RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3212
(177 letters)
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A
{Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Length = 241
Score = 155 bits (395), Expect = 3e-48
Identities = 44/116 (37%), Positives = 69/116 (59%), Gaps = 2/116 (1%)
Query: 61 RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAIA 118
R+ + GGE+M GG D + G ++Y V+RK YWQ ++ +++ + C+AI
Sbjct: 66 RDPDAQPGGELMLGGTDSKYYKGSLSYLNVTRKAYWQVHLDQVEVASGLTLCKEGCEAIV 125
Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
DTGTSL++GP + EL K IGAVPL G + C+ + +P + + LGGK + L+
Sbjct: 126 DTGTSLMVGPVDEVRELQKAIGAVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLS 181
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET:
BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP:
b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A*
1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Length = 329
Score = 152 bits (385), Expect = 8e-46
Identities = 47/116 (40%), Positives = 64/116 (55%), Gaps = 2/116 (1%)
Query: 61 RNASD-ENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI-EKNVYCSNCQAIA 118
+ D ENGGE FGG+D+ KF GDIT+ PV RK YW+ E I + ++ + A
Sbjct: 158 DTSKDTENGGEATFGGIDESKFKGDITWLPVRRKAYWEVKFEGIGLGDEYAELESHGAAI 217
Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
DTGTSLI PS + +N IGA G +DC+ D +P++ G NFT+
Sbjct: 218 DTGTSLITLPSGLAEMINAEIGAKKGWTGQYTLDCNTRDNLPDLIFNFNGYNFTIG 273
Score = 86.9 bits (216), Expect = 4e-21
Identities = 28/42 (66%), Positives = 32/42 (76%), Gaps = 2/42 (4%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACS 48
AQYY I+LGTPPQ FKVI DTGSSNLW+PS C ++AC
Sbjct: 13 AQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECG--SLACF 52
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2
PDB: 1avf_A
Length = 329
Score = 149 bits (379), Expect = 5e-45
Identities = 42/119 (35%), Positives = 67/119 (56%), Gaps = 3/119 (2%)
Query: 59 HFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNV--YCS-NCQ 115
+ N +GG ++FGGVD + G I ++PV+++ YWQ G+E I +CS CQ
Sbjct: 154 YLSNQQGSSGGAVVFGGVDSSLYTGQIYWAPVTQELYWQIGIEEFLIGGQASGWCSEGCQ 213
Query: 116 AIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
AI DTGTSL+ P + ++ L + GA G V+C+++ +P++ I+ G F L
Sbjct: 214 AIVDTGTSLLTVPQQYMSALLQATGAQEDEYGQFLVNCNSIQNLPSLTFIINGVEFPLP 272
Score = 87.3 bits (217), Expect = 3e-21
Identities = 29/55 (52%), Positives = 36/55 (65%), Gaps = 9/55 (16%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
A Y+G IS+GTPPQ F V+FDTGSSNLW+PS +C + AC+ HS F
Sbjct: 12 AAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQ--SQACT-------SHSRFN 57
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG;
1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Length = 330
Score = 149 bits (378), Expect = 8e-45
Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 61 RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCS-NCQAIAD 119
R E+ GEI+FGG D G+ TY P+ W+F ++ +KI QAI D
Sbjct: 160 RFQDGEHFGEIIFGGSDWKYVDGEFTYVPLVGDDSWKFRLDGVKIGDTTVAPAGTQAIID 219
Query: 120 TGTSLIIGPSKVIAELNKLIGAVPLA---NGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
T ++I+GP + +N+ IG V K+DC + +P+V ++ G+NF ++
Sbjct: 220 TSKAIIVGPKAYVNPINEAIGCVVEKTTTRRICKLDCSKIPSLPDVTFVINGRNFNIS 277
Score = 79.7 bits (197), Expect = 2e-18
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 11/58 (18%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNAS 64
QY G +G Q F +FD+ S N+ + SQ C C + +
Sbjct: 17 TQYAGITKIGN--QNFLTVFDSTSCNVVVASQECVGGACVC---------PNLQKYEK 63
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus
morhua} SCOP: b.50.1.2
Length = 324
Score = 147 bits (373), Expect = 4e-44
Identities = 38/114 (33%), Positives = 58/114 (50%), Gaps = 2/114 (1%)
Query: 62 NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-KNVYCSNCQAIADT 120
+ NG E+M GGVD + G I + PV+ + YWQ ++ I + + C CQAI DT
Sbjct: 156 SGGGANGSEVMLGGVDNSHYTGSIHWIPVTAEKYWQVALDGITVNGQTAACEGCQAIVDT 215
Query: 121 GTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
GTS I+ P +A + K IGA G +C ++ +P++ + G L
Sbjct: 216 GTSKIVAPVSALANIMKDIGASE-NQGEMMGNCASVQSLPDITFTINGVKQPLP 268
Score = 87.3 bits (217), Expect = 3e-21
Identities = 31/55 (56%), Positives = 37/55 (67%), Gaps = 9/55 (16%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
+YYG IS+GTPP+ FKVIFDTGSSNLW+ S HCS ACS H+ F+
Sbjct: 12 TEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCS--AQACS-------NHNKFK 57
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP:
b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Length = 323
Score = 147 bits (373), Expect = 5e-44
Identities = 42/117 (35%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 60 FRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAI 117
+ + G +D + G + + PV+ + YWQF V+S+ I V CQAI
Sbjct: 155 VYMDRNGQESMLTLGAIDPSYYTGSLHWVPVTVQQYWQFTVDSVTISGVVVACEGGCQAI 214
Query: 118 ADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
DTGTS ++GPS I + + IGA G +DCDNL MP V + GK + LT
Sbjct: 215 LDTGTSKLVGPSSDILNIQQAIGATQNQYGEFDIDCDNLSYMPTVVFEINGKMYPLT 271
Score = 88.1 bits (219), Expect = 2e-21
Identities = 27/55 (49%), Positives = 34/55 (61%), Gaps = 9/55 (16%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
+QY+G I LGTPPQEF V+FDTGSS+ W+PS +C + AC H F
Sbjct: 14 SQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCK--SNACK-------NHQRFD 59
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa}
SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A*
1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E*
3utl_A
Length = 370
Score = 147 bits (373), Expect = 1e-43
Identities = 38/115 (33%), Positives = 68/115 (59%), Gaps = 2/115 (1%)
Query: 62 NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC--SNCQAIAD 119
