Query psy3211
Match_columns 84
No_of_seqs 104 out of 341
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 19:11:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ixv_A Hemocyanin AA6 chain; H 100.0 7.5E-38 2.6E-42 257.9 5.5 76 6-81 138-217 (626)
2 1lla_A Hemocyanin (subunit typ 100.0 1.3E-37 4.4E-42 256.3 5.7 75 7-81 142-220 (628)
3 1hc1_A Arthropodan hemocyanin; 100.0 2.2E-37 7.6E-42 255.9 5.6 75 7-81 163-240 (657)
4 3hhs_A Propo-P2, phenoloxidase 100.0 3.1E-37 1.1E-41 256.6 4.6 77 5-81 181-260 (694)
5 3hhs_B Propo-P1, phenoloxidase 100.0 3.8E-37 1.3E-41 255.7 4.4 77 5-81 175-254 (684)
6 3gwj_A Arylphorin; mono-glucos 100.0 5.6E-37 1.9E-41 254.3 4.3 76 6-81 182-263 (674)
7 1urj_A Major DNA-binding prote 36.4 15 0.00051 32.8 1.9 18 66-83 459-478 (1136)
8 3lw5_N Photosystem I-N subunit 12.8 84 0.0029 20.0 1.4 25 10-34 42-67 (85)
9 1v2z_A Circadian clock protein 11.3 47 0.0016 22.2 -0.2 14 23-36 28-41 (111)
10 3kup_A Chromobox protein homol 10.3 1.1E+02 0.0038 17.7 1.3 14 65-78 52-65 (65)
No 1
>3ixv_A Hemocyanin AA6 chain; HC, phenolxoidase activity, tyrosinase (TY), catecholoxidase (CO), enzyme, SDS, cryo-EM, single particle analysis; 6.80A {Androctonus australis} PDB: 3ixw_A
Probab=100.00 E-value=7.5e-38 Score=257.94 Aligned_cols=76 Identities=34% Similarity=0.555 Sum_probs=72.1
Q ss_pred eEEEEecCCCCCCCCCCceeceehhhhchhHHHHHHHhhCCCCC----CCCCcccchhhhHHHHHHHHHHHhhhhhcCCC
Q psy3211 6 FSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAG----NLVGNHRRGESFYYMHQQMLARQSYGLECGVH 81 (84)
Q Consensus 6 ~~~~i~~nyt~~~~~~e~~LsYFtEDigLN~yy~~~h~~yP~w~----~~~~~~RrGElf~y~hqQllARY~LERlSn~~ 81 (84)
.+++||+||||+..++|++||||||||||||||||||++||+|+ .+..||||||+||||||||||||+|||||||.
T Consensus 138 ~~~~i~~nyt~~~~~~E~rlaYF~EDiGlNshh~~whl~YP~~~~~~~~~~~kdRrGElfyYmhqQllARY~lERLSNgL 217 (626)
T 3ixv_A 138 QSIVVEAEETGNILDPEYKLSYFREDIGINAHHWHWHIVYPATWNPTVMGKEKDRKGELFFYMHQQMCARYDSERLSNGL 217 (626)
T ss_dssp SCEEEETTCCCCCCCGGGGGHHHHTCHHHHHHHHHHHHHSCTTCCHHHHSCCCTTHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccEEEeecCCCCCCCccceehhhhccccHHHHHHHHHeeCCcccChhhccCcccccchhHHHHHHHHHHHHhHHhhcCCC
Confidence 46899999999999999999999999999999999999999998 36789999999999999999999999999985
No 2
>1lla_A Hemocyanin (subunit type II); oxygen transport; 2.18A {Limulus polyphemus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1nol_A 1ll1_A 1oxy_A
Probab=100.00 E-value=1.3e-37 Score=256.35 Aligned_cols=75 Identities=39% Similarity=0.622 Sum_probs=69.6
Q ss_pred EEEEecCCCCCCCCCCceeceehhhhchhHHHHHHHhhCCCCCC----CCCcccchhhhHHHHHHHHHHHhhhhhcCCC
Q psy3211 7 SLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGN----LVGNHRRGESFYYMHQQMLARQSYGLECGVH 81 (84)
Q Consensus 7 ~~~i~~nyt~~~~~~e~~LsYFtEDigLN~yy~~~h~~yP~w~~----~~~~~RrGElf~y~hqQllARY~LERlSn~~ 81 (84)
+++||+||||+..++|++||||||||||||||||||++||+|+. +..||||||+||||||||||||+|||||||.
