Query psy3215
Match_columns 186
No_of_seqs 106 out of 916
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 19:15:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0517|consensus 99.8 9E-18 1.9E-22 153.5 21.5 162 1-166 600-761 (2473)
2 KOG0517|consensus 99.8 3.9E-17 8.5E-22 149.4 19.3 162 2-168 707-871 (2473)
3 cd00176 SPEC Spectrin repeats, 99.8 1.1E-16 2.3E-21 121.4 18.5 134 34-170 2-135 (213)
4 cd00176 SPEC Spectrin repeats, 99.7 4.8E-16 1E-20 117.8 19.3 136 2-139 77-212 (213)
5 PF00435 Spectrin: Spectrin re 99.7 3.5E-15 7.6E-20 101.1 15.0 104 33-138 2-105 (105)
6 smart00150 SPEC Spectrin repea 99.7 5.2E-15 1.1E-19 99.7 13.4 100 36-137 2-101 (101)
7 KOG0040|consensus 99.6 2.1E-14 4.6E-19 130.0 17.4 161 2-166 120-280 (2399)
8 KOG0040|consensus 99.6 1.9E-13 4.1E-18 124.0 18.4 168 1-172 225-392 (2399)
9 KOG4286|consensus 99.5 4.9E-12 1.1E-16 108.9 20.3 161 8-168 75-254 (966)
10 KOG4286|consensus 99.1 2.4E-09 5.2E-14 92.7 15.9 149 3-155 198-347 (966)
11 KOG4240|consensus 96.0 0.67 1.4E-05 43.2 16.1 138 2-142 246-385 (1025)
12 PF12128 DUF3584: Protein of u 93.1 9.1 0.0002 37.1 21.2 133 7-142 717-859 (1201)
13 PF06008 Laminin_I: Laminin Do 92.8 4 8.6E-05 32.4 21.6 147 6-165 61-209 (264)
14 KOG0994|consensus 91.8 12 0.00027 35.8 20.5 27 109-135 1657-1683(1758)
15 PRK04863 mukB cell division pr 89.7 23 0.0005 35.3 21.3 31 141-171 442-472 (1486)
16 PF00435 Spectrin: Spectrin re 89.7 0.45 9.8E-06 31.1 3.3 28 142-169 2-29 (105)
17 PF04912 Dynamitin: Dynamitin 89.3 12 0.00026 31.5 13.9 82 81-167 306-387 (388)
18 COG0497 RecN ATPase involved i 87.8 19 0.00041 31.9 15.0 40 53-92 195-234 (557)
19 PF08580 KAR9: Yeast cortical 82.6 38 0.00083 30.9 15.9 125 2-136 240-368 (683)
20 PRK11637 AmiB activator; Provi 81.8 31 0.00068 29.3 22.3 54 3-56 46-99 (428)
21 PRK04863 mukB cell division pr 81.6 61 0.0013 32.5 21.1 128 41-168 913-1047(1486)
22 KOG0035|consensus 81.5 1.4 2.9E-05 40.7 2.9 132 35-167 397-535 (890)
23 TIGR02168 SMC_prok_B chromosom 81.0 52 0.0011 31.3 21.3 24 5-28 685-708 (1179)
24 PF07304 SRA1: Steroid recepto 80.3 20 0.00044 26.1 9.2 59 108-167 67-138 (157)
25 PRK02224 chromosome segregatio 79.9 52 0.0011 30.7 21.8 39 6-44 511-549 (880)
26 PF00261 Tropomyosin: Tropomyo 79.4 27 0.00059 27.2 20.1 25 74-98 142-166 (237)
27 KOG0995|consensus 79.3 45 0.00097 29.5 15.9 52 6-57 237-291 (581)
28 KOG0972|consensus 79.0 33 0.00071 27.8 11.3 73 75-152 254-326 (384)
29 PF12325 TMF_TATA_bd: TATA ele 78.8 19 0.00042 25.1 12.7 83 64-146 14-108 (120)
30 PF00261 Tropomyosin: Tropomyo 78.0 30 0.00066 26.9 20.3 51 6-56 3-53 (237)
31 PF04065 Not3: Not1 N-terminal 75.4 31 0.00067 27.0 8.4 86 6-93 21-108 (233)
32 KOG0994|consensus 75.2 85 0.0018 30.6 17.9 16 149-164 1662-1677(1758)
33 TIGR02338 gimC_beta prefoldin, 74.4 24 0.00052 23.9 9.5 73 67-139 28-100 (110)
34 PRK02224 chromosome segregatio 73.5 79 0.0017 29.5 22.0 19 109-127 649-667 (880)
35 COG5185 HEC1 Protein involved 73.3 62 0.0013 28.1 15.7 134 6-147 273-416 (622)
36 PF10805 DUF2730: Protein of u 73.3 26 0.00056 23.7 7.9 62 37-102 40-101 (106)
37 COG1382 GimC Prefoldin, chaper 73.3 28 0.00061 24.2 9.2 38 93-130 57-94 (119)
38 KOG0996|consensus 73.0 95 0.0021 30.1 20.6 58 78-136 445-502 (1293)
39 KOG0996|consensus 72.9 96 0.0021 30.1 20.5 128 36-167 824-961 (1293)
40 PRK03918 chromosome segregatio 72.2 84 0.0018 29.2 22.1 18 41-58 565-582 (880)
41 PF04912 Dynamitin: Dynamitin 72.1 58 0.0013 27.3 17.1 128 38-166 208-354 (388)
