RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3214
(336 letters)
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET:
BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP:
b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A*
1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Length = 329
Score = 169 bits (431), Expect = 2e-50
Identities = 61/104 (58%), Positives = 74/104 (71%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
+ NGT+FAI+YG+G++ GY+SQDTL IGDLTI Q F EA EPG TF KFDGILG+G
Sbjct: 66 KANGTEFAIQYGTGSLEGYISQDTLSIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLG 125
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
YD I+VD V PPFYN IQQ LL++ F FYL + + GE
Sbjct: 126 YDTISVDKVVPPFYNAIQQDLLDEKRFAFYLGDTSKDTENGGEA 169
Score = 109 bits (275), Expect = 9e-28
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 4/69 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ G NFT+ P DY L+VS C+S MD P P GP+ I+GD F+ K+Y
Sbjct: 258 LPDLIFNFNGYNFTIGPYDYTLEVS----GSCISAITPMDFPEPVGPLAIVGDAFLRKYY 313
Query: 61 TVFDMDNNQ 69
+++D+ NN
Sbjct: 314 SIYDLGNNA 322
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate;
2.35A {Homo sapiens}
Length = 351
Score = 165 bits (421), Expect = 1e-48
Identities = 45/104 (43%), Positives = 69/104 (66%), Gaps = 1/104 (0%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
+ G F+I+YG+G++SG + D + + LT+ Q FGE++ EPG TFV A+FDGILG+G
Sbjct: 76 SQPGQSFSIQYGTGSLSGIIGADQVSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLG 135
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
Y ++AV GV P F N++ Q L++ +F Y++ N E A E+
Sbjct: 136 YPSLAVGGVTPVFDNMMAQNLVDLPMFSVYMSS-NPEGGAGSEL 178
Score = 113 bits (284), Expect = 6e-29
Identities = 37/69 (53%), Positives = 47/69 (68%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
MP+V + G +TL+PT Y L + C SGF G+DI PPAGP+WILGDVFI +FY
Sbjct: 267 MPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFY 326
Query: 61 TVFDMDNNQ 69
+VFD NN+
Sbjct: 327 SVFDRGNNR 335
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2
PDB: 1avf_A
Length = 329
Score = 164 bits (417), Expect = 2e-48
Identities = 37/104 (35%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
NG F+++YGSG+++G+ DTL + + + NQ FG + EPG FV A+FDGI+G+
Sbjct: 65 STNGQTFSLQYGSGSLTGFFGYDTLTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLA 124
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
Y ++VD ++Q+ L VF YL+ G V
Sbjct: 125 YPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSS--GGAV 166
Score = 105 bits (265), Expect = 2e-26
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAG-PIWILGDVFIGKF 59
+P++ I+ G F L P+ Y+L + C G + G P+WILGDVF+ +
Sbjct: 257 LPSLTFIINGVEFPLPPSSYILSNN----GYCTVGVEPTYLSSQNGQPLWILGDVFLRSY 312
Query: 60 YTVFDMDNNQ 69
Y+V+D+ NN+
Sbjct: 313 YSVYDLGNNR 322
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus
morhua} SCOP: b.50.1.2
Length = 324
Score = 161 bits (410), Expect = 2e-47
Identities = 40/97 (41%), Positives = 55/97 (56%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
+ G + YG+G + G L QDT+ +G + NQ GE+ EPG AA FDGILG+
Sbjct: 65 VETGKTVDLTYGTGGMRGILGQDTVSVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLA 124
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
Y +IA G P F N+ Q L+EK++F FYL+
Sbjct: 125 YPSIAAAGAVPVFDNMGSQSLVEKDLFSFYLSGGGAN 161
Score = 105 bits (264), Expect = 3e-26
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ + G L P+ Y+ + C SG +P +WI GDVF+ +Y
Sbjct: 253 LPDITFTINGVKQPLPPSAYIEG----DQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYY 308
Query: 61 TVFDMDNNQ 69
T++D NN+
Sbjct: 309 TIYDRTNNK 317
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa}
SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A*
1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E*
3utl_A
Length = 370
Score = 162 bits (411), Expect = 4e-47
Identities = 34/97 (35%), Positives = 58/97 (59%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
+ + +I YG+G+++G L DT+++G ++ NQ+FG + EPG A FDGILG+
Sbjct: 109 EATSQELSITYGTGSMTGILGYDTVQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLA 168
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
Y +I+ G P F N+ Q L+ +++F YL+ +
Sbjct: 169 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDS 205
Score = 111 bits (279), Expect = 5e-28
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 4/69 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ + G + L+P+ Y+L+ C SGF GMD+P +G +WILGDVFI ++Y
Sbjct: 299 LPDIVFTIDGVQYPLSPSAYILQDD----DSCTSGFEGMDVPTSSGELWILGDVFIRQYY 354
Query: 61 TVFDMDNNQ 69
TVFD NN+
Sbjct: 355 TVFDRANNK 363
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP:
b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Length = 323
Score = 159 bits (405), Expect = 1e-46
Identities = 34/97 (35%), Positives = 57/97 (58%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
Q G +I YG+G++ G L DT+ + ++ Q G + +EPG F A+FDGILGM
Sbjct: 67 QNLGKPLSIHYGTGSMQGILGYDTVTVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMA 126
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
Y ++A + P F N++ + L+ +++F Y++R E
Sbjct: 127 YPSLASEYSIPVFDNMMNRHLVAQDLFSVYMDRNGQE 163
Score = 93.1 bits (232), Expect = 8e-22
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
MP V + GK + LTP+ Y + C SGF + WILGDVFI ++Y
Sbjct: 256 MPTVVFEINGKMYPLTPSAYTSQDQ----GFCTSGFQSENH----SQKWILGDVFIREYY 307
Query: 61 TVFDMDNNQ 69
+VFD NN
Sbjct: 308 SVFDRANNL 316
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen
structure, hydrolase; 2.30A {Hordeum vulgare} SCOP:
a.64.1.2 b.50.1.2
Length = 478
Score = 162 bits (412), Expect = 3e-46
Identities = 49/98 (50%), Positives = 71/98 (72%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
+KNG AI+YG+G+++GY S+D++ +GDL +K+Q F EA KEPG TF+ AKFDGILG+G
Sbjct: 106 KKNGKPAAIQYGTGSIAGYFSEDSVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLG 165
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK 166
+ I+V P +Y +I+Q L+ VF F+LNR+ E
Sbjct: 166 FKEISVGKAVPVWYKMIEQGLVSDPVFSFWLNRHVDEG 203
Score = 111 bits (278), Expect = 2e-27
Identities = 36/69 (52%), Positives = 51/69 (73%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
MP+++ +GGK F L P +Y+LKV +++ C+SGF MDIPPP GP+WILGDVF+G ++
Sbjct: 403 MPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYH 462
Query: 61 TVFDMDNNQ 69
TVFD +
Sbjct: 463 TVFDYGKLR 471
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC
BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Length = 239
Score = 155 bits (395), Expect = 4e-46
Identities = 42/98 (42%), Positives = 64/98 (65%), Gaps = 4/98 (4%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
++NGT AI YG+G+++G+ SQD++ IGDL +K Q F EA E F+ FDGILG+
Sbjct: 67 KENGTFGAIIYGTGSITGFFSQDSVTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLS 126
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK 166
+ I+V P +YN++ Q L+++ F F+LNR E+
Sbjct: 127 FQTISV----PVWYNMLNQGLVKERRFSFWLNRNVDEE 160
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex,
vasoconstrictor, glycoprotein, hypertension, serpins;
4.33A {Homo sapiens}
Length = 383
Score = 156 bits (396), Expect = 8e-45
Identities = 44/102 (43%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
+ NGT+ +RY +G VSG+LSQD + +G +T+ Q+FGE + P F+ A+FDG++GMG
Sbjct: 116 KHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFMLAEFDGVVGMG 174
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANG 170
+ A+ V P F NII Q +L+++VF FY NR + + G
Sbjct: 175 FIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLG 216
Score = 114 bits (286), Expect = 6e-29
Identities = 35/69 (50%), Positives = 43/69 (62%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ LGGK +TLT DYV + S +S +C MDIPPP GP W LG FI KFY
Sbjct: 308 LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFY 367
Query: 61 TVFDMDNNQ 69
T FD NN+
Sbjct: 368 TEFDRRNNR 376
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage
on PAIR of basic residues, disease mutation, disulfide
bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo
sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A*
1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A*
2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A*
3oot_A* ...