T Consensus 142 ~~~i~~~yt~~~~~~E~rlaYf~EDiGlNshh~~whl~yP~~~~~~~~~~~kdRrGElfyY~hqQllARY~lERLsngL 220 (628)
T 1lla_A 142 PILVDVQDTGNILDPEYRLAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFYYMHQQMCARYDCERLSNGM 220 (628)
T ss_dssp CEEEEC--CCCCCCGGGGGHHHHTCHHHHHHHHHHHHHSCTTCCHHHHSCCCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEeecCCCcCChhhhhhhhhccCChhHHHHHHHhhCCccCchhhccccccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence 58999999999999999999999999999999999999999982 6789999999999999999999999999985
No 3
>1hc1_A Arthropodan hemocyanin; oxygen transport; 3.20A {Panulirus interruptus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1hc2_A 1hc3_A 1hc4_A 1hc5_A 1hc6_A 1hcy_A*
Probab=100.00 E-value=2.2e-37 Score=255.93 Aligned_cols=75 Identities=25% Similarity=0.449 Sum_probs=67.3
Q ss_pred EEEEecCCCCCCCCCCceeceehhhhchhHHHHHHHhhCCCCC---CCCCcccchhhhHHHHHHHHHHHhhhhhcCCC
Q psy3211 7 SLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAG---NLVGNHRRGESFYYMHQQMLARQSYGLECGVH 81 (84)
Q Consensus 7 ~~~i~~nyt~~~~~~e~~LsYFtEDigLN~yy~~~h~~yP~w~---~~~~~~RrGElf~y~hqQllARY~LERlSn~~ 81 (84)
+++||+||||+..++|++||||||||||||||||||++||||+ .+..||||||+||||||||||||+|||||||.
T Consensus 163 ~~~i~~nyt~~~~~~E~rlaYF~EDIGlNshh~~whl~yPfw~~~~~~~~kdRrGElfyY~hqQllARY~lERLsn~L 240 (657)
T 1hc1_A 163 PGTFNVSFTGTKKNREQRVAYFGEDIGMNIHHVTWHMDFPFWWEDSYGYHLDRKGELFFWVHHQLTARFDFERLSNWL 240 (657)
T ss_dssp CCCEECCC----CCSSTTSHHHHTCHHHHHHHHHHHHHSCTTCCTTSSSCCSSTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CeEEEecCCCCcCChhhhhhhhhhccCcceeeeEEEEecccccchhcCccccccchhHHHHHHHHHHHHHHHHhhCCC
Confidence 5689999999999999999999999999999999999999998 35789999999999999999999999999985
No 4
>3hhs_A Propo-P2, phenoloxidase subunit 2; alpha helix, beta strand, melanin biosynthesis, metal-bindin monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta}
Probab=100.00 E-value=3.1e-37 Score=256.61 Aligned_cols=77 Identities=42% Similarity=0.754 Sum_probs=71.9
Q ss_pred ceEEEEecCCCCCCCCCCceeceehhhhchhHHHHHHHhhCCC-CC--CCCCcccchhhhHHHHHHHHHHHhhhhhcCCC
Q psy3211 5 MFSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPF-AG--NLVGNHRRGESFYYMHQQMLARQSYGLECGVH 81 (84)
Q Consensus 5 ~~~~~i~~nyt~~~~~~e~~LsYFtEDigLN~yy~~~h~~yP~-w~--~~~~~~RrGElf~y~hqQllARY~LERlSn~~ 81 (84)
...++||+||||+..++|++||||||||||||||||||++||+ |+ .++.||||||+||||||||||||+|||||||.
