RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3211
         (84 letters)



>d1hc1a2 a.86.1.1 (A:136-398) Arthropod hemocyanin {Spiny lobster
          (Panulirus interruptus) [TaxId: 6735]}
          Length = 263

 Score = 64.3 bits (157), Expect = 1e-14
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 20 EQEDYLEYYRHDLGINLFHYHWHEANPFAGN---LVGNHRRGESFYYMHQQMLARQSYGL 76
           +E  + Y+  D+G+N+ H  WH   PF           R+GE F+++H Q+ AR  +  
Sbjct: 41 NREQRVAYFGEDIGMNIHHVTWHMDFPFWWEDSYGYHLDRKGELFFWVHHQLTAR--FDF 98

Query: 77 E 77
          E
Sbjct: 99 E 99


>d1llaa2 a.86.1.1 (A:110-379) Arthropod hemocyanin {Horseshoe crab
           (Limulus polyphemus) [TaxId: 6850]}
          Length = 270

 Score = 61.3 bits (149), Expect = 1e-13
 Identities = 29/67 (43%), Positives = 36/67 (53%), Gaps = 4/67 (5%)

Query: 9   YFDDKSSSGLQEQEDYLEYYRHDLGINLFHYHWHEANPFAGNL----VGNHRRGESFYYM 64
             D + +  + + E  L YYR D+GIN  H+HWH   P   N         R+GE FYYM
Sbjct: 35  LVDVQDTGNILDPEYRLAYYREDVGINAHHWHWHLVYPSTWNPKYFGKKKDRKGELFYYM 94

Query: 65  HQQMLAR 71
           HQQM AR
Sbjct: 95  HQQMCAR 101


>d1e9ya1 b.85.3.1 (A:106-238) Urease, beta-subunit {Helicobacter
          pylori [TaxId: 210]}
          Length = 133

 Score = 23.2 bits (50), Expect = 4.5
 Identities = 4/9 (44%), Positives = 6/9 (66%)

Query: 38 HYHWHEANP 46
          H+H+ E N 
Sbjct: 39 HFHFFEVNR 47


>d1ejxb_ b.85.3.1 (B:) Urease, beta-subunit {Klebsiella aerogenes
          [TaxId: 28451]}
          Length = 101

 Score = 23.1 bits (50), Expect = 4.8
 Identities = 6/9 (66%), Positives = 7/9 (77%)

Query: 38 HYHWHEANP 46
          HYH+ E NP
Sbjct: 39 HYHFAEVNP 47


>d4ubpb_ b.85.3.1 (B:) Urease, beta-subunit {Bacillus pasteurii
          [TaxId: 1474]}
          Length = 122

 Score = 22.8 bits (49), Expect = 6.0
 Identities = 4/9 (44%), Positives = 5/9 (55%)

Query: 38 HYHWHEANP 46
          H H+ E N 
Sbjct: 41 HIHFVEVNK 49


>d1sxja1 a.80.1.1 (A:548-693) Replication factor C1 {Baker's yeast
          (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 146

 Score = 22.8 bits (49), Expect = 6.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 3  NHMFSLYFDDKSSSGLQEQEDYLEY 27
          N   +LYFDD   + L  QE+YL  
Sbjct: 28 NDKIALYFDDFDFTPLMIQENYLST 52


>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the
           C-terminal domain {Thermus aquaticus [TaxId: 271]}
          Length = 224

 Score = 22.9 bits (48), Expect = 7.9
 Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 3/60 (5%)

Query: 22  EDYLEYYRHDLGINLFHYHWHEANPFAGNL---VGNHRRGESFYYMHQQMLARQSYGLEC 78
           E   E   + L    +        P   NL         G  FY+      A +SYG+E 
Sbjct: 141 EALHERRAYTLFATHYFELTALGLPRLKNLHVAAREEAGGLVFYHQVLPGPASKSYGVEV 200


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.443 

Gapped
Lambda     K      H
   0.267   0.0681    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 345,426
Number of extensions: 13414
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 16
Length of query: 84
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 35
Effective length of database: 1,734,826
Effective search space: 60718910
Effective search space used: 60718910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)