BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3214
(336 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant,
Mvv
Length = 329
Score = 127 bits (319), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 78/186 (41%), Positives = 103/186 (55%), Gaps = 8/186 (4%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
+ NGT+FAI+YG+G++ GY+SQDTL IGDLTI Q F EA EPG TF KFDGILG+G
Sbjct: 66 KANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLG 125
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK---ELES 185
YD I+VD V PPFYN IQQ LL++ F FYL + + GE + K ++
Sbjct: 126 YDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEATFGGIDESKFKGDITW 185
Query: 186 RIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYA-VTLEYPGVELKSLRILNK 244
+ E G G Y E++ AI+ G + +TL E+ + I K
Sbjct: 186 LPVRRKAYWEVKFEGIGLGDEYAELESHG----AAIDTGTSLITLPSGLAEMINAEIGAK 241
Query: 245 QGPTDQ 250
+G T Q
Sbjct: 242 KGSTGQ 247
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ G NFT+ P DY L+VS C+S MD P P GP+ I+GD F+ K+Y
Sbjct: 258 LPDLIFNFNGYNFTIGPYDYTLEVS----GSCISAITPMDFPEPVGPLAIVGDAFLRKYY 313
Query: 61 TVFDMDNN 68
+++D+ NN
Sbjct: 314 SIYDLGNN 321
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A
pdb|1FQ4|A Chain A, Crystal Structure Of A Complex Between Hydroxyethylene
Inhibitor Cp- 108,420 And Yeast Aspartic Proteinase A
pdb|1FQ5|A Chain A, X-Ray Struture Of A Cyclic Statine Inhibitor Pd-129,541
Bound To Yeast Proteinase A
pdb|1FQ6|A Chain A, X-Ray Structure Of Glycol Inhibitor Pd-133,450 Bound To
Saccharopepsin
pdb|1FQ7|A Chain A, X-Ray Structure Of Inhibitor Cp-72,647 Bound To
Saccharopepsin
pdb|1FQ8|A Chain A, X-Ray Structure Of Difluorostatine Inhibitor Cp81,198
Bound To Saccharopepsin
Length = 329
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 74/104 (71%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
+ NGT+FAI+YG+G++ GY+SQDTL IGDLTI Q F EA EPG TF KFDGILG+G
Sbjct: 66 KANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLG 125
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
YD I+VD V PPFYN IQQ LL++ F FYL + + GE
Sbjct: 126 YDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEA 169
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ G NFT+ P DY L+VS C+S MD P P GP+ I+GD F+ K+Y
Sbjct: 258 LPDLIFNFNGYNFTIGPYDYTLEVS----GSCISAITPMDFPEPVGPLAIVGDAFLRKYY 313
Query: 61 TVFDMDNN 68
+++D+ NN
Sbjct: 314 SIYDIGNN 321
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant
Inhibitor
pdb|1DPJ|A Chain A, The Structure Of Proteinase A Complexed With Ia3 Peptide
Inhibitor
pdb|1FMU|A Chain A, Structure Of Native Proteinase A In P3221 Space Group.
pdb|1FMX|A Chain A, Structure Of Native Proteinase A In The Space Group P21
pdb|1FMX|B Chain B, Structure Of Native Proteinase A In The Space Group P21
Length = 329
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 74/104 (71%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
+ NGT+FAI+YG+G++ GY+SQDTL IGDLTI Q F EA EPG TF KFDGILG+G
Sbjct: 66 KANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLG 125
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
YD I+VD V PPFYN IQQ LL++ F FYL + + GE
Sbjct: 126 YDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEA 169
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ G NFT+ P DY L+VS C+S MD P P GP+ I+GD F+ K+Y
Sbjct: 258 LPDLIFNFNGYNFTIGPYDYTLEVS----GSCISAITPMDFPEPVGPLAIVGDAFLRKYY 313
Query: 61 TVFDMDNN 68
+++D+ NN
Sbjct: 314 SIYDLGNN 321
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P + + LGGK + L+P DY LKVS A ++CLSGF GMDIPPP+GP+WILGDVFIG++Y
Sbjct: 166 LPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYY 225
Query: 61 TVFDMDNNQ 69
TVFD DNN+
Sbjct: 226 TVFDRDNNR 234
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 53/66 (80%)
Query: 96 GDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVF 155
G + ++ QVFGEA K+PG TF+AAKFDGILGM Y I+V+ V P F N++QQKL+++N+F
Sbjct: 1 GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIF 60
Query: 156 GFYLNR 161
FYL+R
Sbjct: 61 SFYLSR 66
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|B Chain B, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase.
pdb|1QDM|C Chain C, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley
Vacuolar Aspartic Proteinase
Length = 478
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 70/94 (74%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
+KNG AI+YG+G+++GY S+D++ +GDL +K+Q F EA KEPG TF+ AKFDGILG+G
Sbjct: 106 KKNGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLG 165
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRY 162
+ I+V P +Y +I+Q L+ VF F+LNR+
Sbjct: 166 FKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRH 199
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 50/64 (78%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
MP+++ +GGK F L P +Y+LKV +++ C+SGF MDIPPP GP+WILGDVF+G ++
Sbjct: 403 MPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYH 462
Query: 61 TVFD 64
TVFD
Sbjct: 463 TVFD 466
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|C Chain C, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|E Chain E, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
pdb|2X0B|G Chain G, Crystal Structure Of Human Angiotensinogen Complexed With
Renin
Length = 383
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 58 KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
K + D + + NGT+ +RY +G VSG+LSQD + +G +T+ Q+FGE + P F+
Sbjct: 105 KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFM 163
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSA 177
A+FDG++GMG+ A+ V P F NII Q +L+++VF FY NR + + G +
Sbjct: 164 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGG 223
Query: 178 HDPKELE 184
DP+ E
Sbjct: 224 SDPQHYE 230
Score = 80.1 bits (196), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 43/69 (62%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ LGGK +TLT DYV + S +S +C MDIPPP GP W LG FI KFY
Sbjct: 308 LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFY 367
Query: 61 TVFDMDNNQ 69
T FD NN+
Sbjct: 368 TEFDRRNNR 376
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren
pdb|3D91|B Chain B, Human Renin In Complex With Remikiren
pdb|3G6Z|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G6Z|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G70|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3K1W|A Chain A, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3K1W|B Chain B, New Classes Of Potent And Bioavailable Human Renin
Inhibitors
pdb|3OWN|A Chain A, Potent Macrocyclic Renin Inhibitors
pdb|3OWN|B Chain B, Potent Macrocyclic Renin Inhibitors
Length = 341
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 58 KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
K + D + + NGT+ +RY +G VSG+LSQD + +G +T+ Q+FGE + P F+
Sbjct: 62 KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFM 120
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSA 177
A+FDG++GMG+ A+ V P F NII Q +L+++VF FY NR + + G +
Sbjct: 121 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGG 180
Query: 178 HDPKELE 184
DP+ E
Sbjct: 181 SDPQHYE 187
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 43/69 (62%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ LGGK +TLT DYV + S +S +C MDIPPP GP W LG FI KFY
Sbjct: 265 LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFY 324
Query: 61 TVFDMDNNQ 69
T FD NN+
Sbjct: 325 TEFDRRNNR 333
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKS|B Chain B, Crystal Structure Of Renin-Pf00074777 Complex
pdb|2BKT|A Chain A, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2BKT|B Chain B, Crystal Structure Of Renin-Pf00257567 Complex
pdb|2IKO|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKO|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IKU|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IKU|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitors
pdb|2IL2|A Chain A, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2IL2|B Chain B, Crystal Structure Of Human Renin Complexed With Inhibitor
pdb|2V0Z|C Chain C, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V0Z|O Chain O, Crystal Structure Of Renin With Inhibitor 10 (Aliskiren)
pdb|2V10|C Chain C, Crystal Structure Of Renin With Inhibitor 9
pdb|2V10|O Chain O, Crystal Structure Of Renin With Inhibitor 9
pdb|2V11|C Chain C, Crystal Structure Of Renin With Inhibitor 6
pdb|2V11|O Chain O, Crystal Structure Of Renin With Inhibitor 6
pdb|2V12|C Chain C, Crystal Structure Of Renin With Inhibitor 8
pdb|2V12|O Chain O, Crystal Structure Of Renin With Inhibitor 8
pdb|1BBS|A Chain A, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1BBS|B Chain B, X-Ray Analyses Of Peptide Inhibitor Complexes Define The
Structural Basis Of Specificity For Human And Mouse
Renins
pdb|1RNE|A Chain A, The Crystal Structure Of Recombinant Glycosylated Human
Renin Alone And In Complex With A Transition State
Analog Inhibitor
pdb|2REN|A Chain A, Structure Of Recombinant Human Renin, A Target For
