70 (265)
T ss_pred HHHHHHHHHHhcCCCCEeeEeeE
Confidence 46779999999999999998743
No 378
>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k
Probab=22.10 E-value=41 Score=28.31 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=19.5
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+..|+++++++.|+||+++.
T Consensus 37 ~~~~~e~~~l~~l~~~~i~~~~ 58 (251)
T cd05041 37 RKFLQEAEILKQYDHPNIVKLI 58 (251)
T ss_pred HHHHHHHHHHHhCCCCCeEEEE
Confidence 3688899999999999999875
No 379
>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn
Probab=21.98 E-value=39 Score=30.78 Aligned_cols=21 Identities=10% Similarity=0.033 Sum_probs=18.6
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+.+|+.+|+.+.|+|+|++.
T Consensus 69 ~~~~E~~~l~~l~h~~ii~~~ 89 (364)
T cd07875 69 RAYRELVLMKCVNHKNIIGLL 89 (364)
T ss_pred HHHHHHHHHHhcCCCCccccc
Confidence 567899999999999999975
No 380
>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1. Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding
Probab=21.97 E-value=40 Score=29.59 Aligned_cols=21 Identities=10% Similarity=-0.102 Sum_probs=18.6
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+..|+++++.+.|+|+|++.
T Consensus 63 ~~~~e~~~l~~~~h~~v~~~~ 83 (296)
T cd06654 63 LIINEILVMRENKNPNIVNYL 83 (296)
T ss_pred HHHHHHHHHHhCCCCCEeeEE
Confidence 467799999999999999986
No 381
>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1. Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an
Probab=21.80 E-value=45 Score=30.69 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=19.0
Q ss_pred chhhhhhhccCCCCCcccceec
Q psy3210 248 YWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 248 yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
+.+|+.+|+.+.|+|||++...
T Consensus 90 ~~~e~~i~~~~~hp~iv~~~~~ 111 (371)
T cd05622 90 FWEERDIMAFANSPWVVQLFYA 111 (371)
T ss_pred HHHHHHHHHhCCCCCCCeEEEE
Confidence 5678999999999999998743
No 382
>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica
Probab=21.77 E-value=43 Score=30.36 Aligned_cols=22 Identities=14% Similarity=-0.049 Sum_probs=18.8
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+..|+++|+.+.|+|||++..
T Consensus 47 ~~~~E~~il~~l~h~~iv~~~~ 68 (364)
T cd05599 47 HVRAERDILAEADNPWVVKLYY 68 (364)
T ss_pred HHHHHHHHHHhCCCCCCcceEE
Confidence 3557999999999999999864
No 383
>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein. It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....
Probab=21.74 E-value=37 Score=20.72 Aligned_cols=13 Identities=8% Similarity=-0.148 Sum_probs=7.3
Q ss_pred CCceecCcCCcch
Q psy3210 21 LRPLCSQACYLAC 33 (272)
Q Consensus 21 ~qg~~c~~c~~~~ 33 (272)
.|-|+|..||--|
T Consensus 4 ~~~YkC~~CGniV 16 (36)
T PF06397_consen 4 GEFYKCEHCGNIV 16 (36)
T ss_dssp TEEEE-TTT--EE
T ss_pred ccEEEccCCCCEE
Confidence 4669999997554
No 384
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=21.73 E-value=49 Score=31.95 Aligned_cols=26 Identities=12% Similarity=0.101 Sum_probs=20.8
Q ss_pred CCceecCcCCcchhcccccCCCCCCCC
Q psy3210 21 LRPLCSQACYLACHKQCIPHTGRCGTG 47 (272)
Q Consensus 21 ~qg~~c~~c~~~~h~~c~~~~~~C~~~ 47 (272)
+-.|+|..||...+ ++...++.|+.=
T Consensus 5 ~~~y~C~~Cg~~~~-~~~g~Cp~C~~w 30 (454)
T TIGR00416 5 KSKFVCQHCGADSP-KWQGKCPACHAW 30 (454)
T ss_pred CCeEECCcCCCCCc-cccEECcCCCCc
Confidence 34699999998876 578889999753
No 385
>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors. Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,
Probab=21.65 E-value=37 Score=29.46 Aligned_cols=21 Identities=5% Similarity=-0.023 Sum_probs=18.2
Q ss_pred cchhhhhhhccC-CCCCcccce
Q psy3210 247 LYWGNFRLLSSL-FIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l-~h~~~v~~~ 267 (272)
.+..|+++|+++ .|+|+|++.