+++D++G ++ GG+D + G + + PVS +GYWQ ++SI ++ CQAI D
Sbjct: 200 SSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVEGYWQITLDSITMDGETIACSGGCQAIVD 259
Query: 120 TGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
TGTSL+ GP+ IA + IGA ++G + C ++D +P++ + G + L+
Sbjct: 260 TGTSLLTGPTSAIANIQSDIGASENSDGEMVISCSSIDSLPDIVFTIDGVQYPLS 314
Score = 79.7 bits (197), Expect = 3e-18
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 9/61 (14%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHF 60
+ + +Y+GTI +GTP Q+F VIFDTGSSNLW+PS +CS ++ACS H+ F
Sbjct: 50 LENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCS--SLACS-------DHNQF 100
Query: 61 R 61
Sbjct: 101 N 101
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate;
2.35A {Homo sapiens}
Length = 351
Score = 145 bits (368), Expect = 5e-43
Identities = 48/116 (41%), Positives = 70/116 (60%), Gaps = 3/116 (2%)
Query: 61 RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-KNVYCS-NCQAIA 118
N G E++FGG D F G + + PV+++ YWQ +++I++ ++CS CQAI
Sbjct: 168 SNPEGGAGSELIFGGYDHSHFSGSLNWVPVTKQAYWQIALDNIQVGGTVMFCSEGCQAIV 227
Query: 119 DTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
DTGTSLI GPS I +L IGA P +G V+C NL+ MP+V + G +TL+
Sbjct: 228 DTGTSLITGPSDKIKQLQNAIGAAP-VDGEYAVECANLNVMPDVTFTINGVPYTLS 282
Score = 87.8 bits (218), Expect = 3e-21
Identities = 29/55 (52%), Positives = 38/55 (69%), Gaps = 9/55 (16%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
+Y+GTIS+G+PPQ F VIFDTGSSNLW+PS +C+ + AC HS F+
Sbjct: 23 MEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCT--SPACK-------THSRFQ 68
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl
protease, glycoprotein, hydrolase, signal, zymogen; HET:
IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB:
1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A*
1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A*
2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Length = 453
Score = 146 bits (370), Expect = 1e-42
Identities = 25/113 (22%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
Query: 62 NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTG 121
D++ G + GG+++ + G +TY ++ YWQ +++ N+ I D+G
Sbjct: 283 PVHDKHTGFLTIGGIEERFYEGPLTYEKLNHDLYWQITLDAHVG--NIMLEKANCIVDSG 340
Query: 122 TSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
TS I P+ + ++ + + + + P V N K+P + +TL
Sbjct: 341 TSAITVPTDFLNKMLQNLDVIKVPFLPFYVTLCNNSKLPTFEFTSENGKYTLE 393
Score = 88.7 bits (220), Expect = 3e-21
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
+YG +G Q F I DTGS+NLW+PS C+ C +
Sbjct: 138 IMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCT--TAGCL-------TKHLYD 183
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex,
vasoconstrictor, glycoprotein, hypertension, serpins;
4.33A {Homo sapiens}
Length = 383
Score = 144 bits (364), Expect = 3e-42
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 58 SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-KNVYCSN-CQ 115
+ S GG+I+ GG D + G+ Y + + G WQ ++ + + + C + C
Sbjct: 206 NRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCL 265
Query: 116 AIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
A+ DTG S I G + I +L + +GA V C+ +P++ LGGK +TLT
Sbjct: 266 ALVDTGASYISGSTSSIEKLMEALGAKKRLFD-YVVKCNEGPTLPDISFHLGGKEYTLT 323
Score = 89.4 bits (222), Expect = 1e-21
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 5 YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
QYYG I +GTPPQ FKV+FDTGSSN+W+PS CS L AC H F
Sbjct: 59 MDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACV-------YHKLFD 108
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase;
2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Length = 375
Score = 144 bits (364), Expect = 3e-42
Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 2/113 (1%)
Query: 62 NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTG 121
D + G + GG+++ + G+ITY ++ YWQ ++ I D+G
Sbjct: 207 PVHDVHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLDVHFG--KQTMEKANVIVDSG 264
Query: 122 TSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
T+ I PS+ + + + + + P V + +MP ++ +TL
Sbjct: 265 TTTITAPSEFLNKFFANLNVIKVPFLPFYVTTCDNKEMPTLEFKSANNTYTLE 317
Score = 88.2 bits (219), Expect = 2e-21
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
+YG +G Q+F +IFDTGS+NLW+PS+ C+ + CS + +
Sbjct: 62 IMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCN--SSGCS-------IKNLYD 107
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus
microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E*
5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Length = 325
Score = 142 bits (359), Expect = 6e-42
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 59 HFRNASDENGGEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSNCQAI 117
+ A + GGE +FGG D KF G +T P+ + +G+W V+ + + S+ I
Sbjct: 157 YLGKAKNGGGGEYIFGGYDSTKFKGSLTTVPIDNSRGWWGITVDRATVGTSTVASSFDGI 216
Query: 118 ADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
DTGT+L+I P+ + A + + GA +G + CD + + G +F ++
Sbjct: 217 LDTGTTLLILPNNIAASVARAYGASDNGDGTYTISCDT-SAFKPLVFSINGASFQVS 272
Score = 83.5 bits (207), Expect = 7e-20
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 10/55 (18%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
+YYG +++GTP ++F + FDTGSS+LWI S C+ S G + +
Sbjct: 15 IEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCT---NCGS-------GQTKYD 59
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage
on PAIR of basic residues, disease mutation, disulfide
bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo
sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A*
1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A*
2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A*
3oot_A* ...