Length = 341
Score = 153 bits (389), Expect = 4e-44
Identities = 44/102 (43%), Positives = 67/102 (65%), Gaps = 1/102 (0%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
+ NGT+ +RY +G VSG+LSQD + +G +T+ Q+FGE + P F+ A+FDG++GMG
Sbjct: 73 KHNGTELTLRYSTGTVSGFLSQDIITVGGITV-TQMFGEVTEMPALPFMLAEFDGVVGMG 131
Query: 129 YDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANG 170
+ A+ V P F NII Q +L+++VF FY NR + + G
Sbjct: 132 FIEQAIGRVTPIFDNIISQGVLKEDVFSFYYNRDSENSQSLG 173
Score = 112 bits (283), Expect = 8e-29
Identities = 35/69 (50%), Positives = 43/69 (62%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++ LGGK +TLT DYV + S +S +C MDIPPP GP W LG FI KFY
Sbjct: 265 LPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFY 324
Query: 61 TVFDMDNNQ 69
T FD NN+
Sbjct: 325 TEFDRRNNR 333
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase;
2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Length = 375
Score = 151 bits (383), Expect = 5e-43
Identities = 27/98 (27%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKE-PGFTFVAAKFDGILGM 127
+K+GT+ I YGSG V G+ S+D + +G L++ + + + + +FDGILG+
Sbjct: 115 EKDGTKVDITYGSGTVKGFFSKDLVTLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGL 174
Query: 128 GYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
G+ ++++ ++P + Q ++ +F FYL ++
Sbjct: 175 GWKDLSIGSIDPIVVELKNQNKIDNALFTFYLPVHDVH 212
Score = 102 bits (256), Expect = 6e-25
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
MP ++ +TL P Y+ + ++C+ +DI +ILGD F+ K++
Sbjct: 302 MPTLEFKSANNTYTLEPEYYMNPILEVDDTLCMITMLPVDID---SNTFILGDPFMRKYF 358
Query: 61 TVFDMDNNQ 69
TVFD D
Sbjct: 359 TVFDYDKES 367
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex;
HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Length = 340
Score = 150 bits (381), Expect = 6e-43
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
+ ++ YGSG+ SG DT+ +G LTI Q G A ++ GF DGILG+G
Sbjct: 53 SATSDKVSVTYGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSGFDG----VDGILGVG 108
Query: 129 YDNIAVDGVEPP--------FYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
++ V + P N+ Q + N+ +E NGE+
Sbjct: 109 PVDLTVGTLSPHTSTSIPTVTDNLFSQGTIPTNLLAVSFEPTTSESSTNGEL 160
Score = 98.6 bits (246), Expect = 1e-23
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 5/74 (6%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIA-----SSSMCLSGFAGMDIPPPAGPIWILGDVF 55
+ ++ +GG+ F LT + ++ S+S + G +I G F
Sbjct: 253 LQSLFFTIGGQTFELTANAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTF 312
Query: 56 IGKFYTVFDMDNNQ 69
+ +FY+V+D N +
Sbjct: 313 LERFYSVYDTTNKR 326
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus
microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E*
5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A
Length = 325
Score = 148 bits (376), Expect = 2e-42
Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 69 QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
Q +G ++I YG G + SG L++D + +G L IK Q A +E +F + DG+LG+
Sbjct: 67 QADGRTWSISYGDGSSASGILAKDNVNLGGLLIKGQTIELAKREAA-SFASGPNDGLLGL 125
Query: 128 GYDNI-AVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGEV 172
G+D I V GV+ P N+I Q L+ + +FG YL + GE
Sbjct: 126 GFDTITTVRGVKTPMDNLISQGLISRPIFGVYLGKAKNG--GGGEY 169
Score = 87.7 bits (218), Expect = 7e-20
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 8/69 (11%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+ + G +F ++P V + C++GF + I+GD F+ Y
Sbjct: 257 FKPLVFSINGASFQVSPDSLVFEEF---QGQCIAGFGYGN-----WGFAIIGDTFLKNNY 308
Query: 61 TVFDMDNNQ 69
VF+ +
Sbjct: 309 VVFNQGVPE 317
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl
protease, glycoprotein, hydrolase, signal, zymogen; HET:
IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB:
1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A*
1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A*
2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Length = 453
Score = 149 bits (378), Expect = 1e-41
Identities = 34/99 (34%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPG--FTFVAAKFDGILG 126
+K+GT+ + Y SG VSG+ S+D + +G+L++ + F E I G T+ A+ FDGILG
Sbjct: 191 EKDGTKVEMNYVSGTVSGFFSKDLVTVGNLSLPYK-FIEVIDTNGFEPTYTASTFDGILG 249
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
+G+ ++++ V+P + Q +E +F FYL ++
Sbjct: 250 LGWKDLSIGSVDPIVVELKNQNKIENALFTFYLPVHDKH 288
Score = 107 bits (270), Expect = 2e-26
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P + +TL P Y+ + +C+ G+D P P +ILGD F+ K++
Sbjct: 378 LPTFEFTSENGKYTLEPEYYLQHIEDVGPGLCMLNIIGLDFPVPT---FILGDPFMRKYF 434
Query: 61 TVFDMDNNQ 69
TVFD DN+
Sbjct: 435 TVFDYDNHS 443
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A
{Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A*
3fnu_A*
Length = 451
Score = 149 bits (377), Expect = 1e-41
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFT--FVAAKFDGILG 126
+K+ T + +G +SG S+D + IG L++ + F E + GF + + DG+ G
Sbjct: 190 EKDDTPVKLTSKAGTISGIFSKDLVTIGKLSVPYK-FIEMTEIVGFEPFYSESDVDGVFG 248
Query: 127 MGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
+G+ ++++ ++P + Q +E+ V+ YL N
Sbjct: 249 LGWKDLSIGSIDPYIVELKTQNKIEQAVYSIYLPPENKN 287
Score = 101 bits (254), Expect = 3e-24
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P ++ K +TL P Y+ + S++C+ +D+ ++LGD F+ K++
Sbjct: 377 LPTLEYRSPNKVYTLEPKQYLEPLENIFSALCMLNIVPIDLE---KNTFVLGDPFMRKYF 433
Query: 61 TVFDMDNNQ 69
TV+D DN+
Sbjct: 434 TVYDYDNHT 442
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus}
SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Length = 361
Score = 146 bits (371), Expect = 2e-41
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAK-----FDG 123
++ I YG+G +G +D++ +G T+K Q G T + DG
Sbjct: 72 KETDYNLNITYGTGGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDG 131
Query: 124 ILGMGYDNIAV------DGVEPPFYNIIQQKLLEKNVFGFYLNR 161
