RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3210
(272 letters)
>2dlz_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 105 bits (264), Expect = 6e-29
Identities = 39/116 (33%), Positives = 68/116 (58%), Gaps = 9/116 (7%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKV 139
+ + + Y WF G M R++ +LL+ A GTYL+R RP +A+S+K +++V
Sbjct: 8 SREIDYTAYPWFAGNMERQQTDNLLKSHASGTYLIRERP---AEAER--FAISIKFNDEV 62
Query: 140 KHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
KH+KV EK D +++++ F S++EL+ Y+ +SL E+F L+ L+ P+
Sbjct: 63 KHIKVVEK--DN--WIHITEAKKFDSLLELVEYYQCHSLKESFKQLDTTLKYPYSG 114
>2iug_A Phosphatidylinositol 3-kinase regulatory alpha subunit;
transferase, polymorphism, UBL conjugation,
phosphorylation, SH2, PI3K, SH2 domain; 1.89A {Homo
sapiens} PDB: 2iuh_A* 2iui_A* 1fu5_A* 1fu6_A 1oo3_A
1oo4_A* 2pna_A 2pnb_A
Length = 120
Score = 105 bits (264), Expect = 6e-29
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKV 139
++ +L W+ G++ RE+ L ADGT+L+R + Y L+L+
Sbjct: 3 NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDA----STKMHGDYTLTLRKGGNN 58
Query: 140 KHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
K +K++ + DG +Y S F S+VELI Y SL + L+V+L P +
Sbjct: 59 KLIKIFHR--DG--KYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSK 110
>2crh_A VAV proto-oncogene; oncoprotein, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} PDB: 2ror_A* 2lct_A*
Length = 138
Score = 105 bits (265), Expect = 7e-29
Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 10/133 (7%)
Query: 64 GAAQPLGGNEWTAKSW-ADHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPT 122
G++ G E W ++LS +LW+ G M R A S+L +DGT+L+R R
Sbjct: 1 GSSGSSGKAEAEQNWWEGPPQDLSVHLWYAGPMERAGAESILANRSDGTFLVRQRV---K 57
Query: 123 HPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENF 182
E +A+S+K + +VKH+K+ E Y +++ + FR + EL+ Y++NSL + F
Sbjct: 58 DAAE--FAISIKYNVEVKHIKIMTAE----GLYRITEKKAFRGLTELVEFYQQNSLKDCF 111
Query: 183 IGLNVRLQLPFRQ 195
L+ LQ PF++
Sbjct: 112 KSLDTTLQFPFKE 124
>1h9o_A Phosphatidylinositol 3-kinase; transferase/receptor, complex
(phosphotransferase/receptor), phosphotransferase, SH2
domain; HET: PTR; 1.79A {Homo sapiens} SCOP: d.93.1.1
PDB: 1pic_A* 1bfi_A 1bfj_A 1qad_A
Length = 112
Score = 100 bits (252), Expect = 4e-27
Identities = 34/113 (30%), Positives = 51/113 (45%), Gaps = 9/113 (7%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
+ E W VG R KA +LL + DGT+L+R + YA S+ D +VKH
Sbjct: 5 PHHDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES----SKQGC--YACSVVVDGEVKHC 58
Query: 143 KVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
+ + G F + S+ EL+ Y+ SL+++ LNV L P
Sbjct: 59 VINKTA-TG--YGFAEPYNLYSSLKELVLHYQHTSLVQHNDSLNVTLAYPVYA 108
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 100 bits (249), Expect = 6e-25
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 9/135 (6%)
Query: 61 DIAGAAQPLGGNEWTAKSWADHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQG 120
+ G + + E W+VG++ R +A +L + DGT+L+R
Sbjct: 167 EWLGIKNETEDQYSLMEDEDALPHHEERTWYVGKINRTQAEEMLSGKRDGTFLIRES--- 223
Query: 121 PTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIE 180
+ YA S+ D KH +Y G F + S+ EL+ Y+ SL++
Sbjct: 224 -SQRGC--YACSVVVDGDTKHCVIYRTA-TG--FGFAEPYNLYGSLKELVLHYQHASLVQ 277
Query: 181 NFIGLNVRLQLPFRQ 195
+ L V L P R
Sbjct: 278 HNDALTVTLAHPVRA 292
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5-
triphosphate, wortmannin, H1047R, ATP-binding, disease
mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB:
3hiz_B 2rd0_B 4a55_B* 3mtt_A
Length = 373
Score = 97.2 bits (241), Expect = 2e-23
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 8/116 (6%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKV 139
++ +L W+ G++ RE+ L ADGT+L+R + Y L+L+
Sbjct: 2 NNNMSLQNAEWYWGDISREEVNEKLRDTADGTFLVRDA----STKMHGDYTLTLRKGGNN 57
Query: 140 KHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
K +K++ + DG +Y S F S+VELI Y SL + L+V+L P +
Sbjct: 58 KLIKIFHR--DG--KYGFSDPLTFSSVVELINHYRNESLAQYNPKLDVKLLYPVSK 109
Score = 71.8 bits (175), Expect = 1e-14
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 85 LSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKV 144
E W VG R KA +LL + DGT+L+R + YA S+ D +VKH +
Sbjct: 298 HDEKTWNVGSSNRNKAENLLRGKRDGTFLVRES------SKQGCYACSVVVDGEVKHCVI 351
Query: 145 YEKEMDGVPQYFLSQSRYFRSIVEL 169
+ G F + S+ EL
Sbjct: 352 NKTA-TG--YGFAEPYNLYSSLKEL 373
>2eob_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2;
SH2, phosphoinositide phospholipase C, PLC-gamma-2,
phospholipase C-gamma-2; NMR {Rattus norvegicus}
Length = 124
Score = 83.1 bits (206), Expect = 3e-20
Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 16/111 (14%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKH 141
W+ + R +A +L R DG +L+R R + YA++ + KVKH
Sbjct: 14 NPHESKPWYYDRLSRGEAEDMLMRIPRDGAFLIRKREGTDS------YAITFRARGKVKH 67
Query: 142 MKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
++ + L S YF S+VEL+ YE+++L +RL+ P
Sbjct: 68 CRINRDGR----HFVLGTSAYFESLVELVSYYEKHAL-----YRKMRLRYP 109
>2ecd_A Tyrosine-protein kinase ABL2; SH2 domain, phosphotyrosine binding
domain, protein tyrosine kinase, signal transduction,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 81.9 bits (203), Expect = 5e-20
Identities = 24/110 (21%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
+L ++ W+ G + R A LL +G++L+R + P + ++SL+ + +V H
Sbjct: 11 NSLEKHSWYHGPVSRSAAEYLLSSLINGSFLVRES---ESSPGQ--LSISLRYEGRVYHY 65
Query: 143 KVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
++ DG + +++ F ++ EL+ + + GL L P
Sbjct: 66 RIN-TTADG--KVYVTAESRFSTLAELVHHHSTVAD-----GLVTTLHYP 107
>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2,
signal transduction, adapter molecule, signaling
protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A
2eyw_A
Length = 230
Score = 81.9 bits (201), Expect = 9e-19
Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 29/187 (15%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKV 139
+ ++ W+ G + R++A +LL+ + G +L+R P Y LS+ + +V
Sbjct: 5 GNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGD-----YVLSVSENSRV 59
Query: 140 KHMKVYEKE-------------MDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLN 186
H + P + F S+ L+ Y+ + L +
Sbjct: 60 SHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEP 119
Query: 187 VRLQLPFR--------QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKI- 237
V A FDF + LP K+G + + K E WW +
Sbjct: 120 VSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEE--QWWNAEDS 177
Query: 238 DERVSYF 244
+ +
Sbjct: 178 EGKRGMI 184
>2eo6_A B-cell linker protein; SH2, cytoplasmic adapter protein, B-cell
adapter containing SH2 domain protein; NMR {Mus
musculus}
Length = 141
Score = 79.1 bits (195), Expect = 1e-18
Identities = 30/121 (24%), Positives = 53/121 (43%), Gaps = 14/121 (11%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKH 141
L W+ G R+ A L R DG++L+R H ++ Y L +++V +
Sbjct: 18 AELLGKPWYAGACDRKSAEEALHRSNKDGSFLIRKSS---GHDSKQPYTLVAFFNKRVYN 74
Query: 142 MKVYEKEMDGVPQYFLSQ----SRYFRSIVELICCYERNSLI----ENFIGLNVRLQLPF 193
+ V E QY L + YF S+VE++ ++ N L+ +N + RL+
Sbjct: 75 IPVRFIEATK--QYALGKKKNGEEYFGSVVEIVNSHQHNPLVLIDSQNNTKDSTRLKYAV 132
Query: 194 R 194
+
Sbjct: 133 K 133
>3tkz_A Tyrosine-protein phosphatase non-receptor type 11; SH2 domain,
protein protein interactions, PTR residues, HYDR peptide
complex; HET: PTR; 1.80A {Homo sapiens} PDB: 3tl0_A*
1aya_A* 1ayb_A* 1ayc_A* 1ayd_A
Length = 109
Score = 77.7 bits (192), Expect = 2e-18
Identities = 24/114 (21%), Positives = 47/114 (41%), Gaps = 11/114 (9%)
Query: 84 NLSEYLWFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
+++ WF + +A +LL DG++L R ++P + + LS++ + V H+
Sbjct: 3 HMTSRRWFHPNITGVEAENLLLTRGVDGSFLARPSK---SNPGD--FTLSVRRNGAVTHI 57
Query: 143 KVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENF-IGLNVRLQLPFRQ 195
K+ Y L F ++ EL+ Y + G + L+ P
Sbjct: 58 KIQNTG----DYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNC 107
>2ge9_A Tyrosine-protein kinase BTK; SH2 domain, structure, transferase;
NMR {Homo sapiens}
Length = 125
Score = 78.1 bits (193), Expect = 2e-18
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 21/120 (17%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTDE---- 137
+++ Y W+ M R +A LL++E +G +++R + + Y +S+
Sbjct: 6 DSIEMYEWYSKHMTRSQAEQLLKQEGKEGGFIVRDS----SKAGK--YTVSVFAKSTGDP 59
Query: 138 --KVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
++H V QY+L++ F +I ELI ++ NS GL RL+ P Q
Sbjct: 60 QGVIRHYVVCSTP-QS--QYYLAEKHLFSTIPELINYHQHNSA-----GLISRLKYPVSQ 111
>3us4_A Megakaryocyte-associated tyrosine-protein kinase; SH2 domain,
signaling protein, structural genomics, joint CE
structural genomics, JCSG; 1.50A {Homo sapiens} PDB:
1jwo_A
Length = 98
Score = 76.8 bits (190), Expect = 2e-18
Identities = 24/108 (22%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 85 LSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKV 144
LS WF G++ ++A L+ DG +L+R HP + Y L + V H +V
Sbjct: 2 LSLMPWFHGKISGQEAVQQLQPPEDGLFLVRES---ARHPGD--YVLCVSFGRDVIHYRV 56
Query: 145 YEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ DG + ++ +F ++++++ Y ++ + +L P
Sbjct: 57 LHR--DG--HLTIDEAVFFCNLMDMVEHYSKDKG-----AICTKLVRP 95
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 110
Score = 76.9 bits (190), Expect = 4e-18
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 21/118 (17%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTDE---- 137
L +Y WF G + R ++ LL ++ +G +++R + Y +SL +
Sbjct: 6 SGLDDYDWFAGNISRSQSEQLLRQKGKEGAFMVRNS----SQVGM--YTVSLFSKAVNDK 59
Query: 138 --KVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPF 193
VKH V+ + + +L+++ F SI +LI ++ NS G+ RL+ P
Sbjct: 60 KGTVKHYHVHTNA-EN--KLYLAENYCFDSIPKLIHYHQHNSA-----GMITRLRHPV 109
>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction
adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1
d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A
Length = 217
Score = 79.7 bits (196), Expect = 4e-18
Identities = 41/172 (23%), Positives = 71/172 (41%), Gaps = 13/172 (7%)
Query: 79 WADHENLSEYLWFVGEMGREKATSLLERE-ADGTYLLRIRPQGPTHPNETIYALSLKTDE 137
++ + + WF G++ R KA +L ++ DG +L+R P ++LS+K
Sbjct: 49 PKNYIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGD-----FSLSVKFGN 103
Query: 138 KVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQII 197
V+H KV + F S+ EL+ + S+ N ++ +Q
Sbjct: 104 DVQHFKVLRDG----AGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPT 159
Query: 198 -AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLY 248
A FDF P E +L ++G + V+ WWKG + F + Y
Sbjct: 160 YVQALFDFDPQEDGELGFRRGDFIHVMDNSDP--NWWKGACHGQTGMFPRNY 209
Score = 51.6 bits (123), Expect = 4e-08
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLY 248
A+A++DF T ++L K+G + VL++E +Q W+K +++ + + + Y
Sbjct: 3 AIAKYDFKATADDELSFKRGDILKVLNEECDQ-NWYKAELNGKDGFIPKNY 52
>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene
homolog (avian)- signaling protein; NMR {Homo sapiens}
PDB: 2lqw_A*
Length = 303
Score = 80.8 bits (198), Expect = 6e-18
Identities = 30/181 (16%), Positives = 60/181 (33%), Gaps = 26/181 (14%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKV 139
A ++ W++G + R++A + L+ + G +L+R P Y LS+ + +V
Sbjct: 4 ARFDSSDRSAWYMGPVSRQEAQTRLQGQRHGMFLVRDSSTCPGD-----YVLSVSENSRV 58
Query: 140 KHMKVYEKEMDGVPQYFLSQSRYFRSIVELI---------------CCYERNSLIENFIG 184
H + + F + F + L+ S +
Sbjct: 59 SHYIINSLP----NRRFKIGDQEFDHLPALLEFYKIHYLDTTTLIEPAPRYPSPPMGSVS 114
Query: 185 LNVRLQLPFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+DF +A LP K+G ++++ K E WW + +
Sbjct: 115 APNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEE--QWWSARNKDGRVGM 172
Query: 245 F 245
Sbjct: 173 I 173
Score = 40.0 bits (92), Expect = 4e-04
Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 188 RLQLPFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
Q A+ + C + L L+ G V V G W+G+++ R F
Sbjct: 232 STQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNIN--GQWEGEVNGRKGLF 286
>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.01A {Caenorhabditis elegans}
Length = 174
Score = 77.9 bits (191), Expect = 7e-18