T Consensus 181 ~~~~~i~~nyt~~~~~~E~rlaYF~EDIGlNshh~~wHl~YP~~~~~~~~~~kDRrGElfyYmHqQllARY~lERLSNgL 260 (694)
T 3hhs_A 181 RTPIIIPRDYTATDLEEEHRLAYWREDLGINLHHWHWHLVYPFSASDEKIVAKDRRGELFFYMHQQIIARYNCERLCNSL 260 (694)
T ss_dssp CCCEECCSCSSCCTTSGGGGGHHHHTCHHHHHHHHHHHHHSCSCCSSHHHHCCTTHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cccEEEeeccccCCCCchhhhhhhhhccChHHHHHhHhhhcccccccccccccccchhhhHHHHHHHHHHhhhHhhhCCC
Confidence 3578999999999999999999999999999999999999999 56 34689999999999999999999999999985
No 5
>3hhs_B Propo-P1, phenoloxidase subunit 1; alpha helix, beta strand, melanin biosynthesis, metal-bindin monooxygenase, oxidoreductase, secreted; 1.97A {Manduca sexta}
Probab=100.00 E-value=3.8e-37 Score=255.67 Aligned_cols=77 Identities=38% Similarity=0.744 Sum_probs=71.5
Q ss_pred ceEEEEecCCCCCCCCCCceeceehhhhchhHHHHHHHhhCCC-CC--CCCCcccchhhhHHHHHHHHHHHhhhhhcCCC
Q psy3211 5 MFSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPF-AG--NLVGNHRRGESFYYMHQQMLARQSYGLECGVH 81 (84)
Q Consensus 5 ~~~~~i~~nyt~~~~~~e~~LsYFtEDigLN~yy~~~h~~yP~-w~--~~~~~~RrGElf~y~hqQllARY~LERlSn~~ 81 (84)
...++||+||||+..++|++||||||||||||||||||++||+ |+ ..+.||||||+||||||||||||+|||||||.
T Consensus 175 ~~~~~i~~nyt~~~~~~E~rlaYF~EDIGlNshh~~whl~yP~~~~~~~~~~kDRrGElfyYmhqQllARY~lERLSNgL 254 (684)
T 3hhs_B 175 RMPVNVPINYTANTTEPEQRVAYFREDIGINLHHWHWHLVYPFDSADRSIVNKDRRGELFYYMHQQIIGRYNVERMCNGL 254 (684)
T ss_dssp CCCEECCSSCSSCTTCGGGGGHHHHTCHHHHHHHHHHHHHSCSSCSSHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cceEEEeeccccccCCccceeeeehhccChHHHHHHHHhhcccccccchhcccccchhhhHHHHHHHHHHHhHHhhhCCC
Confidence 3578999999999999999999999999999999999999999 55 23689999999999999999999999999985
No 6
>3gwj_A Arylphorin; mono-glucosylated N-glycan, stability, glycosyla glycoprotein, secreted, storage protein, oxygen transport; HET: NAG BMA MAN GLC; 2.43A {Antheraea pernyi}
Probab=100.00 E-value=5.6e-37 Score=254.26 Aligned_cols=76 Identities=24% Similarity=0.363 Sum_probs=70.7
Q ss_pred eEEEEecCCCC--CCCCCCceeceehhhhchhHHHHHHHhhCCCCCC----CCCcccchhhhHHHHHHHHHHHhhhhhcC
Q psy3211 6 FSLYFDDKSSS--GLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGN----LVGNHRRGESFYYMHQQMLARQSYGLECG 79 (84)
Q Consensus 6 ~~~~i~~nyt~--~~~~~e~~LsYFtEDigLN~yy~~~h~~yP~w~~----~~~~~RrGElf~y~hqQllARY~LERlSn 79 (84)
.+++||+|||| ...++|++||||||||||||||||||++||+|+. ++.||||||+||||||||||||+||||||
T Consensus 182 ~~~~i~~nyt~~~~~~~~E~rlaYF~EDIGlNs~h~~whl~yPfw~~~~~~~~~kdRrGElfyYmhqQllARY~lERLSN 261 (674)
T 3gwj_A 182 NHYVYYSNYSNAITYYNEEQRLAYFTEDIGLNAYYFFFHIHLPFWWTAEKYGNLKERRGEMYHYFYDQLLTRYYFERLTN 261 (674)
T ss_dssp TEEEEECCCGGGTCCSSGGGGGHHHHTCHHHHHHHHHHHHHSCTTBCSGGGTHHHHTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeeeecccccccccCChhHhhhhhhccCCHHHHHHHHHHhCCcccCccccccccccCcchhhHHHHHHHHHHHHHHhcC
Confidence 46899999999 5788999999999999999999999999999982 45699999999999999999999999999
Q ss_pred CC
Q psy3211 80 VH 81 (84)
Q Consensus 80 ~~ 81 (84)
|.
