BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3212
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 97.4 bits (241), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 72/117 (61%), Gaps = 3/117 (2%)
Query: 62 NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNV-YCSN-CQAIAD 119
N G E++FGG D F G + + PV+++ YWQ +++I++ V +CS CQAI D
Sbjct: 169 NPEGGAGSELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGGTVMFCSEGCQAIVD 228
Query: 120 TGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRT 176
TGTSLI GPS I +L IGA P+ +G V+C NL+ MP+V + G +TL+ T
Sbjct: 229 TGTSLITGPSDKIKQLQNAIGAAPV-DGEYAVECANLNVMPDVTFTINGVPYTLSPT 284
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 9/54 (16%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
+Y+GTIS+G+PPQ F VIFDTGSSNLW+PS +C+ + AC HS F+
Sbjct: 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCT--SPACKT-------HSRFQ 68
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 80/141 (56%), Gaps = 7/141 (4%)
Query: 41 SILNIACSVDKDKFVGHSHF-----RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGY 95
++L + ++ + K V + F R+ + GGE+M GG D + G ++Y V+RK Y
Sbjct: 41 NVLPVFDNLMQQKLVDQNIFSFYLSRDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAY 100
Query: 96 WQFGVESIKIEKNVYC--SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDC 153
WQ ++ +++ + C+AI DTGTSL++GP + EL K IGAVPL G + C
Sbjct: 101 WQVHLDQVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPC 160
Query: 154 DNLDKMPNVDIILGGKNFTLT 174
+ + +P + + LGGK + L+
Sbjct: 161 EKVSTLPAITLKLGGKGYKLS 181
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 49 VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
V +D F S + +++D++G ++ GG+D + G + + PVS +GYWQ ++SI ++ +
Sbjct: 146 VSQDLF---SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE 202
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
+ CS CQAI DTGTSL+ GP+ IA + IGA ++G + C ++D +P++ +
Sbjct: 203 TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTI 262
Query: 167 GGKNFTLT 174
G + L+
Sbjct: 263 NGVQYPLS 270
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 41/54 (75%), Gaps = 3/54 (5%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKF 54
+ + +Y+GTI +GTP Q+F VIFDTGSSNLW+PS +CS ++ACS D ++F
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS--SLACS-DHNQF 56
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 49 VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
V +D F S + +++D++G ++ GG+D + G + + PVS +GYWQ ++SI ++ +
Sbjct: 146 VSQDLF---SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE 202
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
+ CS CQAI DTGTSL+ GP+ IA + IGA ++G + C ++D +P++ +
Sbjct: 203 TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTI 262
Query: 167 GGKNFTLT 174
G + L+
Sbjct: 263 NGVQYPLS 270
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 41/54 (75%), Gaps = 3/54 (5%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKF 54
+ + +Y+GTI +GTP Q+F VIFDTGSSNLW+PS +CS ++ACS D ++F
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS--SLACS-DHNQF 56
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 49 VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
V +D F S + +++D++G ++ GG+D + G + + PVS +GYWQ ++SI ++ +
Sbjct: 146 VSQDLF---SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE 202
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
+ CS CQAI DTGTSL+ GP+ IA + IGA ++G + C ++D +P++ +
Sbjct: 203 TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTI 262
Query: 167 GGKNFTLT 174
G + L+
Sbjct: 263 DGVQYPLS 270
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 41/54 (75%), Gaps = 3/54 (5%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKF 54
+ + +Y+GTI +GTP Q+F VIFDTGSSNLW+PS +CS ++ACS D ++F
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS--SLACS-DHNQF 56
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 49 VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
V +D F S + +++D++G ++ GG+D + G + + PVS +GYWQ ++SI ++ +
Sbjct: 146 VSQDLF---SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE 202
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
+ CS CQAI DTGTSL+ GP+ IA + IGA ++G + C ++D +P++ +
Sbjct: 203 TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTI 262
Query: 167 GGKNFTLT 174
G + L+
Sbjct: 263 DGVQYPLS 270
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 41/54 (75%), Gaps = 3/54 (5%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKF 54
+ + +Y+GTI +GTP Q+F VIFDTGSSNLW+PS +CS ++ACS D ++F
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS--SLACS-DHNQF 56
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 49 VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
V +D F S + +++D++G ++ GG+D + G + + PVS +GYWQ ++SI ++ +
Sbjct: 190 VSQDLF---SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE 246
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
+ CS CQAI DTGTSL+ GP+ IA + IGA ++G + C ++D +P++ +
Sbjct: 247 TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTI 306
Query: 167 GGKNFTLT 174
G + L+
Sbjct: 307 DGVQYPLS 314
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 41/54 (75%), Gaps = 3/54 (5%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKF 54
+ + +Y+GTI +GTP Q+F VIFDTGSSNLW+PS +CS ++ACS D ++F
Sbjct: 50 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS--SLACS-DHNQF 100
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 78/128 (60%), Gaps = 5/128 (3%)
Query: 49 VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
V +D F S + +++D++G ++ GG+D + G + + PVS +GYWQ ++SI ++ +
Sbjct: 190 VSQDLF---SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE 246
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
+ CS CQAI DTGTSL+ GP+ IA + IGA ++G + C ++D +P++ +
Sbjct: 247 TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTI 306
Query: 167 GGKNFTLT 174
G + L+
Sbjct: 307 DGVQYPLS 314
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 41/54 (75%), Gaps = 3/54 (5%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKF 54
+ + +Y+GTI +GTP Q+F VIFDTGSSNLW+PS +CS ++ACS D ++F
Sbjct: 50 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS--SLACS-DHNQF 100
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 1/126 (0%)
Query: 49 VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EK 107
+D+ +F + + ENGGE FGG+D+ KF GDIT+ PV RK YW+ E I + ++
Sbjct: 147 LDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDE 206
Query: 108 NVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILG 167
+ A DTGTSLI PS + +N IGA + G +DC+ D +P++
Sbjct: 207 YAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGSTGQYTLDCNTRDNLPDLIFNFN 266
Query: 168 GKNFTL 173
G NFT+
Sbjct: 267 GYNFTI 272
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASD- 65
AQYY I+LGTPPQ FKVI DTGSSNLW+PS C L D S+ N ++
Sbjct: 13 AQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEF 72
Query: 66 --ENGGEIMFGGVDKDKF-VGDIT 86
+ G + G + +D +GD+T
Sbjct: 73 AIQYGTGSLEGYISQDTLSIGDLT 96
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 77/128 (60%), Gaps = 5/128 (3%)
Query: 49 VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
V +D F S + +++D++G ++ GG+D + G + + PVS +GYWQ ++SI ++ +
Sbjct: 146 VSQDLF---SVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGE 202
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
+ CS CQAI DTGTSL+ GP+ IA + IGA ++G + C ++ +P++ +
Sbjct: 203 TIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIASLPDIVFTI 262
Query: 167 GGKNFTLT 174
G + L+
Sbjct: 263 NGVQYPLS 270
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 41/54 (75%), Gaps = 3/54 (5%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKF 54
+ + +Y+GTI +GTP Q+F VIFDTGSSNLW+PS +CS ++ACS D ++F
Sbjct: 6 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS--SLACS-DHNQF 56
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 53 KFVGHSHFRNASDENGGEIMF--GGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVY 110
V F D NG E M G +D + G + + PV+ + YWQF V+S+ I V
Sbjct: 146 HLVAQDLFSVYMDRNGQESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVV 205
Query: 111 CSN--CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGG 168
CQAI DTGTS ++GPS I + + IGA G +DCDNL MP V + G
Sbjct: 206 ACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEING 265