Cardiovascular- Active Drugs, At 2.5 Angstroms
Resolution
pdb|2V13|A Chain A, Crystal Structure Of Renin With Inhibitor 7
pdb|2V16|C Chain C, Crystal Structure Of Renin With Inhibitor 3
pdb|2V16|O Chain O, Crystal Structure Of Renin With Inhibitor 3
pdb|3G72|A Chain A, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3G72|B Chain B, Design And Preparation Of Potent, Non-Peptidic,
Bioavailable Renin Inhibitors
pdb|3OQF|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OQF|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazine
Inhibitor Complexes
pdb|3OOT|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OOT|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|A Chain A, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3OQK|B Chain B, Crystal Structure Analysis Of Renin-Indole-Piperazin
Inhibitor Complexes
pdb|3Q3T|A Chain A, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3Q3T|B Chain B, Alkyl Amine Renin Inhibitors: Filling S1 From S3
pdb|3SFC|A Chain A, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3SFC|B Chain B, Structure-Based Optimization Of Potent 4- And
6-Azaindole-3- Carboxamides As Renin Inhibitors
pdb|3Q4B|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q4B|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|A Chain A, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3Q5H|B Chain B, Clinically Useful Alkyl Amine Renin Inhibitors
pdb|3VSW|A Chain A, Human Renin In Complex With Compound 8
pdb|3VSW|B Chain B, Human Renin In Complex With Compound 8
pdb|3VSX|A Chain A, Human Renin In Complex With Compound 18
pdb|3VSX|B Chain B, Human Renin In Complex With Compound 18
pdb|3VYD|A Chain A, Human Renin In Complex With Inhibitor 6
pdb|3VYD|B Chain B, Human Renin In Complex With Inhibitor 6
pdb|3VYE|A Chain A, Human Renin In Complex With Inhibitor 7
pdb|3VYE|B Chain B, Human Renin In Complex With Inhibitor 7
pdb|3VYF|A Chain A, Human Renin In Complex With Inhibitor 9
pdb|3VYF|B Chain B, Human Renin In Complex With Inhibitor 9
pdb|4GJ8|A Chain A, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ8|B Chain B, Crystal Structure Of Renin In Complex With Pkf909-724
(compound 3)
pdb|4GJ9|A Chain A, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJ9|B Chain B, Crystal Structure Of Renin In Complex With Gp055321
(compound 4)
pdb|4GJA|A Chain A, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJA|B Chain B, Crystal Structure Of Renin In Complex With Nvp-ayl747
(compound 5)
pdb|4GJB|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJB|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bbv031
(compound 6)
pdb|4GJC|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJC|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bch965
(compound 9)
pdb|4GJD|A Chain A, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
pdb|4GJD|B Chain B, Crystal Structure Of Renin In Complex With Nvp-bgq311
(compound 12)
Length = 340
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 58 KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
K + D + + NGT+ +RY +G VSG+LSQD + +G +T+ Q+FGE + P F+
Sbjct: 62 KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFM 120
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSA 177
A+FDG++GMG+ A+ V P F NII Q +L+++VF FY NR + + G +
Sbjct: 121 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGG 180
Query: 178 HDPKELE 184
DP+ E
Sbjct: 181 SDPQHYE 187
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 43/69 (62%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ LGGK +TLT DYV + S +S +C MDIPPP GP W LG FI KFY
Sbjct: 265 LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFY 324
Query: 61 TVFDMDNNQ 69
T FD NN+
Sbjct: 325 TEFDRRNNR 333
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX
pdb|2I4Q|B Chain B, Human ReninPF02342674 COMPLEX
Length = 336
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 58 KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
K + D + + NGT+ +RY +G VSG+LSQD + +G +T+ Q+FGE + P F+
Sbjct: 58 KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFM 116
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSA 177
A+FDG++GMG+ A+ V P F NII Q +L+++VF FY NR + + G +
Sbjct: 117 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGG 176
Query: 178 HDPKELE 184
DP+ E
Sbjct: 177 SDPQHYE 183
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 43/69 (62%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ LGGK +TLT DYV + S +S +C MDIPPP GP W LG FI KFY
Sbjct: 261 LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFY 320
Query: 61 TVFDMDNNQ 69
T FD NN+
Sbjct: 321 TEFDRRNNR 329
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1HRN|B Chain B, High Resolution Crystal Structures Of Recombinant Human
Renin In Complex With Polyhydroxymonoamide Inhibitors
pdb|1BIM|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIM|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|A Chain A, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|1BIL|B Chain B, Crystallographic Studies On The Binding Modes Of P2-P3
Butanediamide Renin Inhibitors
pdb|3GW5|A Chain A, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3GW5|B Chain B, Crystal Structure Of Human Renin Complexed With A Novel
Inhibitor
pdb|3KM4|A Chain A, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
pdb|3KM4|B Chain B, Optimization Of Orally Bioavailable Alkyl Amine Renin
Inhibitors
Length = 337
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 58 KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
K + D + + NGT+ +RY +G VSG+LSQD + +G +T+ Q+FGE + P F+
Sbjct: 59 KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFM 117
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSA 177
A+FDG++GMG+ A+ V P F NII Q +L+++VF FY NR + + G +
Sbjct: 118 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGG 177
Query: 178 HDPKELE 184
DP+ E
Sbjct: 178 SDPQHYE 184
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 43/69 (62%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ LGGK +TLT DYV + S +S +C MDIPPP GP W LG FI KFY
Sbjct: 262 LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFY 321
Query: 61 TVFDMDNNQ 69
T FD NN+
Sbjct: 322 TEFDRRNNR 330
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G24|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G26|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G27|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2FS4|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2FS4|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1N|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1N|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1O|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1R|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1R|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1S|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G1Y|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G1Y|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G20|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G20|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
C Ring
pdb|2G21|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G21|B Chain B, Ketopiperazine-Based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|A Chain A, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
pdb|2G22|B Chain B, Ketopiperazine-based Renin Inhibitors: Optimization Of The
"c" Ring
Length = 333
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 76/127 (59%), Gaps = 1/127 (0%)
Query: 58 KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
K + D + + NGT+ +RY +G VSG+LSQD + +G +T+ Q+FGE + P F+
Sbjct: 55 KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFM 113
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSA 177
A+FDG++GMG+ A+ V P F NII Q +L+++VF FY NR + + G +
Sbjct: 114 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGG 173
Query: 178 HDPKELE 184
DP+ E
Sbjct: 174 SDPQHYE 180
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 43/69 (62%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ LGGK +TLT DYV + S +S +C MDIPPP GP W LG FI KFY
Sbjct: 258 LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFY 317
Query: 61 TVFDMDNNQ 69
T FD NN+
Sbjct: 318 TEFDRRNNR 326
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin
pdb|3VCM|B Chain B, Crystal Structure Of Human Prorenin
Length = 335
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 58 KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
K + D + + NGT+ +RY +G VSG+LSQD + +G +T+ Q+FGE + P F+
Sbjct: 62 KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFM 120
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
A+FDG++GMG+ A+ V P F NII Q +L+++VF FY NR
Sbjct: 121 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNR 164
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 43/69 (62%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ LGGK +TLT DYV + S +S +C MDIPPP GP W LG FI KFY
Sbjct: 260 LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFY 319