Identities = 35/165 (21%), Positives = 65/165 (39%), Gaps = 19/165 (11%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLL--EREADGTYLLRIRPQGPTHPNETIYALSLKTDE 137
+ ++ M RE+A LL + + GT+L+R + P E Y+L+++ +
Sbjct: 4 NGFDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS----SRPGE--YSLTVREAD 57
Query: 138 K---VKHMKVY---EKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQL 191
+ V H + KE ++ F I L+ ++ L E +
Sbjct: 58 EGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEAS---LLAAYK 114
Query: 192 PFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+ V F F LP +QG ++ +LSK + WW+ +
Sbjct: 115 KPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQ--DWWEAR 157
>3k2m_A Proto-oncogene tyrosine-protein kinase ABL1; engineered binding
protein, antibody mimic, protein-protein SH2 domain,
ATP-binding, phosphoprotein; 1.75A {Homo sapiens} PDB:
3uyo_A 3t04_A 1ab2_A
Length = 112
Score = 75.7 bits (187), Expect = 1e-17
Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 13/109 (11%)
Query: 84 NLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMK 143
+L ++ W+ G + R A LL +G++L+R + P + ++SL+ + +V H +
Sbjct: 1 SLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRES---ESSPGQ--RSISLRYEGRVYHYR 55
Query: 144 VYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ DG + ++S F ++ EL+ + + GL L P
Sbjct: 56 INTAS-DG--KLYVSSESRFNTLAELVHHHSTVAD-----GLITTLHYP 96
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced,
ATP-binding, cell membrane, cytoplasm, membrane,
nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens}
PDB: 3eac_A
Length = 106
Score = 75.7 bits (187), Expect = 1e-17
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 84 NLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMK 143
LS WF G++ RE+A LL G +L+R +P + Y L + +D KV+H +
Sbjct: 4 KLSLMPWFHGKITREQAERLLYPPETGLFLVRES---TNYPGD--YTLCVSSDGKVEHYR 58
Query: 144 VYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ + + + YF ++++L+ Y ++ GL RL P
Sbjct: 59 IMYH--AS--KLSIDEEVYFENLMQLVEHYTSDAD-----GLCTRLIKP 98
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 125
Score = 75.0 bits (185), Expect = 3e-17
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 33/138 (23%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTDE---- 137
NL Y W+ + R +A LL +E+ +G +++R H Y +S+
Sbjct: 11 TNLEIYEWYHRNITRNQAEHLLRQESKEGAFIVRDS----RHLGS--YTISVFMGARRST 64
Query: 138 --KVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
+KH ++ + + G Q+++++ F+SI ELI ++ N+ GL RL+ P
Sbjct: 65 EAAIKHYQIKKND-SG--QWYVAERHAFQSIPELIWYHQHNAA-----GLMTRLRYP--- 113
Query: 196 IIAVAEFDFCPTEANQLP 213
+ P
Sbjct: 114 ---------VGLMGSSGP 122
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6
(PTK6/BRK), SRC homology 2(S domain, solution structure,
backbone dynamics, transferase; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 100
Score = 74.1 bits (183), Expect = 3e-17
Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 15/105 (14%)
Query: 90 WFVGEMGREKATSLLERE--ADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEK 147
WF G + R +A L+ E A G +L+R+ + Y LS++ + V+H K++ +
Sbjct: 4 WFFGCISRSEAVRRLQAEGNATGAFLIRVSE---KPSAD--YVLSVRDTQAVRHYKIWRR 58
Query: 148 EMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
G + L+++ F S+ EL+ + SL +RL P
Sbjct: 59 A-GG--RLHLNEAVSFLSLPELVNYHRAQSL-----SHGLRLAAP 95
>3gqi_B Phospholipase C-gamma-1; phosphorylated kinase, PY-recognition,
tandem SH2 domains, A analog, ATP-binding,
craniosynostosis, disease mutation; HET: PTR DVT ACP;
2.50A {Rattus norvegicus} PDB: 2fci_A* 2pld_A* 2ple_A*
Length = 226
Score = 77.3 bits (190), Expect = 3e-17
Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 82 HENLSEYLWFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTDEKVK 140
W+ + R +A +L R DG +L+R R PN YA+S + + K+K
Sbjct: 116 TNAHESKEWYHASLTRAQAEHMLMRVPRDGAFLVRKR----NEPNS--YAISFRAEGKIK 169
Query: 141 HMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
H +V + +G Q + + F S+V+LI YE++ L ++L+ P +
Sbjct: 170 HCRVQQ---EG--QTVMLGNSEFDSLVDLISYYEKHPL-----YRKMKLRYPINE 214
Score = 61.1 bits (148), Expect = 3e-11
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 16/98 (16%)
Query: 90 WFVGEM-----GREKATSLLEREA------DGTYLLRIRPQGPTHPNETIYALSLKTDEK 138
WF G++ GR A LL DG++L+R + T + Y LS + K
Sbjct: 6 WFHGKLGAGRDGRHIAERLLTEYCIETGAPDGSFLVR---ESETFVGD--YTLSFWRNGK 60
Query: 139 VKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERN 176
V+H +++ ++ G P++FL+ + F S+ +LI Y++
Sbjct: 61 VQHCRIHSRQDAGTPKFFLTDNLVFDSLYDLITHYQQV 98
>2vif_A Suppressor of cytokine signalling 6; growth regulation, signal
transduction inhibitor, KIT regula phosphotyrosine,
signaling protein; HET: PTR; 1.45A {Homo sapiens}
Length = 141
Score = 75.2 bits (185), Expect = 4e-17
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 12/116 (10%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKV 139
+ + L++ W+ G + R +A L DG++L+R + +LS ++ K
Sbjct: 16 EELKKLAKQGWYWGPITRWEAEGKLANVPDGSFLVRDSSDDR-----YLLSLSFRSHGKT 70
Query: 140 KHMKVYEKEMDGVPQYFLSQS---RYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
H ++ +G ++ + SIV+LI +S F RL
Sbjct: 71 LHTRIEHS--NG--RFSFYEQPDVEGHTSIVDLIEHSIGDSENGAFCYSRSRLPGS 122
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 121
Score = 74.2 bits (183), Expect = 5e-17
Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 15/115 (13%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLLEREA--DGTYLLRIRPQGPTHPNETIYALSLKTDE 137
A+ +L WF G + R A L G +L+R + + + ++LS+ +
Sbjct: 8 AEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIR---ESESQKGD--FSLSVLDEG 62
Query: 138 KVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
VKH ++ + G +FL++ + F ++ E + Y S GL V+L+ P
Sbjct: 63 VVKHYRIRRLDEGG---FFLTRRKVFSTLNEFVNYYTTTSD-----GLCVKLEKP 109
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide
binding protein; HET: PTR; 1.80A {Mus musculus} SCOP:
d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Length = 100
Score = 73.8 bits (182), Expect = 5e-17
Identities = 20/102 (19%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKV 139
++ WF + R +A +LL + G +++R + P + +++S++ ++ V
Sbjct: 1 GSFIDIEFPEWFHEGLSRHQAENLLMGKDIGFFIIRAS---QSSPGD--FSISVRHEDDV 55
Query: 140 KHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIEN 181
+H KV G + + F S+ +L+ Y S+ +
Sbjct: 56 QHFKVMRDT-KG---NYFLWTEKFPSLNKLVDYYRTTSISKQ 93
>2oq1_A Tyrosine-protein kinase ZAP-70; tandem SH2 domains, ZAP-70,
tyrosine kinase, transferase; HET: PTR; 1.90A {Homo
sapiens} SCOP: d.93.1.1 d.93.1.1 PDB: 1m61_A
Length = 254
Score = 77.2 bits (190), Expect = 6e-17
Identities = 30/166 (18%), Positives = 55/166 (33%), Gaps = 16/166 (9%)
Query: 29 CYLACHKQCIPHTGRCGTGVPLPAMSPRPPLMDIAGAAQPLGGNEWTAKSWADHENLSEY 88
C + P C + + ++ Q + +
Sbjct: 100 CNRPSGLEPQPGVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHERM 159
Query: 89 LWFVGEMGREKATSLLEREA--DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYE 146
W+ + RE+A L A DG +LLR R YALSL + V H +
Sbjct: 160 PWYHSSLTREEAERKLYSGAQTDGKFLLRPR----KEQGT--YALSLIYGKTVYHYLIS- 212
Query: 147 KEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
++ G +Y + + F ++ +L+ + + GL L+
Sbjct: 213 QDKAG--KYCIPEGTKFDTLWQLVEYLKLKA-----DGLIYCLKEA 251
Score = 69.2 bits (169), Expect = 5e-14
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 10/95 (10%)
Query: 85 LSEYLWFVGEMGREKATSLLEREA--DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
+ +F G + R +A L+ DG +LLR Q Y LSL D + H
Sbjct: 3 AAHLPFFYGSISRAEAEEHLKLAGMADGLFLLR---QCLRSLGG--YVLSLVHDVRFHHF 57
Query: 143 KVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNS 177
+ E++++G Y ++ + EL Y R+
Sbjct: 58 PI-ERQLNG--TYAIAGGKAHCGPAELCEFYSRDP 89
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 77.2 bits (189), Expect = 1e-16
Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 20/172 (11%)
Query: 82 HENLSEYLWFVGEMGREKATSLL--EREADGTYLLRIRPQGPTHPNETIYALSLKTDEK- 138
+ ++ M RE+A LL + + GT+L+R + P E Y+L+++ ++
Sbjct: 35 FDPFEWRSFYFPGMSREEAHKLLGEPQVSIGTFLMRDS----SRPGE--YSLTVREADEG 88
Query: 139 --VKHMKVY--EKEMDGVPQ-YFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPF 193
V H + E + DG ++ F I L+ ++ L E + +
Sbjct: 89 NAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYK---KP 145
Query: 194 RQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDE-RVSYF 244
+ V F F LP +QG ++ +LSK + WW+ +
Sbjct: 146 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQ--DWWEARNALGTTGLV 195
Score = 40.2 bits (93), Expect = 4e-04
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 192 PFRQIIAVAEFDFCPT--EANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
P A FD P + QL +K+G V+V K G +K ++D ++
Sbjct: 244 PRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSN--GMYKAELDGQIGSV 296
>2cia_A Cytoplasmic protein NCK2; SH2-domain, SH3 domain, phosphorylation,
binding specificity; HET: PTR MPD; 1.45A {Homo sapiens}
PDB: 1z3k_A 2ci9_A* 2ci8_A*
Length = 102
Score = 72.3 bits (178), Expect = 2e-16
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 11/106 (10%)
Query: 90 WFVGEMGREKATSLL-EREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148
W+ G + R +A L ER +G +L+R + P++ +++SLK K KH KV +
Sbjct: 7 WYYGNVTRHQAECALNERGVEGDFLIR---DSESSPSD--FSVSLKASGKNKHFKV--QL 59
Query: 149 MDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFR 194
+D Y + Q R F ++ EL+ Y++ + + G + L +
Sbjct: 60 VDN--VYCIGQ-RRFHTMDELVEHYKKAPIFTSEHGEKLYLVRALQ 102
>2gsb_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator,
P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 119
Score = 72.7 bits (179), Expect = 2e-16
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 15/109 (13%)
Query: 85 LSEYLWFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMK 143
+WF G++ +++A +LL ++L+R P + Y+L +T+E ++ K
Sbjct: 13 HEGKIWFHGKISKQEAYNLLMTVGQVCSFLVRPSD---NTPGD--YSLYFRTNENIQRFK 67
Query: 144 VYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ + F+ RY+ SI ++I Y + I L+ P
Sbjct: 68 ICPTP-NN---QFMMGGRYYNSIGDIIDHYRKEQ-----IVEGYYLKEP 107
>2dx0_A Phospholipase C, gamma 2; phosphoric diester hydrolase, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 2.50A {Mus musculus}
Length = 138
Score = 73.0 bits (179), Expect = 2e-16
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 14/117 (11%)
Query: 83 ENLSEYLWFVGEM-GREKATSLLEREA------DGTYLLRIRPQGPTHPNETIYALSLKT 135
E WF ++ R A LL+ DGT+L+R T PN+ Y LS
Sbjct: 17 ELHFGEKWFHKKVESRTSAEKLLQEYCAETGAKDGTFLVRESE---TFPND--YTLSFWR 71
Query: 136 DEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+V+H ++ +GV +Y+L+ + F SI LI Y L +RL P
Sbjct: 72 SGRVQHCRIRSTMENGVMKYYLTDNLTFNSIYALIQHYREAHLRCA--EFELRLTDP 126
>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3,
signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A
2l3q_A 2ggr_A
Length = 304
Score = 75.4 bits (184), Expect = 5e-16
Identities = 34/187 (18%), Positives = 63/187 (33%), Gaps = 29/187 (15%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKV 139
+ ++ W+ G + R++A +LL+ + G +L+R P Y LS+ + +V
Sbjct: 3 GNFDSEERSSWYWGRLSRQEAVALLQGQRHGVFLVRDSSTSPGD-----YVLSVSENSRV 57
Query: 140 KHMKVYEKEM-------------DGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLN 186
H + P + F S+ L+ Y+ + L +
Sbjct: 58 SHYIINSSGPRPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDTTTLIEP 117
Query: 187 VRLQLPFR--------QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKI- 237
V A FDF + LP K+G + + K E WW +
Sbjct: 118 VSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEE--QWWNAEDS 175
Query: 238 DERVSYF 244
+ +
Sbjct: 176 EGKRGMI 182
Score = 44.2 bits (103), Expect = 2e-05
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 2/65 (3%)
Query: 180 ENFIGLNVRLQLPFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDE 239
+ LQ + + + L L+ G V V G W+G+ +
Sbjct: 224 PSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVS--GQWEGECNG 281
Query: 240 RVSYF 244
+ +F
Sbjct: 282 KRGHF 286
>3ov1_A Growth factor receptor-bound protein 2; GRB2 SH2 domain,
phosphotyrosine binding, signaling protein, signaling
protein-antagonist complex; HET: PTR; 1.60A {Homo
sapiens} PDB: 3imj_A* 3in7_A* 3imd_A* 3kfj_A* 3n8m_A*
3in8_A* 3s8l_A* 3s8n_A* 3s8o_A* 2huy_A* 2h5k_A* 2huw_A*
2h46_E* 3c7i_A* 3n84_A* 1fhs_A 1bm2_A* 1bmb_A* 3ove_A*
1fyr_A* ...