Query: 169 KNFTLT 174
K + LT
Sbjct: 266 KMYPLT 271
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
+QY+G I LGTPPQEF V+FDTGSS+ W+PS +C
Sbjct: 14 SQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYC 47
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 53 KFVGHSHFRNASDENGGEIMF--GGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVY 110
V F D NG E M G +D + G + + PV+ + YWQF V+S+ I V
Sbjct: 146 HLVAQDLFSVYMDRNGQESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVV 205
Query: 111 CSN--CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGG 168
CQAI DTGTS ++GPS I + + IGA G +DCDNL MP V + G
Sbjct: 206 ACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEING 265
Query: 169 KNFTLT 174
K + LT
Sbjct: 266 KMYPLT 271
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
+QY+G I LGTPPQEF V+FDTGSS+ W+PS +C
Sbjct: 14 SQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYC 47
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 49 VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EK 107
+D+ +F + + ENGGE FGG+D+ KF GDIT+ PV RK YW+ E I + ++
Sbjct: 147 LDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDE 206
Query: 108 NVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILG 167
+ A DTGTSLI PS + +N IGA G +DC+ D +P++
Sbjct: 207 YAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNTRDNLPDLIFNFN 266
Query: 168 GKNFTL 173
G NFT+
Sbjct: 267 GYNFTI 272
Score = 63.9 bits (154), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASD- 65
AQYY I+LGTPPQ FKVI DTGSSNLW+PS C L D S+ N ++
Sbjct: 13 AQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEF 72
Query: 66 --ENGGEIMFGGVDKDKF-VGDIT 86
+ G + G + +D +GD+T
Sbjct: 73 AIQYGTGSLEGYISQDTLSIGDLT 96
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 49 VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EK 107
+D+ +F + + ENGGE FGG+D+ KF GDIT+ PV RK YW+ E I + ++
Sbjct: 147 LDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDE 206
Query: 108 NVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILG 167
+ A DTGTSLI PS + +N IGA G +DC+ D +P++
Sbjct: 207 YAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNTRDNLPDLIFNFN 266
Query: 168 GKNFTL 173
G NFT+
Sbjct: 267 GYNFTI 272
Score = 63.5 bits (153), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASD- 65
AQYY I+LGTPPQ FKVI DTGSSNLW+PS C L D S+ N ++
Sbjct: 13 AQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEF 72
Query: 66 --ENGGEIMFGGVDKDKF-VGDIT 86
+ G + G + +D +GD+T
Sbjct: 73 AIQYGTGSLEGYISQDTLSIGDLT 96
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 69/118 (58%), Gaps = 3/118 (2%)
Query: 59 HFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI--EKNVYCSN-CQ 115
+ N +GG ++FGGVD + G I ++PV+++ YWQ G+E I + + +CS CQ
Sbjct: 154 YLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQ 213
Query: 116 AIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
AI DTGTSL+ P + ++ L + GA G V+C+++ +P++ I+ G F L
Sbjct: 214 AIVDTGTSLLTVPQQYMSALLQATGAQEDEYGQFLVNCNSIQNLPSLTFIINGVEFPL 271
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 29/34 (85%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
A Y+G IS+GTPPQ F V+FDTGSSNLW+PS +C
Sbjct: 12 AAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYC 45
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 5/125 (4%)
Query: 49 VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
V +D F S + +A D++G ++FGG+D + G + + PV+ +GYWQ V+SI + +
Sbjct: 146 VSQDLF---SVYLSADDQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGE 202
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
+ C+ CQAI DTGTSL+ GP+ IA + IGA ++G V C + +P++ +
Sbjct: 203 AIACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDGDMVVSCSAISSLPDIVFTI 262
Query: 167 GGKNF 171
G +
Sbjct: 263 NGVQY 267
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 35/41 (85%), Gaps = 2/41 (4%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACS 48
+Y+GTI +GTP Q+F V+FDTGSSNLW+PS +CS ++AC+
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS--SLACT 51
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 5/125 (4%)
Query: 49 VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
V +D F S + +A D++G ++FGG+D + G + + PV+ +GYWQ V+SI + +
Sbjct: 146 VSQDLF---SVYLSADDQSGSVVIFGGIDSSYYTGSLNWVPVTVEGYWQITVDSITMNGE 202
Query: 108 NVYCSN-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
+ C+ CQAI DTGTSL+ GP+ IA + IGA ++G V C + +P++ +
Sbjct: 203 AIACAEGCQAIVDTGTSLLTGPTSPIANIQSDIGASENSDGDMVVSCSAISSLPDIVFTI 262
Query: 167 GGKNF 171
G +
Sbjct: 263 NGVQY 267
Score = 60.5 bits (145), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 35/41 (85%), Gaps = 2/41 (4%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACS 48
+Y+GTI +GTP Q+F V+FDTGSSNLW+PS +CS ++AC+
Sbjct: 13 EYFGTIGIGTPAQDFTVVFDTGSSNLWVPSVYCS--SLACT 51
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 58/84 (69%), Gaps = 3/84 (3%)
Query: 61 RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI--EKNVYCS-NCQAI 117
RN +E GGE++FGG+D + F GD TY PV+ + YWQFG+ + I + +C+ CQA
Sbjct: 155 RNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAF 214
Query: 118 ADTGTSLIIGPSKVIAELNKLIGA 141
AD+GTSL+ GP+ ++ ++N IGA
Sbjct: 215 ADSGTSLLSGPTAIVTQINHAIGA 238
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 43/72 (59%), Gaps = 14/72 (19%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASD--- 65
Y+G I +GTPPQ+F VIFDTGSS LW+PS C I + AC HS + ++
Sbjct: 15 YFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKC-INSKACRA-------HSMYESSDSSTY 66
Query: 66 -ENG--GEIMFG 74
ENG G I++G
Sbjct: 67 KENGTFGAIIYG 78
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Query: 49 VDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-K 107
V+KD F S + + NG E+M GGVD + G I + PV+ + YWQ ++ I + +
Sbjct: 146 VEKDLF---SFYLSGGGANGSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQ 202
Query: 108 NVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILG 167
C CQAI DTGTS I+ P +A + K IGA G +C ++ +P++ +
Sbjct: 203 TAACEGCQAIVDTGTSKIVAPVSALANIMKDIGASE-NQGEMMGNCASVQSLPDITFTIN 261
Query: 168 G 168
G
Sbjct: 262 G 262
Score = 67.8 bits (164), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 3/54 (5%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKF 54
M++ +YYG IS+GTPP+ FKVIFDTGSSNLW+ S HCS ACS + +KF
Sbjct: 6 MKNEADTEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQ--ACS-NHNKF 56
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 64/126 (50%), Gaps = 4/126 (3%)
Query: 53 KFVGHSHFRNASDENGGEIMF--GGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEK-NV 109
V F D NG M G +D + G + + PV+ + YWQF V+S+ I V
Sbjct: 143 HLVARDLFSVYMDRNGQGSMLTLGAIDPSYYTGSLHWVPVTLQQYWQFTVDSVTINGVAV 202
Query: 110 YC-SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGG 168
C CQAI DTGTS++ GPS I ++ IGA G V+C NL MP V + G
Sbjct: 203 ACVGGCQAILDTGTSVLFGPSSDILKIQMAIGATENRYGEFDVNCGNLRSMPTVVFEING 262
Query: 169 KNFTLT 174
+++ L+
Sbjct: 263 RDYPLS 268
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 32/40 (80%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
+ S +QY+G I +GTPPQEF V+FDTGSS+LW+PS +C
Sbjct: 5 LTSYLDSQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYC 44
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
Length = 97
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 54/95 (56%), Gaps = 15/95 (15%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHF 60
+++ AQYYG I +GTPPQ F V+FDTGSSNLW+PS HC +L+IAC + H
Sbjct: 7 LKNYMDAQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWI---------HH 57
Query: 61 RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGY 95
+ SD++ + K+ DI Y S GY
Sbjct: 58 KYNSDKSSTYV------KNGTSFDIHYGSGSLSGY 86
>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2
pdb|2NR6|A Chain A, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
pdb|2NR6|B Chain B, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
Length = 330
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 59 HFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCSNCQAI 117
H R E+ GEI+FGG D G+ TY P+ W+F ++ +KI + V + QAI
Sbjct: 158 HARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTTVAPAGTQAI 217
Query: 118 ADTGTSLIIGPSKVIAELNKLIGAV---PLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
DT ++I+GP + +N+ IG V K+DC + +P+V ++ G+NF ++