Query: 61 TVFDMDNNQ 69
T FD NN+
Sbjct: 320 TEFDRRNNR 328
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|A Chain A, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|C Chain C, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|A Chain A, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|C Chain C, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 166
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)
Query: 58 KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
K + D + + NGT+ +RY +G VSG+LSQD + +G +T+ Q+FGE + P F+
Sbjct: 62 KLFDASDSSSYKHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFM 120
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
A+FDG++GMG+ A+ V P F NII Q +L+++VF FY NR
Sbjct: 121 LAEFDGVVGMGFIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNR 164
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|C Chain C, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|E Chain E, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
pdb|1SMR|G Chain G, The 3-D Structure Of Mouse Submaxillary Renin Complexed
With A Decapeptide Inhibitor Ch-66 Based On The 4-16
Fragment Of Rat Angiotensinogen
Length = 335
Score = 91.7 bits (226), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 70/115 (60%), Gaps = 4/115 (3%)
Query: 70 KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
+NG F I YGSG V G+LSQD++ +G +T+ Q FGE + P F+ A+FDG+LGMG+
Sbjct: 71 ENGDDFTIHYGSGRVKGFLSQDSVTVGGITV-TQTFGEVTQLPLIPFMLAQFDGVLGMGF 129
Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKELE 184
AV GV P F +I+ Q +L++ VF Y NR L GEV + DP+ +
Sbjct: 130 PAQAVGGVTPVFDHILSQGVLKEKVFSVYYNR--GPHLLGGEV-VLGGSDPQHYQ 181
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 44/69 (63%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ LGG+ +TL+ TDYVL+ +C MDIPPP GP+W+LG FI KFY
Sbjct: 260 LPDISFNLGGRAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGPVWVLGATFIRKFY 319
Query: 61 TVFDMDNNQ 69
T FD NN+
Sbjct: 320 TEFDRHNNR 328
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of
Cathepsin E
Length = 351
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 68/101 (67%), Gaps = 1/101 (0%)
Query: 72 GTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDN 131
G F+I+YG+G++SG + D + + LT+ Q FGE++ EPG TFV A+FDGILG+GY +
Sbjct: 79 GQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGYPS 138
Query: 132 IAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
+AV GV P F N++ Q L++ +F Y++ N E A E+
Sbjct: 139 LAVGGVTPVFDNMMAQNLVDLPMFSVYMSS-NPEGGAGSEL 178
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 47/69 (68%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
MP+V + G +TL+PT Y L + C SGF G+DI PPAGP+WILGDVFI +FY
Sbjct: 267 MPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFY 326
Query: 61 TVFDMDNNQ 69
+VFD NN+
Sbjct: 327 SVFDRGNNR 335
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|C Chain C, Native Cardosin A From Cynara Cardunculus L
Length = 239
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/115 (40%), Positives = 70/115 (60%), Gaps = 5/115 (4%)
Query: 58 KFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
Y D ++NGT AI YG+G+++G+ SQD++ IGDL +K Q F EA E F+
Sbjct: 56 SMYESSDSSTYKENGTFGAIIYGTGSITGFFSQDSVTIGDLVVKEQDFIEATDEADNVFL 115
Query: 118 AAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
FDGILG+ + I+V P +YN++ Q L+++ F F+LNR N ++ GE+
Sbjct: 116 HRLFDGILGLSFQTISV----PVWYNMLNQGLVKERRFSFWLNR-NVDEEEGGEL 165
>pdb|3OAD|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAD|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|B Chain B, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3OAG|D Chain D, Design And Optimization Of New Piperidines As Renin
Inhibitors
pdb|3O9L|B Chain B, Design And Optimisation Of New Piperidines As Renin
Inhibitors
pdb|3O9L|D Chain D, Design And Optimisation Of New Piperidines As Renin
Inhibitors
Length = 176
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 43/69 (62%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ LGGK +TLT DYV + S +S +C MDIPPP GP W LG FI KFY
Sbjct: 95 LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFY 154
Query: 61 TVFDMDNNQ 69
T FD NN+
Sbjct: 155 TEFDRRNNR 163
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of
A Pepsin From Atlantic Cod (Gadus Morhua)
Length = 324
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 55/91 (60%)
Query: 70 KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
+ G + YG+G + G L QDT+ +G + NQ GE+ EPG AA FDGILG+ Y
Sbjct: 66 ETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAY 125
Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLN 160
+IA G P F N+ Q L+EK++F FYL+
Sbjct: 126 PSIAAAGAVPVFDNMGSQSLVEKDLFSFYLS 156
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ + G L P+ Y+ + C SG +P +WI GDVF+ +Y
Sbjct: 253 LPDITFTINGVKQPLPPSAYIE----GDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYY 308
Query: 61 TVFDMDNNQ 69
T++D NN+
Sbjct: 309 TIYDRTNNK 317
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|1QRP|E Chain E, Human Pepsin 3a In Complex With A Phosphonate Inhibitor
Iva-Val-Val- Leu(P)-(O)phe-Ala-Ala-Ome
pdb|1PSN|A Chain A, The Crystal Structure Of Human Pepsin And Its Complex With
Pepstatin
pdb|3UTL|A Chain A, Human Pepsin 3b
Length = 326
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 64 DMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDG 123
D Q +I YG+G+++G L DT+++G ++ NQ+FG + EPG A FDG
Sbjct: 60 DSSTYQSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDG 119
Query: 124 ILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
ILG+ Y +I+ G P F NI Q L+ +++F YL+
Sbjct: 120 ILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSA 157
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ + G + + P+ Y+L+ S C+SGF GM++P +G +WILGDVFI +++
Sbjct: 255 LPDIVFTINGVQYPVPPSAYILQ----SEGSCISGFQGMNLPTESGELWILGDVFIRQYF 310
Query: 61 TVFDMDNNQ 69
TVFD NNQ
Sbjct: 311 TVFDRANNQ 319
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution
Length = 326
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 57/98 (58%)
Query: 64 DMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDG 123
D Q +I YG+G+++G L DT+++G ++ NQ+FG + EPG A FDG
Sbjct: 60 DSSTYQSTSETVSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDG 119
Query: 124 ILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
ILG+ Y +I+ G P F NI Q L+ +++F YL+
Sbjct: 120 ILGLAYPSISSSGATPVFDNIWNQGLVSQDLFSVYLSA 157
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ + G + + P+ Y+L+ S C+SGF GM++P +G +WILGDVFI +++
Sbjct: 255 LPDIVFTINGVQYPVPPSAYILQ----SEGSCISGFQGMNVPTESGELWILGDVFIRQYF 310
Query: 61 TVFDMDNNQ 69
TVFD NNQ
Sbjct: 311 TVFDRANNQ 319
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 2/103 (1%)
Query: 70 KNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY 129
NG F+++YGSG+++G+ DTL + + + NQ FG + EPG FV A+FDGI+G+ Y
Sbjct: 66 TNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAY 125
Query: 130 DNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
++VD ++Q+ L VF YL+ N + + G V
Sbjct: 126 PALSVDEATTAMQGMVQEGALTSPVFSVYLS--NQQGSSGGAV 166
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAG-PIWILGDVFIGKF 59
+P++ I+ G F L P+ Y+L +++ C G + G P+WILGDVF+ +
Sbjct: 257 LPSLTFIINGVEFPLPPSSYIL----SNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSY 312
Query: 60 YTVFDMDNNQ 69
Y+V+D+ NN+
Sbjct: 313 YSVYDLGNNR 322
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii.
Three-Dimensional Structure Of The Hexagonal Crystal
Form Of Porcine Pepsin At 2.3 Angstroms Resolution
Length = 326
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 64 DMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDG 123
D + + +I YG+G+++G L DT+++G ++ NQ+FG + EPG A FDG
Sbjct: 60 DSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDG 119
Query: 124 ILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
ILG+ Y +I+ G P F N+ Q L+ +++F YL+
Sbjct: 120 ILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 157
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ + G + L+P+ Y+L+ C SGF GMD+P +G +WILGDVFI ++Y
Sbjct: 255 LPDIVFTINGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYY 310
Query: 61 TVFDMDNNQ 69
TVFD NN+
Sbjct: 311 TVFDRANNK 319
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine
Pepsinogen
Length = 370
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 64 DMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDG 123
D + + +I YG+G+++G L DT+++G ++ NQ+FG + EPG A FDG
Sbjct: 104 DSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDG 163
Query: 124 ILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
ILG+ Y +I+ G P F N+ Q L+ +++F YL+
Sbjct: 164 ILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 201
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ + G + L+P+ Y+L+ C SGF GMD+P +G +WILGDVFI ++Y
Sbjct: 299 LPDIVFTIDGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYY 354
Query: 61 TVFDMDNNQ 69
TVFD NN+
Sbjct: 355 TVFDRANNK 363
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin.