I G Y + D N+ +Q L+ VF Y+N
Sbjct: 132 IFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLISSPVFSVYMNT 175
Score = 91.0 bits (226), Expect = 8e-21
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMD-IPPPAGPIWILGDVFIGKF 59
++L + D + +S + SG M + P G +I+G++F+ F
Sbjct: 279 KTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFLRFF 338
Query: 60 YTVFDMDNNQ 69
V+D N+
Sbjct: 339 VNVYDFGKNR 348
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG;
1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Length = 330
Score = 145 bits (368), Expect = 3e-41
Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 3/99 (3%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
+G + +G+ G +D+L I LT Q A E D ++G+
Sbjct: 69 ISDGNVQVKFFDTGSAVGRGIEDSLTISQLTTSQQDIVLA-DELSQEVCILSADVVVGIA 127
Query: 129 YDNIA-VDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK 166
+ N +++ L+ VF + R+ +
Sbjct: 128 APGCPNALKGKTVLENFVEENLI-APVFSIHHARFQDGE 165
Score = 91.2 bits (227), Expect = 4e-21
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P+V ++ G+NF ++ Y+ + ++C SGF P + +GD F+ +Y
Sbjct: 262 LPDVTFVINGRNFNISSQYYIQQNG----NLCYSGF----QPCGHSDHFFIGDFFVDHYY 313
Query: 61 TVFDMDNNQ 69
+ F+ +N
Sbjct: 314 SEFNWENKT 322
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO;
3.10A {Homo sapiens}
Length = 383
Score = 140 bits (354), Expect = 1e-38
Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKNQVFGEA--IKEPGFTFVAAKFDGILG 126
+ G ++Y G+ +G++ +D + I + + A + F K++GILG
Sbjct: 62 RSKGFDVTVKYTQGSWTGFVGEDLVTIPKGFNTSFLVNIATIFESENFFLPGIKWNGILG 121
Query: 127 MGYDNIAV--DGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEKLANGE 171
+ Y +A +E F +++ Q + NVF + +G
Sbjct: 122 LAYATLAKPSSSLETFFDSLVTQANI-PNVFSMQMCGAGLPVAGSGT 167
Score = 84.9 bits (210), Expect = 1e-18
Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 10/75 (13%)
Query: 1 MPNVDIILGGKN------FTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDV 54
P + I L +N T+ P Y+ + L+ P+ ++G
Sbjct: 278 FPKISIYLRDENSSRSFRITILPQLYIQPMM----GAGLNYECYRFGISPSTNALVIGAT 333
Query: 55 FIGKFYTVFDMDNNQ 69
+ FY +FD +
Sbjct: 334 VMEGFYVIFDRAQKR 348
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl
protease, hydrolase; 1.70A {Trichoderma reesei} PDB:
3c9y_A* 3emy_A*
Length = 329
Score = 135 bits (342), Expect = 2e-37
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 6/97 (6%)
Query: 69 QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
+ +G ++I YG G + SG + D + IG ++ Q A + G++G+
Sbjct: 69 KVSGASWSISYGDGSSSSGDVYTDKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGL 128
Query: 128 GYDNIAVDGVEPP---FYNIIQQKLLEKNVFGFYLNR 161
+D+ P F N L + +F L
Sbjct: 129 AFDSGNQVRPHPQKTWFSNAASS--LAEPLFTADLRH 163
Score = 88.1 bits (219), Expect = 5e-20
Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P+ +G T+ L SS C G I I GDV +
Sbjct: 259 LPSFSFGVGSSTITIPGDLLNLTPLEEGSSTCFGGLQS----SSGIGINIFGDVALKAAL 314
Query: 61 TVFDMDNNQ 69
VFD+ N +
Sbjct: 315 VVFDLGNER 323
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET:
MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB:
1ize_A*
Length = 323
Score = 133 bits (336), Expect = 2e-36
Identities = 22/96 (22%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 69 QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
+ +G ++I YG G + SG + +D + +G ++ +Q A K DG+LG+
Sbjct: 65 KIDGATWSISYGDGSSASGDVYKDKVTVGGVSYDSQAVESAEKVSSEFTQDTANDGLLGL 124
Query: 128 GYDNIAVDGVEP--PFYNIIQQKLLEKNVFGFYLNR 161
+ +I P F++ ++ L + +F L
Sbjct: 125 AFSSINTVQPTPQKTFFDNVKS-SLSEPIFAVALKH 159
Score = 85.0 bits (211), Expect = 7e-19
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P+ + +G T+ + F G+ I GDVF+ Y
Sbjct: 254 LPDFSVTIGDYTATVPGEYISFADV--GNGQT---FGGIQSNSG-IGFSIFGDVFLKSQY 307
Query: 61 TVFDMDNNQ 69
VFD +
Sbjct: 308 VVFDASGPR 316
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors,
macrocycle; HET: MAN PP7; 0.95A {Penicillium
janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E*
1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A*
2web_A* 2wec_A* 2wed_A* 3app_A
Length = 323
Score = 131 bits (333), Expect = 5e-36
Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 69 QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
+ +G ++I YG G + SG + D++ +G +T Q A + DG+LG+
Sbjct: 65 ELSGYTWSISYGDGSSASGNVFTDSVTVGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGL 124
Query: 128 GYDNIAV--DGVEPPFYNIIQQKLLEKNVFGFYLNR 161
+ +I + F++ ++ L + +F L
Sbjct: 125 AFSSINTVQPQSQTTFFDTVKS-SLAQPLFAVALKH 159
Score = 89.6 bits (223), Expect = 2e-20
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P+ + + G T+ + S S CL G I GD+F+ Y
Sbjct: 253 LPDFSVSISGYTATVPGSLINYGPS-GDGSTCLGGIQS----NSGIGFSIFGDIFLKSQY 307
Query: 61 TVFDMDNNQ 69
VFD D Q
Sbjct: 308 VVFDSDGPQ 316
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A
{Aspergillus phoenicis} SCOP: b.50.1.2
Length = 325
Score = 131 bits (333), Expect = 5e-36
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 69 QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
+ +G + I YG G + SG + +DT+ +G +T Q A K DG+LG+
Sbjct: 64 KLSGYSWDISYGDGSSASGDVYRDTVTVGGVTTNKQAVEAASKISSEFVQDTANDGLLGL 123
Query: 128 GYDNIAV---DGVEPPFYNIIQQKLLEKNVFGFYLNR 161
+ +I F + Q L+ +F L
Sbjct: 124 AFSSINTVQPKAQTTFFDTVKSQ--LDSPLFAVQLKH 158
Score = 93.1 bits (232), Expect = 1e-21
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P+ +++G + SS C G + ILGDVF+ Y
Sbjct: 254 LPDFTVVIGDYKAVVPGKYINYAPVSTGSSTCYGGI----QSNSGLGLSILGDVFLKSQY 309
Query: 61 TVFDMDNNQ 69
VF+ + +
Sbjct: 310 VVFNSEGPK 318
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic
resolution, succinimide, anisotropic refinement; HET:
SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB:
1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A*
2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A*
1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...