Sbjct: 218 IDTSKAIIVGPKAYVNPINEAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNIS 277
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
QY G +G Q F +FD+ S N+ + SQ C
Sbjct: 17 TQYAGITKIGN--QNFLTVFDSTSCNVVVASQEC 48
>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3
Length = 334
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 59 HFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCSNCQAI 117
H R E+ GEI+FGG D G+ TY P+ W+F ++ +KI + V + QAI
Sbjct: 160 HARFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTTVAPAGTQAI 219
Query: 118 ADTGTSLIIGPSKVIAELNKLIGAV---PLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
DT ++I+GP + +N+ IG V K+DC + +P+V ++ G+NF ++
Sbjct: 220 IDTSKAIIVGPKAYVNPINEAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNIS 279
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
QY G +G Q F +FD+ S N+ + SQ C
Sbjct: 20 QYAGITKIGN--QNFLTVFDSTSCNVVVASQEC 50
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 29/43 (67%), Positives = 35/43 (81%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSV 49
+QYYG I +GTPPQ FKVIFDTGS+NLW+PS CS L +AC +
Sbjct: 15 SQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGI 57
Score = 63.5 bits (153), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 2/112 (1%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCSN-CQAIADTGTSLI 125
GGE++ GG D + GD Y +S+ WQ ++ + + + C C+ + DTG+S I
Sbjct: 167 GGEVVLGGSDPQHYQGDFHYVSLSKTDSWQITMKGVSVGSSTLLCEEGCEVVVDTGSSFI 226
Query: 126 IGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN 177
P+ + + + +GA V C + +P++ LGG+ +TL+ T+
Sbjct: 227 SAPTSSLKLIMQALGAKEKRLHEYVVSCSQVPTLPDISFNLGGRAYTLSSTD 278
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
QYYG I +GTPPQ FKV+FDTGSSN+W+PS CS L AC K
Sbjct: 18 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK 62
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
QYYG I +GTPPQ FKV+FDTGSSN+W+PS CS L AC K
Sbjct: 61 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK 105
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 58 SHFRNASDEN----GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCS 112
S + N EN GG+I+ GG D + G+ Y + + G WQ ++ + + + C
Sbjct: 202 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCE 261
Query: 113 N-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNF 171
+ C A+ DTG S I G + I +L + +GA V C+ +P++ LGGK +
Sbjct: 262 DGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEY 320
Query: 172 TLT 174
TLT
Sbjct: 321 TLT 323
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
QYYG I +GTPPQ FKV+FDTGSSN+W+PS CS L AC K
Sbjct: 18 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK 62
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 58 SHFRNASDEN----GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCS 112
S + N EN GG+I+ GG D + G+ Y + + G WQ ++ + + + C
Sbjct: 159 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCE 218
Query: 113 N-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNF 171
+ C A+ DTG S I G + I +L + +GA V C+ +P++ LGGK +
Sbjct: 219 DGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEY 277
Query: 172 TLTRTN 177
TLT +
Sbjct: 278 TLTSAD 283
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With
Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With
Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With
Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With
Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With
Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With
Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
QYYG I +GTPPQ FKV+FDTGSSN+W+PS CS L AC K
Sbjct: 18 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK 62
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 58 SHFRNASDEN----GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCS 112
S + N EN GG+I+ GG D + G+ Y + + G WQ ++ + + + C
Sbjct: 159 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCE 218
Query: 113 N-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNF 171
+ C A+ DTG S I G + I +L + +GA V C+ +P++ LGGK +
Sbjct: 219 DGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEY 277
Query: 172 TLTRTN 177
TLT +
Sbjct: 278 TLTSAD 283
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
QYYG I +GTPPQ FKV+FDTGSSN+W+PS CS L AC K
Sbjct: 18 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK 62
Score = 58.9 bits (141), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 60 FRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCSN-CQAI 117
F D GG+I+ GG D + G+ Y + + G WQ ++ + + + C + C A+
Sbjct: 160 FYYNRDSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLAL 219
Query: 118 ADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN 177
DTG S I G + I +L + +GA V C+ +P++ LGGK +TLT +
Sbjct: 220 VDTGASYISGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEYTLTSAD 278
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
QYYG I +GTPPQ FKV+FDTGSSN+W+PS CS L AC K
Sbjct: 14 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK 58
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 58 SHFRNASDEN----GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCS 112
S + N EN GG+I+ GG D + G+ Y + + G WQ ++ + + + C
Sbjct: 155 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCE 214
Query: 113 N-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNF 171
+ C A+ DTG S I G + I +L + +GA V C+ +P++ LGGK +
Sbjct: 215 DGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEY 273
Query: 172 TLTRTN 177
TLT +
Sbjct: 274 TLTSAD 279
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
QYYG I +GTPPQ FKV+FDTGSSN+W+PS CS L AC K
Sbjct: 15 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK 59
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 58 SHFRNASDEN----GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCS 112
S + N EN GG+I+ GG D + G+ Y + + G WQ ++ + + + C
Sbjct: 156 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCE 215
Query: 113 N-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNF 171
+ C A+ DTG S I G + I +L + +GA V C+ +P++ LGGK +
Sbjct: 216 DGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEY 274
Query: 172 TLTRTN 177
TLT +
Sbjct: 275 TLTSAD 280
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of
The "c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of
The "c" Ring
Length = 333
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/45 (64%), Positives = 33/45 (73%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDK 51
QYYG I +GTPPQ FKV+FDTGSSN+W+PS CS L AC K
Sbjct: 11 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHK 55
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 7/126 (5%)
Query: 58 SHFRNASDEN----GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCS 112
S + N EN GG+I+ GG D + G+ Y + + G WQ ++ + + + C
Sbjct: 152 SFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCE 211
Query: 113 N-CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNF 171
+ C A+ DTG S I G + I +L + +GA V C+ +P++ LGGK +
Sbjct: 212 DGCLALVDTGASYISGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEY 270
Query: 172 TLTRTN 177
TLT +
Sbjct: 271 TLTSAD 276
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 48/69 (69%), Gaps = 3/69 (4%)
Query: 76 VDKDKFVGDITYSPVSRKGYWQFGVESIKI--EKNVYCS-NCQAIADTGTSLIIGPSKVI 132
+D +VG+ TY PV++KGYWQF + + + + +C+ C AIAD+GTSL+ GP+ +I
Sbjct: 213 MDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAIADSGTSLLAGPTAII 272
Query: 133 AELNKLIGA 141
E+N+ IGA
Sbjct: 273 TEINEKIGA 281
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 42/64 (65%), Gaps = 8/64 (12%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHF 60
+++ AQY+G I +GTPPQ+F VIFDTGSSNLW+PS C +IAC + HS +
Sbjct: 46 LKNYMNAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKC-YFSIACYL-------HSRY 97
Query: 61 RNAS 64
+ +
Sbjct: 98 KAGA 101
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 100 VESIKIEKNVYCSNCQ-AIADTGTSLIIGPSK--VIAELNKLIGAVPLANGPAKVDCDNL 156
V+S + + CS C+ A+ L ++ ++ +N+L +P G + VDC +L
Sbjct: 341 VKSNGLRADPMCSACEMAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSL 400
Query: 157 DKMPNVDIILGGKNFTL 173
MP+++ +GGK F L
Sbjct: 401 GSMPDIEFTIGGKKFAL 417
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|B Chain B, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|D Chain D, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 176