Evidence For A Flexible Subdomain
Length = 326
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 64 DMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDG 123
D + + +I YG+G+++G L DT+++G ++ NQ+FG + EPG A FDG
Sbjct: 60 DSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDG 119
Query: 124 ILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
ILG+ Y +I+ G P F N+ Q L+ +++F YL+
Sbjct: 120 ILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 157
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ + G + L+P+ Y+L+ C SGF GMD+P +G +WILGDVFI ++Y
Sbjct: 255 LPDIVFTIDGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYY 310
Query: 61 TVFDMDNNQ 69
TVFD NN+
Sbjct: 311 TVFDRANNK 319
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1PSA|B Chain B, Structure Of A Pepsin(Slash)renin Inhibitor Complex
Reveals A Novel Crystal Packing Induced By Minor
Chemical Alterations In The Inhibitor
pdb|1YX9|A Chain A, Effect Of Dimethyl Sulphoxide On The Crystal Structure Of
Porcine Pepsin
Length = 326
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 64 DMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDG 123
D + + +I YG+G+++G L DT+++G ++ NQ+FG + EPG A FDG
Sbjct: 60 DSSTFEATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDG 119
Query: 124 ILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
ILG+ Y +I+ G P F N+ Q L+ +++F YL+
Sbjct: 120 ILGLAYPSISASGATPVFDNLWDQGLVSQDLFSVYLSS 157
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ + G + L+P+ Y+L+ C SGF GMD+P +G +WILGDVFI ++Y
Sbjct: 255 LPDIVFTINGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYY 310
Query: 61 TVFDMDNNQ 69
TVFD NN+
Sbjct: 311 TVFDRANNK 319
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To
Porcine Pepsin
Length = 326
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 74 QFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIA 133
+ +I YG+G+++G L DT+++G ++ NQ+FG + EPG A FDGILG+ Y +I+
Sbjct: 70 ELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSIS 129
Query: 134 VDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
G P F N+ Q L+ +++F YL+
Sbjct: 130 ASGATPVFDNLWDQGLVSQDLFSVYLSS 157
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ + G + L+P+ Y+L+ C SGF GMD+P +G +WILGDVFI ++Y
Sbjct: 255 LPDIVFTINGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYY 310
Query: 61 TVFDMDNNQ 69
TVFD NN+
Sbjct: 311 TVFDRANNK 319
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine
Pepsin Refined At 1.8 Angstroms Resolution
Length = 326
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 74 QFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIA 133
+ +I YG+G+++G L DT+++G ++ NQ+FG + EPG A FDGILG+ Y +I+
Sbjct: 70 ELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSIS 129
Query: 134 VDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
G P F N+ Q L+ +++F YL+
Sbjct: 130 ASGATPVFDNLWDQGLVSQDLFSVYLSS 157
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ + G + L+P+ Y+L+ C SGF GMD+P +G +WILGDVFI ++Y
Sbjct: 255 LPDIVFTIDGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYY 310
Query: 61 TVFDMDNNQ 69
TVFD NN+
Sbjct: 311 TVFDRANNK 319
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms
Resolution
Length = 370
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 56/88 (63%)
Query: 74 QFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIA 133
+ +I YG+G+++G L DT+++G ++ NQ+FG + EPG A FDGILG+ Y +I+
Sbjct: 114 ELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSIS 173
Query: 134 VDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
G P F N+ Q L+ +++F YL+
Sbjct: 174 ASGATPVFDNLWDQGLVSQDLFSVYLSS 201
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ + G + L+P+ Y+L+ C SGF GMD+P +G +WILGDVFI ++Y
Sbjct: 299 LPDIVFTIDGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYY 354
Query: 61 TVFDMDNNQ 69
TVFD NN+
Sbjct: 355 TVFDRANNK 363
>pdb|1B5F|B Chain B, Native Cardosin A From Cynara Cardunculus L.
pdb|1B5F|D Chain D, Native Cardosin A From Cynara Cardunculus L
Length = 87
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
MPNV +GGK F LTP Y+LKV ++ C+SGF MD GP+WILGDVF+ ++
Sbjct: 13 MPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMD-ATLLGPLWILGDVFMRPYH 71
Query: 61 TVFDMDN 67
TVFD N
Sbjct: 72 TVFDYGN 78
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972
pdb|1CMS|A Chain A, The Three-Dimensional Structure Of Recombinant Bovine
Chymosin At 2.3 Angstroms Resolution
pdb|4CMS|A Chain A, X-Ray Analyses Of Aspartic Proteinases Iv. Structure And
Refinement At 2.2 Angstroms Resolution Of Bovine
Chymosin
pdb|4AA8|A Chain A, Bovine Chymosin At 1.8a Resolution
Length = 323
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 58/99 (58%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
Q G +I YG+G++ G L DT+ + ++ Q G + +EPG F A+FDGILGM
Sbjct: 67 QNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDVFTYAEFDGILGMA 126
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKL 167
Y ++A + P F N++ + L+ +++F Y++R E +
Sbjct: 127 YPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESM 165
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
MP V + GK + LTP+ Y + C SGF + WILGDVFI ++Y
Sbjct: 256 MPTVVFEINGKMYPLTPSAYTSQ----DQGFCTSGFQSEN----HSQKWILGDVFIREYY 307
Query: 61 TVFDMDNN 68
+VFD NN
Sbjct: 308 SVFDRANN 315
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution
Length = 320
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 57/90 (63%)
Query: 72 GTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDN 131
G +I YG+G++ G+L DT+ + ++ NQ G + ++PG F ++FDGILG+ Y +
Sbjct: 67 GKPLSIHYGTGSMEGFLGYDTVTVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAYPS 126
Query: 132 IAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
+A + P F N++ + L+ +++F Y++R
Sbjct: 127 LASEYSVPVFDNMMDRHLVARDLFSVYMDR 156
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 8/69 (11%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
MP V + G+++ L+P+ Y K C SGF G + +WILGDVFI ++Y
Sbjct: 253 MPTVVFEINGRDYPLSPSAYTSK----DQGFCTSGFQGDN----NSELWILGDVFIREYY 304
Query: 61 TVFDMDNNQ 69
+VFD NN+
Sbjct: 305 SVFDRANNR 313
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation,
Kinetic Characterization And X-Ray Analysis At
2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf
Chymosin
Length = 323
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 58/99 (58%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
Q G +I YG+G++ G L DT+ + ++ Q G + +EPG F A+FDGILGM
Sbjct: 67 QNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMA 126
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKL 167
Y ++A + P F N++ + L+ +++F Y++R E +
Sbjct: 127 YPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQESM 165
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
MP V + GK + LTP+ Y + C SGF + WILGDVFI ++Y
Sbjct: 256 MPTVVFEINGKMYPLTPSAYTSQ----DQGFCTSGFQSEN----HSQKWILGDVFIREYY 307
Query: 61 TVFDMDNN 68
+VFD NN
Sbjct: 308 SVFDRANN 315
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral
Inhibitor
Length = 453
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGF--TFVAAKFDGILG 126
+K+GT+ + Y SG VSG+ S+D + +G+L++ + F E I GF T+ A+ FDGILG
Sbjct: 191 EKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILG 249
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
+G+ ++++ V+P + Q +E +F FYL
Sbjct: 250 LGWKDLSIGSVDPIVVELKNQNKIENALFTFYL 282
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P + +TL P Y+ + +C+ G+D P P +ILGD F+ K++
Sbjct: 378 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 434
Query: 61 TVFDMDNNQ 69
TVFD DN+
Sbjct: 435 TVFDYDNHS 443
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1SME|B Chain B, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From
Plasmodium Falciparum, In Complex With Pepstatin A
pdb|1ME6|A Chain A, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1ME6|B Chain B, Crystal Structure Of Plasmepsin Ii, An Aspartyl Protease
From Plasmodium Falciparum, In Complex With A
Statine-Based Inhibitor
pdb|1XE5|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE5|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|A Chain A, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|1XE6|B Chain B, Structure Of Plasmepsin Ii In Complex Of An Pepstatin
Analogue