Length = 341
Score = 142 bits (360), Expect = 6e-42
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 3/119 (2%)
Query: 58 SHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIE-KNVYCSN-CQ 115
+ S GG+I+ GG D + G+ Y + + G WQ ++ + + + C + C
Sbjct: 163 NRDSENSQSLGGQIVLGGSDPQHYEGNFHYINLIKTGVWQIQMKGVSVGSSTLLCEDGCL 222
Query: 116 AIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
A+ DTG S I G + I +L + +GA V C+ +P++ LGGK +TLT
Sbjct: 223 ALVDTGASYISGSTSSIEKLMEALGAKKRLFD-YVVKCNEGPTLPDISFHLGGKEYTLT 280
Score = 92.0 bits (229), Expect = 7e-23
Identities = 28/42 (66%), Positives = 32/42 (76%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACS 48
QYYG I +GTPPQ FKV+FDTGSSN+W+PS CS L AC
Sbjct: 18 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACV 59
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease,
virulence factor, H; HET: STA; 1.85A {Candida
parapsilosis} PDB: 3tne_A*
Length = 339
Score = 139 bits (351), Expect = 1e-40
Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 4/117 (3%)
Query: 62 NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTG 121
N+ G I+FGGVD K+ G + V+ + S+ ++ + + A+ D+G
Sbjct: 163 NSPSAETGTIIFGGVDNAKYSGKLVAEQVTSSQALTISLASVNLKGSSFSFGDGALLDSG 222
Query: 122 TSLIIGPSKVIAELNKLIGAVPLANGPAK----VDCDNLDKMPNVDIILGGKNFTLT 174
T+L PS A+L GA + + +DC+ V G T+
Sbjct: 223 TTLTYFPSDFAAQLADKAGARLVQVARDQYLYFIDCNTDTSGTTVFNFGNGAKITVP 279
Score = 77.0 bits (190), Expect = 2e-17
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 5 YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC-SILNIACS 48
Y +S+G+ Q+ VI DTGSS+ W+ + + C
Sbjct: 10 EGPSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCK 54
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl
protease, hydrolase; 1.70A {Trichoderma reesei} PDB:
3c9y_A* 3emy_A*
Length = 329
Score = 138 bits (350), Expect = 1e-40
Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 64 SDENGGEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSN-CQAIADTG 121
G FG +D G + Y+PV + +G+W+F + N IADTG
Sbjct: 162 RHGQNGSYNFGYIDTSVAKGPVAYTPVDNSQGFWEFTASGYSVGGGKLNRNSIDGIADTG 221
Query: 122 TSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
T+L++ V+ + + N V D + +P+ +G T+
Sbjct: 222 TTLLLLDDNVVDAYYANVQSAQYDNQQEGVVFDCDEDLPSFSFGVGSSTITIP 274
Score = 83.1 bits (206), Expect = 1e-19
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 24/95 (25%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNAS-- 64
++Y ++S+GTP Q + FDTGSS+LW+ S + + GH+ + +
Sbjct: 15 SEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETP--KSSAT-------GHAIYTPSKSS 65
Query: 65 ---DENG---------GEIMFGGVDKDKF-VGDIT 86
+G G G V DK +G +
Sbjct: 66 TSKKVSGASWSISYGDGSSSSGDVYTDKVTIGGFS 100
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A
{Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A*
3fnu_A*
Length = 451
Score = 140 bits (354), Expect = 3e-40
Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 62 NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTG 121
++N G + GG+++ F G + Y ++ WQ ++ NV I D+
Sbjct: 282 PPENKNKGYLTIGGIEERFFDGPLNYEKLNHDLMWQVDLDVHFG--NVSSKKANVILDSA 339
Query: 122 TSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
TS+I P++ + + + V K+P ++ K +TL
Sbjct: 340 TSVITVPTEFFNQFVESASVFKVPFLSLYVTTCGNTKLPTLEYRSPNKVYTLE 392
Score = 88.7 bits (220), Expect = 3e-21
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 9/55 (16%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
+G LG Q+F +F T SSN+W+PS C+ + +C +H+
Sbjct: 137 VLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCT--SESCE-------SKNHYD 182
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex;
HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Length = 340
Score = 137 bits (348), Expect = 3e-40
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Query: 61 RNASDENGGEIMFGGVDKDKFVGDITYSPVSR----KGYWQFGVESIKIEKNVYCSNCQA 116
+ GE+ FG D K+ G ITY+P++ YW S+
Sbjct: 150 TTSESSTNGELTFGATDSSKYTGSITYTPITSTSPASAYWGINQSIRYGSSTSILSSTAG 209
Query: 117 IADTGTSLIIGPSKVIAELNKLIGAVPLA-NGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
I DTGT+L + S A+ K GAV G ++ + ++ +GG+ F LT
Sbjct: 210 IVDTGTTLTLIASDAFAKYKKATGAVADNNTGLLRLTTAQYANLQSLFFTIGGQTFELT 268
Score = 83.9 bits (208), Expect = 7e-20
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 5 YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
Y + +G+P + ++ DTGSSN W+ +
Sbjct: 10 QLVDYVVNVGVGSPATTYSLLVDTGSSNTWLGADKSY 46
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET:
MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB:
1ize_A*
Length = 323
Score = 136 bits (344), Expect = 8e-40
Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 1/112 (0%)
Query: 64 SDENGGEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSNCQAIADTGT 122
G FG D K+ G ITY+ V + +G+W F + I + + IADTGT