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCSN-CQAIADTGTSLI 125
GG+I+ GG D + G+ Y + + G WQ ++ + + + C + C A+ DTG S I
Sbjct: 3 GGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCLALVDTGASYI 62
Query: 126 IGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN 177
G + I +L + +GA V C+ +P++ LGGK +TLT +
Sbjct: 63 SGSTSSIEKLMEALGAKKRLFDYV-VKCNEGPTLPDISFHLGGKEYTLTSAD 113
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 69 GEIMFGGVDKDKFVGDITYSPVSR----KGYWQFGVESIKIEKNV-YCSNCQAIADTGTS 123
GE+ FG D K+ G ITY+P++ YW +SI+ + S+ I DTGT+
Sbjct: 158 GELTFGATDSSKYTGSITYTPITSTSPASAYWGIN-QSIRYGSSTSILSSTAGIVDTGTT 216
Query: 124 LIIGPSKVIAELNKLIGAVPLAN-GPAKVDCDNLDKMPNVDIILGGKNFTLT 174
L + S A+ K GAV N G ++ + ++ +GG+ F LT
Sbjct: 217 LTLIASDAFAKYKKATGAVADNNTGLLRLTTAQYANLQSLFFTIGGQTFELT 268
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 13 ISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDK 53
+ +G+P + ++ DTGSSN W+ + + S DK
Sbjct: 18 VGVGSPATTYSLLVDTGSSNTWLGADKSYVKTSTSSATSDK 58
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 64 SDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQ------AI 117
S NGG ++ GG++ + GDI Y+P+ + Y+Q + ++I +C+ AI
Sbjct: 165 SGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCREYNADKAI 224
Query: 118 ADTGTSLIIGPSKVI 132
D+GT+L+ P KV
Sbjct: 225 VDSGTTLLRLPQKVF 239
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY + +GTPPQ+ +++ DTGSSN
Sbjct: 15 YYLEMLIGTPPQKLQILVDTGSSNF 39
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 77 DKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAEL 135
D KF G +T P+ + +G+W V+ + + S+ I DTGT+L+I P+ + A +
Sbjct: 175 DSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASV 234
Query: 136 NKLIGAVPLANGPAKVDCDNLDKMPNV 162
+ GA +G + CD P V
Sbjct: 235 ARAYGASDNGDGTYTISCDTSRFKPLV 261
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
+YYG +++GTP ++F + FDTGSS+LWI S C+
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCT 49
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%)
Query: 56 GHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQ 115
+S + N+ D + G+I+FGGVD K+ G +T PV+ + + SI + +N
Sbjct: 155 AYSLYLNSEDASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVSTNAD 214
Query: 116 AIADTGTSLIIGPSKVIAELNKLIGA 141
+ D+GT++ + +++GA
Sbjct: 215 VVLDSGTTITYFSQSTADKFARIVGA 240
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNLWI 35
Y I +G+ Q+ V+ DTGSS+LW+
Sbjct: 14 YAADIVVGSNQQKQTVVIDTGSSDLWV 40
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
+YYG +++GTP ++F + FDTGSS+LWI S C+
Sbjct: 16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCT 49
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 77 DKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAEL 135
D KF G +T P+ + +G+W V+ + + S+ I DTGT+L+I P+ + A +
Sbjct: 175 DSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDGILDTGTTLLILPNNIAASV 234
Query: 136 NKLIGAVPLANGPAKVDCDNLDKMPNV 162
+ GA +G + CD P V
Sbjct: 235 ARAYGASDNGDGTYTISCDTSAFKPLV 261
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 17/96 (17%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDEN 67
+YG +GT Q F IFDTGS+NLW+PS +C +I CS H +AS
Sbjct: 15 MFYGEGQIGTNKQPFMFIFDTGSANLWVPSVNCD--SIGCST--------KHLYDASASK 64
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESI 103
E KD +I+Y + +GY+ V S+
Sbjct: 65 SYE-------KDGTKVEISYGSGTVRGYFSKDVISL 93
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 54/110 (49%), Gaps = 4/110 (3%)
Query: 65 DENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSL 124
D++ G + GG++ D + G +TY ++ YWQ ++ I K V A+ D+GTS
Sbjct: 162 DKHVGYLTIGGIESDFYEGPLTYEKLNHDLYWQIDLD-IHFGKYV-MQKANAVVDSGTST 219
Query: 125 IIGPSKVIAELNKLIGAVPLANGPAKV-DCDNLDKMPNVDIILGGKNFTL 173
I P+ + + + + + + P V CDN D +P ++ +TL
Sbjct: 220 ITAPTSFLNKFFRDMNVIKVPFLPLYVTTCDN-DDLPTLEFHSRNNKYTL 268
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSIL 43
YYG +G Q+F IFDTGS+NLW+PS C+ +
Sbjct: 21 VMYYGEAQIGDNKQKFAFIFDTGSANLWVPSAQCNTI 57
Score = 43.1 bits (100), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 54/113 (47%), Gaps = 10/113 (8%)
Query: 65 DENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVE----SIKIEKNVYCSNCQAIADT 120
D++ G + GG++ + G +TY ++ YWQ ++ ++ +EK AI D+
Sbjct: 169 DKHKGYLTIGGIEDRFYEGQLTYEKLNHDLYWQVDLDLHFGNLTVEK------ATAIVDS 222
Query: 121 GTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
GTS I P++ + + + + V + P + N K+P ++ +TL
Sbjct: 223 GTSSITAPTEFLNKFFEGLDVVKIPFLPLYITTCNNPKLPTLEFRSATNVYTL 275
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 57/129 (44%), Gaps = 18/129 (13%)
Query: 31 SNLWIPSQHCSILNI------ACSVDKDKF------------VGHSHFRNASDENGGEIM 72
+N+W S IL I A D D +S + N+++ + G+I+
Sbjct: 112 ANVWSTSARKGILGIGFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEASTGQII 171
Query: 73 FGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVI 132
FGG+DK K+ G + P++ + G+ S+ + +N + D+GT++ ++
Sbjct: 172 FGGIDKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRNVDANTNVLLDSGTTISYFTRSIV 231
Query: 133 AELNKLIGA 141
+ IGA
Sbjct: 232 RNILYAIGA 240
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
Y I++G+ Q+ VI DTGSS+LWIP +
Sbjct: 14 YTADITVGSDNQKLNVIVDTGSSDLWIPDSNV 45
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 17/89 (19%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDEN 67
+YG +G Q+F +IFDTGS+NLW+PS+ C+ +I CS H ++S
Sbjct: 15 MFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN--SIGCST--------KHLYDSSKSK 64
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYW 96
E KD +ITY + +G++
Sbjct: 65 SYE-------KDGTKVEITYGSGTVRGFF 86
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 65 DENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQ------FGVESIKIEKNVYCSNCQAIA 118
D++ G + GG+++ + G++TY ++ +WQ FG S++ I
Sbjct: 162 DKHSGYLTIGGIEEKFYEGELTYEKLNHDLFWQVDLDVNFGKTSME--------KANVIV 213
Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
D+GTS I P+ I + K + + + P + N MP ++ +TL
Sbjct: 214 DSGTSTITAPTSFINKFFKDLNVIKVPFLPFYITTCNNKDMPTLEFKSANNTYTL 268
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDEN 67
+YG +G Q+F +IFDTGS+NLW+PS+ C+ + CS+ +N D +
Sbjct: 63 MFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN--SSGCSI-----------KNLYDSS 109
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYW 96
+ +KD DITY + KG++
Sbjct: 110 KSK----SYEKDGTKVDITYGSGTVKGFF 134
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 65 DENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSL 124
D + G + GG+++ + G+ITY ++ YWQ ++ + K I D+GT+
Sbjct: 210 DVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQT-MEKANVIVDSGTTT 267
Query: 125 IIGPSKVIAELNKLIGAVPLANGPAKV-DCDNLDKMPNVDIILGGKNFTL 173
I PS+ + + + + + P V CDN +MP ++ +TL
Sbjct: 268 ITAPSEFLNKFFANLNVIKVPFLPFYVTTCDN-KEMPTLEFKSANNTYTL 316
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDEN 67
+YG +G Q+F +IFDTGS+NLW+PS+ C+ + CS+ +N D +
Sbjct: 17 MFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN--SSGCSI-----------KNLYDSS 63
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYW 96
+ +KD DITY + KG++
Sbjct: 64 KSK----SYEKDGTKVDITYGSGTVKGFF 88
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 65 DENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSL 124
D + G + GG+++ + G+ITY ++ YWQ ++ + K I D+GT+
Sbjct: 164 DVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQT-MEKANVIVDSGTTT 221
Query: 125 IIGPSKVIAELNKLIGAVPLANGPAKV-DCDNLDKMPNVDIILGGKNFTL 173
I PS+ + + + + + P V CDN +MP ++ +TL
Sbjct: 222 ITAPSEFLNKFFANLNVIKVPFLPFYVTTCDN-KEMPTLEFKSANNTYTL 270
>pdb|1GVT|A Chain A, Endothiapepsin Complex With Cp-80,794
pdb|1GVU|A Chain A, Endothiapepsin Complex With H189
pdb|1GVV|A Chain A, Five Atomic Resolution Structures Of Endothiapepsin
Inhibitor Complexes; Implications For The Aspartic
Proteinase Mechanism
pdb|1GVW|A Chain A, Endothiapepsin Complex With Pd-130,328
pdb|1GVX|A Chain A, Endothiapepsin Complexed With H256
pdb|1OEX|A Chain A, Atomic Resolution Structure Of Endothiapepsin In Complex
With A Hydroxyethylene Transition State Analogue
Inhibitor H261
pdb|2JJI|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2JJJ|A Chain A, Endothiapepsin In Complex With A Gem-Diol Inhibitor.