pdb|2IGX|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|A Chain A, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2IGY|B Chain B, Achiral, Cheap And Potent Inhibitors Of Plasmepsins Ii
pdb|2R9B|A Chain A, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
pdb|2R9B|B Chain B, Structural Analysis Of Plasmepsin 2 From Plasmodium
Falciparum Complexed With A Peptide-Based Inhibitor
Length = 329
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGF--TFVAAKFDGILG 126
+K+GT+ + Y SG VSG+ S+D + +G+L++ + F E I GF T+ A+ FDGILG
Sbjct: 67 EKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILG 125
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
+G+ ++++ V+P + Q +E +F FYL
Sbjct: 126 LGWKDLSIGSVDPIVVELKNQNKIENALFTFYL 158
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P + +TL P Y+ + +C+ G+D P P +ILGD F+ K++
Sbjct: 254 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 310
Query: 61 TVFDMDNNQ 69
TVFD DN+
Sbjct: 311 TVFDYDNHS 319
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|B Chain B, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|C Chain C, Proplasmepsin Ii From Plasmodium Falciparum
pdb|1PFZ|D Chain D, Proplasmepsin Ii From Plasmodium Falciparum
Length = 380
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGF--TFVAAKFDGILG 126
+K+GT+ + Y SG VSG+ S+D + +G+L++ + F E I GF T+ A+ FDGILG
Sbjct: 118 EKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILG 176
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
+G+ ++++ V+P + Q +E +F FYL
Sbjct: 177 LGWKDLSIGSVDPIVVELKNQNKIENALFTFYL 209
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P + +TL P Y+ + +C+ G+D P P +ILGD F+ K++
Sbjct: 305 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 361
Query: 61 TVFDMDNNQ 69
TVFD DN+
Sbjct: 362 TVFDYDNHS 370
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium
Falciparum
Length = 329
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGF--TFVAAKFDGILG 126
+K+GT+ + Y SG VSG+ S+D + +G+L++ + F E I GF T+ A+ FDGILG
Sbjct: 67 EKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILG 125
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
+G+ ++++ V+P + Q +E +F FYL
Sbjct: 126 LGWKDLSIGSVDPIVVELKNQNKIENALFTFYL 158
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P + +TL P Y+ + +C+ G+D P P +ILGD F+ K++
Sbjct: 254 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 310
Query: 61 TVFDMDNNQ 69
TVFD DN+
Sbjct: 311 TVFDYDNHS 319
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1M43|B Chain B, Crystal Structure Of Pmii In Complex With Pepstatin A To
2.4 A
pdb|1LEE|A Chain A, Crystal Structure Of Plasmepsin From P. Falciparum In
Complex With Inhibitor Rs367
pdb|1LF2|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Rs370
Length = 331
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGF--TFVAAKFDGILG 126
+K+GT+ + Y SG VSG+ S+D + +G+L++ + F E I GF T+ A+ FDGILG
Sbjct: 69 EKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILG 127
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
+G+ ++++ V+P + Q +E +F FYL
Sbjct: 128 LGWKDLSIGSVDPIVVELKNQNKIENALFTFYL 160
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P + +TL P Y+ + +C+ G+D P P +ILGD F+ K++
Sbjct: 256 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 312
Query: 61 TVFDMDNNQ 69
TVFD DN+
Sbjct: 313 TVFDYDNHS 321
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In
Complex With Inhibitor Eh58
pdb|1LF4|A Chain A, Structure Of Plasmepsin Ii
pdb|1XDH|A Chain A, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1XDH|B Chain B, Structure Of Plasmepsin Ii In Complex With Pepstatin A
pdb|1W6H|A Chain A, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6H|B Chain B, Novel Plasmepsin Ii-inhibitor Complex
pdb|1W6I|A Chain A, Plasmepsin Ii-Pepstatin A Complex
pdb|1W6I|C Chain C, Plasmepsin Ii-Pepstatin A Complex
Length = 331
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGF--TFVAAKFDGILG 126
+K+GT+ + Y SG VSG+ S+D + +G+L++ + F E I GF T+ A+ FDGILG
Sbjct: 69 EKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILG 127
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
+G+ ++++ V+P + Q +E +F FYL
Sbjct: 128 LGWKDLSIGSVDPIVVELKNQNKIENALFTFYL 160
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P + +TL P Y+ + +C+ G+D P P +ILGD F+ K++
Sbjct: 256 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 312
Query: 61 TVFDMDNNQ 69
TVFD DN+
Sbjct: 313 TVFDYDNHS 321
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 69 QKNGTQFAIRYGSGA-VSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
Q +G ++I YG G+ SG L++D + +G L IK Q E K +F + DG+LG+
Sbjct: 67 QADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTI-ELAKREAASFASGPNDGLLGL 125
Query: 128 GYDNIA-VDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
G+D I V GV+ P N+I Q L+ + +FG YL +
Sbjct: 126 GFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGK 160
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic
Proteinase From Rhizopus Chinensis. Implications For A
Mechanism Of Action
pdb|4APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|5APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|6APR|E Chain E, Structures Of Complexes Of Rhizopuspepsin With Pepstatin
And Other Statine-Containing Inhibitors
pdb|2APR|A Chain A, Structure And Refinement At 1.8 Angstroms Resolution Of
The Aspartic Proteinase From Rhizopus Chinensis
Length = 325
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 69 QKNGTQFAIRYGSGA-VSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
Q +G ++I YG G+ SG L++D + +G L IK Q E K +F + DG+LG+
Sbjct: 67 QADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTI-ELAKREAASFASGPNDGLLGL 125
Query: 128 GYDNIA-VDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
G+D I V GV+ P N+I Q L+ + +FG YL +
Sbjct: 126 GFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGK 160
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 59/95 (62%), Gaps = 7/95 (7%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIK----EPGFTFVAAKFDGI 124
+K+GT+ I YGSG V GY S+D + +GDL++ + F E EP ++ ++FDGI
Sbjct: 67 EKDGTKVEISYGSGTVRGYFSKDVISLGDLSLPYK-FIEVTDADDLEPIYS--GSEFDGI 123
Query: 125 LGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
LG+G+ ++++ ++P + +Q ++ +F FYL
Sbjct: 124 LGLGWKDLSIGSIDPVVVELKKQNKIDNALFTFYL 158
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P ++ +TL P Y+ +S ++C+ +DI +ILGD F+ K++
Sbjct: 254 LPTLEFHSRNNKYTLEPEFYMDPLSDIDPALCMLYILPVDIDDNT---FILGDPFMRKYF 310
Query: 61 TVFDMDNNQKNGTQFAI 77
TVFD +K FA+
Sbjct: 311 TVFDY---EKESVGFAV 324
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 59/95 (62%), Gaps = 7/95 (7%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIK----EPGFTFVAAKFDGI 124
+K+GT+ I YGSG V G+ S+D + +G L++ + F E EP +T AA+FDGI
Sbjct: 67 EKDGTKVEITYGSGTVRGFFSKDLVTLGYLSLPYK-FIEVTDTDDLEPLYT--AAEFDGI 123
Query: 125 LGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
LG+G+ ++++ ++P + Q +++ +F FYL
Sbjct: 124 LGLGWKDLSIGSIDPIVVELKNQNKIDQALFTFYL 158
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
MP ++ +TL P Y+ + ++C+ +DI +ILGD F+ K++
Sbjct: 254 MPTLEFKSANNTYTLEPEYYMEPLLDIDDTLCMLYILPVDIDKNT---FILGDPFMRKYF 310
Query: 61 TVFDMDNNQKNGTQFAI 77
TVFD D K FA+
Sbjct: 311 TVFDYD---KESIGFAV 324
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QRV|B Chain B, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium
Falciparum
pdb|3QS1|A Chain A, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|B Chain B, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|C Chain C, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
pdb|3QS1|D Chain D, Crystal Structure Of Kni-10006 Complex Of Plasmepsin I
(Pmi) From Plasmodium Falciparum
Length = 336
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGF--TFVAAKFDGILG 126
+K+GT+ + Y SG VSG+ S+D + I +L+ + F E GF + +FDGI+G
Sbjct: 74 EKDGTKVEMNYVSGTVSGFFSKDIVTIANLSFPYK-FIEVTDTNGFEPAYTLGQFDGIVG 132
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
+G+ ++++ V+P + Q +E+ VF FYL
Sbjct: 133 LGWKDLSIGSVDPVVVELKNQNKIEQAVFTFYL 165
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P ++ +TL P Y+ ++ S+C+ +D+ +ILGD F+ K++
Sbjct: 261 LPTLEFRSATNVYTLEPEYYLQQIFDFGISLCMVSIIPVDLNKNT---FILGDPFMRKYF 317
Query: 61 TVFDMDNN 68
TVFD DN+
Sbjct: 318 TVFDYDNH 325
>pdb|1QS8|A Chain A, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
pdb|1QS8|B Chain B, Crystal Structure Of The P. Vivax Aspartic Proteinase
