BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3215
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UUN|A Chain A, Crystal Structure Of N-Terminal First Spectrin Repeat Of
Dystrophin
pdb|3UUN|B Chain B, Crystal Structure Of N-Terminal First Spectrin Repeat Of
Dystrophin
Length = 119
Score = 34.3 bits (77), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Query: 36 RYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQL 95
RY +EV WL E+ +Q + +V++ Q + DL + ++ QL
Sbjct: 6 RYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQL 65
Query: 96 TQKLISVYQ--HDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQN 145
KLI + D+ T V++ +N R+ L + + + L+ + LQN
Sbjct: 66 GSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDLQN 117
>pdb|3VF2|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz M473i
Variant In Complex With Carbamoyl Phosphate And Adp
Length = 576
Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 14/57 (24%)
Query: 97 QKLISVYQHDDTTRVKKITEQVNQRYNN--------------LNTSIINRGKALNSA 139
++L SV D +TR + +TE N RY+ LNTS +RG+ + S+
Sbjct: 491 ERLPSVVHEDWSTRPQTVTEASNPRYHRMLTELGDLVGDPVCLNTSFNDRGEPIVSS 547
>pdb|3VEZ|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz K443a
Variant In Complex With Atp, Adp And Carbamoyl Phosphate
Length = 576
Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 14/57 (24%)
Query: 97 QKLISVYQHDDTTRVKKITEQVNQRYNN--------------LNTSIINRGKALNSA 139
++L SV D +TR + +TE N RY+ LNTS +RG+ + S+
Sbjct: 491 ERLPSVVHEDWSTRPQTVTEASNPRYHRMLTELGDLVGDPVCLNTSFNDRGEPIVSS 547
>pdb|3VEX|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz H14n
Variant In Complex With Carbamoyl Adenylate Intermediate
Length = 576
Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 14/57 (24%)
Query: 97 QKLISVYQHDDTTRVKKITEQVNQRYNN--------------LNTSIINRGKALNSA 139
++L SV D +TR + +TE N RY+ LNTS +RG+ + S+
Sbjct: 491 ERLPSVVHEDWSTRPQTVTEASNPRYHRMLTELGDLVGDPVCLNTSFNDRGEPIVSS 547
>pdb|3VER|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz In
Complex With Carbamoyl Adenylate Intermediate
Length = 576
Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 14/57 (24%)
Query: 97 QKLISVYQHDDTTRVKKITEQVNQRYNN--------------LNTSIINRGKALNSA 139
++L SV D +TR + +TE N RY+ LNTS +RG+ + S+
Sbjct: 491 ERLPSVVHEDWSTRPQTVTEASNPRYHRMLTELGDLVGDPVCLNTSFNDRGEPIVSS 547
>pdb|3VEN|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz
pdb|3VEO|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz In
Complex With Carbamoyl Phosphate
pdb|3VES|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz In
Complex With Ampcpp And Carbamoyl Phosphate
pdb|3VET|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz In
Complex With Tobramycin, Carbamoyl Phosphate And Adp
pdb|3VEW|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz In
Complex With Adp
Length = 576
Score = 28.5 bits (62), Expect = 2.3, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 14/57 (24%)
Query: 97 QKLISVYQHDDTTRVKKITEQVNQRYNN--------------LNTSIINRGKALNSA 139
++L SV D +TR + +TE N RY+ LNTS +RG+ + S+
Sbjct: 491 ERLPSVVHEDWSTRPQTVTEASNPRYHRMLTELGDLVGDPVCLNTSFNDRGEPIVSS 547
>pdb|4F3Z|B Chain B, Crystal Structure Of A Swine H1n2 Influenza Virus
Hemagglutinin
pdb|4F3Z|D Chain D, Crystal Structure Of A Swine H1n2 Influenza Virus
Hemagglutinin
pdb|4F3Z|F Chain F, Crystal Structure Of A Swine H1n2 Influenza Virus
Hemagglutinin
Length = 179
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 111 VKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDN-FL-AWLSEAE 161
+ IT +VN +NT I GK N ++N +K +D+ FL W AE
Sbjct: 45 IDGITNKVNSVIEKMNTQFIAVGKEFNHLEKRIENLNKKVDDGFLDIWTYNAE 97