pdb|2VS2|A Chain A, Neutron Diffraction Structure Of Endothiapepsin In Complex
With A Gem- Diol Inhibitor.
pdb|3URJ|A Chain A, Type Iv Native Endothiapepsin
pdb|3URI|A Chain A, Endothiapepsin-Db5 Complex.
pdb|3URL|A Chain A, Endothiapepsin-Db6 Complex.
pdb|1OEW|A Chain A, Atomic Resolution Structure Of Native Endothiapepsin
Length = 329
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 36 PSQHCSIL-NIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRK- 93
P+Q + N S+D F + N FG +D + G ITY+ VS K
Sbjct: 137 PTQQKTFFDNAKASLDSPVFTADLGYHAPGTYN-----FGFIDTTAYTGSITYTAVSTKQ 191
Query: 94 GYWQFGVESIKIEKNVY-CSNCQAIADTGTSLIIGPSKVIA 133
G+W++ + + ++ IADTGT+L+ P+ V++
Sbjct: 192 GFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVS 232
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSV 49
Y + +GTP Q + FDTGSS+LW+ S + + ++
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTI 57
>pdb|1GKT|A Chain A, Neutron Laue Diffraction Structure Of Endothiapepsin
Complexed With Transition State Analogue Inhibitor H261
Length = 329
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 36 PSQHCSIL-NIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRK- 93
P+Q + N S+D F + N FG +D + G ITY+ VS K
Sbjct: 137 PTQQKTFFDNAKASLDSPVFTADLGYHAPGTYN-----FGFIDTTAYTGSITYTAVSTKQ 191
Query: 94 GYWQFGVESIKIEKNVY-CSNCQAIADTGTSLIIGPSKVIA 133
G+W++ + + ++ IADTGT+L+ P+ V++
Sbjct: 192 GFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVS 232
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSV 49
Y + +GTP Q + FDTGSS+LW+ S + + ++
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTASEVXQTI 57
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 63 ASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVES----IKIEKNVYCSNCQAIA 118
D++ G + GG+++ + G +TY ++ YWQ +++ I +EK +NC I
Sbjct: 284 VHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEK----ANC--IV 337
Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
D+GTS I P+ + ++ + + + + P V N K+P + +TL
Sbjct: 338 DSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTL 392
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
+YG +G Q F I DTGS+NLW+PS C+
Sbjct: 139 MFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT 172
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 58 SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVES----IKIEKNVYCSN 113
+ + D++ G + GG+++ + G +TY ++ YWQ +++ I +EK +N
Sbjct: 155 TFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNISLEK----AN 210
Query: 114 CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
C I D+GTS I P+ + ++ + + + + P V N K+P + +TL
Sbjct: 211 C--IVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTL 268
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
+YG +G Q F I DTGS+NLW+PS C+
Sbjct: 15 MFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT 48
>pdb|1ER8|E Chain E, The Active Site Of Aspartic Proteinases
pdb|2ER0|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes
pdb|2ER6|E Chain E, The Structure Of A Synthetic Pepsin Inhibitor Complexed
With Endothiapepsin.
pdb|2ER7|E Chain E, X-Ray Analyses Of Aspartic Proteinases.Iii.
Three-Dimensional Structure Of Endothiapepsin Complexed
With A Transition-State Isostere Inhibitor Of Renin At
1.6 Angstroms Resolution
pdb|2ER9|E Chain E, X-Ray Studies Of Aspartic Proteinase-Statine Inhibitor
Complexes.
pdb|3ER3|E Chain E, The Active Site Of Aspartic Proteinases
pdb|3ER5|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER1|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER2|E Chain E, The Active Site Of Aspartic Proteinases
pdb|4ER4|E Chain E, High-Resolution X-Ray Analyses Of Renin Inhibitor-Aspartic
Proteinase Complexes
pdb|5ER1|E Chain E, A Rational Approach To The Design Of Antihypertensives.
X-Ray Studies Of Complexes Between Aspartic Proteinases
And Aminoalcohol Renin Inhibitors
pdb|5ER2|E Chain E, High-Resolution X-Ray Diffraction Study Of The Complex
Between Endothiapepsin And An Oligopeptide Inhibitor.
The Analysis Of The Inhibitor Binding And Description Of
The Rigid Body Shift In The Enzyme
pdb|1EED|P Chain P, X-Ray Crystallographic Analysis Of Inhibition Of
Endothiapepsin By Cyclohexyl Renin Inhibitors
pdb|1ENT|E Chain E, X-Ray Analyses Of Aspartic Proteinases. The
Three-Dimensional Structure At 2.1 Angstroms Resolution
Of Endothiapepsin
pdb|1EPL|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPM|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPN|E Chain E, A Structural Comparison Of 21 Inhibitor Complexes Of The
Aspartic Proteinase From Endothia Parasitica
pdb|1EPO|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Cp-81,282 (Mor Phe Nle Chf Nme)
pdb|1EPP|E Chain E, Endothia Aspartic Proteinase (endothiapepsin) Complexed
With Pd-130, 693 (mas Phe Lys+mtf Sta Mba)
pdb|1EPQ|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-133, 450 (Sot Phe Gly+scc Gcl)
pdb|1E5O|E Chain E, Endothiapepsin Complex With Inhibitor Db2
pdb|1E81|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd61395
pdb|1E82|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd59601
pdb|1E80|E Chain E, Endothiapepsin Complex With Renin Inhibitor
Merck-Kgaa-Emd56133
pdb|1OD1|A Chain A, Endothiapepsin Pd135,040 Complex
pdb|4APE|A Chain A, The Active Site Of Aspartic Proteinases
pdb|2V00|A Chain A, X-Ray Crystal Structure Of Endothiapepsin Complexed With
Compound 1
pdb|3LZY|A Chain A, Crystal Structure Of Endothiapesin In Complex With Xenon
pdb|3PB5|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PBZ|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCW|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PCZ|A Chain A, Endothiapepsin In Complex With Benzamidine
pdb|3PGI|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PRS|A Chain A, Endothiapepsin In Complex With Ritonavir
pdb|3PI0|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLD|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PLL|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PM4|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMU|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PMY|A Chain A, Endothiapepsin In Complex With A Fragment
pdb|3PSY|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3PWW|A Chain A, Endothiapepsin In Complex With Saquinavir
pdb|3Q6Y|A Chain A, Endothiapepsin In Complex With A Pyrrolidine Based
Inhibitor
pdb|3T6I|A Chain A, Endothiapepsin In Complex With An Azepin Derivative
pdb|3T7P|A Chain A, Endothiapepsin In Complex With A Hydrazide Derivative
pdb|3T7Q|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
pdb|3T7X|A Chain A, Endothiapepsin In Complex With An Inhibitor Based On The
Gewald Reaction
Length = 330
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 36 PSQHCSIL-NIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRK- 93
P+Q + N S+D F + N FG +D + G ITY+ VS K
Sbjct: 138 PTQQKTFFDNAKASLDSPVFTADLGYHAPGTYN-----FGFIDTTAYTGSITYTAVSTKQ 192
Query: 94 GYWQFGVESIKIEKNVY-CSNCQAIADTGTSLIIGPSKVIA 133
G+W++ + + ++ IADTGT+L+ P+ V++
Sbjct: 193 GFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVS 233
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
Y + +GTP Q + FDTGSS+LW+ S +
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETT 49
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 58 SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVES----IKIEKNVYCSN 113
+ + D++ G + GG+++ + G +TY ++ YWQ +++ I +EK +N
Sbjct: 157 TFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNISLEK----AN 212
Query: 114 CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
C I D+GTS I P+ + ++ + + + + P V N K+P + +TL
Sbjct: 213 C--IVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTL 270
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
+YG +G Q F I DTGS+NLW+PS C+
Sbjct: 17 MFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT 50
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 58 SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVES----IKIEKNVYCSN 113
+ + D++ G + GG+++ + G +TY ++ YWQ +++ I +EK +N
Sbjct: 155 TFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEK----AN 210
Query: 114 CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
C I D+GTS I P+ + ++ + + + + P V N K+P + +TL
Sbjct: 211 C--IVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTL 268
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
+YG +G Q F I DTGS+NLW+PS C+
Sbjct: 15 MFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT 48
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 58/120 (48%), Gaps = 10/120 (8%)
Query: 58 SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVES----IKIEKNVYCSN 113
+ + D++ G + GG+++ + G +TY ++ YWQ +++ I +EK +N
Sbjct: 157 TFYLPVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEK----AN 212
Query: 114 CQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
C I D+GTS I P+ + ++ + + + + P V N K+P + +TL
Sbjct: 213 C--IVDSGTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTL 270