Sbjct: 158 KHNAPGVYDFGYTDSSKYTGSITYTDVDNSQGFWGFTADGYSIGSDSSSDSITGIADTGT 217
Query: 123 SLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
+L++ ++ + + + + +P+ + +G T+
Sbjct: 218 TLLLLDDSIVDAYYEQVNGASYDSSQGGYVFPSSASLPDFSVTIGDYTATVP 269
Score = 70.7 bits (174), Expect = 4e-15
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 24/96 (25%)
Query: 4 SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNA 63
S +Y +++G + FDTGS++LW+ S + S GH ++
Sbjct: 12 SNDEEYITQVTVGD--DTLGLDFDTGSADLWVFSSQTP--SSERS-------GHDYYTPG 60
Query: 64 S---DENG---------GEIMFGGVDKDKF-VGDIT 86
S +G G G V KDK VG ++
Sbjct: 61 SSAQKIDGATWSISYGDGSSASGDVYKDKVTVGGVS 96
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic
protease, SAPT1, hydrolase; 1.80A {Candida tropicalis}
SCOP: b.50.1.2
Length = 334
Score = 132 bits (333), Expect = 5e-38
Identities = 26/114 (22%), Positives = 51/114 (44%), Gaps = 2/114 (1%)
Query: 62 NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTG 121
N+ D + G+I+FGGVD K+ G +T PV+ + + SI + +N + D+G
Sbjct: 161 NSEDASTGKIIFGGVDNAKYTGTLTALPVTSSVELRVHLGSINFDGTSVSTNADVVLDSG 220
Query: 122 TSLIIGPSKVIAELNKLIGAVPLA-NGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
T++ + +++GA + N ++ +L + G T+
Sbjct: 221 TTITYFSQSTADKFARIVGATWDSRNEIYRLPSCDLSGDAVFNFD-QGVKITVP 273
Score = 77.4 bits (191), Expect = 1e-17
Identities = 13/57 (22%), Positives = 20/57 (35%)
Query: 5 YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
Y I +G+ Q+ V+ DTGSS+LW+ + F
Sbjct: 10 EGPSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFD 66
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic
resolution, succinimide, anisotropic refinement; HET:
SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB:
1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A*
2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A*
1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Length = 329
Score = 131 bits (331), Expect = 9e-38
Identities = 25/115 (21%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 64 SDENGGEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCS-NCQAIADTG 121
G FG +D + G ITY+ V +++G+W++ + + S + IADTG
Sbjct: 161 GYHAPGTYNFGFIDTTAYTGSITYTAVSTKQGFWEWTSTGYAVGSGTFKSTSIDGIADTG 220
Query: 122 TSLIIGPSKVIAELNKLIGAVPLAN--GPAKVDCDNLDKMPNVDIILGGKNFTLT 174
T+L+ P+ V++ + ++ G C +P+ +G +
Sbjct: 221 TTLLYLPATVVSAYWAQVSGAKSSSSVGGYVFPCSA--TLPSFTFGVGSARIVIP 273
Score = 80.4 bits (199), Expect = 1e-18
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSI 42
Y + +GTP Q + FDTGSS+LW+ S +
Sbjct: 15 DAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETTA 50
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of
basic residues, glycoprotein, protease, secreted; HET:
STA; 2.50A {Candida albicans}
Length = 342
Score = 130 bits (329), Expect = 2e-37
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 8/118 (6%)
Query: 62 NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTG 121
N+++ + G+I+FGG+DK K+ G + P++ + G+ S+ + +N + D+G
Sbjct: 161 NSAEASTGQIIFGGIDKAKYSGSLVDLPITSEKKLTVGLRSVNVRGRNVDANTNVLLDSG 220
Query: 122 TSLIIGPSKVIAELNKLIGAVPL----ANGPAKVDCDNLDKMPNVDI-ILGGKNFTLT 174
T++ ++ + IGA N DC +D ++
Sbjct: 221 TTISYFTRSIVRNILYAIGAQMKFDSAGNKVYVADC---KTSGTIDFQFGNNLKISVP 275
Score = 72.8 bits (179), Expect = 7e-16
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 5 YQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHF 60
Y I++G+ Q+ VI DTGSS+LWIP + + D +
Sbjct: 10 EAITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSY 65
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A
{Aspergillus phoenicis} SCOP: b.50.1.2
Length = 325
Score = 127 bits (321), Expect = 2e-36
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 6/115 (5%)
Query: 64 SDENGGEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCS-NCQAIADTG 121
+ G FG +D K+ G ITY+ S +GYW F + I S AIADTG
Sbjct: 157 KHDAPGVYDFGYIDDSKYTGSITYTDADSSQGYWGFSTDGYSIGDGSSSSSGFSAIADTG 216
Query: 122 TSLIIGPSKVIAELNKLIGAVPLA--NGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
T+LI+ ++++ + + + G C +P+ +++G +
Sbjct: 217 TTLILLDDEIVSAYYEQVSGAQESYEAGGYVFSCST--DLPDFTVVIGDYKAVVP 269
Score = 70.0 bits (172), Expect = 6e-15
Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 26/97 (26%)
Query: 4 SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNA 63
+ +Y +++G + FDTGS++LW+ S + + GH +
Sbjct: 11 NNDEEYLTPVTVGK--STLHLDFDTGSADLWVFSDELP--SSEQT-------GHDLY-TP 58
Query: 64 SD----ENG---------GEIMFGGVDKDKF-VGDIT 86
S +G G G V +D VG +T
Sbjct: 59 SSSATKLSGYSWDISYGDGSSASGDVYRDTVTVGGVT 95
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO;
3.10A {Homo sapiens}
Length = 383
Score = 128 bits (323), Expect = 3e-36
Identities = 29/137 (21%), Positives = 54/137 (39%), Gaps = 18/137 (13%)
Query: 56 GHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYC---- 111
G S NGG ++ GG++ + GDI Y+P+ + Y+Q + ++I