Length = 329
Score = 131 bits (332), Expect = 7e-36
Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
Query: 70 KNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMG 128
+G ++I YG G + SG + DT+ +G LT+ Q A K + DG+LG+
Sbjct: 69 LSGATWSISYGDGSSSSGDVYTDTVSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLA 128
Query: 129 YDNIAVDGVEP--PFYNIIQQKLLEKNVFGFYLNR 161
+ + F++ + L+ VF L
Sbjct: 129 FSTLNTVSPTQQKTFFDNA-KASLDSPVFTADLGY 162
Score = 86.9 bits (216), Expect = 1e-19
Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 6/76 (7%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P+ +G + SS C G I I GDV + +
Sbjct: 258 LPSFTFGVGSARIVIPGDYIDFGPISTGSSSCFGGIQS----SAGIGINIFGDVALKAAF 313
Query: 61 TVFDMDNNQKNGTQFA 76
VF+ G FA
Sbjct: 314 VVFNGATTPTLG--FA 327
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of
basic residues, glycoprotein, protease, secreted; HET:
STA; 2.50A {Candida albicans}
Length = 342
Score = 127 bits (321), Expect = 3e-34
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Query: 69 QKNGTQFAIRYGSGA-VSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
Q T+F I+YG G+ G L +DT+ IG +++++Q+F + + GILG+
Sbjct: 74 QNLNTRFDIKYGDGSYAKGKLYKDTVGIGGVSVRDQLFANV-------WSTSARKGILGI 126
Query: 128 GYDNIAVDGVEPP--FYNIIQQKLLEKNVFGFYLNRYNTE 165
G+ + + ++ Q ++ K + YLN
Sbjct: 127 GFQSGEATEFDYDNLPISLRNQGIIGKAAYSLYLNSAEAS 166
Score = 91.3 bits (227), Expect = 4e-21
Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 5/70 (7%)
Query: 1 MPNVDI-ILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKF 59
+D ++ ++++ + F ++ ILGD F+
Sbjct: 259 SGTIDFQFGNNLKISVPVSEFLFQTY----YTSGKPFPKCEVRIRESEDNILGDNFLRSA 314
Query: 60 YTVFDMDNNQ 69
Y V+++D+ +
Sbjct: 315 YVVYNLDDKK 324
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A
3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Length = 342
Score = 127 bits (320), Expect = 4e-34
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 69 QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
Q T F I YG G + G L +DT+ G ++IKNQV + + GILG+
Sbjct: 74 QDLNTPFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQVLADVDST-------SIDQGILGV 126
Query: 128 GYDNIAVDGVEPP-FYNIIQQKLLEKNVFGFYLNRYNTE 165
GY G + +Q ++ KN + YLN +
Sbjct: 127 GYKTNEAGGSYDNVPVTLKKQGVIAKNAYSLYLNSPDAA 165
Score = 90.5 bits (225), Expect = 8e-21
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 5/70 (7%)
Query: 1 MPNVDI-ILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKF 59
+V ++ +++ + + + ILGD F+
Sbjct: 259 SGDVVFNFSKNAKISVPASEFAASLQ----GDDGQPYDKCQLLFDVNDANILGDNFLRSA 314
Query: 60 YTVFDMDNNQ 69
Y V+D+D+N+
Sbjct: 315 YIVYDLDDNE 324
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic
protease, SAPT1, hydrolase; 1.80A {Candida tropicalis}
SCOP: b.50.1.2
Length = 334
Score = 125 bits (316), Expect = 1e-33
Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 69 QKNGTQFAIRYGSG-AVSGYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
Q F+I YG + G +DT+ G ++IKNQ F + + GI+G+
Sbjct: 74 QNLNQDFSIEYGDLTSSQGSFYKDTVGFGGISIKNQQFADVTTT-------SVDQGIMGI 126
Query: 128 GYDNIAV--DGVEPPFYNIIQQKLLEKNVFGFYLNRYNTE 165
G+ + + + +Q ++ KN + YLN +
Sbjct: 127 GFTADEAGYNLYDNVPVTLKKQGIINKNAYSLYLNSEDAS 166
Score = 82.0 bits (203), Expect = 8e-18
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 10/70 (14%)
Query: 1 MPNVDI-ILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKF 59
+ G T+ ++ +LK S SS+C G + D ILGD F+ +
Sbjct: 257 SGDAVFNFDQGVKITVPLSELILKDS--DSSICYFGISRNDA-------NILGDNFLRRA 307
Query: 60 YTVFDMDNNQ 69
Y V+D+D+
Sbjct: 308 YIVYDLDDKT 317
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET:
TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A*
3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A*
2va7_A* 2va5_A* 2va6_A*
Length = 455
Score = 126 bits (317), Expect = 5e-33
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRI--GDLTIKNQVFGEAIKEPGFTFVAAKFDGILG 126
+ + Y G G L D + I G + F + ++GILG
Sbjct: 123 RDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILG 182
Query: 127 MGYDNIAV--DGVEPPFYNIIQQKLLEKNVFGFYLNR 161
+ Y IA D +EP F ++++Q + N+F L
Sbjct: 183 LAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCG 218
Score = 82.7 bits (204), Expect = 9e-18
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 13/77 (16%)
Query: 1 MPNVDIILGGK------NFTLTPTDYVLKVSIA--SSSMCLSGFAGMDIPPPAGPIWILG 52
P + + L G+ T+ P Y+ V S C + ++G
Sbjct: 342 FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFA-----ISQSSTGTVMG 396
Query: 53 DVFIGKFYTVFDMDNNQ 69
V + FY VFD +
Sbjct: 397 AVIMEGFYVVFDRARKR 413
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl
protease, glycoprotein, hydrolase, membrane,
transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo
sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A*
2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A*
3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A
2zhs_A 2zhr_A 2zhu_A ...