Plasmepsin Complexed With The Inhibitor Pepstatin A
Length = 329
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 58/95 (61%), Gaps = 7/95 (7%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIK----EPGFTFVAAKFDGI 124
+K+GT+ I YGSG V G+ S+D + +G L++ + F E I EP ++ + +FDGI
Sbjct: 69 EKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPYK-FIEVIDTDDLEPIYS--SVEFDGI 125
Query: 125 LGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
LG+G+ ++++ ++P + Q ++ +F FYL
Sbjct: 126 LGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL 160
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
MP ++ +TL P Y+ + ++C+ +DI +ILGD F+ K++
Sbjct: 256 MPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDIDSNT---FILGDPFMRKYF 312
Query: 61 TVFDMDNNQKNGTQFAI 77
TVFD D K FAI
Sbjct: 313 TVFDYD---KESVGFAI 326
>pdb|3IXV|A Chain A, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|C Chain C, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|D Chain D, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|E Chain E, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|F Chain F, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|G Chain G, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|H Chain H, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|I Chain I, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|J Chain J, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|K Chain K, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|L Chain L, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXV|M Chain M, Scorpion Hemocyanin Resting State Pseudo Atomic Model
Built Cryo-Em Density Map
pdb|3IXW|A Chain A, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|C Chain C, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|D Chain D, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|E Chain E, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|F Chain F, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|G Chain G, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|H Chain H, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|I Chain I, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|J Chain J, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|K Chain K, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|L Chain L, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
pdb|3IXW|M Chain M, Scorpion Hemocyanin Activated State Pseudo Atomic Model
Built Based On Cryo-Em Density Map
Length = 626
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 229 LEYPGVELKSLRILNKQGPTDQLETFWQLIRMDE--VYVRDKELTEEYNIPYHIQHEDFK 286
L +PGVE+ + I +K L+ + + D+ + +Y +H+ HE F
Sbjct: 383 LSFPGVEVVGVSINSKTANVITTLIKESLLELSHGINFGTDQSVKVKY---HHLDHEPFT 439
Query: 287 YEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKF 333
Y I +ENNS K +RIFL K D N+L QR LFIELDKF
Sbjct: 440 YNIVVENNSGAEKHSTVRIFLAPKYDELNNKLEPDEQRRLFIELDKF 486
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Query: 157 FYLN-----RYNTEKLANG---EVPIPSAHDPKE-----LESRIEN-KY-QLPEYDHVGD 201
FY++ RY++E+L+NG +P + +P E L S + +Y PE + D
Sbjct: 198 FYMHQQMCARYDSERLSNGLQRMIPFHNFDEPLEGYAPHLTSLVSGLQYASRPEGYSIHD 257
Query: 202 GCSASYTEMQQWTNNIIEAINQGYAV 227
+M +W I++AIN Y V
Sbjct: 258 LSDVDVQDMVRWRERILDAINMHYIV 283
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
pdb|1MIQ|B Chain B, Crystal Structure Of Proplasmepsin From The Human Malarial
Pathogen Plasmodium Vivax
Length = 375
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 57/95 (60%), Gaps = 7/95 (7%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIK----EPGFTFVAAKFDGI 124
+K+GT+ I YGSG V G+ S+D + +G L++ + F E EP ++ + +FDGI
Sbjct: 115 EKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPYK-FIEVTDTDDLEPIYS--SVEFDGI 171
Query: 125 LGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
LG+G+ ++++ ++P + Q ++ +F FYL
Sbjct: 172 LGLGWKDLSIGSIDPIVVELKNQNKIDNALFTFYL 206
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
MP ++ +TL P Y+ + ++C+ +DI +ILGD F+ K++
Sbjct: 302 MPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDIDSNT---FILGDPFMRKYF 358
Query: 61 TVFDMDNNQKNGTQFAI 77
TVFD D K FAI
Sbjct: 359 TVFDYD---KESVGFAI 372
>pdb|3HHS|B Chain B, Crystal Structure Of Manduca Sexta Prophenoloxidase
Length = 684
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 29/202 (14%)
Query: 143 NIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKELESRIENKYQLPEYDHVGDG 202
N+++ ++ N G+Y + +N G V HDP + L ++ +GD
Sbjct: 347 NLMESSIISPNR-GYYGDLHNM-----GHVFAAYTHDP--------DHRHLEQFGVMGDS 392
Query: 203 CSAS----YTEMQQWTNNII----EAINQGYAVTLEYPGVELKSLRILNKQGPTDQLETF 254
+A + ++ +++ E + L++PGV + S+ I + T L T
Sbjct: 393 ATAMRDPFFYRWHRFVDDVFNIYKEKLTPYTNERLDFPGVRVSSVGIEGARPNT--LRTL 450
Query: 255 WQLIRMDEVYVRDKELTEEYNIPY---HIQHEDFKYEITIENNSNETKTGIMRIFLGAKN 311
WQ ++ R + T ++ H+QH++F+Y I + N + G +RIF+ K
Sbjct: 451 WQQSTVE--LGRGLDFTPRGSVLARFTHLQHDEFQYVIEVNNTTGGNLMGTVRIFMAPKV 508
Query: 312 DIEGNELPLSAQRSLFIELDKF 333
D G + + QR L IELDKF
Sbjct: 509 DDNGQPMSFNKQRRLMIELDKF 530
>pdb|3HHS|A Chain A, Crystal Structure Of Manduca Sexta Prophenoloxidase
Length = 694
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 69/139 (49%), Gaps = 13/139 (9%)
Query: 207 YTEMQQWTNNIIEAINQG------YAVT-LEYPGVELKSLRILNKQGPTDQLETFWQLIR 259
+ + W ++I ++ + Y+ + LE PGV++ S+ + + G + L TFW ++
Sbjct: 403 FYRVHAWVDDIFQSFKEAPHNVRPYSRSQLENPGVQVTSVAVESAGGQQNVLNTFW--MQ 460
Query: 260 MDEVYVRDKELTEE---YNIPYHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGN 316
D + + ++ Y H+ H F+Y I N ++ +T + RIF+ K D
Sbjct: 461 SDVNLSKGLDFSDRGPVYARFTHLNHRPFRYVIKANNTASARRTTV-RIFIAPKTDERNL 519
Query: 317 ELPLSAQRSLFIELDKFRV 335
LS QR +FIE+D+F V
Sbjct: 520 PWALSDQRKMFIEMDRFVV 538
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 27/107 (25%)
Query: 147 QKLLEKNVFG---FYLN-----RYNTEKLANG----------EVPIPSAHDPKELESRIE 188
+K++ K+ G FY++ RYN E+L N PIP A+ PK L+S
Sbjct: 228 EKIVAKDRRGELFFYMHQQIIARYNCERLCNSLKRVKKFSDWREPIPEAYYPK-LDSLTS 286
Query: 189 NKYQLP--------EYDHVGDGCSASYTEMQQWTNNIIEAINQGYAV 227
+ P + DG + + +M+++ NI EAI G +
Sbjct: 287 ARGWPPRQAGMRWQDLKRPVDGLNVTIDDMERYRRNIEEAIATGNVI 333
>pdb|1OXY|A Chain A, Crystallographic Analysis Of Oxygenated And Deoxygenated
States Of Arthropod Hemocyanin Shows Unusual Differences
Length = 628
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 247 PTDQLETFWQLIRMDEV---YVRDKELTEEYNIP-----------YHIQHEDFKYEITIE 292
P Q++ R+D V ++R++EL ++ I YH+ HE F Y + ++
Sbjct: 389 PDIQVQDVTLHARVDNVVHTFMREQELELKHGINPGNARSIKAKYYHLDHEPFSYAVNVQ 448
Query: 293 NNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRV 335
NNS K +RIFL K D GNE+ R IELDKF+
Sbjct: 449 NNSASDKHATVRIFLAPKYDELGNEIKADELRRTAIELDKFKT 491
>pdb|1LL1|A Chain A, Hydroxo Bridge Met Form Hemocyanin From Limulus
Length = 628
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 247 PTDQLETFWQLIRMDEV---YVRDKELTEEYNIP-----------YHIQHEDFKYEITIE 292
P Q++ R+D V ++R++EL ++ I YH+ HE F Y + ++
Sbjct: 389 PDIQVQDVTLHARVDNVVHTFMREQELELKHGINPGNARSIKARYYHLDHEPFSYAVNVQ 448
Query: 293 NNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRV 335
NNS K +RIFL K D GNE+ R IELDKF+
Sbjct: 449 NNSASDKHATVRIFLAPKYDELGNEIKADELRRTAIELDKFKT 491
>pdb|1LLA|A Chain A, Crystal Structure Of Deoxygenated Limulus Polyphemus
Subunit Ii Hemocyanin At 2.18 Angstroms Resolution:
Clues For A Mechanism For Allosteric Regulation
pdb|1NOL|A Chain A, Oxygenated Hemocyanin (Subunit Type Ii)
Length = 628
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 14/103 (13%)
Query: 247 PTDQLETFWQLIRMDEV---YVRDKELTEEYNIP-----------YHIQHEDFKYEITIE 292
P Q++ R+D V ++R++EL ++ I YH+ HE F Y + ++
Sbjct: 389 PDIQVQDVTLHARVDNVVHTFMREQELELKHGINPGNARSIKARYYHLDHEPFSYAVNVQ 448
Query: 293 NNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRV 335
NNS K +RIFL K D GNE+ R IELDKF+
Sbjct: 449 NNSASDKHATVRIFLAPKYDELGNEIKADELRRTAIELDKFKT 491
>pdb|1WKR|A Chain A, Crystal Structure Of Aspartic Proteinase From Irpex
Lacteus
Length = 340
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 70/171 (40%), Gaps = 22/171 (12%)
Query: 19 DYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVFDMDNNQKNGTQFAIR 78
DYV+ V + S + S + + + W+ D K Y + + ++
Sbjct: 13 DYVVNVGVGSPATTYS----LLVDTGSSNTWLGAD----KSY--VKTSTSSATSDKVSVT 62