Sbjct: 157 GAGLPVAGSGTNGGSLVLGGIEPSLYKGDIWYTPIKEEWYYQIEILKLEIGGQSLNLDCR 216
Query: 112 --SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAK------------VDCDNLD 157
+ +AI D+GT+L+ P KV + + + L +
Sbjct: 217 EYNADKAIVDSGTTLLRLPQKVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETPWS 276
Query: 158 KMPNVDIILGGKNFTLT 174
P + I L +N + +
Sbjct: 277 YFPKISIYLRDENSSRS 293
Score = 82.6 bits (204), Expect = 3e-19
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
YY + +GTPPQ+ +++ DTGSSN +
Sbjct: 13 RGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPH 46
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A
3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Length = 342
Score = 126 bits (319), Expect = 6e-36
Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 9/119 (7%)
Query: 62 NASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCS-NCQAIADT 120
N+ D G+I+FGGVD K+ G + PV+ + + S+++ + N + D+
Sbjct: 160 NSPDAATGQIIFGGVDNAKYSGSLIALPVTSDRELRISLGSVEVSGKTINTDNVDVLLDS 219
Query: 121 GTSLIIGPSKVIAELNKLIGAVPLA----NGPAKVDCDNLDKMPNVDI-ILGGKNFTLT 174
GT++ + ++ K N +VDC + +V ++
Sbjct: 220 GTTITYLQQDLADQIIKAFNGKLTQDSNGNSFYEVDC---NLSGDVVFNFSKNAKISVP 275
Score = 77.4 bits (191), Expect = 2e-17
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 4 SYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHF 60
+ Q Y I++G+ Q+ VI DTGSS+LW+P + D +
Sbjct: 9 NEQVTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTY 65
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors,
macrocycle; HET: MAN PP7; 0.95A {Penicillium
janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E*
1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A*
2web_A* 2wec_A* 2wed_A* 3app_A
Length = 323
Score = 125 bits (317), Expect = 9e-36
Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 64 SDENGGEIMFGGVDKDKFVGDITYSPV-SRKGYWQFGVESIKIEKNVYCSNCQAIADTGT 122
+ G FG +D K+ G +TY+ V + +G+W F V+S + IADTGT
Sbjct: 158 KHQQPGVYDFGFIDSSKYTGSLTYTGVDNSQGFWSFNVDSYTA-GSQSGDGFSGIADTGT 216
Query: 123 SLIIGPSKVIAELNKLIGAVPLANGPA--KVDCDNLDKMPNVDIILGGKNFTLT 174
+L++ V+++ + + DC +P+ + + G T+
Sbjct: 217 TLLLLDDSVVSQYYSQVSGAQQDSNAGGYVFDCST--NLPDFSVSISGYTATVP 268
Score = 69.6 bits (171), Expect = 8e-15
Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 26/94 (27%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASD- 65
+Y +++G + FDTGS++LW+ S S GHS + N S
Sbjct: 15 EEYITPVTIGG--TTLNLNFDTGSADLWVFSTELP--ASQQS-------GHSVY-NPSAT 62
Query: 66 ---ENG---------GEIMFGGVDKDKF-VGDIT 86
+G G G V D VG +T
Sbjct: 63 GKELSGYTWSISYGDGSSASGNVFTDSVTVGGVT 96
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC
BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Length = 239
Score = 122 bits (308), Expect = 3e-35
Identities = 39/84 (46%), Positives = 58/84 (69%), Gaps = 3/84 (3%)
Query: 61 RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKI--EKNVYCS-NCQAI 117
RN +E GGE++FGG+D + F GD TY PV+ + YWQFG+ + I + +C+ CQA
Sbjct: 155 RNVDEEEGGELVFGGLDPNHFRGDHTYVPVTYQYYWQFGIGDVLIGDKSTGFCAPGCQAF 214
Query: 118 ADTGTSLIIGPSKVIAELNKLIGA 141
AD+GTSL+ GP+ ++ ++N IGA
Sbjct: 215 ADSGTSLLSGPTAIVTQINHAIGA 238
Score = 88.1 bits (219), Expect = 5e-22
Identities = 26/55 (47%), Positives = 32/55 (58%), Gaps = 8/55 (14%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
Y+G I +GTPPQ+F VIFDTGSS LW+PS C + AC HS +
Sbjct: 13 TSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCI-NSKACR-------AHSMYE 59
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET:
TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A*
3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A*
2va7_A* 2va5_A* 2va6_A*
Length = 455
Score = 124 bits (313), Expect = 2e-34
Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 18/147 (12%)
Query: 48 SVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEK 107
S+ + GG ++ GG+D + G + Y+P+ R+ Y++ + ++I
Sbjct: 213 SLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEING 272
Query: 108 NVYC------SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANG------------PA 149
+ ++I D+GT+ + P KV K I A
Sbjct: 273 QDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCW 332
Query: 150 KVDCDNLDKMPNVDIILGGKNFTLTRT 176
+ + P + + L G+ +
Sbjct: 333 QAGTTPWNIFPVISLYLMGEVTNQSFR 359
Score = 82.3 bits (203), Expect = 5e-19
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
+R YY +++G+PPQ ++ DTGSSN + +
Sbjct: 68 LRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH 107
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl
protease, glycoprotein, hydrolase, membrane,
transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo
sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A*
2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A*
3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A
2zhs_A 2zhr_A 2zhu_A ...