Length = 395
Score = 125 bits (314), Expect = 6e-33
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 5/97 (5%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRI--GDLTIKNQVFGEAIKEPGFTFVAAKFDGILG 126
+ + Y G G L D + I G + F + ++GILG
Sbjct: 70 RDLRKGVYVPYTQGKWEGELGTDLVSIPHGPNVTVRANIAAITESDKFFINGSNWEGILG 129
Query: 127 MGYDNIAV--DGVEPPFYNIIQQKLLEKNVFGFYLNR 161
+ Y IA D +EP F ++++Q + N+F L
Sbjct: 130 LAYAEIARPDDSLEPFFDSLVKQTHVP-NLFSLQLCG 165
Score = 82.2 bits (203), Expect = 1e-17
Identities = 16/77 (20%), Positives = 26/77 (33%), Gaps = 13/77 (16%)
Query: 1 MPNVDIILGGK------NFTLTPTDYVLKVS--IASSSMCLSGFAGMDIPPPAGPIWILG 52
P + + L G+ T+ P Y+ V S C + ++G
Sbjct: 289 FPVISLYLMGEVTNQSFRITILPQQYLRPVEDVATSQDDCYKFA-----ISQSSTGTVMG 343
Query: 53 DVFIGKFYTVFDMDNNQ 69
V + FY VFD +
Sbjct: 344 AVIMEGFYVVFDRARKR 360
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A
{Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Length = 241
Score = 120 bits (302), Expect = 2e-32
Identities = 39/71 (54%), Positives = 54/71 (76%)
Query: 96 GDLTIKNQVFGEAIKEPGFTFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVF 155
G + ++ QVFGEA K+PG TF+AAKFDGILGM Y I+V+ V P F N++QQKL+++N+F
Sbjct: 1 GGVKVERQVFGEATKQPGITFIAAKFDGILGMAYPRISVNNVLPVFDNLMQQKLVDQNIF 60
Query: 156 GFYLNRYNTEK 166
FYL+R +
Sbjct: 61 SFYLSRDPDAQ 71
Score = 112 bits (283), Expect = 1e-29
Identities = 45/69 (65%), Positives = 57/69 (82%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P + + LGGK + L+P DY LKVS A ++CLSGF GMDIPPP+GP+WILGDVFIG++Y
Sbjct: 166 LPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYY 225
Query: 61 TVFDMDNNQ 69
TVFD DNN+
Sbjct: 226 TVFDRDNNR 234
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease,
virulence factor, H; HET: STA; 1.85A {Candida
parapsilosis} PDB: 3tne_A*
Length = 339
Score = 120 bits (302), Expect = 1e-31
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 69 QKNGTQFAIRYGSGAVS-GYLSQDTLRIGDLTIKNQVFGEAIKEPGFTFVAAKFDGILGM 127
+ G F IRYG G+ S G +DT+ I ++I Q + + + GILG+
Sbjct: 68 KNLGAAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQT-------SVDQGILGI 120
Query: 128 GYD------NIAVDGVEPPFYNI----IQQKLLEKNVFGFYLNRYNTE 165
GY + + P + N+ +Q + N + YLN + E
Sbjct: 121 GYTSNEAVYDTSGRQTTPNYDNVPVTLKKQGKIRTNAYSLYLNSPSAE 168
Score = 85.5 bits (212), Expect = 4e-19
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 10/69 (14%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
V G T+ T+YV + CL G D ILGD F+ Y
Sbjct: 264 GTTVFNFGNGAKITVPNTEYVYQNG---DGTCLWGIQPSDD-------TILGDNFLRHAY 313
Query: 61 TVFDMDNNQ 69
++++D N
Sbjct: 314 LLYNLDANT 322
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG
FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Length = 87
Score = 108 bits (272), Expect = 6e-30
Identities = 35/69 (50%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
MPNV +GGK F LTP Y+LKV ++ C+SGF MD GP+WILGDVF+ ++
Sbjct: 13 MPNVSFTIGGKKFGLTPEQYILKVGKGEATQCISGFTAMD-ATLLGPLWILGDVFMRPYH 71
Query: 61 TVFDMDNNQ 69
TVFD N
Sbjct: 72 TVFDYGNLL 80
>3ixv_A Hemocyanin AA6 chain; HC, phenolxoidase activity, tyrosinase (TY),
catecholoxidase (CO), enzyme, SDS, cryo-EM, single
particle analysis; 6.80A {Androctonus australis} PDB:
3ixw_A
Length = 626
Score = 90.8 bits (225), Expect = 2e-20
Identities = 38/110 (34%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 228 TLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIPY-HIQHEDFK 286
L +PGVE+ + I +K + + T + ++ + + + + Y H+ HE F
Sbjct: 382 ELSFPGVEVVGVSINSK--TANVITTLIKESLLELSHGINFGTDQSVKVKYHHLDHEPFT 439
Query: 287 YEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH 336
Y I +ENNS K +RIFL K D N+L QR LFIELDKF
Sbjct: 440 YNIVVENNSGAEKHSTVRIFLAPKYDELNNKLEPDEQRRLFIELDKFFYT 489
Score = 35.3 bits (81), Expect = 0.031
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 24/105 (22%)
Query: 159 LNRYNTEKLANG---------EVPIPSAHDPK--------ELESRIENKYQLPEYDHVGD 201
RY++E+L+NG + P + SR E Y + + V
Sbjct: 205 CARYDSERLSNGLQRMIPFHNFDEPLEGYAPHLTSLVSGLQYASRPEG-YSIHDLSDV-- 261
Query: 202 GCSASYTEMQQWTNNIIEAINQGYAVTLEYPGVELKSLRILNKQG 246
+M +W I++AIN Y V + + L + G
Sbjct: 262 ----DVQDMVRWRERILDAINMHYIVDKDNNKIPLDIEHGTDILG 302
>3hhs_B Propo-P1, phenoloxidase subunit 1; alpha helix, beta strand,
melanin biosynthesis, metal-bindin monooxygenase,
oxidoreductase, secreted; 1.97A {Manduca sexta}
Length = 684
Score = 90.8 bits (225), Expect = 3e-20
Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 228 TLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIPY-HIQHEDFK 286
L++PGV + S+ I + + L T WQ ++ D + H+QH++F+
Sbjct: 426 RLDFPGVRVSSVGI--EGARPNTLRTLWQQSTVELGRGLDFTPRGSVLARFTHLQHDEFQ 483
Query: 287 YEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH 336
Y I + N + G +RIF+ K D G + + QR L IELDKF
Sbjct: 484 YVIEVNNTTGGNLMGTVRIFMAPKVDDNGQPMSFNKQRRLMIELDKFSQA 533
Score = 40.7 bits (95), Expect = 5e-04
Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 19/88 (21%)
Query: 159 LNRYNTEKLANG----------EVPIPSAHDPK--------ELESRIENKYQLPEYDHVG 200
+ RYN E++ NG PI + PK R D
Sbjct: 242 IGRYNVERMCNGLPQVKPFSDFSAPIEEGYFPKLDSQVASRTWPPRFAG-SVFRNLDRTV 300
Query: 201 DGCSASYTEMQQWTNNIIEAINQGYAVT 228
D ++ W + +EAI +
Sbjct: 301 DQVKIDVRKLFTWRDQFLEAIQKMAIKM 328
>1lla_A Hemocyanin (subunit type II); oxygen transport; 2.18A {Limulus