Length = 117
Score = 71.2 bits (175), Expect = 6e-16
Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 85 LSEYLWFVGEMGREKATSLL-EREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMK 143
+ + WF G++ R KA +L ++ DG +L+R + P + ++LS+K V+H K
Sbjct: 3 MKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESE---SAPGD--FSLSVKFGNDVQHFK 57
Query: 144 VYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
V G + F S+ EL+ + S + N ++ L
Sbjct: 58 VLRDG-AG---KYFLWVVKFNSLNELVDYHRSTS-----VSRNQQIFLR 97
>1mil_A SHC adaptor protein; SH2 domain, phosphorylation, collagen, growth
regulation, transforming protein, alternative
initiation; 2.70A {Homo sapiens} SCOP: d.93.1.1 PDB:
1tce_A*
Length = 104
Score = 70.4 bits (173), Expect = 8e-16
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 12/110 (10%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
L WF G++ R +A +LL+ +G +L+R + T P + Y L+ + KH+
Sbjct: 2 SQLRGEPWFHGKLSRREAEALLQL--NGDFLVR---ESTTTPGQ--YVLTGLQSGQPKHL 54
Query: 143 KVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ + E ++ F S+ LI + N L G + LQ P
Sbjct: 55 LLVDPE-----GVVRTKDHRFESVSHLISYHMDNHLPIISAGSELCLQQP 99
>2cs0_A Hematopoietic SH2 domain containing; ALX, FLJ14886, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
d.93.1.1
Length = 119
Score = 70.4 bits (173), Expect = 1e-15
Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 12/118 (10%)
Query: 75 TAKSWADHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLK 134
+ S WF G + RE A +LLE + G++L+R+ Y LS K
Sbjct: 3 SGSSGGQLAQDGVPEWFHGAISREDAENLLESQPLGSFLIRVSHSHVG------YTLSYK 56
Query: 135 TDEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
H V + DG + S+ L+ +++ + L P
Sbjct: 57 AQSSCCHFMVKLLD-DGT-FMIPGEKVAHTSLDALVTFHQQKPI----EPRRELLTQP 108
>2izv_A Suppressor of cytokine signaling 4; signal transduction inhibitor,
growth regulation, signal transduction, SH2 domain,
nuclear protein; 2.55A {Homo sapiens} SCOP: a.271.1.1
d.93.1.1
Length = 187
Score = 71.8 bits (176), Expect = 2e-15
Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKV 139
D ++ + G M + A +LLE + +GT+LLR Q ++++S + +
Sbjct: 26 PDLLQINNNPCYWGVMDKYAAEALLEGKPEGTFLLRDSAQED-----YLFSVSFRRYSRS 80
Query: 140 KHMKVYEKEMDGVPQYFLSQSR----YFRSIVELICCYERNSL 178
H ++ + + + + I L+ Y+ S
Sbjct: 81 LHARIEQW--NH--NFSFDAHDPCVFHSPDITGLLEHYKDPSA 119
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS
proline, domain swapped dimer, SH transferase; HET: CIT;
2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A
1lum_A 1lun_A 2k79_B 2k7a_B
Length = 118
Score = 68.9 bits (169), Expect = 4e-15
Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 19/120 (15%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTDEK 138
NL Y W+ + R+KA LL +G +++R P Y +S+ T
Sbjct: 1 GSPNNLETYEWYNKSISRDKAEKLLLDTGKEGAFMVRDS----RTPGT--YTVSVFTKAI 54
Query: 139 ------VKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+KH + E D +Y++++ F SI LI ++ N GL RL+ P
Sbjct: 55 ISENPCIKHYHIKETN-DSPKRYYVAEKYVFDSIPLLIQYHQYNGG-----GLVTRLRYP 108
>2c9w_A Suppressor of cytokine signaling 2; growth regulation, SH2 domain,
signal transduction inhibitor nuclear protein; 1.9A
{Homo sapiens} SCOP: a.271.1.1 d.93.1.1
Length = 169
Score = 70.2 bits (172), Expect = 4e-15
Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 15/123 (12%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
L + W+ G M +A L+ +GT+L+R + +S+KT ++
Sbjct: 12 RELGQTGWYWGSMTVNEAKEKLKEAPEGTFLIRDSSHSD-----YLLTISVKTSAGPTNL 66
Query: 143 KVYEKE---MDGVPQYFLSQSRYFRSIVELICCYERNSLIENFI-------GLNVRLQLP 192
++ ++ S+ + F S+V LI Y + + +++ L P
Sbjct: 67 RIEYQDGKFRLDSIICVKSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKP 126
Query: 193 FRQ 195
Sbjct: 127 LYT 129
>1jyr_A Growth factor receptor-bound protein 2; receptor binding,
regulatory, inhibitor, signaling protein-I complex; HET:
PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A*
1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E*
1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Length = 96
Score = 68.0 bits (167), Expect = 5e-15
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 90 WFVGEMGREKATSLLERE-ADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148
WF G++ R KA +L ++ DG +L+R + P + ++LS+K V+H KV
Sbjct: 5 WFFGKIPRAKAEEMLSKQRHDGAFLIRESE---SAPGD--FSLSVKFGNDVQHFKVLRDG 59
Query: 149 MDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQL 191
G + F S+ EL+ + S + N ++ L
Sbjct: 60 -AG---KYFLWVVKFNSLNELVDYHRSTS-----VSRNQQIFL 93
>2hdv_A SH2-B PH domain containing signaling mediator 1 gamma isoform;
adapter protein, signaling protein; 2.00A {Mus musculus}
PDB: 2hdx_A* 1rpy_A 1rqq_C*
Length = 111
Score = 68.5 bits (168), Expect = 6e-15
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLL---EREADGTYLLRIRPQGPTHPNETIYALSLKTD 136
+ LS Y WF G + R KA L+ + G +L+R Q T E L+
Sbjct: 1 GSDQPLSGYPWFHGMLSRLKAAQLVLEGGTGSHGVFLVR---QSETRRGE--CVLTFNFQ 55
Query: 137 EKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIG-LNVRLQLP 192
K KH+++ G Q +F+SI +++ + + + G +V L
Sbjct: 56 GKAKHLRLSLNA-AG---QCRVQHLHFQSIFDMLEHFRVHPIPLESGGSSDVVLVSY 108
>2eo3_A CRK-like protein; phosphorylation, repeat, SH2 domain, SH3 domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 111
Score = 68.1 bits (167), Expect = 7e-15
Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 85 LSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKV 144
W++G + R++A + L+ + G +L+R T P + Y LS+ + +V H +
Sbjct: 16 SDRSAWYMGPVSRQEAQTRLQGQRHGMFLVR---DSSTCPGD--YVLSVSENSRVSHYII 70
Query: 145 YEKEMDGVPQYFLSQSRYFRSIVELICCYERNSL 178
+ ++ + + F + L+ Y+ + L
Sbjct: 71 NSLP-NR--RFKIGD-QEFDHLPALLEFYKIHYL 100
>2kno_A Tensin-like C1 domain-containing phosphatase; SH2 domain, TENC1,
solution structure, cell junctio membrane, hydrolase,
membrane, metal-binding; NMR {Homo sapiens} PDB: 2l6k_A
Length = 131
Score = 68.4 bits (167), Expect = 8e-15
Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 26/126 (20%)
Query: 84 NLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKT-------- 135
+ + W+ + R++A +LL+ + G +L+R + Y L+LK
Sbjct: 16 SDTSKFWYKPHLSRDQAIALLKDKDPGAFLIR---DSHSFQGA--YGLALKVATPPPSAQ 70
Query: 136 -------DEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVR 188
++ V+H + E GV YF S+ L+ + + + L
Sbjct: 71 PWKGDPVEQLVRHFLI-ETGPKGVKIKGCPSEPYFGSLSALVSQHSISPI-----SLPCC 124
Query: 189 LQLPFR 194
L++P +
Sbjct: 125 LRIPSK 130
>2hmh_A Suppressor of cytokine signaling 3; SOCS3, GP130, PTyr, peptide
complex, cytokine regulator; HET: PTR; 2.00A {Mus
musculus}
Length = 152
Score = 68.8 bits (168), Expect = 1e-14
Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 10/124 (8%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKV 139
L E ++ + +A LL E GT+L+R + LS+KT
Sbjct: 26 NAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQR-----HFFTLSVKTQSGT 80
Query: 140 KHMKVYEKE----MDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
K++++ + + P F +++L+ Y + +
Sbjct: 81 KNLRIQXEGGSFSLQSDP-RSTQPVPRFDXVLKLVHHYMPPQALPGSTPKRAYYIYSGGE 139
Query: 196 IIAV 199
I +
Sbjct: 140 KIPL 143
>1a81_A SYK kinase; complex (transferase-peptide), SYK, kinase, SH2 domain;
HET: PTR; 3.00A {Homo sapiens} SCOP: d.93.1.1 d.93.1.1
PDB: 1csy_A* 1csz_A*
Length = 254
Score = 70.3 bits (172), Expect = 2e-14
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 16/109 (14%)
Query: 90 WFVGEMGREKATSLLEREA--DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEK 147
WF G++ RE++ ++ + +G +L+R R + YAL L + KV H ++ +
Sbjct: 160 WFHGKISREESEQIVLIGSKTNGKFLIRAR----DNNGS--YALCLLHEGKVLHYRIDKD 213
Query: 148 EMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQI 196
+ G + + + + F ++ +L+ Y + GL L +P ++I
Sbjct: 214 K-TG--KLSIPEGKKFDTLWQLVEHYSYKAD-----GLLRVLTVPCQKI 254
Score = 66.9 bits (163), Expect = 3e-13
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 90 WFVGEMGREKATSLLERE--ADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEK 147
+F G + RE+A L + +DG YLLR Q + +ALS+ K H + E+
Sbjct: 7 FFFGNITREEAEDYLVQGGMSDGLYLLR---QSRNYLGG--FALSVAHGRKAHHYTI-ER 60
Query: 148 EMDGVPQYFLSQSRYFRSIVELICCYERNS 177
E++G Y ++ R S +L + + S
Sbjct: 61 ELNG--TYAIAGGRTHASPADLCHYHSQES 88
>1nrv_A Growth factor receptor-bound protein 10; dimer, signaling protein;
1.65A {Homo sapiens} SCOP: d.93.1.1 PDB: 3m7f_A
Length = 105
Score = 65.7 bits (161), Expect = 4e-14
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 90 WFVGEMGREKATSLLEREA--DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEK 147
WF G + RE++ +++++ DG +LLR ++P + L+L +K+K+ ++
Sbjct: 7 WFHGRISREESHRIIKQQGLVDGLFLLRDSQ---SNPKA--FVLTLCHHQKIKNFQILPC 61
Query: 148 EMDGVPQYFLSQSR-YFRSIVELICCYERNSLIENFIGLNVRLQLP 192
E DG + L F +++L+ Y+ N L +L+
Sbjct: 62 EDDGQTFFSLDDGNTKFSDLIQLVDFYQLNKG-----VLPCKLKHH 102
>3pqz_A Growth factor receptor-bound protein 7; SH2, binds phosphotyrosine,
tyrosine kinases, cytoplasmic, P binding; 2.41A {Homo
sapiens} PDB: 1mw4_A* 2l4k_A* 2qms_A
Length = 117
Score = 65.8 bits (161), Expect = 7e-14
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 90 WFVGEMGREKATSLLEREA--DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEK 147
WF G + RE++ L+ ++ DG +L+R + +P + LSL +KVKH +
Sbjct: 16 WFHGRISREESQRLIGQQGLVDGLFLVR---ESQRNPQG--FVLSLCHLQKVKHYLILPS 70
Query: 148 EMDGVPQYFLSQSR-YFRSIVELICCYERNSLIENFIGLNVRLQLPFRQI 196
E +G + + + F +++L+ ++ N L L+ ++
Sbjct: 71 EEEGRLYFSMDDGQTRFTDLLQLVEFHQLNRG-----ILPCLLRHCCTRV 115
>1ju5_A CRK; CRK, SH2, SH3, adaptor protein, phosphopeptide, protein
binding/transferase complex; HET: PTR; NMR {Homo
sapiens} SCOP: d.93.1.1
Length = 109
Score = 65.2 bits (159), Expect = 8e-14
Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 24/119 (20%)
Query: 90 WFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVY---- 145
W+ G + R++A +LL+ + G +L+R T P + Y LS+ + +V H +
Sbjct: 2 WYWGRLSRQEAVALLQGQRHGVFLVRDS---STSPGD--YVLSVSENSRVSHYIINSSGP 56
Query: 146 ---------EKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
+ P + F S+ L+ Y+ + L L P +
Sbjct: 57 RPPVPPSPAQPPPGVSPSRLRIGDQEFDSLPALLEFYKIHYLDT------TTLIEPVSR 109
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine
kinase, signal transduction, peptide recognition,
signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1
PDB: 1d1z_A 1d4w_A* 1m27_A*
Length = 104
Score = 64.6 bits (158), Expect = 1e-13
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 13/111 (11%)
Query: 85 LSEYLWFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMK 143
+ + G++ RE LL DG+YLLR + P Y L + + +
Sbjct: 1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSE---SVPGV--YCLCVLYHGYIYTYR 55
Query: 144 VYEKEMDG--VPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
V + E RYFR I LI +++ G+ + LQ P
Sbjct: 56 VSQTETGSWSAETAPGVHKRYFRKIKNLISAFQKPDQ-----GIVIPLQYP 101
>2bbu_A Suppressor of cytokine signaling 3; SH2 domain, extended SH2
subdomain, PEST motif, protein complex, cytokine
regulator; HET: PTR; NMR {Mus musculus}
Length = 164
Score = 66.2 bits (161), Expect = 1e-13
Identities = 20/117 (17%), Positives = 40/117 (34%), Gaps = 10/117 (8%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
L E ++ + +A LL E GT+L+R + LS+KT K++
Sbjct: 18 RKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQR-----HFFTLSVKTQSGTKNL 72
Query: 143 KVYEKE----MDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
++ + + P F +++L+ Y +F +
Sbjct: 73 RIQCEGGSFSLQSDP-RSTQPVPRFDCVLKLVHHYMPPPGTPSFSLPPTEPSSEVPE 128
>2ysx_A Signaling inositol polyphosphate phosphatase SHIP II; SH2 domain,
phosphotyrosine binding domain, protein tyrosine kinase,
signal transduction; NMR {Homo sapiens}
Length = 119
Score = 64.6 bits (158), Expect = 1e-13
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 13/106 (12%)
Query: 90 WFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148
W G + R KA LL R DG++L+R + YAL + V ++ E
Sbjct: 12 WNHGNITRSKAEELLSRTGKDGSFLVRASE---SISRA--YALCVLYRNCVYTYRILPNE 66
Query: 149 MDG--VPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
D V R+F + +LI Y++ ++ GL LQ P
Sbjct: 67 DDKFTVQASEGVSMRFFTKLDQLIEFYKKENM-----GLVTHLQYP 107
>1ka6_A SH2 domain protein 1A; SH2 domain, protein-peptide complex, immune
system; HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB:
1ka7_A
Length = 128
Score = 64.7 bits (158), Expect = 2e-13
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 13/111 (11%)
Query: 85 LSEYLWFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMK 143
+ + G++ RE LL DG+YLLR + P Y L + + +
Sbjct: 1 MDAVAVYHGKISRETGEKLLLATGLDGSYLLRDSE---SVPGV--YCLCVLYHGYIYTYR 55
Query: 144 VYEKEMDG--VPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
V + E RYFR I LI +++ G+ + LQ P
Sbjct: 56 VSQTETGSWSAETAPGVHKRYFRKIKNLISAFQKPDQ-----GIVIPLQYP 101
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain,
feline sarcoma oncogene, structural genomics; NMR {Homo
sapiens} PDB: 2dcr_A
Length = 114
Score = 64.3 bits (157), Expect = 2e-13
Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 13/96 (13%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
+ L E LW+ G + R + LL G +L+R Y LS+ D +H
Sbjct: 11 KPLHEQLWYHGAIPRAEVAELLVH--SGDFLVRESQGKQE------YVLSVLWDGLPRHF 62
Query: 143 KVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSL 178
+ + +D Y L + F SI LI
Sbjct: 63 II--QSLDN--LYRL-EGEGFPSIPLLIDHLLSTQQ 93
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal
transduction lymphocyte, signaling protein; HET: PTR;
2.15A {Mus musculus} SCOP: d.93.1.1
Length = 103
Score = 63.1 bits (154), Expect = 4e-13
Identities = 19/110 (17%), Positives = 43/110 (39%), Gaps = 13/110 (11%)
Query: 87 EYLWFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVY 145
+ ++ G + + + +LL + DG +L+R + P L + + V +++
Sbjct: 2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSE---SVPGA--LCLCVSFKKLVYSYRIF 56
Query: 146 EKEMDG--VPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPF 193
++ + + F ++ EL+ Y + GL V L P
Sbjct: 57 REKHGYYRIETDAHTPRTIFPNLQELVSKYGKPGQ-----GLVVHLSNPI 101
>1aot_F FYN protein-tyrosine kinase; SH2 domain, signal transduction,
peptide complex, complex (proto-oncogene/early protein);
HET: PTR; NMR {Homo sapiens} SCOP: d.93.1.1 PDB: 1aou_F*
Length = 106
Score = 63.4 bits (155), Expect = 4e-13
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 20/116 (17%)
Query: 84 NLSEYLWFVGEMGREKATSLLEREA--DGTYLLRIRPQGPTHPNETIYALSLKT-----D 136
++ W+ G++GR+ A L GT+L+R T Y+LS++
Sbjct: 1 SIQAEEWYFGKLGRKDAERQLLSFGNPRGTFLIRESE---TTKGA--YSLSIRDWDDMKG 55
Query: 137 EKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ VKH K+ + + G Y+++ F ++ +L+ Y + GL+ RL +P
Sbjct: 56 DHVKHYKIRKLDNGG---YYITTRAQFETLQQLVQHYSERAA-----GLSSRLVVP 103
>2kk6_A Proto-oncogene tyrosine-protein kinase FER; methods development,
SH2, NESG, ATP-binding, cytoplasm, nucleotide-binding,
nucleus, phosphoprotein; NMR {Homo sapiens}
Length = 116
Score = 63.5 bits (155), Expect = 4e-13
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKV 139
+ + L+E W+ G + R +A LL++ G +L+R + P E Y LS+ +D +
Sbjct: 9 SHMKPLAEQDWYHGAIPRIEAQELLKK--QGDFLVR---ESHGKPGE--YVLSVYSDGQR 61
Query: 140 KHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLI 179
+H + + Y F +I +LI + +
Sbjct: 62 RHFIIQYVDN----MYRFEG-TGFSNIPQLIDHHYTTKQV 96
>2aug_A Growth factor receptor-bound protein 14; phosphorylation, SH2
domain, signaling protein; 2.30A {Homo sapiens}
Length = 126
Score = 63.9 bits (156), Expect = 4e-13
Identities = 25/106 (23%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 90 WFVGEMGREKATSLLEREA--DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEK 147
WF ++ R++A L+ ++ DG +L+R ++P + LS+ +K+KH ++
Sbjct: 28 WFHHKISRDEAQRLIIQQGLVDGVFLVRDSQ---SNPKT--FVLSMSHGQKIKHFQIIPV 82
Query: 148 EMDGVPQYFLSQSR-YFRSIVELICCYERNSLIENFIGLNVRLQLP 192
E DG + L F +++L+ Y+ N L +L+
Sbjct: 83 EDDGEMFHTLDDGHTRFTDLIQLVEFYQLNKG-----VLPCKLKHY 123
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK,
signal transduction, SH2, SH3, SRC homology, tyrosine
kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1
d.93.1.1 d.144.1.7 PDB: 1jeg_A
Length = 450
Score = 67.0 bits (164), Expect = 7e-13
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 25/161 (15%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
LS WF G++ RE+A LL G +L+R + +P + Y L + + KV+H
Sbjct: 75 TKLSLMPWFHGKITREQAERLLYPPETGLFLVR---ESTNYPGD--YTLCVSCEGKVEHY 129
Query: 143 KVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQIIAVAEF 202
++ + + + YF ++++L+ Y ++ GL RL P VA
Sbjct: 130 RI--MYHAS--KLSIDEEVYFENLMQLVEHYTTDAD-----GLCTRLIKPKVMEGTVAAQ 180
Query: 203 DFCPTEANQLPLKQGCQVIVLSK---EGE----QKGWWKGK 236
D L +K+ + L + +GE G ++G
Sbjct: 181 DEFYRSGWALNMKE----LKLLQTIGKGEFGDVMLGDYRGN 217
Score = 35.8 bits (83), Expect = 0.012
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+A+++F T LP +G + +++ + W+K K
Sbjct: 13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVT-KDPNWYKAK 51
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES,
fujinami, avian sarcoma, viral, feline virus, SGC; HET:
STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Length = 377
Score = 65.7 bits (161), Expect = 2e-12
Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 18/110 (16%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
+ L E LW+ G + R + LL G +L+R E Y LS+ D +H
Sbjct: 8 KPLHEQLWYHGAIPRAEVAELLVH--SGDFLVRES----QGKQE--YVLSVLWDGLPRHF 59
Query: 143 KVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
+ + + + F SI LI L + +
Sbjct: 60 IIQSLD-----NLYRLEGEGFPSIPLLIDHLLSTQQ-----PLTKKSGVV 99
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1;
transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Length = 495
Score = 65.9 bits (161), Expect = 2e-12
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 13/110 (11%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHM 142
+L ++ W+ G + R A LL +G++L+R + P + ++SL+ + +V H
Sbjct: 100 NSLEKHSWYHGPVSRNAAEYLLSSGINGSFLVRES---ESSPGQ--RSISLRYEGRVYHY 154
Query: 143 KVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
++ ++S F ++ EL+ + + GL L P
Sbjct: 155 RINTASDGK---LYVSSESRFNTLAELVHHHSTVAD-----GLITTLHYP 196
Score = 35.9 bits (83), Expect = 0.011
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSY 243
+ VA +DF + N L + +G ++ VL W + + +
Sbjct: 45 LFVALYDFVASGDNTLSITKGEKLRVLGYN-HNGEWCEAQTKNGQGW 90
>1blj_A P55 BLK protein tyrosine kinase; signal transduction, transferase,
phosphotransferase, phosphorylation; NMR {Mus musculus}
SCOP: d.93.1.1 PDB: 1blk_A
Length = 114
Score = 61.2 bits (149), Expect = 3e-12
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 19/116 (16%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREA--DGTYLLRIRPQGPTHPNETIYALSLKTD---- 136
E L WF + R+ A L G++L+R ++LS+K
Sbjct: 7 ETLEVEKWFFRTISRKDAERQLLAPMNKAGSFLIRESESNKGA-----FSLSVKDITTQG 61
Query: 137 EKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
E VKH K+ + +G Y++S F ++ L+ Y + GL +L LP