Length = 395
Score = 122 bits (308), Expect = 5e-34
Identities = 25/143 (17%), Positives = 51/143 (35%), Gaps = 18/143 (12%)
Query: 48 SVDKDKFVGHSHFRNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEK 107
S+ + GG ++ GG+D + G + Y+P+ R+ Y++ + ++I
Sbjct: 160 SLQLCGAGFPLNQSEVLASVGGSMIIGGIDHSLYTGSLWYTPIRREWYYEVIIVRVEING 219
Query: 108 NVYC------SNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANG------------PA 149
+ ++I D+GT+ + P KV K I A
Sbjct: 220 QDLKMDCKEYNYDKSIVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFPDGFWLGEQLVCW 279
Query: 150 KVDCDNLDKMPNVDIILGGKNFT 172
+ + P + + L G+
Sbjct: 280 QAGTTPWNIFPVISLYLMGEVTN 302
Score = 81.5 bits (201), Expect = 7e-19
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
+R YY +++G+PPQ ++ DTGSSN + +
Sbjct: 15 LRGKSGQGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH 54
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus}
SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Length = 361
Score = 119 bits (301), Expect = 3e-33
Identities = 27/123 (21%), Positives = 49/123 (39%), Gaps = 9/123 (7%)
Query: 64 SDENGGEIMFGGVDKDKFVGDITYSPVSRKG----YWQFGVESIKIE-KNVYCSN--CQA 116
+++ GG+++FGGV+ GDI Y+ V + +W V +KI+ + +
Sbjct: 175 TNDGGGQVVFGGVNNTLLGGDIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVSFDGAQAF 234
Query: 117 IADTGTSLIIGPSKVIAELNKLIGAVP-LANGPAKVDCDNL-DKMPNVDIILGGKNFTLT 174
DTGT+ I PS ++ K + V C D ++L +
Sbjct: 235 TIDTGTNFFIAPSSFAEKVVKAALPDATESQQGYTVPCSKYQDSKTTFSLVLQKSGSSSD 294
Query: 175 RTN 177
+
Sbjct: 295 TID 297
Score = 84.0 bits (208), Expect = 8e-20
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 8/55 (14%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
+Y +S+GTP Q+F ++FDTGSS+ W+P + C + C G F
Sbjct: 18 EEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCD-NSEGCV-------GKRFFD 64
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen
structure, hydrolase; 2.30A {Hordeum vulgare} SCOP:
a.64.1.2 b.50.1.2
Length = 478
Score = 113 bits (285), Expect = 3e-30
Identities = 41/104 (39%), Positives = 62/104 (59%), Gaps = 7/104 (6%)
Query: 61 RNASDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNV--YCSN-CQAI 117
R+ + GGEI+FGG+D +VG+ TY PV++KGYWQF + + + +C+ C AI
Sbjct: 198 RHVDEGEGGEIIFGGMDPKHYVGEHTYVPVTQKGYWQFDMGDVLVGGKSTGFCAGGCAAI 257
Query: 118 ADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPN 161
AD+GTSL+ GP+ +I E+N+ IG A G +C +
Sbjct: 258 ADSGTSLLAGPTAIITEINEKIG----AAGVVSQECKTIVSQYG 297
Score = 108 bits (270), Expect = 4e-28
Identities = 37/174 (21%), Positives = 63/174 (36%), Gaps = 14/174 (8%)
Query: 14 SLGTPPQEFKVIFDTGSSNLWIPSQHCSILN----------IACSVDKDKFVGHSHFRNA 63
S G I D+G+S L P+ + +N C ++
Sbjct: 246 STGFCAGGCAAIADSGTSLLAGPTAIITEINEKIGAAGVVSQECKTIVSQYGQ-QILDLL 304
Query: 64 SDENGGEIMFGGVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSN-CQAIADTGT 122
E + + V F G S R V+S + + CS A+
Sbjct: 305 LAETQPKKICSQVGLCTFDGTRGVSAGIRSVVDDEPVKSNGLRADPMCSACEMAVVWMQN 364
Query: 123 SLIIGPSK--VIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLT 174
L ++ ++ +N+L +P G + VDC +L MP+++ +GGK F L
Sbjct: 365 QLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALK 418
Score = 89.6 bits (222), Expect = 1e-21
Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 8/55 (14%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
AQY+G I +GTPPQ+F VIFDTGSSNLW+PS C +IAC HS ++
Sbjct: 52 AQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCY-FSIACY-------LHSRYK 98
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A
{Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Length = 97
Score = 80.1 bits (198), Expect = 2e-20
Identities = 31/55 (56%), Positives = 37/55 (67%), Gaps = 7/55 (12%)
Query: 7 AQYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFR 61
AQYYG I +GTPPQ F V+FDTGSSNLW+PS HC +L+IAC H +
Sbjct: 13 AQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACW-------IHHKYN 60
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein;
1.91A {Glycine max}
Length = 403
Score = 55.5 bits (133), Expect = 1e-09
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHC 40
++ + TP + V+ D ++LW+ +
Sbjct: 22 LHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQ 54
Score = 35.5 bits (81), Expect = 0.005
Identities = 23/191 (12%), Positives = 63/191 (32%), Gaps = 40/191 (20%)
Query: 19 PQEFKVIFDTGSSNLWIPSQHCSILNIACSVDKDKFVGHSHFRNASDENGGEIMFGGVDK 78
P+ + + G + + +P+Q S + + +F + + + G I+FG
Sbjct: 152 PRNTQGVAGLGHAPISLPNQLASHFGL-----QRQF---TTCLSRYPTSKGAIIFGDAPN 203
Query: 79 DKFVGD---------ITYSPVSRKGYWQFGVESIKIEKNVYCS------------NCQAI 117