polyphemus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB: 1nol_A
1ll1_A 1oxy_A
Length = 628
Score = 89.6 bits (222), Expect = 7e-20
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 228 TLEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIPY-HIQHEDFK 286
L +P ++++ + + + + TF + ++ + + Y H+ HE F
Sbjct: 385 VLNFPDIQVQDVTL--HARVDNVVHTFMREQELELKHGINPGNARSIKARYYHLDHEPFS 442
Query: 287 YEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH 336
Y + ++NNS K +RIFL K D GNE+ R IELDKF+
Sbjct: 443 YAVNVQNNSASDKHATVRIFLAPKYDELGNEIKADELRRTAIELDKFKTD 492
Score = 36.8 bits (85), Expect = 0.008
Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 34/123 (27%)
Query: 141 FYNIIQQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKELE---------------- 184
FY + QQ RY+ E+L+NG + ++ E
Sbjct: 200 FYYMHQQ----------MCARYDCERLSNGMHRMLPFNNFDEPLAGYAPHLTHVASGKYY 249
Query: 185 -SRIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYAVTLEYPGVELKSLRILN 243
R + +L + + +EM + I+++I+ GY ++ + L L +
Sbjct: 250 SPRPDG-LKLRDLGDI------EISEMVRMRERILDSIHLGYVISEDGSHKTLDELHGTD 302
Query: 244 KQG 246
G
Sbjct: 303 ILG 305
>3hhs_A Propo-P2, phenoloxidase subunit 2; alpha helix, beta strand,
melanin biosynthesis, metal-bindin monooxygenase,
oxidoreductase, secreted; 1.97A {Manduca sexta}
Length = 694
Score = 87.7 bits (217), Expect = 3e-19
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 229 LEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVYVRDKELTEEYNIPY-HIQHEDFKY 287
LE PGV++ S+ + + G + L TFW ++ D + H+ H F+Y
Sbjct: 432 LENPGVQVTSVAVESAGGQQNVLNTFWMQSDVNLSKGLDFSDRGPVYARFTHLNHRPFRY 491
Query: 288 EITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH 336
I NN+ + +RIF+ K D LS QR +FIE+D+F V
Sbjct: 492 VIKA-NNTASARRTTVRIFIAPKTDERNLPWALSDQRKMFIEMDRFVVP 539
Score = 42.3 bits (99), Expect = 2e-04
Identities = 22/88 (25%), Positives = 34/88 (38%), Gaps = 19/88 (21%)
Query: 159 LNRYNTEKLANG----------EVPIPSAHDPK--------ELESRIENKYQLPEYDHVG 200
+ RYN E+L N PIP A+ PK R + +
Sbjct: 248 IARYNCERLCNSLKRVKKFSDWREPIPEAYYPKLDSLTSARGWPPRQAG-MRWQDLKRPV 306
Query: 201 DGCSASYTEMQQWTNNIIEAINQGYAVT 228
DG + + +M+++ NI EAI G +
Sbjct: 307 DGLNVTIDDMERYRRNIEEAIATGNVIL 334
>1hc1_A Arthropodan hemocyanin; oxygen transport; 3.20A {Panulirus
interruptus} SCOP: a.85.1.1 a.86.1.1 b.1.18.3 PDB:
1hc2_A 1hc3_A 1hc4_A 1hc5_A 1hc6_A 1hcy_A*
Length = 657
Score = 86.1 bits (213), Expect = 1e-18
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 10/112 (8%)
Query: 229 LEYPGVELKSLRILNKQGPTDQLETFWQLIRMDEVY-VRDKELTEEYNIP---YHIQHED 284
LE+ G+ + + I + L TF+ + + V E E+ I + + H +
Sbjct: 406 LEFSGMVVNGVAIDGE------LITFFDEFQYSLINAVDSGENIEDVEINARVHRLNHNE 459
Query: 285 FKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH 336
F Y+IT+ NN++ + RIFL D G L L R IELDKF
Sbjct: 460 FTYKITMSNNNDGERLATFRIFLCPIEDNNGITLTLDEARWFCIELDKFFQK 511
Score = 37.6 bits (87), Expect = 0.005
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 32/122 (26%)
Query: 141 FYNIIQQKLLEKNVFGFYLNRYNTEKLANG---------EVPIPSAHDPK-------ELE 184
F+ + Q R++ E+L+N + I P E
Sbjct: 220 FFWVHHQ----------LTARFDFERLSNWLDPVDELHWDRIIREGFAPLTSYKYGGEFP 269
Query: 185 SRIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYAVTLEYPGVELKSLRILNK 244
R +N + D V +++ + I EAI+ GY + ++++ + +
Sbjct: 270 VRPDN-IHFEDVDGVAH-----VHDLEITESRIHEAIDHGYITDSDGHTIDIRQPKGIEL 323
Query: 245 QG 246
G
Sbjct: 324 LG 325
>3gwj_A Arylphorin; mono-glucosylated N-glycan, stability, glycosyla
glycoprotein, secreted, storage protein, oxygen
transport; HET: NAG BMA MAN GLC; 2.43A {Antheraea
pernyi}
Length = 674
Score = 79.2 bits (195), Expect = 2e-16
Identities = 26/116 (22%), Positives = 51/116 (43%), Gaps = 17/116 (14%)
Query: 229 LEYPGVELKSLRILNKQGPTDQLETFWQLIRMD---EVYVRDKELTEEYNIPY-----HI 280
L + GV++ ++ + D+L TF++ D V++ ++EL +Y +
Sbjct: 431 LHFVGVKVNNVVV-------DKLVTFFEYYDFDATNTVFLTEEELKTKYPHNLKVRQPRL 483
Query: 281 QHEDFKYEITIENNSNETKTGIMRIFLGAKNDIEGNELPLSAQRSLFIELDKFRVH 336
H+ F I I ++ +++IF+G K + G + L F E+D F
Sbjct: 484 NHQPFNINIDI--KADVATDAVVKIFMGPKYNENGFPITLENDWMKFFEMDWFTHK 537
Score = 36.1 bits (83), Expect = 0.015
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 31/100 (31%)
Query: 141 FYNIIQQKLLEKNVFGFYLNRYNTEKLANG---------EVPIPSAHDPK------ELES 185
++ Q L RY E+L NG P+ + H P
Sbjct: 243 YHYFYDQ----------LLTRYYFERLTNGLGTIPEFSWYSPVKTGHYPLLTSYYTPFSQ 292
Query: 186 RIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGY 225
R Y + ++ + + N ++A+ +G
Sbjct: 293 RPNF-YNVHSEENYEK-----IRFLDAYENYFVQALQKGV 326
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A
{Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Length = 97
Score = 55.5 bits (134), Expect = 3e-10
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 69 QKNGTQFAIRYGSGAVSGYLSQDTLRIGD 97
KNGT F I YGSG++SGYLSQDT+ +
Sbjct: 68 VKNGTSFDIHYGSGSLSGYLSQDTVSVPC 96
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein;
1.91A {Glycine max}
Length = 403
Score = 47.8 bits (113), Expect = 3e-06
Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 21/128 (16%)
Query: 73 TQFAIRYGSGAVS-GYLSQDTLRIGDLTIKNQVFGEAIKEPGFTF-----------VAAK 120
+ + G L +D L I Q G + P F F +
Sbjct: 95 GLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRN 154
Query: 121 FDGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNTEK--LANGEVPIPSAH 178
G+ G+G+ I+ N + + F L+RY T K + G+ P