Sbjct: 62 EVVKHYKIRSLD-NG--GYYISPRITFPTLQALVQHYSKKGD-----GLCQKLTLP 109
>3maz_A Signal-transducing adaptor protein 1; modular domain,
phosphotyrosine, specificity, cytoplasm, phosphoprotein,
SH2 domain, signaling protein; HET: PTR; 1.90A {Homo
sapiens}
Length = 125
Score = 61.0 bits (148), Expect = 4e-12
Identities = 14/92 (15%), Positives = 39/92 (42%), Gaps = 12/92 (13%)
Query: 90 WFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTD---EKVKHMKVY 145
+ R++AT +L++ G + +RP + Y+++++ + ++KH KV
Sbjct: 17 ACFYTVSRKEATEMLQKNPSLGNMI--LRPG--SDSRN--YSITIRQEIDIPRIKHYKV- 69
Query: 146 EKEMDGVPQYFLSQSRYFRSIVELICCYERNS 177
+ L + ++ +I + + +
Sbjct: 70 -MSVGQNYTIELEKPVTLPNLFSVIDYFVKET 100
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2,
autoinhibition, ITAM, hydrogen bonding network, TCR
signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Length = 613
Score = 65.0 bits (158), Expect = 5e-12
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 15/115 (13%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREA--DGTYLLRIRPQGPTHPNETIYALSLKTDEKVK 140
+ + +F G + R +A L+ DG +LLR Q Y LSL D +
Sbjct: 3 DPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLR---QCLRSLGG--YVLSLVHDVRFH 57
Query: 141 HMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQ 195
H + E++++G Y ++ + EL Y R+ GL L+ P +
Sbjct: 58 HFPI-ERQLNG--TYAIAGGKAHCGPAELCEFYSRDPD-----GLPCNLRKPCNR 104
Score = 58.0 bits (140), Expect = 8e-10
Identities = 27/155 (17%), Positives = 49/155 (31%), Gaps = 11/155 (7%)
Query: 18 SRGLRPLCSQACYLACHKQCIPHTGRCGTGVPLPAMSPRPPLMDIAGAAQPLGGNEWTAK 77
GL + C + P C + + ++ Q + +
Sbjct: 91 PDGLPCNLRKPCNRPSGLEPQPGVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVE 150
Query: 78 SWADHENLSEYLWFVGEMGREKATSLLERE--ADGTYLLRIRPQGPTHPNETIYALSLKT 135
W+ + RE+A L DG +LLR R YALSL
Sbjct: 151 KLIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPR----KEQGT--YALSLIY 204
Query: 136 DEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELI 170
+ V H + + + Y + + F ++ +L+
Sbjct: 205 GKTVYHYLISQDKAGK---YCIPEGTKFDTLWQLV 236
>1lkk_A Human P56 tyrosine kinase; complex (tyrosine kinase/peptide); HET:
PTR; 1.00A {Homo sapiens} SCOP: d.93.1.1 PDB: 1lcj_A*
1bhf_A* 1bhh_A 1lkl_A* 1bhh_B 1fbz_A* 1ijr_A* 1cwd_L*
1cwe_A*
Length = 105
Score = 60.0 bits (146), Expect = 5e-12
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 20/115 (17%)
Query: 85 LSEYLWFVGEMGREKATSLLEREA--DGTYLLRIRPQGPTHPNETIYALSLKTDEK---- 138
L WF + R+ A L G++L+R + ++LS++ ++
Sbjct: 1 LEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRES---ESTAGS--FSLSVRDFDQNQGE 55
Query: 139 -VKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
VKH K+ + +G +++S F + EL+ Y S GL RL P
Sbjct: 56 VVKHYKIRNLD-NG--GFYISPRITFPGLHELVRHYTNASD-----GLCTRLSRP 102
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex,
DOWN-regulated kinase, ordered activation loop; HET: PTR
PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1
d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A*
3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Length = 454
Score = 54.3 bits (131), Expect = 1e-08
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 16/116 (13%)
Query: 83 ENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKT-----DE 137
++L WF + R+ A L + IR T Y+LS++ +
Sbjct: 65 DSLETEEWFFKGISRKDAERQLLAPGNMLGSFMIRD-SETTKGS--YSLSVRDYDPRQGD 121
Query: 138 KVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPF 193
VKH K+ + G +++S F ++ EL+ Y++ + GL +L +P
Sbjct: 122 TVKHYKIRTLDNGG---FYISPRSTFSTLQELVDHYKKGND-----GLCQKLSVPC 169
Score = 37.0 bits (86), Expect = 0.005
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 195 QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+II VA +D+ L ++G Q++VL + GE WWK +
Sbjct: 8 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE---WWKAR 46
>2cr4_A 3BP-2, SH3 domain-binding protein 2; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 126
Score = 51.3 bits (122), Expect = 1e-08
Identities = 19/110 (17%), Positives = 44/110 (40%), Gaps = 17/110 (15%)
Query: 90 WFVGEMGREKATSLLEREA------DGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMK 143
FV + L + + DG Y +R + + +T KV++ +
Sbjct: 19 VFVNTTESCEVERLFKATSPRGEPQDGLYCIRNSSTKSGK----VLVVWDETSNKVRNYR 74
Query: 144 VYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPF 193
++EK+ +++L F S+ ++ Y + L + ++ L+ P+
Sbjct: 75 IFEKD----SKFYLEGEVLFVSVGSMVEHYHTHVLPSHQ---SLLLRHPY 117
>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 49.6 bits (119), Expect = 2e-08
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
AVA ++F + +L L++G V + S+ G +GWWKG+ + R+ +F
Sbjct: 10 AVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWF 56
>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding
protein G; sortase, protein ligation, intein, inset,
solubility enhancement; NMR {Mus musculus}
Length = 142
Score = 50.1 bits (119), Expect = 5e-08
Identities = 20/47 (42%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A A +DFC + ++L LK+G + +L+K+G+Q GWW+G+I R+ +F
Sbjct: 8 AKARYDFCARDRSELSLKEGDIIKILNKKGQQ-GWWRGEIYGRIGWF 53
>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3
domain, sturctural genomics, structural genomics; 1.39A
{Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A
2a08_A
Length = 60
Score = 47.5 bits (114), Expect = 6e-08
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
AVA + F E+ LP ++G + +L K Q WW G+++ R F
Sbjct: 6 AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIF 52
>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 85
Score = 47.8 bits (114), Expect = 1e-07
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+A + + L +G + +L + GW G R F
Sbjct: 11 VIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLF 57
>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 47.4 bits (113), Expect = 1e-07
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A + F + L + G ++ V+SK WW+GK+ + F
Sbjct: 20 VTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIF 66
>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 70
Score = 47.3 bits (113), Expect = 1e-07
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
F + ++L +K+G V +++K+ GWW+G+++ R F
Sbjct: 10 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVF 56
>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm,
phosphorylation, SH3-binding, signaling protein; NMR
{Mus musculus} PDB: 2kro_A
Length = 64
Score = 46.8 bits (112), Expect = 1e-07
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
F + T ++L ++G + ++SKE + GWWKG+++ + F
Sbjct: 9 CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVF 55
>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418
protein, SH3MD1, SH3 multiple domains 1, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 46.9 bits (112), Expect = 1e-07
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
V ++ E ++L L+ G V V+ K GWW E +
Sbjct: 11 YVVVSNYKKQENSELSLQAGEVVDVIEKNES--GWWFVSTSEEQGWV 55
>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3
domain, structural genomics center for structural
genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A*
1x27_A*
Length = 175
Score = 49.3 bits (117), Expect = 1e-07
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 84 NLSEYLWFVGEMGREKATSLL--EREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKH 141
+L WF + R+ A L G++L+R + ++ E VKH
Sbjct: 70 SLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKH 129
Query: 142 MKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
K+ + +++S F + EL+ Y S GL RL P
Sbjct: 130 YKIRNLDNG---GFYISPRITFPGLHELVRHYTNASD-----GLCTRLSRP 172
Score = 37.0 bits (85), Expect = 0.003
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 192 PFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
P + + +A + P+ L ++G Q+ +L + GE WWK +
Sbjct: 9 PLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE---WWKAQ 50
>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein;
2.05A {Homo sapiens} PDB: 2k6d_A
Length = 69
Score = 46.5 bits (111), Expect = 2e-07
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
F + ++L +K+G V +++K+ GWW+G+++ R F
Sbjct: 5 CKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVF 51
>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus
musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A
4gbq_A
Length = 74
Score = 46.5 bits (111), Expect = 2e-07
Identities = 14/47 (29%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A+A++DF T ++L K+G + VL++E +Q W+K +++ + +
Sbjct: 12 AIAKYDFKATADDELSFKRGDILKVLNEECDQ-NWYKAELNGKDGFI 57
>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 80
Score = 46.7 bits (111), Expect = 2e-07
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDER 240
IA + + + QL L G +++L K GWW+G++ R
Sbjct: 9 IAQVTSAYVASGSEQLSLAPGQLILILKKNTS--GWWQGELQAR 50
>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor
protein, downregulation, CBL, apoptosis, junction,
cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}
Length = 73
Score = 46.2 bits (110), Expect = 2e-07
Identities = 12/51 (23%), Positives = 26/51 (50%)
Query: 194 RQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+ F + ++L +K+G V +++K+ GWW+G+++ R F
Sbjct: 8 SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVF 58
>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3,
cysteine-rich domain protein, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 46.1 bits (110), Expect = 3e-07
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
VA + F P E L ++ G + +L E WWKGKI +R+ +F
Sbjct: 10 YVALYKFVPQENEDLEMRPGDIITLLEDSNE--DWWKGKIQDRIGFF 54
>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor
protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}
Length = 58
Score = 45.2 bits (108), Expect = 4e-07
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 196 IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+ A+ EFD+ ++L + G + + KE GWW+G+I+ R F
Sbjct: 2 VEAIVEFDYQAQHDDELTISVGEIITNIRKEDG--GWWEGQINGRRGLF 48
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase,
transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.93.1.1 d.144.1.7
Length = 535
Score = 49.9 bits (119), Expect = 4e-07
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 20/117 (17%)
Query: 83 ENLSEYLWFVGEMGREKATSLLER--EADGTYLLRIRPQGPTHPNETIYALSLKTDEK-- 138
+++ W+ G++ R ++ LL GT+L+R T Y LS+ +
Sbjct: 143 DSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRESE---TTKGA--YCLSVSDFDNAK 197
Query: 139 ---VKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
VKH K+ + + G ++++ F S+ +L+ Y +++ GL RL
Sbjct: 198 GLNVKHYKIRKLDSGG---FYITSRTQFNSLQQLVAYYSKHAD-----GLCHRLTTV 246
>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain,
formin-binding protein 2, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 72
Score = 45.4 bits (108), Expect = 4e-07
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 194 RQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
I A+A+FD+ A +L K+G +++ + + WW+G+ +
Sbjct: 8 EPIEAIAKFDYVGRTARELSFKKGASLLLYQRASD--DWWEGRHNGIDGLI 56
>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding,
cell adhesion, cytoskeleton, LIPO magnesium, manganese,
metal-binding, myristate; 1.40A {Homo sapiens} PDB:
3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A
1bbz_A 1awo_A
Length = 63
Score = 45.3 bits (108), Expect = 5e-07
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+ VA +DF + N L + +G ++ VL W + + +
Sbjct: 7 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNG-EWCEAQTKNGQGWV 53
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal
transduction, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens}
Length = 91
Score = 45.9 bits (109), Expect = 5e-07
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+ + F +L ++G + V+ K WWK K
Sbjct: 19 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCK 58
>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo
sapiens}
Length = 69
Score = 45.0 bits (107), Expect = 6e-07
Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 193 FRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGE-QKGWWKGKIDERVSYF 244
++A A +D ++L ++G + VL ++ + GWW + R
Sbjct: 1 HLNVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIV 53
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase,
phosphorylation, SH2, SH3, phosphotyrosine,
proto-oncogene, phosphotransferase; HET: PTR; 1.50A
{Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB:
1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B*
3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A*
3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Length = 452
Score = 49.0 bits (117), Expect = 6e-07
Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 20/120 (16%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLLER--EADGTYLLRIRPQGPTHPNETIYALSLKT-- 135
A +++ W+ G++ R ++ LL GT+L+R T Y LS+
Sbjct: 57 APSDSIQAEEWYFGKITRRESERLLLNAENPRGTFLVRES---ETTKGA--YCLSVSDFD 111
Query: 136 ---DEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLP 192
VKH K+ + + G ++++ F S+ +L+ Y +++ GL RL
Sbjct: 112 NAKGLNVKHYKIRKLDSGG---FYITSRTQFNSLQQLVAYYSKHAD-----GLCHRLTTV 163
Score = 32.4 bits (74), Expect = 0.16
Identities = 8/36 (22%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 199 VAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWK 234
VA +D+ L K+G ++ +++ + WW
Sbjct: 6 VALYDYESRTETDLSFKKGERLQIVNN--TEGDWWL 39
>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR,
CDC42P-interacting, S signaling protein; NMR
{Lodderomyces elongisporus}
Length = 120
Score = 46.5 bits (110), Expect = 7e-07
Identities = 8/48 (16%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 193 FRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDER 240
+ AV ++F ++L + G + + + W+ K R
Sbjct: 1 MAPLFAVTLYEFKAERDDELDVSPGENLSICAHYDY--EWFIAKPINR 46
>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 71
Score = 44.6 bits (106), Expect = 8e-07
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
V + +++ ++G V V+ K E GWW + + +
Sbjct: 11 YVTVQPYTSQSKDEIGFEKGVTVEVIRKNLE--GWWYIRYLGKEGWA 55
>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, signaling protein; NMR {Homo sapiens} SCOP:
b.34.2.1
Length = 69
Score = 44.6 bits (106), Expect = 8e-07
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+A + + E L +G +++V K+G WW G I +R F
Sbjct: 11 YIALYPYSSVEPGDLTFTEGEEILVTQKDG---EWWTGSIGDRSGIF 54
>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2
domain, SH3 zinc-finger, SH3- binding, UBL conjugation
pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A
2krm_A
Length = 62
Score = 44.5 bits (106), Expect = 9e-07
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+ E+D+ ++L ++ G + + K E+ GW +G+++ R F
Sbjct: 4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEE-GWLEGELNGRRGMF 49
>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 79
Score = 44.7 bits (106), Expect = 1e-06
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQ--KGWWKGKIDERVSYF 244
+ A + F N+L + ++ +L + WW +++ + Y
Sbjct: 15 VYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYV 64
>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics,
northeast structural genomics consortiu PSI-2, protein
structure initiative; NMR {Homo sapiens}
Length = 72
Score = 44.2 bits (105), Expect = 1e-06
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A +DF E N+L K G + VL WWKG+ + + F
Sbjct: 20 VRAIYDFEAAEDNELTFKAGEIITVLDDSDP--NWWKGETHQGIGLF 64
>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain,
hormone/growth factor complex; 1.39A {Homo sapiens}
SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A
Length = 108
Score = 45.4 bits (107), Expect = 1e-06
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSK-EGEQKGWWKGKIDERVSYFFQLYWGNF 252
+AVA D+ + L + +G V V SK +G + +W G + G F
Sbjct: 24 MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYF 80
>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin,
C-CBL-associated protein, CAP, SH3 domain protein 5
SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens}
PDB: 2dlm_A
Length = 68
Score = 44.1 bits (105), Expect = 1e-06
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A A+FDF +LPL++G V + + + W++G+ RV F
Sbjct: 10 ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQ--NWYEGEHHGRVGIF 54
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel,
beta sheet, zinc finger, metal binding protein; NMR
{Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Length = 71
Score = 44.2 bits (105), Expect = 1e-06
Identities = 9/40 (22%), Positives = 16/40 (40%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+ + F +L ++G + V+ K WWK K
Sbjct: 8 VVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCK 47
>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 88
Score = 44.8 bits (106), Expect = 1e-06
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A+ + C + L L+ G V V G W+G+++ R F
Sbjct: 21 AIQKRVPCAYDKTALALEVGDIVKVTRMNIN--GQWEGEVNGRKGLF 65
>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2;
STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early
endosome, signaling protein/signaling protein complex;
1.70A {Mus musculus} SCOP: b.34.2.1
Length = 62
Score = 43.7 bits (104), Expect = 1e-06
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A +DF E N+L K G + VL WW+G+ F
Sbjct: 8 VRALYDFEAVEDNELTFKHGELITVLDDSDA--NWWQGENHRGTGLF 52
>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling
protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1
PDB: 1h92_A 1kik_A
Length = 62
Score = 43.8 bits (104), Expect = 1e-06
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 192 PFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
P + + +A + P+ L ++G Q+ +L + GE WWK +
Sbjct: 3 PLQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGE---WWKAQ 44
>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine
kinase, signal transduction, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 44.4 bits (105), Expect = 1e-06
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A +F++ ++L L +G +VIV+ K + GWW+G + +V +F
Sbjct: 20 AYVKFNYMAEREDELSLIKGTKVIVMEKCSD--GWWRGSYNGQVGWF 64
>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein;
NMR {Saccharomyces cerevisiae}
Length = 73
Score = 43.8 bits (104), Expect = 2e-06
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
AVA +DF P N+L L +G V + K G+ GW +
Sbjct: 8 AVALYDFEPENDNELRLAEGDIVFISYKHGQ--GWLVAE 44
>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 68
Score = 43.8 bits (104), Expect = 2e-06
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
VA D+ T+ QL +G ++++L + WW G+ Y
Sbjct: 10 FVAIADYAATDETQLSFLRGEKILILRQTTA--DWWWGERAGCCGYI 54
>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A
{Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A
2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A
2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...