+ T ++ +G + V SI+I ++ + +
Sbjct: 204 NMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTM 263
Query: 118 ADTGTSLIIGPS----KVIAELNKLIGAVPLANGPAK----VDCDNLDKMPNVDIIL--- 166
T T ++ + + A + + ++ P+VD+++
Sbjct: 264 ISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSNKINAYPSVDLVMDKP 323
Query: 167 GGKNFTLTRTN 177
G + ++ +
Sbjct: 324 NGPVWRISGED 334
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A
{Daucus carota} PDB: 3vlb_A
Length = 413
Score = 48.3 bits (114), Expect = 3e-07
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
QY TI+ TP ++ D G LW+
Sbjct: 21 QYVTTINQRTPLVSENLVVDLGGRFLWVDCDQNY 54
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC
BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Length = 87
Score = 38.4 bits (90), Expect = 1e-04
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 151 VDCDNLDKMPNVDIILGGKNFTLT 174
VDC+ L MPNV +GGK F LT
Sbjct: 5 VDCNTLSSMPNVSFTIGGKKFGLT 28
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase
inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2
PDB: 1t6g_A 2b42_A 3hd8_A
Length = 381
Score = 38.2 bits (88), Expect = 8e-04
Identities = 4/34 (11%), Positives = 7/34 (20%), Gaps = 5/34 (14%)
Query: 8 QYYGTISLGTPPQEFKVIFDTGSSNLWIPSQHCS 41
Y G ++ D +W
Sbjct: 15 LYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQ 43
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.022
Identities = 37/229 (16%), Positives = 62/229 (27%), Gaps = 96/229 (41%)
Query: 1 MRSSYQAQYYGTISLGTPPQE--FKVIFDTGSSNLWIPSQHCSILN-------------I 45
+R +Y A + TI G E FK I + +S + + +L+
Sbjct: 1684 IRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK--GLLSATQFTQPALTLMEK 1741
Query: 46 AC--------SVDKDK-FVGHS-----------------------HFR-----NA--SDE 66
A + D F GHS +R A DE
Sbjct: 1742 AAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDE 1801
Query: 67 NGGEIMFG--GVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCS----NC---Q-A 116
G +G ++ + + + Q+ VE + N Q
Sbjct: 1802 LGRS-NYGMIAINPGRVAASFSQEAL------QYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 117 IADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDII 165
A G + L+ + + N K+ +DII
Sbjct: 1855 AA--GD---------LRALDTVTNVL------------NFIKLQKIDII 1880
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 29.2 bits (65), Expect = 0.58
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 75 GVDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLI 125
G++ + + TY RK ++G E + + +C L+
Sbjct: 58 GLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGFFCRKIVEGISQPIWLV 108
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: COA; 2.40A {Shewanella oneidensis}
Length = 436
Score = 29.3 bits (66), Expect = 0.72
Identities = 13/73 (17%), Positives = 20/73 (27%), Gaps = 19/73 (26%)
Query: 85 ITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPL 144
I SP + G G+ A K+IA +N +P
Sbjct: 116 IQVSPPDKHGMCSLGIS---------VEATLAACQVAG-------KIIAHINP---QMPR 156
Query: 145 ANGPAKVDCDNLD 157
+G + D
Sbjct: 157 THGDGFIHIDRFA 169
>3bqp_A Proactivator polypeptide; saposin, sphingolipid activator protein,
lipid binding protein, acid ceramidase,farber disease,
lipid metabolism; 1.30A {Homo sapiens} PDB: 3bqq_C
2rb3_A 2r1q_A 2r0r_A
Length = 80
Score = 27.6 bits (61), Expect = 0.74
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 6/52 (11%)
Query: 108 NVYCSNCQAIADTGTSLIIGPS---KVIAELNKLIGAVPLANGPAKVDCDNL 156
+C C+ + + S +++A L K +P P + CD
Sbjct: 2 GGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLP---DPYQKQCDQF 50
>1s7k_A Acetyl transferase; GNAT; 1.80A {Salmonella typhimurium} SCOP:
d.108.1.1 PDB: 1s7l_A* 1s7n_A* 1s7f_A 1z9u_A
Length = 182
Score = 28.4 bits (64), Expect = 0.83
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 66 ENGGEIMFGGVDKDKFVGDITYSPVSRK------GYW 96
+ G M+ +++ G ++++ + GYW
Sbjct: 66 QRGYAKMYLIFCQNEMAGVLSFNAIEPINKAAYIGYW 102
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein,
lipid-binding prote binding protein; 2.40A {Homo
sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Length = 83
Score = 27.3 bits (60), Expect = 0.91
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 6/55 (10%)
Query: 105 IEKNVYCSNCQAIADTGTSLIIGPS---KVIAELNKLIGAVPLANGPAKVDCDNL 156
++ +VYC C+ + T LI +++ +K+ +P +C +
Sbjct: 1 MDSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLP---KSLSEECQEV 52
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD;
1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Length = 448
Score = 27.8 bits (62), Expect = 1.9
Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 19/73 (26%)