Sbjct: 155 TQGVAGLGHAPIS-------LPNQLASHFGLQRQFTTCLSRYPTSKGAIIFGDAPNNMRQ 207
Query: 179 DPKELESR 186
+
Sbjct: 208 FQNQDIFH 215
Score = 44.8 bits (105), Expect = 2e-05
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 8/71 (11%)
Query: 2 PNVDIIL---GGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGK 58
P+VD+++ G + ++ D +++ CL G P LG + +
Sbjct: 314 PSVDLVMDKPNGPVWRISGEDLMVQAQ--PGVTCLGVMNGGMQP---RAEITLGARQLEE 368
Query: 59 FYTVFDMDNNQ 69
VFD+ ++
Sbjct: 369 NLVVFDLARSR 379
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 8e-05
Identities = 50/432 (11%), Positives = 119/432 (27%), Gaps = 144/432 (33%)
Query: 2 PNVDIIL----G-GKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWI-LGDVF 55
P ++++ G GK + + + S W+ L +
Sbjct: 149 PAKNVLIDGVLGSGKT--------WVALDVCLSYKVQCKM-------DFKIFWLNLKNCN 193
Query: 56 --------IGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLS--------QDTLRIGDLT 99
+ K D + ++ I+ ++ L ++ L +
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL-N 252
Query: 100 IKNQVFGEAIKEPGF---------TFVAAKFDGILGMGYDNIAVDGVEPPFYNIIQQKLL 150
++N +A F T D + +I++D ++
Sbjct: 253 VQNA---KAWN--AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT---PDEVK 304
Query: 151 EKNVFGFYLNRYNTEKLANGEVPIPSAHD--P----------KELESRIENKYQLPEYDH 198
+ YL+ ++P P ++ + +N ++ D
Sbjct: 305 S--LLLKYLD------CRPQDLP-REVLTTNPRRLSIIAESIRDGLATWDN-WKHVNCDK 354
Query: 199 VGDGCSASY-----TEMQQ----------------------WTNNIIEAINQGYAVTLEY 231
+ +S E ++ W + I +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKS--------DVMV 406
Query: 232 PGVELKSLRILNKQGPTD-------QLETFWQLIRMDEVYVRDKELTEEYNIPYHIQHED 284
+L ++ KQ LE ++++ Y + + + YNIP +D
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLEL---KVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 285 F------KYEIT-----IENNSNETKTGIMRI------FLGAKNDIEGNELPLSAQRS-- 325
+Y + ++N + + + R+ FL K I + +A S
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSIL 521
Query: 326 -LFIELDKFRVH 336
+L ++ +
Sbjct: 522 NTLQQLKFYKPY 533
Score = 28.7 bits (63), Expect = 3.1
Identities = 19/123 (15%), Positives = 36/123 (29%), Gaps = 27/123 (21%)
Query: 209 EMQQWTNNIIEAINQGYAVTLEYPGVELKSLRILNK-------QGPTDQLET---FWQLI 258
E Q +I+ + + V+ IL+K T FW L+
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL 72
Query: 259 R---------MDEVYVRD-----KELTEEYNIPYHIQHEDFKYEITIENNSNE--TKTGI 302
++EV + + E P + + + N N+ K +
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP-SMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 303 MRI 305
R+
Sbjct: 132 SRL 134
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase
inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB:
1t6g_A 2b42_A 3hd8_A
Length = 381
Score = 39.0 bits (90), Expect = 0.002
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 1 MPNVDIIL-GGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKF 59
+PNV + L GG ++T+T + ++ V ++ + G+ P ILG + F
Sbjct: 297 VPNVQLGLDGGSDWTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQMEDF 356
Query: 60 YTVFDMDNNQ 69
FDM+ +
Sbjct: 357 VLDFDMEKKR 366
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.008
Identities = 23/149 (15%), Positives = 41/149 (27%), Gaps = 39/149 (26%)
Query: 126 GMG---YDNIAVDGVEPPFYNIIQQKLLEK------NVFGFYLN---RYNTEKLANGEVP 173
GMG Y Q + + + +GF + N L
Sbjct: 1630 GMGMDLYKTSKA-----------AQDVWNRADNHFKDTYGFSILDIVINNPVNLT----- 1673
Query: 174 IPSAHDPKELESRIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYAVTL---E 230
H E RI Y ++ + DG + ++ + + L +
Sbjct: 1674 ---IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ 1730
Query: 231 Y--PG---VELKSLRILNKQGPTDQLETF 254
+ P +E + L +G TF
Sbjct: 1731 FTQPALTLMEKAAFEDLKSKGLIPADATF 1759
Score = 28.1 bits (62), Expect = 5.9
Identities = 21/110 (19%), Positives = 37/110 (33%), Gaps = 33/110 (30%)
Query: 2 PNVDII---LGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPI------WILG 52
P D+I L N + D +++ + + F G D+ +G I I+
Sbjct: 434 PASDLINKDLVKNNVSFNAKD--IQIPVYDT------FDGSDLRVLSGSISERIVDCIIR 485
Query: 53 DVFIGKFYTVFDMDNNQKNGTQFAIRYGSGAVSGYLSQDTLRIGDLTIKN 102
V + + + +G G SG +G LT +N
Sbjct: 486 L-------PV-KWETTTQFKATHILDFGPGGASG--------LGVLTHRN 519
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A
{Daucus carota} PDB: 3vlb_A
Length = 413
Score = 36.8 bits (84), Expect = 0.009
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 1 MPNVDIILGGKNFTLTPTDYVLKVSIASSSMCLSGFAGMDIPPPAGPIWILGDVFIGKFY 60
+P++D++L ++ T T V I + +CL +D ++G +
Sbjct: 327 VPSIDLVLQSESVVWTITGSNSMVYINDNVVCL---GVVDGGSNLRTSIVIGGHQLEDNL 383
Query: 61 TVFDMDNNQ 69
FD+ ++
Sbjct: 384 VQFDLATSR 392
Score = 34.9 bits (79), Expect = 0.030
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 20/103 (19%)
Query: 73 TQFAIRYGSGAVS-GYLSQDTLRIGDLTIKNQVFGEAIKEPGFTF----------VAAKF 121
F + G +++D + + + G + P F F +A+
Sbjct: 94 GVFPENPVINTATGGEVAEDVVSVE--STDGSSSGRVVTVPRFIFSCAPTSLLQNLASGV 151
Query: 122 DGILGMGYDNIAVDGVEPPFYNIIQQKLLEKNVFGFYLNRYNT 164
G+ G+G IA + K F L+ +
Sbjct: 152 VGMAGLGRTRIA-------LPSQFASAFSFKRKFAMCLSGSTS 187
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D
glucanase, hydrolase; HET: CT3; 2.08A {Clostridium
cellulovorans} PDB: 3ndy_E*
Length = 107
Score = 29.8 bits (67), Expect = 0.36
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 11/42 (26%)
Query: 202 GCSASYTEMQQW----------TNNIIEAINQGYAVTLEYPG 233