Query: 79 YGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVE 138
YGSG+ SG DT+ +G LTI Q G A ++ GF V DGILG+G ++ V +
Sbjct: 63 YGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSGFDGV----DGILGVGPVDLTVGTLS 118
Query: 139 PPFY--------NIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
P N+ Q + N+ +E NGE+ + K
Sbjct: 119 PHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGELTFGATDSSK 169
>pdb|3FNS|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNS|B Chain B, Crystal Structure Of Histo-Aspartic Protease (Hap) From
Plasmodium Falciparum
pdb|3FNT|A Chain A, Crystal Structure Of Pepstatin A Bound Histo-aspartic
Protease (hap) From Plasmodium Falciparum
pdb|3FNU|A Chain A, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|B Chain B, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|C Chain C, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3FNU|D Chain D, Crystal Structure Of Kni-10006 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 332
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 52/100 (52%), Gaps = 3/100 (3%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFT--FVAAKFDGILG 126
+K+ T + +G +SG S+D + IG L++ + F E + GF + + DG+ G
Sbjct: 71 EKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVPYK-FIEMTEIVGFEPFYSESDVDGVFG 129
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK 166
+G+ ++++ ++P + Q +E+ V+ YL N K
Sbjct: 130 LGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKNK 169
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P ++ K +TL P Y+ + S++C+ +D+ ++LGD F+ K++
Sbjct: 258 LPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDLEKNT---FVLGDPFMRKYF 314
Query: 61 TVFDMDNN 68
TV+D DN+
Sbjct: 315 TVYDYDNH 322
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFT--FVAAKFDGILG 126
+K+ T + +G +SG S+D + IG L++ + F E + GF + + DG+ G
Sbjct: 190 EKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVPYK-FIEMTEIVGFEPFYSESDVDGVFG 248
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYL 159
+G+ ++++ ++P + Q +E+ V+ YL
Sbjct: 249 LGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYL 281
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 3/68 (4%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P ++ K +TL P Y+ + S++C+ +D+ ++LGD F+ K++
Sbjct: 377 LPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDLEKNT---FVLGDPFMRKYF 433
Query: 61 TVFDMDNN 68
TV+D DN+
Sbjct: 434 TVYDYDNH 441
>pdb|1LYW|A Chain A, Cathepsin D At Ph 7.5
pdb|1LYW|C Chain C, Cathepsin D At Ph 7.5
pdb|1LYW|E Chain E, Cathepsin D At Ph 7.5
pdb|1LYW|G Chain G, Cathepsin D At Ph 7.5
pdb|1LYA|A Chain A, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYA|C Chain C, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYB|A Chain A, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
pdb|1LYB|C Chain C, Crystal Structures Of Native And Inhibited Forms Of
Human Cathepsin D: Implications For Lysosomal Targeting
And Drug Design
Length = 97
Score = 43.1 bits (100), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 70 KNGTQFAIRYGSGAVSGYLSQDTLRI 95
KNGT F I YGSG++SGYLSQDT+ +
Sbjct: 69 KNGTSFDIHYGSGSLSGYLSQDTVSV 94
>pdb|1HC1|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|A Chain A, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HCY|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|B Chain B, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|C Chain C, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|D Chain D, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|E Chain E, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
pdb|1HC1|F Chain F, Crystal Structure Of Hexameric Haemocyanin From Panulirus
Interruptus Refined At 3.2 Angstroms Resolution
Length = 657
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 278 YHIQHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKF 333
+ + H +F Y+IT+ NN++ + RIFL D G L L R IELDKF
Sbjct: 453 HRLNHNEFTYKITMSNNNDGERLATFRIFLCPIEDNNGITLTLDEARWFCIELDKF 508
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 59 FYTVFDMDNNQKNGTQFAIRYGSGAVS-GYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFV 117
YT +Q GT F I YG G+ S G L +DT+ G +I QVF + K
Sbjct: 64 IYTPKSSTTSQNLGTPFYIGYGDGSSSQGTLYKDTVGFGGASITKQVFADITK------- 116
Query: 118 AAKFDGILGMGYD-NIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
+ GILG+GY N A + + Q ++ KN + YLN N A G++
Sbjct: 117 TSIPQGILGIGYKTNEAAGDYDNVPVTLKNQGVIAKNAYSLYLNSPNA---ATGQI 169
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 73 TQFAIRYGSGAVS-GYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFD-GILGMGYD 130
T F+I YG G+ S G L +DT+ G ++IKNQV + + D GILG+GY
Sbjct: 78 TPFSIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVD--------STSIDQGILGVGYK 129
Query: 131 -NIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
N A + + +Q ++ KN + YLN
Sbjct: 130 TNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNS 161
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 73 TQFAIRYGSGAVS-GYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFD-GILGMGYD 130
T F I YG G+ S G L +DT+ G ++IKNQV + + D GILG+GY
Sbjct: 78 TPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVD--------STSIDQGILGVGYK 129
Query: 131 -NIAVDGVEPPFYNIIQQKLLEKNVFGFYLNR 161
N A + + +Q ++ KN + YLN
Sbjct: 130 TNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNS 161
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex
pdb|2ASI|A Chain A, Aspartic Proteinase
Length = 361
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 11/95 (11%)
Query: 77 IRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAK-----FDGILGMGY-D 130
I YG+G +G +D++ IGD+T+ Q+ G T + DG+ G Y D
Sbjct: 80 ITYGTGGANGLYFEDSIAIGDITVTKQILAYVDNVRGPTAEQSPNADIFLDGLFGAAYPD 139
Query: 131 NIAVDGVEPPFYNII-----QQKLLEKNVFGFYLN 160
N A++ YN + +Q L+ +F Y+N
Sbjct: 140 NTAMEAEYGSTYNTVHVNLYKQGLISSPLFSVYMN 174
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 26/104 (25%)
Query: 68 NQKNGTQFAIRYGSGA-VSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILG 126
+Q T+F I+YG G+ G L +DT+ IG +++++Q+F + + GILG
Sbjct: 73 SQNLNTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANV-------WSTSARKGILG 125
Query: 127 MG----------YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLN 160
+G YDN+ + ++ Q ++ K + YLN
Sbjct: 126 IGFQSGEATEFDYDNLPI--------SLRNQGIIGKAAYSLYLN 161
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 77 IRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAK-----FDGILGMGY-D 130
I YG+G +G +D++ +G T+K Q G T + DGI G Y D
Sbjct: 80 ITYGTGGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAYPD 139
Query: 131 NIAVDGVEPPFYNII-----QQKLLEKNVFGFYLN 160
N A++ YN + +Q L+ VF Y+N
Sbjct: 140 NTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMN 174
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 75 FAIRYGSGAVS-GYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIA 133
F+I YG G S G +DT+ G ++I Q F + + GILG+GY
Sbjct: 79 FSIEYGDGTTSQGTWYKDTIGFGGISITKQQFADVTS-------TSVDQGILGIGYKTHE 131
Query: 134 VDG-VEPPFYNIIQQKLLEKNVFGFYLNR 161
+G + + Q ++ KN + YLN
Sbjct: 132 AEGNYDNVPVTLKNQGIISKNAYSLYLNS 160
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 29/118 (24%)
Query: 75 FAIRYGSGAVS-GYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG----- 128
F+I YG S G +DT+ G ++IKNQ F + + GI+G+G
Sbjct: 80 FSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVT-------TTSVDQGIMGIGFTADE 132
Query: 129 -----YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPK 181
YDN+ V + +Q ++ KN + YL N+E + G++ + K
Sbjct: 133 AGYNLYDNVPV--------TLKKQGIINKNAYSLYL---NSEDASTGKIIFGGVDNAK 179
>pdb|3LIZ|A Chain A, Crystal Structure Of Bla G 2 Complexed With Fab 4c3
Length = 334
Score = 34.3 bits (77), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P+V ++ G+NF ++ Y+ + + ++C SGF P + +GD F+ +Y
Sbjct: 264 LPDVTFVINGRNFNISSQYYIQQ----NGNLCYSGFQ----PCGHSDHFFIGDFFVDHYY 315
Query: 61 TVFDMDN 67
+ F+ +N
Sbjct: 316 SEFNWEN 322
>pdb|1YG9|A Chain A, The Structure Of Mutant (N93q) Of Bla G 2
pdb|2NR6|A Chain A, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
pdb|2NR6|B Chain B, Crystal Structure Of The Complex Of Antibody And The
Allergen Bla G 2
Length = 330
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 8/67 (11%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P+V ++ G+NF ++ Y+ + + ++C SGF P + +GD F+ +Y
