RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3211
(84 letters)
>3hhs_B Propo-P1, phenoloxidase subunit 1; alpha helix, beta strand,
melanin biosynthesis, metal-bindin monooxygenase,
oxidoreductase, secreted; 1.97A {Manduca sexta}
Length = 684
Score = 63.5 bits (154), Expect = 1e-13
Identities = 29/59 (49%), Positives = 37/59 (62%), Gaps = 5/59 (8%)
Query: 22 EDYLEYYRHDLGINLFHYHWHEANPFAGN---LVGNHRRGESFYYMHQQMLARQSYGLE 77
E + Y+R D+GINL H+HWH PF +V RRGE FYYMHQQ++ R Y +E
Sbjct: 192 EQRVAYFREDIGINLHHWHWHLVYPFDSADRSIVNKDRRGELFYYMHQQIIGR--YNVE 248
>3hhs_A Propo-P2, phenoloxidase subunit 2; alpha helix, beta strand,
melanin biosynthesis, metal-bindin monooxygenase,
oxidoreductase, secreted; 1.97A {Manduca sexta}
Length = 694
Score = 63.1 bits (153), Expect = 1e-13
Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 5/61 (8%)
Query: 20 EQEDYLEYYRHDLGINLFHYHWHEANPFAGN---LVGNHRRGESFYYMHQQMLARQSYGL 76
E+E L Y+R DLGINL H+HWH PF+ + +V RRGE F+YMHQQ++AR Y
Sbjct: 196 EEEHRLAYWREDLGINLHHWHWHLVYPFSASDEKIVAKDRRGELFFYMHQQIIAR--YNC 253
Query: 77 E 77
E
Sbjct: 254 E 254
>1lla_A Hemocyanin (subunit type II); oxygen transport; 2.18A {Limulus
polyphemus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1nol_A
1ll1_A 1oxy_A
Length = 628
Score = 61.9 bits (150), Expect = 3e-13
Identities = 31/73 (42%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 9 YFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNL----VGNHRRGESFYYM 64
D + + + + E L YYR D+GIN H+HWH P N R+GE FYYM
Sbjct: 144 LVDVQDTGNILDPEYRLAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFYYM 203
Query: 65 HQQMLARQSYGLE 77
HQQM AR Y E
Sbjct: 204 HQQMCAR--YDCE 214
>1hc1_A Arthropodan hemocyanin; oxygen transport; 3.20A {Panulirus
interruptus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB:
1hc2_A 1hc3_A 1hc4_A 1hc5_A 1hc6_A 1hcy_A*
Length = 657
Score = 61.1 bits (148), Expect = 7e-13
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 22 EDYLEYYRHDLGINLFHYHWHEANPFAGNL---VGNHRRGESFYYMHQQMLARQSYGLE 77
E + Y+ D+G+N+ H WH PF R+GE F+++H Q+ AR + E
Sbjct: 178 EQRVAYFGEDIGMNIHHVTWHMDFPFWWEDSYGYHLDRKGELFFWVHHQLTAR--FDFE 234
>3gwj_A Arylphorin; mono-glucosylated N-glycan, stability, glycosyla
glycoprotein, secreted, storage protein, oxygen
transport; HET: NAG BMA MAN GLC; 2.43A {Antheraea
pernyi}
Length = 674
Score = 59.6 bits (144), Expect = 2e-12
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 20 EQEDYLEYYRHDLGINLFHYHWHEANPFAGN----LVGNHRRGESFYYMHQQMLARQSYG 75
+E L Y+ D+G+N +++ +H PF RRGE ++Y + Q+L R Y
Sbjct: 198 NEEQRLAYFTEDIGLNAYYFFFHIHLPFWWTAEKYGNLKERRGEMYHYFYDQLLTR--YY 255
Query: 76 LE 77
E
Sbjct: 256 FE 257
>3ixv_A Hemocyanin AA6 chain; HC, phenolxoidase activity, tyrosinase (TY),
catecholoxidase (CO), enzyme, SDS, cryo-EM, single
particle analysis; 6.80A {Androctonus australis} PDB:
3ixw_A
Length = 626
Score = 59.2 bits (143), Expect = 4e-12
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 1 MSNHMFSLYFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNL----VGNHR 56
S+ + + + + + E L Y+R D+GIN H+HWH P N R
Sbjct: 133 NHPDQQSIVVEAEETGNILDPEYKLSYFREDIGINAHHWHWHIVYPATWNPTVMGKEKDR 192
Query: 57 RGESFYYMHQQMLARQSYGLE 77
+GE F+YMHQQM AR Y E
Sbjct: 193 KGELFFYMHQQMCAR--YDSE 211
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 27.3 bits (61), Expect = 0.54
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 3/31 (9%)
Query: 20 EQEDYLEYYRHDLGINL---FHYHWHEANPF 47
Z D L Y G + HY+ EA
Sbjct: 309 RZWDLLRYRTFGYGHSFGVLBHYYGREAGVE 339
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 25.0 bits (55), Expect = 3.9
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 3/31 (9%)
Query: 20 EQEDYLEYYRHDLGINL---FHYHWHEANPF 47
+ D L+Y G + HY+ EA
Sbjct: 309 LKHDVLQYRTFGYGHSFGTLSHYYGREAGLE 339
>3ats_A Putative uncharacterized protein; hypothetical protein, putative
aminoglycoside phosphortransf transferase; 1.67A
{Mycobacterium tuberculosis} PDB: 3att_A*
Length = 357
Score = 24.6 bits (54), Expect = 4.1
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 17 GLQEQEDYLEYYRHDLGINLFHYHWHEA 44
+ ++D Y+ G+ L HW
Sbjct: 283 EVMREDDVRATYQALTGVELGDLHWFYV 310
>1e9y_A Urease subunit alpha; hydrolase, dodecamer; HET: KCX; 3.00A
{Helicobacter pylori} SCOP: b.85.3.1 d.8.1.1 PDB:
1e9z_A*
Length = 238
Score = 23.9 bits (52), Expect = 7.5
Identities = 4/9 (44%), Positives = 6/9 (66%)
Query: 38 HYHWHEANP 46
H+H+ E N
Sbjct: 144 HFHFFEVNR 152
>3qga_A UREA2, fusion of urease beta and gamma subunits; iron
metalloenzyme, alpha-beta barrel, hydrolase; HET: FME
KCX; 3.00A {Helicobacter mustelae} PDB: 3qgk_A*
Length = 225
Score = 23.9 bits (52), Expect = 7.7
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 38 HYHWHEANP 46
H+H+ EAN
Sbjct: 144 HFHFFEANR 152
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation,
staurosporine, transfe; HET: STU; 2.70A {Homo sapiens}
SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Length = 400
Score = 23.9 bits (52), Expect = 8.9
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 62 YYMHQQMLARQSYGLEC 78
YY+ ++L + Y C
Sbjct: 228 YYVAPEVLGPEKYDKSC 244
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV;
calmodulin-binding, nucleotide-binding,
serine/threonine-protein kinase, ATP-binding; HET: DKI;
2.17A {Homo sapiens}
Length = 349
Score = 23.8 bits (52), Expect = 9.9
Identities = 5/19 (26%), Positives = 9/19 (47%)
Query: 60 SFYYMHQQMLARQSYGLEC 78
+ Y ++L +YG E
Sbjct: 213 TPGYCAPEILRGCAYGPEV 231
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.443
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,372,154
Number of extensions: 67723
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 30
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)