T Consensus 262 ~L 263 (674)
T 3gwj_A 262 GL 263 (674)
T ss_dssp TC
T ss_pred CC
Confidence 84
No 7
>1urj_A Major DNA-binding protein; SSB, ICP8, HSV-1, DNA replication, zinc-finger, nuclear protein.; 3.0A {Human herpesvirus 1} SCOP: e.58.1.1
Probab=36.41 E-value=15 Score=32.84 Aligned_cols=18 Identities=17% Similarity=0.039 Sum_probs=15.6
Q ss_pred HHHHHH--HhhhhhcCCCCC
Q psy3211 66 QQMLAR--QSYGLECGVHLG 83 (84)
Q Consensus 66 qQllAR--Y~LERlSn~~~~ 83 (84)
-||||| |||||.+-|.+|
T Consensus 459 PqLLAr~~~YLer~~~~~~~ 478 (1136)
T 1urj_A 459 PALLAKMLFYLERCDGAVIV 478 (1136)
T ss_dssp HHHHHHHHHHHTTCCCCSCC
T ss_pred HHHHHHHHHHHhhccccccc
Confidence 499999 899999987765
No 8
>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N*
Probab=12.77 E-value=84 Score=19.97 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=18.5
Q ss_pred EecCCCCC-CCCCCceeceehhhhch
Q psy3211 10 FDDKSSSG-LQEQEDYLEYYRHDLGI 34 (84)
Q Consensus 10 i~~nyt~~-~~~~e~~LsYFtEDigL 34 (84)
+|-|++|. ..-....+.+-.||+-|
T Consensus 42 FP~Nf~GCq~~a~~~~V~FlsdD~~l 67 (85)
T 3lw5_N 42 FPENFTGCQDLAKQKKVPFLSDDLDL 67 (85)
T ss_dssp CCSCCSCSSSCCCTTBTTBSCCSCCC
T ss_pred CCccccchHHHHhcCCCceeccccee
Confidence 68899987 44455668888888765
No 9
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=11.28 E-value=47 Score=22.19 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=11.6
Q ss_pred ceeceehhhhchhH
Q psy3211 23 DYLEYYRHDLGINL 36 (84)
Q Consensus 23 ~~LsYFtEDigLN~ 36 (84)
-.|+||+.|-.+|.
T Consensus 28 ill~YF~~d~~~nq 41 (111)
T 1v2z_A 28 IVLEYFNTDAKVNE 41 (111)
T ss_dssp HHHHTTCTTSCHHH
T ss_pred HHHHHhCCchHHHH
Confidence 35899999999985
No 10
>3kup_A Chromobox protein homolog 3; chromo shadow domain, structural genomics consortium, SGC, acetylation, chromatin regulator, nucleus, phosphoprotein; 1.77A {Homo sapiens} SCOP: b.34.13.2 PDB: 1dz1_A
Probab=10.29 E-value=1.1e+02 Score=17.73 Aligned_cols=14 Identities=7% Similarity=-0.220 Sum_probs=9.6
Q ss_pred HHHHHHHHhhhhhc
Q psy3211 65 HQQMLARQSYGLEC 78 (84)
Q Consensus 65 hqQllARY~LERlS 78 (84)
.-||+-+|+=|||.
T Consensus 52 ~PqlVI~fYE~~l~ 65 (65)
T 3kup_A 52 CPQIVIAFYEERLT 65 (65)
T ss_dssp CHHHHHHHHHHHC-
T ss_pred ChHHHHHHHHHhcC
Confidence 34778888888773
Done!