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
+YG +G Q F I DTGS+NLW+PS C+
Sbjct: 17 MFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT 50
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
+Y +S+GTP Q+F ++FDTGSS+ W+P + C+
Sbjct: 19 EYAIPVSIGTPGQDFLLLFDTGSSDTWVPHKGCT 52
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 9/84 (10%)
Query: 69 GEIMFGGVDKDKFVGDITYSPV-SRKG---YWQFGVESIKIEKN--VYCSNCQAIA-DTG 121
GE++FGGV+ GDI Y+ V SR G +W V I ++ + V S QA DTG
Sbjct: 180 GEVVFGGVNNTLLGGDIAYTDVMSRYGGYYFWDAPVTGITVDGSAAVRFSRPQAFTIDTG 239
Query: 122 TSLIIGPSKVIAELNKLIGAVPLA 145
T+ I PS +++ K A+P A
Sbjct: 240 TNFFIMPSSAASKIVK--AALPDA 261
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 43.1 bits (100), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 10/113 (8%)
Query: 65 DENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVES----IKIEKNVYCSNCQAIADT 120
D++ G + GG+++ + G +TY ++ YWQ +++ I +EK +NC I D+
Sbjct: 213 DKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVGNIMLEK----ANC--IVDS 266
Query: 121 GTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTL 173
GTS I P+ + ++ + + + + P V N K+P + +TL
Sbjct: 267 GTSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTL 319
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
+YG +G Q F I DTGS+NLW+PS C+
Sbjct: 66 MFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT 99
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 25/33 (75%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
+Y +S+GTP Q+F ++FDTGSS+ W+P + C
Sbjct: 19 EYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGC 51
Score = 30.0 bits (66), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 83 GDITYSPV--SRKGY--WQFGVESIKIEKN--VYCSNCQAIA-DTGTSLIIGPSKVIAEL 135
GDI Y+ V SR GY W V +KI+ + V QA DTGT+ I PS ++
Sbjct: 194 GDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAFTIDTGTNFFIAPSSFAEKV 253
Query: 136 NKLIGAVPLA 145
K A+P A
Sbjct: 254 VK--AALPDA 261
>pdb|1EPR|E Chain E, Endothia Aspartic Proteinase (Endothiapepsin) Complexed
With Pd-135, 040
Length = 330
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 36 PSQHCSIL-NIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRK- 93
P+Q + N S+D F + N FG +D + G ITY+ VS K
Sbjct: 138 PTQXKTFFDNAKASLDSPVFTADLGYHAPGTYN-----FGFIDTTAYTGSITYTAVSTKQ 192
Query: 94 GYWQFGVESIKIEKNVY-CSNCQAIADTGTSLIIGPSKVIA 133
G+W++ + + ++ IADTGT+L+ P+ V++
Sbjct: 193 GFWEWTSTGYAVGSGTFKSTSIDGIADTGTTLLYLPATVVS 233
Score = 33.5 bits (75), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
Y + +GTP Q + FDTGSS+LW+ S +
Sbjct: 17 YITPVQIGTPAQTLNLDFDTGSSDLWVFSSETT 49
>pdb|1PPL|E Chain E, Crystallographic Analysis Of Transition-State Mimics Bound
To Penicillopepsin: Phosphorus-Containing Peptide
Analogues
pdb|1PPM|E Chain E, Crystallographic Analysis Of Transition-state Mimics Bound
To Penicillopepsin: Phosphorus-containing Peptide
Analogues
pdb|1APT|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APU|E Chain E, Crystallographic Analysis Of A Pepstatin Analogue Binding
To The Aspartyl Proteinase Penicillopepsin At 1.8
Angstroms Resolution
pdb|1APV|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1APW|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Difluorostatine-And
Difluorostatone-Containing Peptides
pdb|1PPK|E Chain E, Crystallographic Analysis Of Transition State Mimics Bound
To Penicillopepsin: Phosphorous-Containing Peptide
Analogues
pdb|1BXO|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl
Cyclo[(2s)-2-[[(1r)-1-(N-(L-N-(3-
Methylbutanoyl)valyl-L-Aspartyl)amino)-3-Methylbut Yl]
Hydroxyphosphinyloxy]-3-(3-Aminomethyl) Phenylpropanoate
pdb|1BXQ|A Chain A, Acid Proteinase (Penicillopepsin) Complex With Phosphonate
Inhibitor.
pdb|2WEA|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl[cyclo-7[(2r)-((N-Valyl)
Amino)-2-(Hydroxyl-(1s)-1-Methyoxycarbonyl-2-
Phenylethoxy)
Phosphinyloxy-Ethyl]-1-Naphthaleneacetamide], Sodium
Salt
pdb|2WEB|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Inhibitor:
Methyl(2s)-[1-(((n-formyl)-l-
Valyl)amino-2-(2-naphthyl)ethyl)hydroxyphosphinyloxy]-3-
Phenylpropanoate, Sodium Salt
pdb|2WEC|A Chain A, Acid Proteinase (Penicillopepsin) (E.C.3.4.23.20) Complex
With Phosphonate Inhibitor: Methyl(2s)-[1-(((N-(1-
Naphthaleneacetyl))-L-Valyl)aminomethyl)hydroxy
Phosphinyloxy]-3-Phenylpropanoate, Sodium Salt
pdb|2WED|A Chain A, Acid Proteinase (penicillopepsin) (e.c.3.4.23.20) Complex
With Phosphonate Macrocyclic
Inhibitor:methyl[cyclo-7[(2r)-
((n-valyl)amino)-2-(hydroxyl-(1s)-1-methyoxycarbonyl-2-
Phenylethoxy)phosphinyloxy-ethyl]-1-
naphthaleneacetamide], Sodium Salt
pdb|3APP|A Chain A, Structure And Refinement Of Penicillopepsin At 1.8
Angstroms Resolution
Length = 323
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 18/110 (16%)
Query: 73 FGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSNCQA------IADTGTSLI 125
FG +D K+ G +TY+ V + +G+W F V+S Y + Q+ IADTGT+L+
Sbjct: 167 FGFIDSSKYTGSLTYTGVDNSQGFWSFNVDS-------YTAGSQSGDGFSGIADTGTTLL 219
Query: 126 IGPSKVIAE-LNKLIGAVPLANGPAKV-DCDNLDKMPNVDIILGGKNFTL 173
+ V+++ +++ GA +N V DC +P+ + + G T+
Sbjct: 220 LLDDSVVSQYYSQVSGAQQDSNAGGYVFDCST--NLPDFSVSISGYTATV 267
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%)
Query: 57 HSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQA 116
+S + N+ G I+FGGVD K+ G + V+ + S+ ++ + + A
Sbjct: 158 YSLYLNSPSAETGTIIFGGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFSFGDGA 217
Query: 117 IADTGTSLIIGPSKVIAELNKLIGA 141
+ D+GT+L PS A+L GA
Sbjct: 218 LLDSGTTLTYFPSDFAAQLADKAGA 242
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNLWI 35
Y +S+G+ Q+ VI DTGSS+ W+
Sbjct: 14 YASKVSVGSNKQQQTVIIDTGSSDFWV 40
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 192 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 251
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 252 TTNLRLPKKVFEAAVKSIKA 271
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNF 59
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 194 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 253
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 254 TTNLRLPKKVFEAAVKSIKA 273
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 37 YYVEMTVGSPPQTLNILVDTGSSNF 61
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 192 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 251
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 252 TTNLRLPKKVFEAAVKSIKA 271
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 35 YYVEMTVGSPPQTLNILVDTGSSNF 59
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 250
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 251 TTNLRLPKKVFEAAVKSIKA 270
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNF 58
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 250
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 251 TTNLRLPKKVFEAAVKSIKA 270
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNF 58
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 250
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 251 TTNLRLPKKVFEAAVKSIKA 270
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNF 58
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 250
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 251 TTNLRLPKKVFEAAVKSIKA 270
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNF 58
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 250
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 251 TTNLRLPKKVFEAAVKSIKA 270
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNF 58
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 250
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 251 TTNLRLPKKVFEAAVKSIKA 270
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNF 58
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 250
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 251 TTNLRLPKKVFEAAVKSIKA 270
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNF 58
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 188 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 247
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 248 TTNLRLPKKVFEAAVKSIKA 267
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 31 YYVEMTVGSPPQTLNILVDTGSSNF 55
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 177 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 236
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 237 TTNLRLPKKVFEAAVKSIKA 256
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNF 44
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 174 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 233
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 234 TTNLRLPKKVFEAAVKSIKA 253
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNF 41
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 187 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 246