Length = 62
Score = 43.8 bits (104), Expect = 2e-06
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+ +D+ +L +K+G + +L+ K WWK +++ R +
Sbjct: 9 VLVLYDYQEKSPRELTVKKGDILTLLNS--TNKDWWKIEVNGRQGFV 53
>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3
domain, riken structural genomics/proteomics initiative,
RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 76
Score = 43.8 bits (104), Expect = 2e-06
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 194 RQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
Q+I A F+F T ++L + +G + V E GWW+G ++ R +F
Sbjct: 9 HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEG--GWWEGTLNGRTGWF 57
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 44.4 bits (105), Expect = 2e-06
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A + F +++ G + V K + GW G +F
Sbjct: 8 YRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWF 54
>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A
{Saccharomyces cerevisiae}
Length = 59
Score = 43.3 bits (103), Expect = 2e-06
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
AVA +DF P N+L L +G V + K G+ GW +
Sbjct: 4 AVALYDFEPENDNELRLAEGDIVFISYKHGQ--GWLVAE 40
>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 81
Score = 43.9 bits (104), Expect = 2e-06
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A +D+ + +L L + V S G W G+ +
Sbjct: 20 ARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKV 66
>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; HET: MLY; 2.20A {Homo sapiens}
PDB: 2frw_A 2js0_A
Length = 58
Score = 43.3 bits (102), Expect = 2e-06
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 196 IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
I A F + ++L L G +V V+ E GWW+G + ++ +F
Sbjct: 2 IPAFVXFAYVAEREDELSLVXGSRVTVM--EXCSDGWWRGSYNGQIGWF 48
>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural
protein; NMR {Dictyostelium discoideum}
Length = 80
Score = 43.9 bits (104), Expect = 2e-06
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A A D+ ++ + LP K+ + + K+ E W+ G+++ + F
Sbjct: 13 ARALKDYNVSDTSLLPFKRNDIITITFKDQEN-KWFMGQLNGKEGSF 58
>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces
cerevisiae} PDB: 1ynz_A
Length = 58
Score = 42.9 bits (102), Expect = 2e-06
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A + F P + L LK G +V +L K W+KG + R F
Sbjct: 5 VEALYQFDPQQDGDLGLKPGDKVQLLEKLSP--EWYKGSCNGRTGIF 49
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain,
phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Length = 67
Score = 43.4 bits (103), Expect = 2e-06
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
I VA +DF TEA+ L L++G + I+L K WW+ +
Sbjct: 4 IVVAMYDFQATEAHDLRLERGQEYIILEKNDLH--WWRAR 41
>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex,
helix-turn-helix, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: b.34.2.1
Length = 62
Score = 43.0 bits (102), Expect = 3e-06
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A F + T+ L ++G ++VLSK E W +G+ +V F
Sbjct: 8 VEALFSYEATQPEDLEFQEGDIILVLSKVNE--EWLEGESKGKVGIF 52
>2pqh_A Spectrin alpha chain, brain; SH3 domain, chimera, , structural
protein; 1.75A {Gallus gallus}
Length = 80
Score = 43.5 bits (103), Expect = 3e-06
Identities = 10/47 (21%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+A +D+ ++ +K+G + +L+ K WWK ++++R +
Sbjct: 5 VLALYDYQEKSPREVTMKKGDILTLLNS--TNKDWWKVEVNDRQGFV 49
>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.70A {Rattus norvegicus}
Length = 73
Score = 43.4 bits (103), Expect = 3e-06
Identities = 10/47 (21%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+A +D+ ++ +K+G + +L+ K WWK ++++R +
Sbjct: 8 VLALYDYQEKSPREVTMKKGDILTLLNS--TNKDWWKVEVNDRQGFV 52
>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}
Length = 68
Score = 43.0 bits (102), Expect = 3e-06
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+A DF + L K+G ++V+ K+ + GWW K
Sbjct: 13 YIAVGDFTAQQVGDLTFKKGEILLVIEKKPD--GWWIAK 49
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export;
2.5A {Homo sapiens} PDB: 2bzx_A
Length = 67
Score = 43.1 bits (102), Expect = 3e-06
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A+ + C + L L+ G V V G W+G+++ R F
Sbjct: 6 AIQKRVPCAYDKTALALEVGDIVKVTRM--NINGQWEGEVNGRKGLF 50
>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel
beta sheets, structural protein; 2.30A {Gallus gallus}
SCOP: b.34.2.1
Length = 83
Score = 43.5 bits (103), Expect = 3e-06
Identities = 10/48 (20%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+ +A +D+ ++ +K+G + +L+ K WWK ++++R +
Sbjct: 19 LVLALYDYQEKSPREVTMKKGDILTLLNS--TNKDWWKVEVNDRQGFV 64
>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 43.1 bits (102), Expect = 3e-06
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
AVA F + A +L ++G + + + WW+G+ +
Sbjct: 13 AVACFAYTGRTAQELSFRRGDVLRLHER--ASSDWWRGEHNGMRGLI 57
>2vwf_A Growth factor receptor-bound protein 2; polymorphism,
phosphoprotein, golgi apparatus, alternative splicing,
HOST-virus interaction, SH3C, signaling; 1.58A {Homo
sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A
Length = 58
Score = 42.6 bits (101), Expect = 3e-06
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A FDF P E +L ++G + V+ WWKG + F
Sbjct: 5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDP--NWWKGACHGQTGMF 49
>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3
domain/complex, adaptor protein (MONA); 1.5A {Mus
musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A
2d0n_A
Length = 58
Score = 42.5 bits (101), Expect = 3e-06
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A A +DF E ++L + G V VL WW G++ ++ F
Sbjct: 4 ARALYDFEALEEDELGFRSGEVVEVLDSSNP--SWWTGRLHNKLGLF 48
>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling
protein; 1.80A {Mus musculus}
Length = 60
Score = 42.6 bits (101), Expect = 4e-06
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A+A+FD+ A +L K+G +++ + + WW+G+ +
Sbjct: 9 AIAKFDYVGRSARELSFKKGASLLLYHR--ASEDWWEGRHNGIDGLV 53
>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A
{Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A
3sem_A 1k76_A 1kfz_A
Length = 58
Score = 42.5 bits (101), Expect = 4e-06
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A FDF P E+ +L K+G + +++K+ WW+G+++ R F
Sbjct: 5 VQALFDFNPQESGELAFKRGDVITLINKDDP--NWWEGQLNNRRGIF 49
>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal
transducing adaptor molecule, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 43.2 bits (102), Expect = 4e-06
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A +DF E N+L K G +IVL WWKG+ + F
Sbjct: 20 VRALYDFEAVEDNELTFKHGEIIIVLDDSDA--NWWKGENHRGIGLF 64
>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 73
Score = 42.7 bits (101), Expect = 4e-06
Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQ-KGWWKGKIDERVSYF 244
A +D+ ++L +G + +L+KE + G+W+G+ + R+ F
Sbjct: 11 VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVF 58
>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}
Length = 65
Score = 42.6 bits (101), Expect = 4e-06
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A +FDF +L L++G V + + + W +G+ R+ F
Sbjct: 4 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDK--NWLEGEHHGRLGIF 48
>3u23_A CD2-associated protein; structural genomics, structural genomics
consortium, SGC, BE barrel, adaptor protein, protein
binding; 1.11A {Homo sapiens} PDB: 2krn_A
Length = 65
Score = 42.6 bits (101), Expect = 4e-06
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 191 LPFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
L ++ F++ P ++L LK G + + + E GWW G ++ ++ F
Sbjct: 3 LGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEE--GWWSGTLNNKLGLF 54
>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked
agammaglobulinemia, XLA, BTK, SH3 domain, transferase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A
Length = 67
Score = 42.2 bits (100), Expect = 5e-06
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
VA +D+ P AN L L++G + +L + WW+ +
Sbjct: 10 KVVALYDYMPMNANDLQLRKGDEYFILEESNL--PWWRAR 47
>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 80
Score = 42.9 bits (101), Expect = 5e-06
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 199 VAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+ + + +++ G +V VL K+ GWW + E +
Sbjct: 12 MTCSAYQKVQDSEISFPAGVEVQVLEKQES--GWWYVRFGELEGWA 55
>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate
repeat-containing protein, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2kea_A
Length = 73
Score = 42.4 bits (100), Expect = 5e-06
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+F P + + L LK+G + ++SK G W G ++ +V F
Sbjct: 14 VHTDFTPSPYDTDSLKLKKGDIIDIISKPPM--GTWMGLLNNKVGTF 58
>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85,
PIX/COOL, protein-protein interaction, X-RAY,
endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A
Length = 64
Score = 42.2 bits (100), Expect = 5e-06
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 194 RQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
Q++ A+F+F T ++L +G + V E GWW+G + R +F
Sbjct: 5 SQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEG--GWWEGTHNGRTGWF 53
>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Length = 68
Score = 42.2 bits (100), Expect = 5e-06
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
F + P ++L LK G + V+ + E GWW+G ++ + F
Sbjct: 10 CQVAFSYLPQNDDELELKVGDIIEVVGEVEE--GWWEGVLNGKTGMF 54
>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine
kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A
4hck_A 5hck_A
Length = 86
Score = 42.8 bits (101), Expect = 6e-06
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 194 RQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
II VA +D+ L ++G Q++VL + GE WWK +
Sbjct: 24 EDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGE---WWKAR 63
>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 98
Score = 42.8 bits (101), Expect = 7e-06
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+A +D+ ++L +G + V++K+ WW+G+I+ F
Sbjct: 37 VIAMYDYAANNEDELSFSKGQLINVMNKDDP--DWWQGEINGVTGLF 81
>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13,
protein-protein interaction, structural genomics; NMR
{Mus musculus}
Length = 93
Score = 42.9 bits (101), Expect = 7e-06
Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 196 IIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQ--KGWWKGKID 238
++A AE+DF ++ + G + + KE + +GW +D
Sbjct: 18 VVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLD 62
>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide
interaction, signaling protein; HET: NCO; 0.92A {Rattus
norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A
Length = 59
Score = 41.8 bits (99), Expect = 7e-06
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A+F+F T ++L +G + V E GWW+G + R +F
Sbjct: 7 VRAKFNFQQTNEDELSFSKGDVIHVTRVEEG--GWWEGTHNGRTGWF 51
>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR
{Homo sapiens}
Length = 65
Score = 41.8 bits (99), Expect = 7e-06
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
F++ P ++L LK G + + + E GWW G ++ ++ F
Sbjct: 4 CKVLFEYIPQNEDELELKVGDIIDINEEVEE--GWWSGTLNNKLGLF 48
>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human
osteoclast stimulating factor 1, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 41.8 bits (99), Expect = 7e-06
Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A + F P ++L ++G + + WWKG R
Sbjct: 10 FRALYTFEPRTPDELYFEEGDIIYITDMSDT--NWWKGTSKGRTGLI 54
>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 42.0 bits (99), Expect = 8e-06
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
AVA +D+ +++ + + + GWW+G R F
Sbjct: 20 AVALYDYQAAGDDEISFDPDDIITNIEMIDD--GWWRGVCKGRYGLF 64
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR
{Homo sapiens} PDB: 2js2_A
Length = 67
Score = 41.8 bits (99), Expect = 9e-06
Identities = 8/43 (18%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 194 RQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
++I +A++D+ + +L +K+ ++ +L WW+ +
Sbjct: 3 EEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKT---WWRVR 42
>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 68
Score = 41.8 bits (99), Expect = 9e-06
Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
F F P +L + G V VL K + W + +
Sbjct: 10 HRVLFGFVPETKEELQVMPGNIVFVLKKGND--NWATVMFNGQKGLV 54
>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine
nucleotide exchange factor (GEF) 9, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 41.6 bits (98), Expect = 1e-05
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A A +D +L K G + VL K WW G+ID+ +F
Sbjct: 13 AEAVWDHVTMANRELAFKAGDVIKVLDA--SNKDWWWGQIDDEEGWF 57
>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase,
tyrosine-protein kinase LYK, kinase EMT, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 42.0 bits (99), Expect = 1e-05
Identities = 7/43 (16%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 194 RQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+ + +A +D+ + +L L++ + +L WW+ +
Sbjct: 18 EETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIH--WWRVQ 58
>1w1f_A Tyrosine-protein kinase LYN; SH3-domain, SH3 domain, tyrosine
kinase, signal transduction; NMR {Homo sapiens} PDB:
1wa7_A
Length = 65
Score = 41.1 bits (97), Expect = 1e-05
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK--IDERVSYF 244
I VA + + + L K+G ++ VL + GE WWK K + ++ +
Sbjct: 9 IVVALYPYDGIHPDDLSFKKGEKMKVLEEHGE---WWKAKSLLTKKEGFI 55
>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR
{Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A
2k7a_A
Length = 77
Score = 41.6 bits (98), Expect = 1e-05
Identities = 7/43 (16%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 194 RQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+ + +A +D+ + +L L+ + +L + WW+ +
Sbjct: 19 EETLVIALYDYQTNDPQELALRCDEEYYLLDS--SEIHWWRVQ 59
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain,
signaling protein; NMR {Homo sapiens}
Length = 72
Score = 41.5 bits (98), Expect = 1e-05
Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 195 QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+++ VA+FD+ + +L +K+ ++ +L WW+ +
Sbjct: 7 EVVVVAKFDYVAQQEQELDIKKNERLWLLDDSKS---WWRVR 45
>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin
SH3 domain, SPC-S19P20S circular permutant, S protein;
NMR {Synthetic}
Length = 73
Score = 41.2 bits (97), Expect = 1e-05
Identities = 8/47 (17%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A + ++ +K+G + +L+ + WWK ++++R +
Sbjct: 3 APPLPPY-SAGGREVTMKKGDILTLLNSTNK--DWWKVEVNDRQGFV 46
>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine
proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C*
4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A
1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C*
1qwe_A 1qwf_A 1prl_C ...