Query: 85 ITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPL 144
+ SP G+ GV + V+AE+N VP+
Sbjct: 121 VMVSPPDHNGFCCVGVS---------SDYTMQAIKS-------AKIVLAEVND---QVPV 161
Query: 145 ANGPAKVDCDNLD 157
G V +D
Sbjct: 162 VYGDTFVHVSEID 174
>2qyp_A Proactivator polypeptide; saposin, activator protein, alternative
splicing, disease mutation, gaucher disease,
glycoprotein, GM2- gangliosidosis; 2.45A {Homo sapiens}
SCOP: a.64.1.1 PDB: 2z9a_A
Length = 91
Score = 26.5 bits (58), Expect = 2.5
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 6/55 (10%)
Query: 105 IEKNVYCSNCQAIADTGTSLIIGPS---KVIAELNKLIGAVPLANGPAKVDCDNL 156
+VYC C+ + T LI +++ +K+ +P +C +
Sbjct: 2 YVSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLP---KSLSEECQEV 53
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 2.8
Identities = 8/49 (16%), Positives = 16/49 (32%), Gaps = 18/49 (36%)
Query: 1 MRSSYQAQYYGTISLGTPPQEFK------VIFDTGSSNLWIPSQHCSIL 43
+ SS P E++ +F + IP+ S++
Sbjct: 359 IESSLNVL---------EPAEYRKMFDRLSVFP---PSAHIPTILLSLI 395
>3c9f_A 5'-nucleotidase; 2',3'-cyclic phosphodiesterase, protein STR
initiative, PSI-2, NEW YORK SGX research center for
structu genomics, nysgxrc; 1.90A {Candida albicans}
SCOP: d.114.1.1 d.159.1.2
Length = 557
Score = 27.3 bits (60), Expect = 2.8
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 10/98 (10%)
Query: 56 GHSHFRNASDENGGEIMFGGVDKDKFVG----DITYSPVSRKGYWQFGVESIKIEKNVYC 111
GHSH R+ + + + VG ++ + ++ +F I + +
Sbjct: 237 GHSHIRDFTVFDSLSTGLQSGRYCETVGWTSVNLDKADLNLPVRQRFSRSYIDFNTDSFK 296
Query: 112 SNCQAIADTGTSLIIGPSKVIAE------LNKLIGAVP 143
+ + T+ SK+I E L+ LIG V
Sbjct: 297 YHTNLDKEFDTAKGKLVSKLIRETRKELKLDTLIGYVK 334
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 1.90A
{Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Length = 307
Score = 27.1 bits (60), Expect = 3.5
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 134 ELNKLIGAVPLANGPAKVDCDNLDKMPNVDI 164
E+ +G L N +VD N D ++I
Sbjct: 126 EIQAKVGEYILNNENCEVDLKNYDIEIGIEI 156
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+,
K+-ATPase, P-type ATPase, membrane protein, hydrolase,
aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB:
2xzb_B
Length = 290
Score = 26.9 bits (59), Expect = 3.5
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 111 CSNCQAIADTGTSLIIGPSKVIAELNKLIGAVPLANGPAKVDCDNLDK 158
NC D G I ++N+++ +P + +VDC LD+
Sbjct: 159 LQNCSGRPDPTFGFAEGKPCFIIKMNRIVKFLPGNSTAPRVDCAFLDQ 206
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest
center for structural genomics, MCSG, structural
genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2
c.124.1.2
Length = 509
Score = 27.2 bits (60), Expect = 3.5
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 130 KVIAELNKLIGAVPLANGPAKVDCDNLDKMPNVDIIL 166
V+ + V N PA + D +D + VD +
Sbjct: 199 CVVLLTEEW---VEFPNYPASIAQDQVDLIVQVDEVG 232
>2kyy_A Possible ATP-dependent DNA helicase RECG-related; structural
genomics, northeast structural genomics consortiu AAA_4
domain, PSI-2; NMR {Nitrosomonas europaea}
Length = 153
Score = 26.1 bits (57), Expect = 5.6
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 60 FRNASDENGGEIMFGGVDKDKFVGDITYSPV 90
F N +GG ++ G GD Y PV
Sbjct: 39 FANEPGLDGGYLLLGVDWAINDKGDTVYRPV 69
>3gqn_A Preneck appendage protein; beta helix, beta barrel, ATP binding,
viral protein; HET: ATP; 2.15A {Bacillus phage PHI29}
PDB: 3suc_A*
Length = 772
Score = 26.4 bits (57), Expect = 6.4
Identities = 15/102 (14%), Positives = 26/102 (25%)
Query: 76 VDKDKFVGDITYSPVSRKGYWQFGVESIKIEKNVYCSNCQAIADTGTSLIIGPSKVIAEL 135
++ V D+ G+ KN+ SN +I +
Sbjct: 266 INGHMSVEDVRSYNFRHIGHHAATAPQSVSAKNIVASNLVSIRPNNKRGFQDNATPRVLA 325
Query: 136 NKLIGAVPLANGPAKVDCDNLDKMPNVDIILGGKNFTLTRTN 177
V + D NL V + +N +L
Sbjct: 326 VSAYYGVVINGLTGYTDDPNLLTETVVSVQFRARNCSLNGVV 367
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 26.1 bits (58), Expect = 9.1
Identities = 8/27 (29%), Positives = 9/27 (33%), Gaps = 7/27 (25%)
Query: 7 AQYYG-------TISLGTPPQEFKVIF 26
AQY T+ TP K F
Sbjct: 418 AQYKDGTTDVTRTMHFETPTAYEKECF 444
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.414
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,748,685
Number of extensions: 155315
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's gapped: 409
Number of HSP's successfully gapped: 88
Length of query: 177
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 90
Effective length of database: 4,272,666
Effective search space: 384539940
Effective search space used: 384539940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)