T Consensus 61 ~~~~E~~~l~~l~~h~~i~~~~ 82 (293)
T cd05053 61 DLVSEMEMMKMIGKHKNIINLL 82 (293)
T ss_pred HHHHHHHHHHhhcCCCCeeeEE
Confidence 367799999999 899999875
No 386
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=21.59 E-value=45 Score=31.33 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=18.8
Q ss_pred eecCcCCcchhcccccCCCCCCCC
Q psy3210 24 LCSQACYLACHKQCIPHTGRCGTG 47 (272)
Q Consensus 24 ~~c~~c~~~~h~~c~~~~~~C~~~ 47 (272)
|+|..||.... ++++.++.|+.=
T Consensus 1 ~~c~~cg~~~~-~~~g~cp~c~~w 23 (372)
T cd01121 1 YVCSECGYVSP-KWLGKCPECGEW 23 (372)
T ss_pred CCCCCCCCCCC-CccEECcCCCCc
Confidence 89999998765 578888999753
No 387
>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase. Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of
Probab=21.58 E-value=43 Score=28.86 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=19.4
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++|++++|+|+|++..
T Consensus 38 ~~~~~e~~~l~~l~~~~i~~~~~ 60 (277)
T cd05577 38 QMALNEKKILEKVSSRFIVSLAY 60 (277)
T ss_pred HHHHHHHHHHHhCCCCCEeeeee
Confidence 34677999999999999999864
No 388
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=21.48 E-value=50 Score=21.49 Aligned_cols=23 Identities=13% Similarity=0.193 Sum_probs=18.8
Q ss_pred ccCCCceecCcCCcchhcccccC
Q psy3210 18 SRGLRPLCSQACYLACHKQCIPH 40 (272)
Q Consensus 18 g~~~qg~~c~~c~~~~h~~c~~~ 40 (272)
|++...+.|..||..+...|...
T Consensus 13 ~~~~rk~~Cr~Cg~~~C~~C~~~ 35 (57)
T cd00065 13 TLTRRRHHCRNCGRIFCSKCSSN 35 (57)
T ss_pred cCCccccccCcCcCCcChHHcCC
Confidence 45778899999999999988543
No 389
>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3. Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated
Probab=21.45 E-value=44 Score=28.49 Aligned_cols=23 Identities=9% Similarity=-0.151 Sum_probs=19.5
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
.+.+|+.+++.+.|+|++++..+
T Consensus 52 ~~~~e~~~~~~l~h~~ii~~~~~ 74 (267)
T cd06645 52 VVQQEIIMMKDCKHSNIVAYFGS 74 (267)
T ss_pred HHHHHHHHHHhCCCCCeeeEEEE
Confidence 45678999999999999998753
No 390
>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun
Probab=21.43 E-value=42 Score=29.26 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=19.1
Q ss_pred cchhhhhhhccCCCCCccccee
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
.+.+|+.+++.+.|+|||++.-
T Consensus 62 ~~~~e~~~l~~~~h~~vv~~~~ 83 (285)
T cd06648 62 LLFNEVVIMRDYQHPNIVEMYS 83 (285)
T ss_pred HHHHHHHHHHHcCCCChheEEE
Confidence 3678999999999999999863
No 391
>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2. Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin
Probab=21.26 E-value=42 Score=29.66 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=18.6
Q ss_pred cchhhhhhhccCCCCCcccce
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~ 267 (272)
.+.+|+++++.+.|+|++++.
T Consensus 61 ~~~~e~~~l~~l~h~~i~~~~ 81 (308)
T cd06634 61 DIIKEVRFLQKLRHPNTIQYR 81 (308)
T ss_pred HHHHHHHHHHhCCCCCcccEE
Confidence 467899999999999999875
No 392
>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3. Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati
Probab=21.23 E-value=40 Score=28.51 Aligned_cols=23 Identities=13% Similarity=-0.120 Sum_probs=19.5
Q ss_pred ccchhhhhhhccCCCCCccccee
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
..+..|+++++.+.|+|+|++.-
T Consensus 43 ~~~~~e~~~l~~l~h~~i~~~~~ 65 (255)
T cd08219 43 EDSRKEAVLLAKMKHPNIVAFKE 65 (255)
T ss_pred HHHHHHHHHHHhCCCCCcceEEE
Confidence 35677899999999999999864
No 393
>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1. Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops
Probab=20.96 E-value=42 Score=28.26 Aligned_cols=23 Identities=22% Similarity=-0.013 Sum_probs=19.7
Q ss_pred cchhhhhhhccCCCCCcccceec
Q psy3210 247 LYWGNFRLLSSLFIVPPVRLSWS 269 (272)
Q Consensus 247 ~yVeE~~~mk~l~h~~~v~~~~~ 269 (272)
.+..|+++++++.|+|++++...