Length = 84
Score = 41.6 bits (98), Expect = 1e-05
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+ VA +D+ T L +G + +L WW+ +
Sbjct: 8 LFVALYDYNATRWTDLSFHKGEKFQILEFGPG--DWWEAR 45
>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus
musculus}
Length = 60
Score = 40.6 bits (96), Expect = 1e-05
Identities = 7/47 (14%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A + + + ++L + ++ ++ GWW G++ + F
Sbjct: 8 CKALYAYDAQDTDELSFNANDIIDIIKEDPS--GWWTGRLRGKQGLF 52
>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain,
NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens}
SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B
Length = 193
Score = 43.8 bits (103), Expect = 2e-05
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A D+ T +++ L G V V+ K GWW ++ + +
Sbjct: 13 TYRAIADYEKTSGSEMALSTGDVVEVVEKSES--GWWFCQMKAKRGWI 58
Score = 40.0 bits (93), Expect = 3e-04
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
VA + E +++ L +G V V+ K + GWW + D+ YF
Sbjct: 84 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLD--GWWVIRKDDVTGYF 128
>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL,
SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 81
Score = 41.2 bits (97), Expect = 2e-05
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDER 240
+ + + + +L ++G V +L K W++ K
Sbjct: 20 CITKCEHTRPKPGELAFRKGDVVTILEACEN-KSWYRVKHHTS 61
>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction,
hydrolase, protein binding; 1.65A {Mus musculus} PDB:
2d1x_A
Length = 65
Score = 41.1 bits (97), Expect = 2e-05
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A+A +D+ +++ + + + GWW+G R F
Sbjct: 12 AIALYDYQAAGDDEISFDPDDIITNIEMIDD--GWWRGVCKGRYGLF 56
>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel,
endosome, L binding, membrane, phosphoprotein,
proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}
Length = 73
Score = 41.1 bits (97), Expect = 2e-05
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 192 PFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
P Q A +DF P +L ++G + + ++ E W++G + + +F
Sbjct: 10 PLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDE--NWYEGMLHGQSGFF 60
>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR
{Homo sapiens}
Length = 92
Score = 41.7 bits (98), Expect = 2e-05
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
F + P ++L LK G + V+ + E GWW+G ++ + F
Sbjct: 21 CQVAFSYLPQNDDELELKVGDIIEVVGEVEE--GWWEGVLNGKTGMF 65
>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm,
cytoskeleton, SH3 domain, SIG protein; NMR
{Saccharomyces cerevisiae} PDB: 2rqw_A
Length = 108
Score = 42.1 bits (99), Expect = 2e-05
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 192 PFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERV 241
P + A+ +DF +A++L G + + + W+ K R+
Sbjct: 2 PLGSLYAIVLYDFKAEKADELTTYVGENLFICAHHNC--EWFIAKPIGRL 49
>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 79
Score = 41.3 bits (97), Expect = 2e-05
Identities = 9/40 (22%), Positives = 17/40 (42%), Gaps = 3/40 (7%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
D+ + + ++G ++ V+S EG WWK
Sbjct: 19 FLAVLSDYPSPDISPPIFRRGEKLRVISDEGG---WWKAI 55
>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP:
b.34.2.1
Length = 71
Score = 40.7 bits (96), Expect = 2e-05
Identities = 9/41 (21%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID 238
+A+++F T LP +G + +++ + W+K K
Sbjct: 14 CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDP-NWYKAKNK 53
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta
barrel, beta sandwich, signaling protei; 2.25A {Homo
sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Length = 466
Score = 44.6 bits (105), Expect = 2e-05
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 195 QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+ A A +D + +L K G + V+ + WW G++ + +F
Sbjct: 30 VVCAEALWDHVTMDDQELGFKAGDVIEVMDA--TNREWWWGRVADGEGWF 77
>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase;
NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A
Length = 71
Score = 40.7 bits (96), Expect = 2e-05
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 192 PFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFF 245
P + A FD+ ++L + + + K+ GWW+G + +F
Sbjct: 3 PTFKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEG--GWWRGDYGGKKQLWF 54
>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 79
Score = 40.8 bits (96), Expect = 2e-05
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 195 QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+ A + F + ++L L++G VI+ K+ E GWW G ++ + +F
Sbjct: 7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEE--GWWFGSLNGKKGHF 54
>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein;
1.07A {Homo sapiens}
Length = 58
Score = 40.2 bits (95), Expect = 2e-05
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 194 RQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+ + A + F P ++L ++G + + WWKG R
Sbjct: 2 QVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDT--NWWKGTSKGRTGLI 50
>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate
head cDNA, riken FULL-length enriched library,
clone:4831401O22, structural genomics; NMR {Mus
musculus}
Length = 68
Score = 40.3 bits (95), Expect = 3e-05
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A A ++ L +G +++ + E W++G+I+ F
Sbjct: 10 AKALCNYRGKNPGDLKFNKGDVILLRRQLDE--NWYQGEINGVSGIF 54
>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding,
signaling, HCK SH3 domain, PR binding; 3.45A {Homo
sapiens}
Length = 90
Score = 40.8 bits (96), Expect = 3e-05
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 195 QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
II VA +D+ + L ++G Q++VL + GE WWK +
Sbjct: 3 DIIVVALYDYVSWSPDDLSFQKGDQMVVLEESGE---WWKAR 41
>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 69
Score = 40.3 bits (95), Expect = 3e-05
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 195 QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFF 245
A +D+ +++L +G + +SKE GWWKG R+ +F
Sbjct: 7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPG--GWWKGDYGTRIQQYF 55
>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane,
nuclear protein, phosphorylation, polymorphism,
transport, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 40.3 bits (95), Expect = 3e-05
Identities = 10/41 (24%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID 238
A+A+F+F ++ ++G ++ +L + E W++G+I
Sbjct: 10 AIAKFNFNGDTQVEMSFRKGERITLLRQVDE--NWYEGRIP 48
>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13;
compact beta-barrel of five anti-parrallel beta-strands;
2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB:
1n5z_A
Length = 92
Score = 41.0 bits (96), Expect = 3e-05
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 192 PFRQIIAVAEFDFCPTEANQ-LPLKQGCQVIVLSK---EGEQKGWWKGKI-DERVSYF 244
P + A A +DF P + LK+G + +LSK G WWK + + + Y
Sbjct: 11 PSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYI 68
>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, endocytosis/exocytosis complex; NMR {Homo
sapiens} SCOP: b.34.2.1
Length = 74
Score = 40.4 bits (95), Expect = 3e-05
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 192 PFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+ A A + + N L + + VL + Q+ WW G++ +F
Sbjct: 7 GVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQ---QENWWFGEVHGGRGWF 56
>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2,
SH3 domain, TKL kinase, MKN28, structural GEN structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 89
Score = 41.0 bits (96), Expect = 3e-05
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQK---GWWKGKI-DERVSYF 244
A FD+ +L L++G +V VLS++ GWW G++ RV F
Sbjct: 32 WTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVF 82
>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A
{Acanthamoeba} PDB: 2drk_A
Length = 58
Score = 39.8 bits (94), Expect = 3e-05
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 195 QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
I A +D+ ++L K+G +IV K+ GWW+G+++ + +
Sbjct: 3 GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPA--GWWEGELNGKRGWV 50
>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein
2A, endophilin 1, EEN-B1, structural genomics, NPPSFA;
NMR {Homo sapiens} PDB: 2knb_B 3iql_A
Length = 73
Score = 40.3 bits (95), Expect = 3e-05
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 195 QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A +DF P +L K+G + + ++ E W++G + +F
Sbjct: 7 GPCCRALYDFEPENEGELGFKEGDIITLTNQIDE--NWYEGMLHGHSGFF 54
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.3 bits (104), Expect = 3e-05
Identities = 57/318 (17%), Positives = 87/318 (27%), Gaps = 131/318 (41%)
Query: 13 IVTLKSRGLRP--LCSQACYLACHKQCIPHTGRCGTGVPLPAMSPRPPLMDIAGAAQPLG 70
+VT K G P L S TG G+ IA
Sbjct: 250 VVTAKLLGFTPGELRSYLKGA---------TG-HSQGLVTAVA--------IA------- 284
Query: 71 GNEWTAKSWAD-HENLSEYLWFVGEMGREKATSLLEREADGTYLLRI--RPQGPTHPNET 127
SW ++ + + T L I R +PN +
Sbjct: 285 ----ETDSWESFFVSVRKAI---------------------TVLFFIGVRCYE-AYPNTS 318
Query: 128 IYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERN----------- 176
+ L+ + GVP LS S + V+ + N
Sbjct: 319 LPPSILEDSLENNE---------GVPSPMLSISNLTQEQVQDY-VNKTNSHLPAGKQVEI 368
Query: 177 SLI---ENFI---------GLNVRLQ------------LPF--RQIIAVAEFD--FCP-- 206
SL+ +N + GLN+ L+ +PF R++ F P
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 207 ----TEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFFQLYWGNFRLLSS----- 257
A+ L K L K + K D ++ + + R+LS
Sbjct: 429 SHLLVPASDLINKD------LVKNNVS---FNAK-DIQIPVYDTFDGSDLRVLSGSISER 478
Query: 258 ---LFIVPPVRLSWSTTC 272
I PV+ W TT
Sbjct: 479 IVDCIIRLPVK--WETTT 494
>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3
domain, PEST phosphatase-interacting protein 1, CD2-
binding protein 1; NMR {Homo sapiens}
Length = 69
Score = 40.3 bits (95), Expect = 3e-05
Identities = 9/47 (19%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A +D+ ++L L G + V+ + + GWW + + + +
Sbjct: 11 YRALYDYTAQNPDELDLSAGDILEVILEGED--GWWTVERNGQRGFV 55
>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm,
SH3 domain, signaling protein; NMR {Homo sapiens} PDB:
2rol_A
Length = 68
Score = 40.0 bits (94), Expect = 3e-05
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+ +DF +++L +KQ + VL + WWK +
Sbjct: 10 WVLCNYDFQARNSSELSVKQRDVLEVLDDSRK---WWKVR 46
>1g2b_A Spectrin alpha chain; capping protein, calcium-binding,
duplication, repeat, SH3 domain, cytoskeleton, metal
binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1
PDB: 1tud_A
Length = 62
Score = 40.1 bits (94), Expect = 3e-05
Identities = 9/42 (21%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID 238
+ +A +D+ ++ +K+G + +L+ K WWK +++
Sbjct: 23 LVLALYDYQEKSPREVTMKKGDILTLLNS--TNKDWWKVEVN 62
>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel,
ATP-binding, developmental protein, lipoprotein,
manganese, metal-binding; 1.60A {Gallus gallus} PDB:
2l2p_A
Length = 79
Score = 40.4 bits (95), Expect = 3e-05
Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 191 LPFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+ + A +D+ + L +G + +L+ WW+ +
Sbjct: 1 MVQISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEG--DWWEAR 44
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide);
1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A
1m30_A 1m3b_A 1m3a_A
Length = 57
Score = 39.8 bits (94), Expect = 3e-05
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDE-RVSYF 244
A FDF + LP K+G + + K E WW + E +
Sbjct: 4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEE--QWWNAEDSEGKRGMI 49
>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput,
structural genomics, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A
Length = 69
Score = 40.0 bits (94), Expect = 4e-05
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 194 RQIIAVAEFDFCPT-EANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+ A +DF + +++LPLK+G V + E GW K
Sbjct: 1 KDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPS--GWSLAK 42
>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 77
Score = 40.1 bits (94), Expect = 4e-05
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
VA FD+ A L + G ++ VL E GWW +
Sbjct: 9 YFVALFDYQARTAEDLSFRAGDKLQVLDTSHE--GWWLAR 46
>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 40.0 bits (94), Expect = 4e-05
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQ-KGWWKGKIDERVSYF 244
A A +D CP +++L +G + +L + + +GWWK + R
Sbjct: 10 ARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLA 57
>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces
cerevisiae}
Length = 54
Score = 39.4 bits (93), Expect = 4e-05
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 200 AEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A + + +++ + G + V+ + GW G+ D F
Sbjct: 5 AIYAYEAQGDDEISIDPGDIITVIRGDDGS-GWTYGECDGLKGLF 48
>1i07_A Epidermal growth factor receptor kinase substrate EPS8;
hormone/growth factor; 1.80A {Mus musculus} SCOP:
b.34.2.1 PDB: 1aoj_A 1i0c_A
Length = 60
Score = 39.5 bits (93), Expect = 4e-05
Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
A +++DF +++L + + + +L + WWK +
Sbjct: 3 YAKSKYDFVARNSSELSVMKDDVLEILDDRRQ---WWKVR 39
>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural
genomics, phosphorylation, structural protein, yeast,
SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A
Length = 60
Score = 39.5 bits (93), Expect = 4e-05
Identities = 10/43 (23%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDER 240
+ ++DF ++L +K G +V +L + + K WW ++ +
Sbjct: 5 GIVQYDFMAESQDELTIKSGDKVYILDDK-KSKDWWMCQLVDS 46
>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing
adapter molecule 1, SCAM-1, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 90
Score = 40.1 bits (94), Expect = 5e-05
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDER 240
AVA++ F +L ++G + ++ K E W++G+I
Sbjct: 20 AVAQYTFKGDLEVELSFRKGEHICLIRKVNE--NWYEGRITGT 60
>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3
domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A
Length = 60
Score = 39.4 bits (93), Expect = 5e-05
Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 193 FRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+ + A A FDF +L K G VI L K W +G + F
Sbjct: 2 IKHMRAEALFDFTGNSKLELNFKAG-DVIFLLSRIN-KDWLEGTVRGATGIF 51
>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein,
phosphorylation, SH3 domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 78
Score = 40.0 bits (94), Expect = 5e-05
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
VA +D+ + ++L ++G + V+ K + GW++G ++ F
Sbjct: 20 VVAIYDYTKDKEDELSFQEGAIIYVIKKNDD--GWYEGVMNGVTGLF 64
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein;
SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 68
Score = 39.5 bits (93), Expect = 5e-05
Identities = 9/48 (18%), Positives = 16/48 (33%), Gaps = 2/48 (4%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+DF AN+L + + + VL + W + Y