+Y W NN IN G+ + P
Sbjct: 2 AVEVTYAITNSWGSGASVNVTIKNNGTTPIN-GWTLKWTMPI 42
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics,
structural genomics consortium, SGC, alternative
splicing, RNA-binding; 1.75A {Homo sapiens}
Length = 94
Score = 28.6 bits (64), Expect = 0.78
Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 6/71 (8%)
Query: 181 KELESRIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYAVTLEYPG------V 234
E+ EN HVGD +A W + + + L +
Sbjct: 12 NEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDC 71
Query: 235 ELKSLRILNKQ 245
LK LR L
Sbjct: 72 PLKDLRALRSD 82
>1e5b_A Xylanase D; hydrolase, xylan binding domain, beta-sheet; NMR
{Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1e5c_A 1xbd_A
2xbd_A
Length = 87
Score = 28.2 bits (63), Expect = 1.1
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 6/37 (16%)
Query: 202 GCSASYTEMQQWTNN-----IIEAINQGYAVTLEYPG 233
GCS + T ++W++ + + + V L G
Sbjct: 2 GCSVTATRAEEWSDGFNVTYSVSGSS-AWTVNLALNG 37
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.6
Identities = 9/50 (18%), Positives = 16/50 (32%), Gaps = 25/50 (50%)
Query: 181 KELESRIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYAVTLE 230
K+L++ ++ Y + SA AI T+E
Sbjct: 23 KKLQASLK-LYA-DD--------SAPAL-----------AIK----ATME 47
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1
c.62.1.3 PDB: 1jeq_A* 3rzx_B
Length = 609
Score = 28.3 bits (62), Expect = 4.2
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 14/97 (14%)
Query: 142 YNIIQQKLL--EKNVFGFYLNRYNTEKLANG----------EVPIPSAHDPKELESRIEN 189
++ K++ ++++ Y TEK N E+ P A EL+
Sbjct: 68 QSVYISKIISSDRDLLAVVF--YGTEKDKNSVNFKNIYVLQELDNPGAKRILELDQFKGQ 125
Query: 190 KYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYA 226
+ Q D +G G S +E+ N+ + +
Sbjct: 126 QGQKRFQDMMGHGSDYSLSEVLWVCANLFSDVQFKMS 162
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.34.9.1
Length = 110
Score = 26.7 bits (59), Expect = 4.3
Identities = 10/51 (19%), Positives = 16/51 (31%)
Query: 181 KELESRIENKYQLPEYDHVGDGCSASYTEMQQWTNNIIEAINQGYAVTLEY 231
E+ EN HVGD +A W + + + L +
Sbjct: 17 NEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYF 67
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy,
RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1
PDB: 4a4e_A* 4a4g_A*
Length = 59
Score = 25.9 bits (57), Expect = 4.3
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 199 VGDGCSASYTEMQQWTNNIIEAIN-QGYAVTLEYPG------VELKSLR 240
VGD CSA ++E I +I+ + + Y G L L
Sbjct: 6 VGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLL 54
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize,
ISO-propanol, transcri; 1.78A {Homo sapiens} PDB:
3pmt_A*
Length = 54
Score = 25.4 bits (56), Expect = 4.7
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 198 HVGDGCSASYTEMQQWTNNIIEAIN-QGYAVTLEYPG------VELKSLR 240
GD C A Y E ++ +EA++ G +++ V L +++
Sbjct: 3 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIK 52
>3rko_N NADH-quinone oxidoreductase subunit N; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 485
Score = 27.3 bits (61), Expect = 7.3
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 11/34 (32%)
Query: 30 SMCLSGFAGMDIPPPAGPIWILGDVFIGKFYTVF 63
++ + AG IP G FIGKFY V
Sbjct: 377 TVMMLSLAG--IPMTLG--------FIGKFY-VL 399
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading
enzyme, criptidase, kinins, hydrolase; 1.96A {Homo
sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A
3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A
2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Length = 990
Score = 27.5 bits (60), Expect = 7.6
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 137 VEPPFYNII-QQKLLEKNVFGFYLNRYNTEKLANGEVPIPSAHDPKELESRIEN 189
+ P +N + ++ L VF I S P LESR+E
Sbjct: 786 ISEPAFNTLRTKEQLGYIVFSGPRRANGI---QGLRFIIQSEKPPHYLESRVEA 836
>3gri_A Dihydroorotase, dhoase; hydrolase, IDP00795, metal-binding,
pyrimidine biosynthesis, structural genomics; 2.00A
{Staphylococcus aureus subsp}
Length = 424
Score = 27.1 bits (61), Expect = 8.6
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 266 RDKELTEEYNIPYHIQH 282
RD L E YH+ H
Sbjct: 214 RDVLLAEAAGCHYHVCH 230
>3mpg_A Dihydroorotase, dhoase; hydrolase; 2.60A {Bacillus anthracis}
Length = 428
Score = 27.1 bits (61), Expect = 9.7
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 266 RDKELTEEYNIPYHIQH 282
RD L E + YH+ H
Sbjct: 215 RDILLAEAADCHYHVCH 231
>1xrt_A Dihydroorotase, dhoase; amidohydrolase, metalloenzyme, pyrimidine;
1.61A {Aquifex aeolicus} SCOP: b.92.1.3 c.1.9.6 PDB:
1xrf_A 3d6n_A*
Length = 467
Score = 27.1 bits (61), Expect = 9.9
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 266 RDKELTEEYNIPYHIQH 282
RD L + HIQH
Sbjct: 261 RDGILAQRTGGHVHIQH 277
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.139 0.410
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,357,416
Number of extensions: 333303
Number of successful extensions: 942
Number of sequences better than 10.0: 1
Number of HSP's gapped: 838
Number of HSP's successfully gapped: 113
Length of query: 336
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 242
Effective length of database: 4,077,219
Effective search space: 986686998
Effective search space used: 986686998
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.5 bits)