BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3211
(84 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HHS|A Chain A, Crystal Structure Of Manduca Sexta Prophenoloxidase
Length = 694
Score = 70.1 bits (170), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/55 (54%), Positives = 39/55 (70%), Gaps = 3/55 (5%)
Query: 20 EQEDYLEYYRHDLGINLFHYHWHEANPFAGN---LVGNHRRGESFYYMHQQMLAR 71
E+E L Y+R DLGINL H+HWH PF+ + +V RRGE F+YMHQQ++AR
Sbjct: 196 EEEHRLAYWREDLGINLHHWHWHLVYPFSASDEKIVAKDRRGELFFYMHQQIIAR 250
>pdb|3HHS|B Chain B, Crystal Structure Of Manduca Sexta Prophenoloxidase
Length = 684
Score = 65.5 bits (158), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 15 SSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAG---NLVGNHRRGESFYYMHQQMLAR 71
++ E E + Y+R D+GINL H+HWH PF ++V RRGE FYYMHQQ++ R
Sbjct: 185 TANTTEPEQRVAYFREDIGINLHHWHWHLVYPFDSADRSIVNKDRRGELFYYMHQQIIGR 244
Query: 72 QSYGLEC 78
+ C
Sbjct: 245 YNVERMC 251
>pdb|1OXY|A Chain A, Crystallographic Analysis Of Oxygenated And Deoxygenated
States Of Arthropod Hemocyanin Shows Unusual Differences
Length = 628
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 7 SLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNL----VGNHRRGESFY 62
+ D + + + + E L YYR D+GIN H+HWH P N R+GE FY
Sbjct: 142 PILVDVQDTGNILDPEYRLAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFY 201
Query: 63 YMHQQMLAR 71
YMHQQM AR
Sbjct: 202 YMHQQMCAR 210
>pdb|1LLA|A Chain A, Crystal Structure Of Deoxygenated Limulus Polyphemus
Subunit Ii Hemocyanin At 2.18 Angstroms Resolution:
Clues For A Mechanism For Allosteric Regulation
pdb|1NOL|A Chain A, Oxygenated Hemocyanin (Subunit Type Ii)
Length = 628
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 7 SLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNL----VGNHRRGESFY 62
+ D + + + + E L YYR D+GIN H+HWH P N R+GE FY
Sbjct: 142 PILVDVQDTGNILDPEYRLAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFY 201
Query: 63 YMHQQMLAR 71
YMHQQM AR
Sbjct: 202 YMHQQMCAR 210
>pdb|1LL1|A Chain A, Hydroxo Bridge Met Form Hemocyanin From Limulus
Length = 628
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 7 SLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNL----VGNHRRGESFY 62
+ D + + + + E L YYR D+GIN H+HWH P N R+GE FY
Sbjct: 142 PILVDVQDTGNILDPEYRLAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFY 201
Query: 63 YMHQQMLAR 71
YMHQQM AR
Sbjct: 202 YMHQQMCAR 210
>pdb|3IXV|A Chain A, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|C Chain C, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|D Chain D, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|E Chain E, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|F Chain F, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|G Chain G, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|H Chain H, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|I Chain I, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|J Chain J, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|K Chain K, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|L Chain L, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|M Chain M, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXW|A Chain A, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|C Chain C, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|D Chain D, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|E Chain E, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|F Chain F, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|G Chain G, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|H Chain H, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|I Chain I, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|J Chain J, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|K Chain K, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|L Chain L, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|M Chain M, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
Length = 626
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 7 SLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGN--LVGNH--RRGESFY 62
S+ + + + + + E L Y+R D+GIN H+HWH P N ++G R+GE F+
Sbjct: 139 SIVVEAEETGNILDPEYKLSYFREDIGINAHHWHWHIVYPATWNPTVMGKEKDRKGELFF 198
Query: 63 YMHQQMLAR 71
YMHQQM AR
Sbjct: 199 YMHQQMCAR 207
>pdb|1HC1|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
Length = 657
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 19 QEQEDYLEYYRHDLGINLFHYHWHEANPF-AGNLVGNH--RRGESFYYMHQQMLAR 71
+ +E + Y+ D+G+N+ H WH PF + G H R+GE F+++H Q+ AR
Sbjct: 175 KNREQRVAYFGEDIGMNIHHVTWHMDFPFWWEDSYGYHLDRKGELFFWVHHQLTAR 230
>pdb|3GWJ|A Chain A, Crystal Structure Of Antheraea Pernyi Arylphorin
pdb|3GWJ|B Chain B, Crystal Structure Of Antheraea Pernyi Arylphorin
pdb|3GWJ|C Chain C, Crystal Structure Of Antheraea Pernyi Arylphorin
pdb|3GWJ|D Chain D, Crystal Structure Of Antheraea Pernyi Arylphorin
pdb|3GWJ|E Chain E, Crystal Structure Of Antheraea Pernyi Arylphorin
pdb|3GWJ|F Chain F, Crystal Structure Of Antheraea Pernyi Arylphorin
Length = 674
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 8/57 (14%)
Query: 21 QEDYLEYYRHDLGINLFHYHWHEANPF------AGNLVGNHRRGESFYYMHQQMLAR 71
+E L Y+ D+G+N +++ +H PF GNL RRGE ++Y + Q+L R
Sbjct: 199 EEQRLAYFTEDIGLNAYYFFFHIHLPFWWTAEKYGNL--KERRGEMYHYFYDQLLTR 253
>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
Lanata
pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
Lanata In Complex With Nadp
Length = 364
Score = 32.3 bits (72), Expect = 0.061, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 38 HYHWHEANPFAGNLVGNHRRGESFYYMHQQMLARQSYGLECG 79
H+ W +P+A N N G+ F + H + + +G+ECG
Sbjct: 234 HHIWAAVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECG 275
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
Length = 416
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 10 FDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEAN 45
+DD S Q Q+ YL+ + H++ FH + E N
Sbjct: 135 YDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEIN 170
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 10 FDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEAN 45
+DD S Q Q+ YL+ + H++ FH + E N
Sbjct: 135 YDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEIN 170
>pdb|2PS2|A Chain A, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Aspergillus Oryzae
pdb|2PS2|B Chain B, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Aspergillus Oryzae
pdb|2PS2|C Chain C, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Aspergillus Oryzae
pdb|2PS2|D Chain D, Crystal Structure Of Putative Mandelate RacemaseMUCONATE
LACTONIZING Enzyme From Aspergillus Oryzae
Length = 371
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 41 WHEANPFAGNLVGNHRRG 58
W E+ PF N + +H RG
Sbjct: 50 WGESTPFGSNYIASHPRG 67
>pdb|1UIJ|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|D Chain D, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|E Chain E, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|F Chain F, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
Length = 416
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 10 FDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEAN 45
+DD S Q Q+ YL+ + H++ FH + E N
Sbjct: 135 YDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEIN 170
>pdb|2VDU|B Chain B, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
pdb|2VDU|D Chain D, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation
Complex
Length = 450
Score = 25.8 bits (55), Expect = 7.4, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 3 NHMFSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNLV 52
N F + D+K SSG+ Q+++ ++ ++L N F + ++N F ++
Sbjct: 364 NDEFQVTLDNKESSGV--QKNFAKFIEYNLNENSFVVNNEKSNEFDSAII 411
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,910,973
Number of Sequences: 62578
Number of extensions: 114386
Number of successful extensions: 418
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 397
Number of HSP's gapped (non-prelim): 16
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)