Sbjct: 9 YVKILYDFTARNANELSVLKDEVLEVLEDGRQ--WWKLRSRSGQAGYV 54
>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure,
signaling protein; NMR {Homo sapiens}
Length = 68
Score = 39.5 bits (93), Expect = 5e-05
Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 195 QIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
Q +DF P +L K+G + + ++ E W++G I +F
Sbjct: 3 QPCCRGLYDFEPENQGELGFKEGDIITLTNQIDE--NWYEGMIHGESGFF 50
>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling
protein; NMR {Homo sapiens}
Length = 67
Score = 39.2 bits (92), Expect = 6e-05
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 196 IIAVAEFDFCPT--EANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
I A P + L L+ G V V G W+G+ + + +F
Sbjct: 7 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVS--GQWEGECNGKRGHF 55
>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein
NCK2; T-cell receptor, SH3 domain, immunology, SH2
domain; NMR {Homo sapiens}
Length = 86
Score = 39.8 bits (93), Expect = 6e-05
Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
I +A++D+ + +L +K+ ++ +L WW+ +
Sbjct: 33 IVIAKWDYTAQQDQELDIKKNERLWLLDDSKT---WWRVR 69
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 43.0 bits (101), Expect = 6e-05
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 91 FVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMD 150
F G + RE A LL A+G+YL+R + P Y L+L+ + ++ ++Y
Sbjct: 54 FHGMISREAADQLLI-VAEGSYLIRESQRQPG-----TYTLALRFGSQTRNFRLYYD--- 104
Query: 151 GVPQYFLSQSRYFRSIVELI 170
++F+ + R F SI +L+
Sbjct: 105 --GKHFVGEKR-FESIHDLV 121
>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3,
actin-binding, cytoplasm, cytoskeleton, phosphorylation,
SH3 domain, DNA damage, DNA repair, nucleus; NMR
{Saccharomyces cerevisiae}
Length = 71
Score = 39.6 bits (93), Expect = 6e-05
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+ ++DF ++L +K G +V +L + + K WW +
Sbjct: 8 RGIVQYDFMAESQDELTIKSGDKVYILDDK-KSKDWWMCQ 46
>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 39.3 bits (92), Expect = 7e-05
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 8/53 (15%)
Query: 199 VAEFDFCPTEANQ-------LPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+A D+ P + L L+ G V+V +Q G++ G++
Sbjct: 11 IAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQ-GFYYGELGGHRGLV 62
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors,
peptoids, protein-protein recognition, proline-rich
motifs, signal transduction; 2.50A {Mus musculus} SCOP:
b.34.2.1
Length = 65
Score = 39.1 bits (92), Expect = 7e-05
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDE-RVSYF 244
A FDF + LP K+G + + K E WW + E +
Sbjct: 6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEE--QWWNAEDSEGKRGMI 51
>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel,
transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A
3h0f_A*
Length = 73
Score = 39.2 bits (92), Expect = 7e-05
Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+ VA +D+ + L +G + +L+ + WW+ +
Sbjct: 17 LFVALYDYEAITEDDLSFHKGEKFQILNS--SEGDWWEAR 54
>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched
library, clone:9530076O17...; SH3_1 domain; NMR {Mus
musculus}
Length = 109
Score = 40.1 bits (94), Expect = 9e-05
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
I VA +D+ L K+G + +++ + WW+ +
Sbjct: 29 IFVALYDYEARTTEDLSFKKGERFQIINN--TEGDWWEAR 66
Score = 26.7 bits (59), Expect = 3.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 80 ADHENLSEYLWFVGEMGREKATSLL 104
+++ W+ G+MGR+ A S
Sbjct: 82 VPADSIQAEEWYFGKMGRKDAESGP 106
>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 72
Score = 39.2 bits (92), Expect = 9e-05
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A A + ++L G V ++ GW +G ++ +
Sbjct: 13 AKALYACKAEHDSELSFTAG-TVFDNVHPSQEPGWLEGTLNGKTGLI 58
>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1;
SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB:
1ywp_A 1ywo_A
Length = 61
Score = 38.4 bits (90), Expect = 1e-04
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFF 245
A FD+ ++L + + + K+ GWW+G + +F
Sbjct: 6 VKALFDYKAQREDELTFTKSAIIQNVEKQDG--GWWRGDYGGKKQLWF 51
>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB:
2o31_A 2o9v_A 2o2w_A
Length = 67
Score = 38.8 bits (91), Expect = 1e-04
Identities = 10/41 (24%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID 238
A+A+F+F ++ ++G ++ +L + E W++G+I
Sbjct: 9 AIAKFNFNGDTQVEMSFRKGERITLLRQVDE--NWYEGRIP 47
>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo
sapiens}
Length = 79
Score = 38.8 bits (91), Expect = 1e-04
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A A FDF +L K G + +LS+ + W +G + F
Sbjct: 21 AEALFDFTGNSKLELNFKAGDVIFLLSRINK--DWLEGTVRGATGIF 65
>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 76
Score = 38.9 bits (91), Expect = 1e-04
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 8/54 (14%)
Query: 198 AVAEFDFCPTEANQ-------LPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
VA +D+ P E++ L G + V + E G++ G+++ +
Sbjct: 10 MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDED-GFYYGELNGQKGLV 62
>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D
of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis,
membrane, phagocytosis; NMR {Homo sapiens}
Length = 119
Score = 39.7 bits (92), Expect = 1e-04
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 194 RQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDER 240
++ VA ++F + A QL L+ G V + G+ W++G + +
Sbjct: 58 KERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGD---WYRGYLIKH 101
>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A
{Saccharomyces cerevisiae} PDB: 1yp5_A
Length = 58
Score = 38.0 bits (89), Expect = 1e-04
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 198 AVAEFDFCPT-EANQLPLKQGCQVIVLSKEGEQKGWWKGKI 237
A +DF + ++LPLK+G + + +E GW GK+
Sbjct: 3 FEAAYDFPGSGSPSELPLKKGDVIYITREEPS--GWSLGKL 41
>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; endocytosis, N-WAsp, dynamin, pacsin I,
transferase; 2.64A {Mus musculus} PDB: 2x3x_D
Length = 60
Score = 38.0 bits (89), Expect = 1e-04
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID 238
A +D+ E ++L K G ++ L +E EQ GW +G++D
Sbjct: 6 VRALYDYDGQEQDELSFKAGDELTKLGEEDEQ-GWCRGRLD 45
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine
binding domain, protein tyrosine kinase, signal
transduction, structural genomics; NMR {Homo sapiens}
Length = 118
Score = 39.4 bits (91), Expect = 2e-04
Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 90 WFVGEMGREKATSLLEREA-DGTYLLRIRPQGPTHPNETIYALSLKTD----EKVKHMKV 144
++ R +A LLER G LLR P+ +++ + V+H KV
Sbjct: 23 SCFLKVSRLEAQLLLERYPECGNLLLR-----PSGDGADGVSVTTRQMHNGTHVVRHYKV 77
Query: 145 YEKEMDGVPQYFLSQSR--YFRSIVELICCYERNS 177
+ P+Y + + S+ ++ + ++
Sbjct: 78 KREG----PKYVIDVEQPFSCTSLDAVVNYFVSHT 108
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P,
import machine, SH3 domain, protein transport; NMR
{Saccharomyces cerevisiae} SCOP: b.34.2.1
Length = 69
Score = 38.1 bits (89), Expect = 2e-04
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 198 AVAEFDFCPTEANQ-LPLKQGCQVIVLSKE---GEQKGWWKGKI-DERVSYF 244
A A +DF P + LK+G + +LSK+ G WWK + + + Y
Sbjct: 10 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYI 61
>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide
COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A
Length = 64
Score = 38.0 bits (89), Expect = 2e-04
Identities = 6/40 (15%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKI 237
A +D+ + +++ + G ++ + + GW G +
Sbjct: 9 YRAMYDYSAQDEDEVSFRDGDYIVNVQPIDD--GWMYGTV 46
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase,
oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Length = 341
Score = 41.1 bits (95), Expect = 2e-04
Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 2/108 (1%)
Query: 137 EKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIENFIGLNVRLQLPFRQI 196
+ + + V+ + V +F + + + + +
Sbjct: 116 KSLLSLPVWVLMDEDVRIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAP 175
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A A FDF +L K G + +LS+ K W +G + F
Sbjct: 176 RAEALFDFTGNSKLELNFKAGDVIFLLSRI--NKDWLEGTVRGATGIF 221
>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast,
SH3 domain, structural genomics, contractIle protein;
0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A
Length = 68
Score = 37.7 bits (88), Expect = 2e-04
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 190 QLPFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKI 237
++PF+ VA+F + + L ++ ++IV S E W+ G+
Sbjct: 5 EVPFK---VVAQFPYKSDYEDDLNFEKDQEIIVTSVEDA--EWYFGEY 47
>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 78
Score = 38.1 bits (89), Expect = 2e-04
Identities = 10/47 (21%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
A A DF + ++L ++ + ++S++ E W G+++ +F
Sbjct: 10 AKALLDFERHDDDELGFRKNDIITIISQKDE--HCWVGELNGLRGWF 54
>2v1r_A Peroxisomal membrane protein PAS20; protein transport,
translocation, transmembrane, peptide COM structural
genomics, peroxisome; 2.1A {Saccharomyces cerevisiae}
SCOP: b.34.2.1
Length = 80
Score = 38.2 bits (89), Expect = 2e-04
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 192 PFRQIIAVAEFDFCPTEANQ-LPLKQGCQVIVLSK---EGEQKGWWKGKI-DERVSYF 244
P + A A +DF P + LK+G + +LSK G WWK + + + Y
Sbjct: 11 PSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYI 68
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3,
protein-protein interaction, structural genomics; NMR
{Homo sapiens}
Length = 68
Score = 37.6 bits (88), Expect = 2e-04
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
++F +L + QG ++ VL WW K
Sbjct: 9 KMQVLYEFEARNPRELTVVQGEKLEVLDHSKR---WWLVK 45
>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 78
Score = 38.1 bits (89), Expect = 2e-04
Identities = 5/39 (12%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+ + ++ ++L +++ + V+ G+ + W K +
Sbjct: 16 CKVVYSYKASQPDELTIEEHEVLEVIED-GDMEDWVKAR 53
>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein
10, SH3 domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 70
Score = 37.6 bits (88), Expect = 2e-04
Identities = 6/39 (15%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
VA + F + + + +G + ++ ++ + GW + +
Sbjct: 10 CVAIYHFEGSSEGTISMAEGEDLSLMEED-KGDGWTRVR 47
>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring
finger 2 containing protein, NPPSFA; NMR {Mus musculus}
Length = 70
Score = 37.6 bits (88), Expect = 3e-04
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
+ VA + +L L++G + VL K + GW KG
Sbjct: 9 MFVALHTYSAHRPEELDLQKGEGIRVLGKYQD--GWLKGL 46
>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2,
protei binding, chronic myeloid leukemia; 1.53A {Homo
sapiens}
Length = 69
Score = 37.7 bits (88), Expect = 3e-04
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYFF 245
VA +D+ +++L + +G + V K+ E WW G I + +F
Sbjct: 9 VVALYDYTANRSDELTIHRGDIIRVFFKDNE--DWWYGSIGKGQEGYF 54
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 41.1 bits (96), Expect = 3e-04
Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 90 WFVGEMGREKATSLL-EREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148
WF ++ A +LL R G++L R P+ N+ ++LS++ ++V H+++
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLAR-----PSRKNQGDFSLSVRVGDQVTHIRI---- 54
Query: 149 MDGVPQYFLSQSRYFRSIVELICCY-ERNSLIENFIGLNVRLQLPF 193
+ Y L F ++ EL+ Y ++ ++++ G + L+ P
Sbjct: 55 QNSGDFYDLYGGEKFATLTELVEYYTQQQGVLQDRDGTIIHLKYPL 100
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 40.6 bits (95), Expect = 4e-04
Identities = 24/106 (22%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Query: 90 WFVGEMGREKATSLL-EREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148
WF ++ A +LL R G++L R P+ N+ ++LS++ ++V H+++
Sbjct: 4 WFHRDLSGLDAETLLKGRGVHGSFLAR-----PSRKNQGDFSLSVRVGDQVTHIRI---- 54
Query: 149 MDGVPQYFLSQSRYFRSIVELICCY-ERNSLIENFIGLNVRLQLPF 193
+ Y L F ++ EL+ Y ++ ++++ G + L+ P
Sbjct: 55 QNSGDFYDLYGGEKFATLTELVEYYTQQQGVLQDRDGTIIHLKYPL 100
>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein,
structural protein; 1.30A {Saccharomyces cerevisiae}
SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A
Length = 58
Score = 36.8 bits (86), Expect = 4e-04
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID 238
A AE+D+ E N+L + ++I + + WW G+++
Sbjct: 3 ATAEYDYDAAEDNELTFVENDKIINIEFVDD--DWWLGELE 41
>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 97
Score = 37.9 bits (88), Expect = 4e-04
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
Query: 197 IAVAEFDFCPTEANQ--------LPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
I VA FD+ P + LP K+G + V + G+++G+ R+
Sbjct: 19 IFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDAD-GFYRGETCARLGLI 73
>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural
protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A
Length = 65
Score = 36.9 bits (86), Expect = 4e-04
Identities = 9/41 (21%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKI 237
+ +A +D+ ++ +K+G + +L+ K WWK ++
Sbjct: 3 LVLALYDYQEKSPREVTMKKGDILTLLNS--TNKDWWKVEV 41
>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project
on protein structural and functional analyses; NMR {Homo
sapiens}
Length = 70
Score = 36.8 bits (86), Expect = 4e-04
Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKI 237
A + + P ++L L++G +V V+ + + GW+ G
Sbjct: 10 YRAMYQYRPQNEDELELREGDRVDVMQQCDD--GWFVGVS 47
>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6,
ATP-binding, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein, polymorphism; NMR {Homo sapiens}
Length = 72
Score = 37.0 bits (86), Expect = 5e-04
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 2/46 (4%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVS 242
V +DF +L + G V KE + WW +DE
Sbjct: 12 KYVGLWDFKSRTDEELSFRAGDVFHVARKEEQ--WWWATLLDEAGG 55
>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; GTPase activation,
membrane, metal-binding, SH3 domain; NMR {Homo sapiens}
PDB: 2rqt_A 2rqu_A
Length = 76
Score = 36.9 bits (86), Expect = 5e-04
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKID 238
+D ++L +G +IV +E + WW G I+
Sbjct: 13 VKTIYDCQADNDDELTFIEGEVIIVTGEEDQ--EWWIGHIE 51
>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens}
Length = 184
Score = 38.1 bits (88), Expect = 0.001
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 194 RQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDE 239
++ VA ++F + A QL L+ G V + G+ W++G + +
Sbjct: 16 KERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGD---WYRGYLIK 58
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 37.0 bits (85), Expect = 0.001
Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQK---GWWKGKIDERVSYFFQL 247
A+ D+ T+ ++L LK G V+V+ + ++ GW G + + +L
Sbjct: 47 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKEL 99
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 39.1 bits (91), Expect = 0.001