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 247 TTNLRLPKKVFEAAVKSIKA 266
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNF 54
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 180 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 239
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 240 TTNLRLPKKVFEAAVKSIKA 259
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNF 47
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 177 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 236
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 237 TTNLRLPKKVFEAAVKSIKA 256
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNF 44
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 190 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 249
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 250 TTNLRLPKKVFEAAVKSIKA 269
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNF 57
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 189 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 248
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 249 TTNLRLPKKVFEAAVKSIKA 268
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 32 YYVEMTVGSPPQTLNILVDTGSSNF 56
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 190 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 249
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 250 TTNLRLPKKVFEAAVKSIKA 269
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNF 57
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 177 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 236
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 237 TTNLRLPKKVFEAAVKSIKA 256
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNF 44
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 187 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 246
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 247 TTNLRLPKKVFEAAVKSIKA 266
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNL 33
+R YY +++G+PPQ ++ DTGSSN
Sbjct: 22 LRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNF 54
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 211 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 270
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 271 TTNLRLPKKVFEAAVKSIKA 290
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNF 78
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 175 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 234
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 235 TTNLRLPKKVFEAAVKSIKA 254
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNF 42
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 190 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 249
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 250 TTNLRLPKKVFEAAVKSIKA 269
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 33 YYVEMTVGSPPQTLNILVDTGSSNF 57
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 180 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 239
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 240 TTNLRLPKKVFEAAVKSIKA 259
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 23 YYVEMTVGSPPQTLNILVDTGSSNF 47
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 172 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 231
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 232 TTNLRLPKKVFEAAVKSIKA 251
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNF 39
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 175 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 234
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 235 TTNLRLPKKVFEAAVKSIKA 254
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNF 42
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 187 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 246
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 247 TTNLRLPKKVFEAAVKSIKA 266
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNF 54
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 175 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 234
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 235 TTNLRLPKKVFEAAVKSIKA 254
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNF 42
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 211 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 270
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 271 TTNLRLPKKVFEAAVKSIKA 290
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 54 YYVEMTVGSPPQTLNILVDTGSSNF 78
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 172 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 231
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 232 TTNLRLPKKVFEAAVKSIKA 251
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 15 YYVEMTVGSPPQTLNILVDTGSSNF 39
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 171 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 230
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 231 TTNLRLPKKVFEAAVKSIKA 250
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 14 YYVEMTVGSPPQTLNILVDTGSSNF 38
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 175 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 234
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 235 TTNLRLPKKVFEAAVKSIKA 254
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNF 42
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 197 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 256
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 257 TTNLRLPKKVFEAAVKSIKA 276
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 40 YYVEMTVGSPPQTLNILVDTGSSNF 64
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 176 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 235
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 236 TTNLRLPKKVFEAAVKSIKA 255
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 19 YYVEMTVGSPPQTLNILVDTGSSNF 43
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 178 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 237
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 238 TTNLRLPKKVFEAAVKSIKA 257
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 21 YYVEMTVGSPPQTLNILVDTGSSNF 45
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 187 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 246
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 247 TTNLRLPKKVFEAAVKSIKA 266
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNF 54
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 175 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 234
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 235 TTNLRLPKKVFEAAVKSIKA 254
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 18 YYVEMTVGSPPQTLNILVDTGSSNF 42
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 174 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 233
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 234 TTNLRLPKKVFEAAVKSIKA 253
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 17 YYVEMTVGSPPQTLNILVDTGSSNF 41
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 233 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 292
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 293 TTNLRLPKKVFEAAVKSIKA 312
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNL 33
+R YY +++G+PPQ ++ DTGSSN
Sbjct: 68 LRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNF 100
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 234 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 293
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 294 TTNLRLPKKVFEAAVKSIKA 313
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNL 33
+R YY +++G+PPQ ++ DTGSSN
Sbjct: 69 LRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNF 101
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 234 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 293
Query: 122 TSLIIGPSKVIAELNKLIGA 141
T+ + P KV K I A
Sbjct: 294 TTNLRLPKKVFEAAVKSIKA 313
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNL 33
+R YY +++G+PPQ ++ DTGSSN
Sbjct: 69 LRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNF 101
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 56 GHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-KNVYCSNC 114
+S + N+ D G+I+FGGVD K+ G + PV+ + + S+++ K + N
Sbjct: 154 AYSLYLNSPDSATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTDNV 213
Query: 115 QAIADTGTSL 124
+ D+GT++
Sbjct: 214 DVLLDSGTTI 223
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 6 QAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSV 49
Q Y I++G+ Q+ VI DTGSS+LW+P +NI C V
Sbjct: 11 QVTYAADITVGSNNQKLNVIVDTGSSDLWVPD-----VNIDCQV 49
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 56 GHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-KNVYCSNC 114
+S + N+ D G+I+FGGVD K+ G + PV+ + + S+++ K + N
Sbjct: 154 AYSLYLNSPDAATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTDNV 213