Sbjct: 262 LPDVTFVINGRNFNISSQYYIQQ----NGNLCYSGFQ----PXGHSDHFFIGDFFVDHYY 313
Query: 61 TVFDMDN 67
+ F+ +N
Sbjct: 314 SEFNWEN 320
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 72 GTQFAIRYGSGAVS-GYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGY- 129
G F IRYG G+ S G +DT+ I ++I Q + + + GILG+GY
Sbjct: 71 GAAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQ-------TSVDQGILGIGYT 123
Query: 130 DNIAV-----DGVEPPFYNI----IQQKLLEKNVFGFYLNRYNTE 165
N AV P + N+ +Q + N + YLN + E
Sbjct: 124 SNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAE 168
>pdb|1ADJ|A Chain A, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|B Chain B, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|C Chain C, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADJ|D Chain D, Histidyl-Trna Synthetase In Complex With Histidine
pdb|1ADY|A Chain A, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|B Chain B, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|C Chain C, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1ADY|D Chain D, Histidyl-Trna Synthetase In Complex With
Histidyl-Adenylate
pdb|1H4V|B Chain B, Histidyl-Trna Synthetase From Thermus Thermophilus (Ligand
Free)
Length = 421
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 71 NGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIK 110
G + A++ G+ A +G+L +D LR G++T+K GE ++
Sbjct: 368 KGLEEALKRGA-AFAGFLGEDELRAGEVTLKRLATGEQVR 406
>pdb|3N9Y|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Y|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With
Cholesterol
pdb|3N9Z|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3N9Z|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 22-
Hydroxycholesterol
pdb|3NA1|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
pdb|3NA1|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20-
Hydroxycholesterol
Length = 487
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 80 GSGAVSGYLSQDTLRIGDLTIKNQVFGE--AIKEPGFTFVAAKF-DGILGMGYDNIAVDG 136
GSG SG +S D R +I N +FGE + E A +F D I M + ++ +
Sbjct: 150 GSGNYSGDISDDLFRFAFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVPMLN 209
Query: 137 VEPPFYNIIQQKLLEKNVFGF 157
+ P + + + K + +V +
Sbjct: 210 LPPDLFRLFRTKTWKDHVAAW 230
>pdb|3NA0|A Chain A, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
pdb|3NA0|B Chain B, Crystal Structure Of Human Cyp11a1 In Complex With 20,22-
Dihydroxycholesterol
Length = 471
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 80 GSGAVSGYLSQDTLRIGDLTIKNQVFGE--AIKEPGFTFVAAKF-DGILGMGYDNIAVDG 136
GSG SG +S D R +I N +FGE + E A +F D I M + ++ +
Sbjct: 147 GSGNYSGDISDDLFRFAFESITNVIFGERQGMLEEVVNPEAQRFIDAIYQMFHTSVPMLN 206
Query: 137 VEPPFYNIIQQKLLEKNVFGF 157
+ P + + + K + +V +
Sbjct: 207 LPPDLFRLFRTKTWKDHVAAW 227
>pdb|3MZS|A Chain A, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|B Chain B, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|C Chain C, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
pdb|3MZS|D Chain D, Crystal Structure Of Cytochrome P450 Cyp11a1 In Complex
With 22- Hydroxy-Cholesterol
Length = 486
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 80 GSGAVSGYLSQDTLRIGDLTIKNQVFGEAIK--EPGFTFVAAKF-DGILGMGYDNIAVDG 136
GSG G + +D +I N +FGE + E A KF D + M + ++ +
Sbjct: 152 GSGKFVGDIKEDLFHFAFESITNVMFGERLGMLEETVNPEAQKFIDAVYKMFHTSVPLLN 211
Query: 137 VEPPFYNIIQQKLLEKNVFGF 157
V P Y + + K +V +
Sbjct: 212 VPPELYRLFRTKTWRDHVAAW 232
>pdb|3GAA|A Chain A, The Crystal Structure Of The Protein With Unknown Function
From Thermoplasma Acidophilum
pdb|3GAA|B Chain B, The Crystal Structure Of The Protein With Unknown Function
From Thermoplasma Acidophilum
pdb|3GAA|C Chain C, The Crystal Structure Of The Protein With Unknown Function
From Thermoplasma Acidophilum
pdb|3GAA|D Chain D, The Crystal Structure Of The Protein With Unknown Function
From Thermoplasma Acidophilum
pdb|3GAA|E Chain E, The Crystal Structure Of The Protein With Unknown Function
From Thermoplasma Acidophilum
Length = 252
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 139 PPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAH 178
PP + KL ++ F Y N NT +A EVPI SAH
Sbjct: 65 PPVAVFVGGKL--RHPFRIYANNSNTVLVAMCEVPISSAH 102
>pdb|2AZT|A Chain A, Crystal Structure Of H176n Mutant Of Human Glycine
N-Methyltransferase
pdb|2AZT|B Chain B, Crystal Structure Of H176n Mutant Of Human Glycine
N-Methyltransferase
Length = 295
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGE--VPIPSAHDPKELESR 186
YD+I G PP NI + L K+V L N + + V +P A + S
Sbjct: 180 YDHILSTGCAPPGKNIYYKSDLTKDVTTSVLIVNNKAHMVTLDYTVQVPGA---GQDGSP 236
Query: 187 IENKYQLPEYDHVGDGCSASYTEMQQ 212
+K++L Y H C AS+TE+ Q
Sbjct: 237 GLSKFRLSYYPH----CLASFTELLQ 258
>pdb|1R74|A Chain A, Crystal Structure Of Human Glycine N-Methyltransferase
pdb|1R74|B Chain B, Crystal Structure Of Human Glycine N-Methyltransferase
Length = 294
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGE--VPIPSAHDPKELESR 186
YD+I G PP NI + L K+V L N + + V +P A + S
Sbjct: 179 YDHILSTGCAPPGKNIYYKSDLTKDVTTSVLIVNNKAHMVTLDYTVQVPGA---GQDGSP 235
Query: 187 IENKYQLPEYDHVGDGCSASYTEMQQ 212
+K++L Y H C AS+TE+ Q
Sbjct: 236 GLSKFRLSYYPH----CLASFTELLQ 257
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 77 IRYGSGAVSGYLSQDTLRIG---DLTIKNQVFGEAIKEPGFTFV-AAKFDGILGMGYDNI 132
+ Y G G L D + I +T++ + AI E F+ + ++GILG+ Y I
Sbjct: 70 VPYTQGKWEGELGTDLVSIPHGPQVTVRANI--AAITESDKFFIQGSNWEGILGLAYAEI 127
Query: 133 AV--DGVEPPFYNIIQQKLLEKNVFGFYL 159
A D +EP F ++++Q + N+F L
Sbjct: 128 ARPDDSLEPFFDSLVKQTHV-PNLFSLQL 155
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 77 IRYGSGAVSGYLSQDTLRIG---DLTIKNQVFGEAIKEPGFTFV-AAKFDGILGMGYDNI 132
+ Y G G L D + I +T++ + AI E F+ + ++GILG+ Y I
Sbjct: 69 VPYTQGKWEGELGTDLVSIPHGPQVTVRANI--AAITESDKFFIQGSNWEGILGLAYAEI 126
Query: 133 AV--DGVEPPFYNIIQQKLLEKNVFGFYL 159
A D +EP F ++++Q + N+F L
Sbjct: 127 ARPDDSLEPFFDSLVKQTHV-PNLFSLQL 154
>pdb|1QWL|A Chain A, Structure Of Helicobacter Pylori Catalase
pdb|1QWL|B Chain B, Structure Of Helicobacter Pylori Catalase
pdb|1QWM|A Chain A, Structure Of Helicobacter Pylori Catalase With Formic Acid
Bound
pdb|1QWM|B Chain B, Structure Of Helicobacter Pylori Catalase With Formic Acid
Bound
Length = 505
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 125 LGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKELE 184
LG+ Y I V+ PF++ + ++ +G L Y L G SA DPK
Sbjct: 347 LGVNYPQIPVNKPRCPFHSSSRDGYMQNGYYG-SLQNYTPSSLP-GYKEDKSARDPKFNL 404
Query: 185 SRIENKYQLPEYDHVGDGCSASYTE 209
+ IE ++++ +D+ D S YT+
Sbjct: 405 AHIEKEFEVWNWDYRADD-SDYYTQ 428
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 77 IRYGSGAVSGYLSQDTLRIG---DLTIKNQVFGEAIKEPGFTFV-AAKFDGILGMGYDNI 132
+ Y G G L D + I +T++ + AI E F+ + ++GILG+ Y I
Sbjct: 72 VPYTQGKWEGELGTDLVSIPHGPQVTVRANI--AAITESDKFFIQGSNWEGILGLAYAEI 129
Query: 133 AV--DGVEPPFYNIIQQKLLEKNVFGFYL 159
A D +EP F ++++Q + N+F L
Sbjct: 130 ARPDDSLEPFFDSLVKQTHV-PNLFSLQL 157
>pdb|3GWJ|A Chain A, Crystal Structure Of Antheraea Pernyi Arylphorin
pdb|3GWJ|B Chain B, Crystal Structure Of Antheraea Pernyi Arylphorin
pdb|3GWJ|C Chain C, Crystal Structure Of Antheraea Pernyi Arylphorin
pdb|3GWJ|D Chain D, Crystal Structure Of Antheraea Pernyi Arylphorin
pdb|3GWJ|E Chain E, Crystal Structure Of Antheraea Pernyi Arylphorin
pdb|3GWJ|F Chain F, Crystal Structure Of Antheraea Pernyi Arylphorin
Length = 674
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Query: 249 DQLETFWQLIRMDE---VYVRDKELTEEYNIPYHIQ-------HEDFKYEITIENNSNET 298
D+L TF++ D V++ ++EL +Y P++++ H+ F I I+ ++
Sbjct: 444 DKLVTFFEYYDFDATNTVFLTEEELKTKY--PHNLKVRQPRLNHQPFN--INIDIKADVA 499
Query: 299 KTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKF 333
+++IF+G K + G + L F E+D F
Sbjct: 500 TDAVVKIFMGPKYNENGFPITLENDWMKFFEMDWF 534
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,180,712
Number of Sequences: 62578
Number of extensions: 510862
Number of successful extensions: 1384
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1211
Number of HSP's gapped (non-prelim): 148
length of query: 336
length of database: 14,973,337
effective HSP length: 99
effective length of query: 237
effective length of database: 8,778,115
effective search space: 2080413255
effective search space used: 2080413255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)