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 15/135 (11%)
Query: 90 WFVGEM-GREKATSLLEREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148
WF + G E LL R DG++L R P+ N LS++ + V H+K+
Sbjct: 6 WFHPNITGVEAENLLLTRGVDGSFLAR-----PSKSNPGDLTLSVRRNGAVTHIKIQNTG 60
Query: 149 MDGVPQYFLSQSRYFRSIVELICCYERN-SLIENFIGLNVRLQLPFRQIIAVAEFDFCPT 207
Y L F ++ EL+ Y + ++ G + L+ P +E F
Sbjct: 61 ----DYYDLYGGEKFATLAELVQYYMEHHGQLKEKNGDVIELKYPLNCADPTSERWFHGH 116
Query: 208 ----EANQLPLKQGC 218
EA +L ++G
Sbjct: 117 LSGKEAEKLLTEKGK 131
Score = 31.0 bits (70), Expect = 0.43
Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 14/99 (14%)
Query: 90 WFVGEMGREKATSLL-EREADGTYLLRIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKE 148
WF G + ++A LL E+ G++L+R P + LS++T + + +
Sbjct: 112 WFHGHLSGKEAEKLLTEKGKHGSFLVRESQSHPGD-----FVLSVRTGDDKGESNDGKSK 166
Query: 149 MDGVPQYFLSQSRY-------FRSIVELICCYERNSLIE 180
+ V + +Y F S+ +L+ Y++N ++E
Sbjct: 167 VTHVMIRC-QELKYDVGGGERFDSLTDLVEHYKKNPMVE 204
>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein
1, islet-brain-1, IB-1, mitogen-activated P kinase
8-interacting protein 1; 3.00A {Rattus norvegicus}
Length = 71
Score = 35.7 bits (83), Expect = 0.001
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
A F F P ++L L+ ++V + + W++
Sbjct: 9 HRAIFRFVPRHEDELELEVDDPLLVELQAED--YWYEAY 45
>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, protein binding; NMR {Homo sapiens}
SCOP: b.34.2.1
Length = 96
Score = 34.9 bits (80), Expect = 0.004
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 197 IAVAEFDFCPTEANQ------LPLKQGCQVIVLSKEGEQKGWWKGK-IDERVSYF 244
+ VA + + P + LPL G + V E G+++G+ +D +
Sbjct: 19 LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDED-GFYEGELLDGQRGLV 72
>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3
(SH3) domain, all beta structure, signaling protein;
HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*
Length = 62
Score = 34.1 bits (79), Expect = 0.004
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKG 235
A F F P ++L L+ ++V + + W++
Sbjct: 6 HRAIFRFVPRHEDELELEVDDPLLVELQAED--YWYEA 41
>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein,
protein binding; NMR {Homo sapiens}
Length = 83
Score = 34.5 bits (79), Expect = 0.004
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 191 LPFRQIIAVAEFDFCPT-EANQLPLKQGCQVIVLSKEGEQKGWWKGKID 238
+P + A DF + L ++ G + VL + + G WKG I
Sbjct: 14 VPRGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPD--GRWKGHIH 60
>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3,
signaling protein; NMR {Gallus gallus}
Length = 77
Score = 34.4 bits (79), Expect = 0.005
Identities = 7/37 (18%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 208 EANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
++ +K+G + +L+ + WWK ++++R +
Sbjct: 4 GPREVTMKKGDILTLLNSTNK--DWWKVEVNDRQGFV 38
>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1;
IRTKS-SH3, espfu, complex structure, protein binding;
NMR {Homo sapiens}
Length = 67
Score = 33.4 bits (77), Expect = 0.008
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 198 AVAEFDFCP-TEANQLPLKQGCQVIVLSKEGEQKGWWKGKID 238
F + L QG + +L E E+ GW G+ D
Sbjct: 9 VKTIFPHTAGSNKTLLSFAQGDVITLLIPE-EKDGWLYGEHD 49
>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3
domain, five-stranded barrel, mouse cDNA; NMR {Mus
musculus} SCOP: b.34.2.1
Length = 72
Score = 33.1 bits (76), Expect = 0.010
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 2/42 (4%)
Query: 198 AVAEFDFCPTE-ANQLPLKQGCQVIVLSKEGEQKGWWKGKID 238
F L QG + +L E + GW G+ D
Sbjct: 10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKD-GWLYGEHD 50
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal
transduction, transducer, transcription factor; HET:
PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1
b.2.5.5 d.93.1.1 PDB: 1uus_A*
Length = 473
Score = 36.1 bits (82), Expect = 0.011
Identities = 16/108 (14%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 75 TAKSWADHENLSEYLWFVGEMGREKATSLLEREADGTYLLRIRPQGPTHPNE-TIYALSL 133
T + L + G MGR++ L+ + GT+++R +P + I + +
Sbjct: 338 TLRYQRHISTLWQEGIIYGYMGRQEVNDALQNQDPGTFIIRFS---ERNPGQFGIAYIGV 394
Query: 134 KTDEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYERNSLIEN 181
+ ++KH V + + F + + + +
Sbjct: 395 EMPARIKHYLVQPNDTAAAKKTF---PDFLSEHSQFVNLLQWTKDTNG 439
>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange
factor, autoinhibition, domain-swapped, cell junction,
cell project endocytosis; 2.40A {Mus musculus} PDB:
3gf9_A
Length = 283
Score = 35.5 bits (82), Expect = 0.011
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
+ +D+ ++L +G + VL+KE WWKG++ +V F
Sbjct: 5 VIGMYDYTAQNDDELAFSKGQIINVLNKEDP--DWWKGEVSGQVGLF 49
>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 94
Score = 32.9 bits (75), Expect = 0.019
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 200 AEFDFCPTEANQLPLKQGCQVIVLSKEGEQ--KGWWKGK 236
+ + P ++L L G + + E +GW G
Sbjct: 21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGT 59
>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication,
repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus}
SCOP: b.34.2.1
Length = 63
Score = 31.9 bits (73), Expect = 0.022
Identities = 7/35 (20%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 210 NQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVSYF 244
++ +K+G + +L+ + WWK ++++R +
Sbjct: 4 REVTMKKGDILTLLNSTNK--DWWKVEVNDRQGFV 36
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 34.4 bits (77), Expect = 0.035
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 200 AEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDE 239
A +D+ E ++L K G ++ + E EQ GW KG++D
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQ-GWCKGRLDN 471
>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A
{Saccharomyces cerevisiae}
Length = 70
Score = 31.2 bits (71), Expect = 0.055
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 198 AVAEFDF--CPTEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
A A + + +A ++ +Q + V EG WWK +
Sbjct: 8 AKALYPYDADDDDAYEISFEQNEILQVSDIEG---RWWKAR 45
>1u3o_A Huntingtin-associated protein-interacting protein; SH3,
CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Length = 82
Score = 31.5 bits (71), Expect = 0.060
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDERVS 242
+ V DF +++L ++ G V +L + E+ GW + ER
Sbjct: 19 LTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSP 64
>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces
cerevisiae} SCOP: b.34.2.1
Length = 58
Score = 30.2 bits (69), Expect = 0.087
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 198 AVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDER 240
+ + + +++ + G I L GW K D
Sbjct: 4 NKVLYAYVQKDDDEITITPG-DKISLVARDTGSGWTKINNDTT 45
>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural
genomics, structural genomics consortium, SGC, BE
barrel; HET: EDT; 1.50A {Homo sapiens}
Length = 67
Score = 30.4 bits (69), Expect = 0.090
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 198 AVAEFDFCPTEA-NQLPLKQGCQVIVLSKEGEQKGWWKGKID 238
A F + L K+G +I L + GW G+ +
Sbjct: 10 VKAIFSHAAGDNSTLLSFKEG-DLITLLVPEARDGWHYGESE 50
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo
sapiens} PDB: 2gto_A
Length = 96
Score = 30.8 bits (69), Expect = 0.13
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 197 IAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKGWWKGKIDE 239
+A A D N+L KQG Q+ ++ +G W G+
Sbjct: 30 LAKACCDV-KGGKNELSFKQGEQIEIIRITDNPEGKWLGRTAR 71
>3oba_A Beta-galactosidase; TIM barrel, tetramer, GH2, glycosidase,
hydrolase; 2.75A {Kluyveromyces lactis} PDB: 3ob8_A
Length = 1032
Score = 31.4 bits (71), Expect = 0.32
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 4/59 (6%)
Query: 44 CGTGVPLPAMSPRPPLMDIAGAAQP----LGGNEWTAKSWADHENLSEYLWFVGEMGRE 98
G+ +P P L++ +P + T + D L+ + G+
Sbjct: 628 IMDGLCNSEHNPTPGLVEYKKVIEPVHIKIAHGSVTITNKHDFITTDHLLFIDKDTGKT 686
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.0 bits (69), Expect = 0.51
Identities = 26/231 (11%), Positives = 61/231 (26%), Gaps = 76/231 (32%)
Query: 16 LKSRGLRPLCSQACYLACHKQCIPHTGRCGTGVPLPAMS-PRP-PLMDIAGAAQPLGGNE 73
+K+ +P Y+ + + R P + + A L +
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRL------YNDNQVFAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 74 W--------TAKSW------ADHENLSEY----LWF-VGEMGREKATSLLEREADGTYLL 114
+ K+W ++ + W + ++LE L
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN--CNSPETVLEMLQ--KLLY 207
Query: 115 RIRPQGPTHPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLSQSRYFRSIVELICCYE 174
+I P T ++ + L+ ++ L Y
Sbjct: 208 QIDPNW-TSRSDHSSNIKLRIHSIQAELR-----------RLLKSKPY------------ 243
Query: 175 RNSLIENFIGLNVRLQLPFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSK 225
N L+ + LNV+ + F+ C++++ ++
Sbjct: 244 ENCLL---VLLNVQ----NAKAWNA--FNL------------SCKILLTTR 273
Score = 28.3 bits (62), Expect = 3.1
Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 33/148 (22%)
Query: 123 HPNETIYAL--SLKTDEKVKHMKVYEKEMDGV--PQY-FLS---QSRYF-RSIVELICCY 173
L +L + K ++ +K ++ V Y FL ++ S++ +
Sbjct: 59 DAVSGTLRLFWTLLS----KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 174 ERNSL---IENFIGLNV-RLQLPFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQ 229
+R+ L + F NV RLQ P+ ++ L L+ V++ G
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQ-PYLKLRQAL-----------LELRPAKNVLIDGVLGSG 162
Query: 230 KGWWKGKI--DERV--SYFFQLYWGNFR 253
K W + +V F+++W N +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLK 190
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 30.8 bits (69), Expect = 0.55
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 18 SRGLRPLCSQACYLACHKQCIPHTGRCG-TGVPLPAMSPRP 57
+G R C + C + HK+C+ CG G P +
Sbjct: 544 YQGYR--CHR-CRASAHKECLGRVPPCGRHGQDFPGTMKKD 581
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains,
FXR2, structura genomics, structural genomics
consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A
2bkd_N*
Length = 128
Score = 29.3 bits (65), Expect = 0.70
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 14/74 (18%)
Query: 173 YERNSLIENFIGL-NVRLQLPFRQIIAVAEFDFCPTEANQLPLKQGCQVIVLSKEGEQKG 231
+E N E I +VRL P ++ +V + E E G
Sbjct: 34 FENNWQSERQIPFGDVRLPPP-------------ADYNKEITEGDEVEVYSRANEQEPCG 80
Query: 232 WWKGKIDERVSYFF 245
WW ++ F+
Sbjct: 81 WWLARVRMMKGDFY 94
>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV,
signaling protein/signaling protein complex; 1.68A {Mus
musculus} SCOP: b.34.2.1 PDB: 1gcp_A
Length = 70
Score = 28.0 bits (62), Expect = 0.73
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 5/44 (11%)
Query: 198 AVAEFDFCPTEANQ----LPLKQGCQVIVLSKEGEQKGWWKGKI 237
E+ P L L G ++ L+K + WW+G+
Sbjct: 9 VFQEYYGIPPPPGAFGPFLRLNPG-DIVELTKAEAEHNWWEGRN 51
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical
protein BAA76854.1, riken structural genomics/proteomics
initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 92
Score = 28.4 bits (63), Expect = 0.82
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
Query: 199 VAEFDFCPTEANQLPLKQGCQVIVLSKE--GEQKGWWKGKIDERVSY 243
AE +F + + L +G V V+ K+ + W +
Sbjct: 21 QAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGF 67
>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus}
SCOP: b.34.2.1
Length = 78
Score = 28.0 bits (62), Expect = 0.82
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 3/41 (7%)
Query: 206 PTEANQLPLKQGCQVIVLSKEGEQKGWWKGKI--DERVSYF 244
L L G ++ L+K + WW+G+ V +F
Sbjct: 29 GAFGGFLRLNPG-DIVELTKAEAEHNWWEGRNTATNEVGWF 68
>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus}
Length = 77
Score = 27.7 bits (62), Expect = 0.96
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 198 AVAEFDFCP-TEANQLPLKQGCQVIVLSKEGEQKGWWKGK 236
A +DF N+L + +G ++I ++ GW +GK
Sbjct: 12 ARVMYDFAAEPGNNELTVTEG-EIITVTNPNVGGGWLEGK 50
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 29.8 bits (66), Expect = 1.1
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 90 WFVGEMGREKATSLLEREADGTYLLR 115
+ +G + +E+ ++L + GT+LLR
Sbjct: 458 YIMGFISKERERAILSTKPPGTFLLR 483
>1y1u_A Signal transducer and activator of transcription; STAT,
DNA-binding, SH2 domain, transcription REGU signaling
protein; 3.21A {Mus musculus}
Length = 585
Score = 28.2 bits (62), Expect = 3.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 90 WFVGEMGREKATSLLEREADGTYLLR 115
+G + +++A LL + DGT+LLR
Sbjct: 466 AILGFVNKQQAHDLLINKPDGTFLLR 491
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta;
signaling protein; HET: PTR; 3.00A {Homo sapiens}
Length = 683
Score = 28.3 bits (62), Expect = 3.3
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 90 WFVGEMGREKATSLLEREADGTYLLR 115
+G + +E+ +LL+ + GT+LLR
Sbjct: 577 CIMGFISKERERALLKDQQPGTFLLR 602
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta;
complex (SH2 domain/DNA), SH2 domain, transcription
factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP:
a.47.1.1 b.2.5.5 d.93.1.1
Length = 575
Score = 28.3 bits (62), Expect = 3.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 90 WFVGEMGREKATSLLEREADGTYLLR 115
+G + +E+ +LL+ + GT+LLR
Sbjct: 442 CIMGFISKERERALLKDQQPGTFLLR 467
>2oq8_A ORF157, hypothetical protein; archaea, DNA binding, DNA binding
protein; 1.80A {Acidianus filamentous virus 1} PDB:
3ii2_A 3ii3_A 3ile_A 3ild_A
Length = 160
Score = 27.0 bits (59), Expect = 5.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 235 GKIDERVSYFFQLYWGNFRLLSSLFIVP 262
GKI+ER Y + YW F + + P
Sbjct: 85 GKIEERTVYSIETYWHIFIDIENDLNCP 112
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (61), Expect = 6.8
Identities = 22/100 (22%), Positives = 33/100 (33%), Gaps = 24/100 (24%)
Query: 160 SRYFRSIVELICCYERNSLI-----ENFIGLNVRLQLPFRQIIAVAEFDFCPTE-----A 209
++Y SI+E +S I E F G N + Q + V E D P E A
Sbjct: 892 AKYETSILE-------HSGIRLIEPELFNGYNPEKK-EMIQEVIVEE-DLEPFEASKETA 942
Query: 210 NQLPLKQGCQVIVLSKEGEQKGWWKGK-----IDERVSYF 244
Q + G +V + + K + F
Sbjct: 943 EQFKHQHGDKVDIFEIPETGEYSVKLLKGATLYIPKALRF 982
>1zp7_A Recombination protein U; recombination,DNA-binding
protein,resolvase, DNA binding protein; 2.25A {Bacillus
subtilis} PDB: 1rzn_A
Length = 206
Score = 26.8 bits (59), Expect = 7.5
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 122 THPNETIYALSLKTDEKVKHMKVYEKEMDGVPQYFLS--QSRYFRSIVELICCYER 175
N+T + L D +++HMK + DG+ +S YF +L ++R
Sbjct: 104 ETKNKTSFPLQNFHDHQIEHMKQVKA-QDGICFVIISAFDQVYFLEADKLFYFWDR 158
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.440
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,182,124
Number of extensions: 242846
Number of successful extensions: 933
Number of sequences better than 10.0: 1
Number of HSP's gapped: 703
Number of HSP's successfully gapped: 281
Length of query: 272
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 180
Effective length of database: 4,133,061
Effective search space: 743950980
Effective search space used: 743950980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)