Query: 115 QAIADTGTSL 124
+ D+GT++
Sbjct: 214 DVLLDSGTTI 223
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 5/44 (11%)
Query: 6 QAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSV 49
Q Y I++G+ Q+ VI DTGSS+LW+P +N+ C V
Sbjct: 11 QVTYAADITVGSNNQKLNVIVDTGSSDLWVPD-----VNVDCQV 49
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 6/71 (8%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 187 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 246
Query: 122 TSLIIGPSKVI 132
T+ + P KV
Sbjct: 247 TTNLRLPKKVF 257
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 30 YYVEMTVGSPPQTLNILVDTGSSNF 54
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 56 GHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIK-IEKNVYCSNC 114
+S + N+ + G+I+FGGVDK K+ G + PV+ + + S+K + KN+ N
Sbjct: 154 AYSLYLNSPNAATGQIIFGGVDKAKYSGSLIAVPVTSDRELRITLNSLKAVGKNI-NGNI 212
Query: 115 QAIADTGTSL 124
+ D+GT++
Sbjct: 213 DVLLDSGTTI 222
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNLWIP 36
Y I++G+ Q+F VI DTGSS+LW+P
Sbjct: 14 YAADITIGSNKQKFNVIVDTGSSDLWVP 41
>pdb|1IBQ|A Chain A, Aspergillopepsin From Aspergillus Phoenicis
pdb|1IBQ|B Chain B, Aspergillopepsin From Aspergillus Phoenicis
Length = 325
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 73 FGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSNCQ-AIADTGTSLIIGPSK 130
FG +D K+ G ITY+ S +GYW F + I S+ AIADTGT+LI+ +
Sbjct: 166 FGYIDDSKYTGSITYTDADSSQGYWGFSTDGYSIGDGSSSSSGFSAIADTGTTLILLDDE 225
Query: 131 VI-AELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILG 167
++ A ++ GA V + D +P+ +++G
Sbjct: 226 IVSAYYEQVSGAQESYEAGGYVFSCSTD-LPDFTVVIG 262
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 68 GGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTG 121
GG ++ GG+D + G + Y+P+ R+ Y++ + ++I +C ++I D+G
Sbjct: 191 GGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSG 250
Query: 122 TSLIIGPSKVIAELNKLIGA 141
+ + P KV K I A
Sbjct: 251 CTNLRLPKKVFEAAVKSIKA 270
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 34 YYVEMTVGSPPQTLNILVDTGSSNF 58
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 36/69 (52%)
Query: 56 GHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQ 115
+S + N+ G+I+FGGVD K+ G + PV+ + + ++K+ ++
Sbjct: 153 AYSLYLNSRQATSGQIIFGGVDNAKYSGTLIALPVTSDNELRIHLNTVKVAGQSINADVD 212
Query: 116 AIADTGTSL 124
+ D+GT++
Sbjct: 213 VLLDSGTTI 221
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 6 QAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
Q Y I++G+ Q+ V+ DTGSS+LW+P S
Sbjct: 11 QVSYASDITVGSNKQKLTVVIDTGSSDLWVPDSQVS 46
>pdb|1IZD|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase
pdb|1IZE|A Chain A, Crystal Structure Of Aspergillus Oryzae Aspartic
Proteinase Complexed With Pepstatin
Length = 323
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 73 FGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLII 126
FG D K+ G ITY+ V + +G+W F + I + + IADTGT+L++
Sbjct: 167 FGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGSDSSSDSITGIADTGTTLLL 221
>pdb|3C9X|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase
pdb|3EMY|A Chain A, Crystal Structure Of Trichoderma Reesei Aspartic
Proteinase Complexed With Pepstatin A
Length = 329
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 4 SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
S ++Y ++S+GTP Q + FDTGSS+LW+ S
Sbjct: 12 SADSEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSET 48
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 6/109 (5%)
Query: 69 GEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSNC-QAIADTGTSLII 126
G FG +D G + Y+PV + +G+W+F + N IADTGT+L++
Sbjct: 167 GSYNFGYIDTSVAKGPVAYTPVDNSQGFWEFTASGYSVGGGKLNRNSIDGIADTGTTLLL 226
Query: 127 GPSKVIAELNKLIGAVPLANGPAKV--DCDNLDKMPNVDIILGGKNFTL 173
V+ + + N V DCD + +P+ +G T+
Sbjct: 227 LDDNVVDAYYANVQSAQYDNQQEGVVFDCD--EDLPSFSFGVGSSTITI 273
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 10 YGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
+G LG Q+F +F T SSN+W+PS C+
Sbjct: 140 FGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT 171
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 52/127 (40%), Gaps = 22/127 (17%)
Query: 57 HSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQ------FGVESIKIEKNVY 110
+S + ++N G + GG+++ F G + Y ++ WQ FG NV
Sbjct: 277 YSIYLPPENKNKGYLTIGGIEERFFDGPLNYEKLNHDLMWQVDLDVHFG--------NVS 328
Query: 111 CSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGP----AKVDCDNLDKMPNVDIIL 166
I D+ TS+I P++ N+ + + + P C N K+P ++
Sbjct: 329 SKKANVILDSATSVITVPTEF---FNQFVESASVFKVPFLSLYVTTCGN-TKLPTLEYRS 384
Query: 167 GGKNFTL 173
K +TL
Sbjct: 385 PNKVYTL 391
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 10 YGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
+G LG Q+F +F T SSN+W+PS C+
Sbjct: 21 FGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT 52
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 57 HSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQA 116
+S + ++N G + GG+++ F G + Y ++ WQ ++ NV
Sbjct: 158 YSIYLPPENKNKGYLTIGGIEERFFDGPLNYEKLNHDLMWQVDLDVHF--GNVSSKKANV 215
Query: 117 IADTGTSLIIGPSKVIAEL 135
I D+ TS+I P++ +
Sbjct: 216 ILDSATSVITVPTEFFNQF 234
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|D Chain D, Native Cardosin A From Cynara Cardunculus L
Length = 87
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 150 KVDCDNLDKMPNVDIILGGKNFTLT 174
+VDC+ L MPNV +GGK F LT
Sbjct: 4 QVDCNTLSSMPNVSFTIGGKKFGLT 28
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNL 33
YY +++G+PPQ ++ DTGSSN
Sbjct: 20 YYVEMTVGSPPQTLNILVDTGSSNF 44
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 77 DKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNC------QAIADTGTSLIIGPSK 130
D + G + Y+P+ R+ Y++ + ++I +C ++I D+GT+ + P K
Sbjct: 172 DHSLYTGSLWYTPIRREWYYEVIIVRVEINGQDLKMDCKEYNYDKSIVDSGTTNLRLPKK 231
Query: 131 VIAELNKLIGA 141
V K I A
Sbjct: 232 VFEAAVKSIKA 242
>pdb|3HRI|A Chain A, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|B Chain B, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|C Chain C, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|D Chain D, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|E Chain E, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
pdb|3HRI|F Chain F, Histidyl-Trna Synthetase (Apo) From Trypanosoma Brucei
Length = 456
Score = 30.4 bits (67), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 10/84 (11%)
Query: 92 RKGYWQF-----GVESIKIEKNVYCSNCQAIADTGTS-----LIIGPSKVIAELNKLIGA 141
R+ ++Q+ GV+S+ E + C+ C A+ G S + I K++ + + G
Sbjct: 143 RREHYQWNMDIIGVKSVSSEVELVCAACTAMQSLGLSSKDVGVKINSRKILQTVVEQAGV 202
Query: 142 VPLANGPAKVDCDNLDKMPNVDII 165
P V D ++K+P +++
Sbjct: 203 SADKFAPVCVIVDKMEKLPREEVV 226
>pdb|3HRK|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3HRK|B Chain B, Histidyl-Trna Synthetase From Trypanosoma Cruzi
(Histidyl-Adenylate Complex)
pdb|3LC0|A Chain A, Histidyl-Trna Synthetase From Trypanosoma Cruzi (Histidine
Complex)
Length = 456
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 92 RKGYWQF-----GVESIKIEKNVYCSNCQAIADTGTS-----LIIGPSKVIAELNKLIGA 141
R+ ++Q+ GV+S+ E + C+ C A+ G S + + KV+ + + G
Sbjct: 143 RREHYQWNMDIVGVKSVSAEVELVCAACWAMRSLGLSSKDVGIKVNSRKVLQTVVEQAGV 202
Query: 142 VPLANGPAKVDCDNLDKMPNVDI 164
P V D ++K+P ++
Sbjct: 203 TSDKFAPVCVIVDKMEKIPREEV 225
>pdb|2ZXE|B Chain B, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
Length = 305
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 108 NVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVP 143
++ NC + DT G V+A+LN++IG P
Sbjct: 154 RMWLKNCSGLDDTTYGYAEGKPCVVAKLNRIIGFYP 189
>pdb|3A3Y|B Chain B, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 305
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 108 NVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVP 143
++ NC + DT G V+A+LN++IG P
Sbjct: 154 RMWLKNCSGLDDTTYGYAEGKPCVVAKLNRIIGFYP 189
>pdb|2X3H|A Chain A, Coliphage K5a Lyase
pdb|2X3H|B Chain B, Coliphage K5a Lyase
pdb|2X3H|C Chain C, Coliphage K5a Lyase
Length = 542
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 93 KGYWQFGVESIK------IEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLAN 146
K Y QFG +K I NV ++CQ + GT I PS N LI V +AN
Sbjct: 234 KNYPQFGAVELKGTASYNIVSNVIGADCQHVTYNGTEGPIAPS------NNLIKGV-MAN 286
Query: 147 GP 148
P
Sbjct: 287 NP 288
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 26.9 bits (58), Expect = 5.4, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 9 YYGTISLGTPPQEFKVIFDTGSSNLW 34
YY S TP Q +K TG S LW
Sbjct: 378 YYVFTSFTTPRQIYKTSVSTGKSELW 403
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,860,856
Number of Sequences: 62578
Number of extensions: 246866
Number of successful extensions: 752
Number of sequences better than 100.0: 125
Number of HSP's better than 100.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 237
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)