>pdb|3VF4|A Chain A, Crystal Structure Of The O-Carbamoyltransferase Tobz S530a
Variant In Complex With Carbamoyl Phosphate And Adp
Length = 576
Score = 27.3 bits (59), Expect = 5.1, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 14/57 (24%)
Query: 97 QKLISVYQHDDTTRVKKITEQVNQRYNN--------------LNTSIINRGKALNSA 139
++L SV D +TR + +TE N RY+ LNT+ +RG+ + S+
Sbjct: 491 ERLPSVVHEDWSTRPQTVTEASNPRYHRMLTELGDLVGDPVCLNTAFNDRGEPIVSS 547
>pdb|2B1E|A Chain A, The Structures Of Exocyst Subunit Exo70p And The Exo84p C-
Terminal Domains Reveal A Common Motif
Length = 564
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 26/135 (19%)
Query: 26 QLDSMLSDSQRYDAKRQ---EVDGWLTRMENRMQRMNPVGYTADVLEVQLREQK-SIHAD 81
+LD ML D Q A R+ E G LT +E ++R E QLR SI
Sbjct: 47 KLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRS----------EAQLRVYFISILNS 96
Query: 82 LHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSII------NRGKA 135
+ F QI +T+K+ Y D ++ ++ ++ + N SII R K
Sbjct: 97 IKPFDPQI----NITKKMPFPYYEDQ--QLGALSWILDYFHGNSEGSIIQDILVGERSKL 150
Query: 136 LNSAMSSLQNFDKSI 150
+ M+ L+ F K I
Sbjct: 151 ILKCMAFLEPFAKEI 165
>pdb|1L1L|A Chain A, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|B Chain B, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|C Chain C, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
pdb|1L1L|D Chain D, Crystal Structure Of B-12 Dependent (Class Ii)
Ribonucleotide Reductase
Length = 739
Score = 26.6 bits (57), Expect = 8.6, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 11 EHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRM 58
E+WDET +V+ LD L DS + K+ LT R+ ++
Sbjct: 46 ENWDETVKRVVEGNINLDPRLQDSPSLELKQS-----LTEEAERLYKL 88
>pdb|2PFV|A Chain A, S. Cerevisiae Exo70 With Additional Residues To 2.1
Angrstrom Resolution
Length = 563
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 57/135 (42%), Gaps = 26/135 (19%)
Query: 26 QLDSMLSDSQRYDAKRQ---EVDGWLTRMENRMQRMNPVGYTADVLEVQLREQK-SIHAD 81
+LD ML D Q A R+ E G LT +E ++R E QLR SI
Sbjct: 46 KLDDMLEDIQSGQANREENSEFHGILTHLEQLIKRS----------EAQLRVYFISILNS 95
Query: 82 LHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSII------NRGKA 135
+ F QI +T+K+ Y D ++ ++ ++ + N SII R K
Sbjct: 96 IKPFDPQI----NITKKMPFPYYEDQ--QLGALSWILDYFHGNSEGSIIQDILVGERSKL 149
Query: 136 LNSAMSSLQNFDKSI 150
+ M+ L+ F K I
Sbjct: 150 ILKCMAFLEPFAKEI 164
>pdb|3TC3|A Chain A, Crystal Structure Of Sacuvde
pdb|3TC3|B Chain B, Crystal Structure Of Sacuvde
pdb|4GLE|A Chain A, Sacuvde In Complex With 6-4pp-containing Dna
Length = 310
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 122 YNNLNTSIINRGKALNSAMS 141
++NL+ SI+N G++LN A+S
Sbjct: 219 FDNLHHSILNNGESLNDALS 238
>pdb|3M6S|B Chain B, Crystal Structure Of H1n1pdm Hemagglutinin
pdb|3M6S|D Chain D, Crystal Structure Of H1n1pdm Hemagglutinin
pdb|3M6S|F Chain F, Crystal Structure Of H1n1pdm Hemagglutinin
pdb|3M6S|H Chain H, Crystal Structure Of H1n1pdm Hemagglutinin
pdb|3M6S|J Chain J, Crystal Structure Of H1n1pdm Hemagglutinin
pdb|3M6S|L Chain L, Crystal Structure Of H1n1pdm Hemagglutinin
Length = 181
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 111 VKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDN-FL-AWLSEAE 161
+ +IT +VN +NT GK N ++N +K ID+ FL W AE
Sbjct: 45 IDEITNKVNSVIEKMNTQFTAVGKEFNHLEKRIENLNKKIDDGFLDIWTYNAE 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.127 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,678,816
Number of Sequences: 62578
Number of extensions: 158859
Number of successful extensions: 549
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 42
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)