T Consensus 48 ~~~~e~~~l~~~~h~~i~~~~~~ 70 (258)
T cd06632 48 QLEQEIALLSKLQHPNIVQYLGT 70 (258)
T ss_pred HHHHHHHHHHhcCCCCchheeee
Confidence 46789999999999999998743
No 394
>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases. Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the
Probab=20.89 E-value=34 Score=29.30 Aligned_cols=25 Identities=20% Similarity=-0.021 Sum_probs=21.1
Q ss_pred eeccchhhhhhhccCCCCCccccee
Q psy3210 244 FFQLYWGNFRLLSSLFIVPPVRLSW 268 (272)
Q Consensus 244 fP~~yVeE~~~mk~l~h~~~v~~~~ 268 (272)
++..+..|+++++++.|+|++++.-
T Consensus 41 ~~~~~~~e~~~l~~~~~~~i~~~~~ 65 (282)
T cd07829 41 IPSTALREISLLKELKHPNIVKLLD 65 (282)
T ss_pred ccHHHHHHHHHHHhcCCCCHHHHHh
Confidence 4566788999999999999999763
No 395
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.89 E-value=60 Score=31.11 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=20.8
Q ss_pred CceecCcCCcchhcccccCCCCCCC
Q psy3210 22 RPLCSQACYLACHKQCIPHTGRCGT 46 (272)
Q Consensus 22 qg~~c~~c~~~~h~~c~~~~~~C~~ 46 (272)
--|.|..||+ .|.++++.++.|+.
T Consensus 6 t~f~C~~CG~-~s~KW~GkCp~Cg~ 29 (456)
T COG1066 6 TAFVCQECGY-VSPKWLGKCPACGA 29 (456)
T ss_pred cEEEcccCCC-CCccccccCCCCCC
Confidence 4599999986 68999999999984
No 396
>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase. Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou
Probab=20.88 E-value=39 Score=29.28 Aligned_cols=22 Identities=9% Similarity=-0.022 Sum_probs=19.3
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+..|+++|+++.|+|++++.
T Consensus 60 ~~~~~e~~~l~~l~~~~i~~~~ 81 (286)
T cd06614 60 ELIINEILIMKDCKHPNIVDYY 81 (286)
T ss_pred HHHHHHHHHHHHCCCCCeeEEE
Confidence 4577899999999999999875
No 397
>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases. Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut
Probab=20.81 E-value=42 Score=28.75 Aligned_cols=22 Identities=14% Similarity=0.071 Sum_probs=19.3
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..|..|+++++++.|+|++++.
T Consensus 51 ~~~~~ei~~l~~l~~~~i~~~~ 72 (284)
T cd05038 51 SDFEREIEILRTLDHENIVKYK 72 (284)
T ss_pred HHHHHHHHHHHhCCCCChheEE
Confidence 3578899999999999999975
No 398
>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin. Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear
Probab=20.25 E-value=73 Score=27.43 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=17.2
Q ss_pred cchhhhhhhccC-CCCCcccce
Q psy3210 247 LYWGNFRLLSSL-FIVPPVRLS 267 (272)
Q Consensus 247 ~yVeE~~~mk~l-~h~~~v~~~ 267 (272)
.+..|+++++++ .|+|+|++.
T Consensus 60 ~~~~e~~~l~~l~~h~~i~~~~ 81 (286)
T cd06638 60 EIEAEYNILKALSDHPNVVKFY 81 (286)
T ss_pred HHHHHHHHHHHHhcCCCeeeee
Confidence 345688999999 699999985
No 399
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=20.15 E-value=65 Score=26.12 Aligned_cols=24 Identities=21% Similarity=0.499 Sum_probs=16.2
Q ss_pred ceecCcCCcchhccc---ccCCCCCCC
Q psy3210 23 PLCSQACYLACHKQC---IPHTGRCGT 46 (272)
Q Consensus 23 g~~c~~c~~~~h~~c---~~~~~~C~~ 46 (272)
-|+|..||..+|-.= |..++.|+.
T Consensus 112 ~l~C~~Cg~~~~~~~~~~l~~Cp~C~~ 138 (146)
T PF07295_consen 112 TLVCENCGHEVELTHPERLPPCPKCGH 138 (146)
T ss_pred eEecccCCCEEEecCCCcCCCCCCCCC
Confidence 389999998887554 444555554
No 400
>smart00219 TyrKc Tyrosine kinase, catalytic domain. Phosphotransferases. Tyrosine-specific kinase subfamily.
Probab=20.02 E-value=42 Score=28.20 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=19.4
Q ss_pred ccchhhhhhhccCCCCCcccce
Q psy3210 246 QLYWGNFRLLSSLFIVPPVRLS 267 (272)
Q Consensus 246 ~~yVeE~~~mk~l~h~~~v~~~ 267 (272)
..+..|+.+++.+.|+|+|++.
T Consensus 46 ~~~~~e~~~l~~l~~~~i~~~~ 67 (258)
T smart00219 46 EEFLREARIMRKLDHPNIVKLL 67 (258)
T ss_pred HHHHHHHHHHHhcCCCchheEE
Confidence 4677899999999999999976
Done!