42 PF02403 Seryl_tRNA_N: Seryl-t 72.0 27 0.00058 23.4 12.7 87 52-140 15-101 (108)
43 PF06008 Laminin_I: Laminin Do 70.5 51 0.0011 26.0 18.4 166 6-171 19-201 (264)
44 PF06160 EzrA: Septation ring 69.2 83 0.0018 27.9 21.2 121 3-130 59-185 (560)
45 PF10168 Nup88: Nuclear pore c 69.1 95 0.0021 28.6 15.5 20 75-94 641-660 (717)
46 PF13851 GAS: Growth-arrest sp 67.5 53 0.0011 25.0 14.9 107 66-174 62-176 (201)
47 cd00632 Prefoldin_beta Prefold 67.4 35 0.00075 22.9 8.9 61 67-127 24-84 (105)
48 COG5185 HEC1 Protein involved 66.6 88 0.0019 27.2 14.8 90 3-92 294-394 (622)
49 KOG0977|consensus 65.3 1E+02 0.0022 27.4 16.6 57 2-58 118-174 (546)
50 PF12718 Tropomyosin_1: Tropom 65.3 48 0.001 23.8 18.4 99 68-168 37-135 (143)
51 PF10498 IFT57: Intra-flagella 64.4 85 0.0018 26.3 16.2 137 10-168 219-355 (359)
52 PRK09343 prefoldin subunit bet 64.1 46 0.00099 23.1 11.0 73 67-139 32-104 (121)
53 PF11802 CENP-K: Centromere-as 64.1 74 0.0016 25.4 14.2 111 48-165 32-144 (268)
54 PRK10869 recombination and rep 62.7 1.1E+02 0.0024 27.1 18.8 54 40-93 182-235 (553)
55 KOG0250|consensus 62.0 1.5E+02 0.0033 28.5 21.6 106 63-168 731-838 (1074)
56 PF10458 Val_tRNA-synt_C: Valy 62.0 34 0.00074 20.9 5.5 58 35-92 7-65 (66)
57 PF07889 DUF1664: Protein of u 61.3 55 0.0012 23.0 11.6 61 108-168 63-123 (126)
58 PRK09039 hypothetical protein; 59.0 1E+02 0.0022 25.5 22.5 70 68-142 118-187 (343)
59 cd07590 BAR_Bin3 The Bin/Amphi 58.7 85 0.0018 24.4 14.5 29 111-139 96-124 (225)
60 PF08317 Spc7: Spc7 kinetochor 57.8 1E+02 0.0023 25.2 17.0 111 21-139 140-256 (325)
61 TIGR00606 rad50 rad50. This fa 57.4 2.1E+02 0.0044 28.4 19.1 18 36-53 885-902 (1311)
62 PRK10722 hypothetical protein; 57.3 94 0.002 24.5 8.2 58 6-63 160-217 (247)
63 PF09730 BicD: Microtubule-ass 56.8 1.6E+02 0.0035 27.1 21.4 155 3-158 271-464 (717)
64 PF06160 EzrA: Septation ring 54.9 1.5E+02 0.0034 26.3 18.9 46 5-53 137-182 (560)
65 COG0419 SbcC ATPase involved i 54.8 1.9E+02 0.0042 27.3 20.5 92 37-129 282-377 (908)
66 PF11932 DUF3450: Protein of u 54.8 1E+02 0.0022 24.1 15.3 31 5-35 25-55 (251)
67 PF08657 DASH_Spc34: DASH comp 54.2 1.1E+02 0.0024 24.3 8.1 60 86-148 156-215 (259)
68 COG1196 Smc Chromosome segrega 53.9 2.2E+02 0.0048 27.8 22.7 45 111-155 374-418 (1163)
69 PF13942 Lipoprotein_20: YfhG 53.8 90 0.002 23.2 8.6 59 5-63 113-171 (179)
70 PF07544 Med9: RNA polymerase 52.7 60 0.0013 20.9 8.6 60 34-96 23-82 (83)
71 PF12761 End3: Actin cytoskele 52.4 1E+02 0.0022 23.4 12.2 92 37-139 101-193 (195)
72 PF12718 Tropomyosin_1: Tropom 51.4 88 0.0019 22.4 16.3 25 70-94 77-101 (143)
73 TIGR00634 recN DNA repair prot 50.7 1.8E+02 0.0039 25.8 17.8 79 10-92 160-238 (563)
74 PF12128 DUF3584: Protein of u 50.5 2.6E+02 0.0056 27.5 23.3 63 37-101 318-380 (1201)
75 PF05531 NPV_P10: Nucleopolyhe 50.2 65 0.0014 20.5 8.8 58 77-136 8-65 (75)
76 PRK04778 septation ring format 50.0 1.9E+02 0.0041 25.8 19.8 121 3-130 63-189 (569)
77 PRK08032 fliD flagellar cappin 49.9 1.3E+02 0.0028 26.0 8.4 51 109-159 409-459 (462)
78 COG1579 Zn-ribbon protein, pos 49.8 1.3E+02 0.0027 23.7 20.4 126 2-143 29-154 (239)
79 KOG3958|consensus 49.5 1.4E+02 0.0031 24.3 15.6 126 39-164 191-334 (371)
80 PF06320 GCN5L1: GCN5-like pro 48.8 89 0.0019 21.7 7.0 15 40-54 86-100 (121)
81 smart00503 SynN Syntaxin N-ter 48.6 79 0.0017 21.1 13.0 62 75-138 10-71 (117)
82 PF00804 Syntaxin: Syntaxin; 48.1 73 0.0016 20.5 9.4 66 72-139 6-71 (103)
83 COG4477 EzrA Negative regulato 47.3 2.1E+02 0.0044 25.4 18.9 145 4-153 139-293 (570)
84 PF07926 TPR_MLP1_2: TPR/MLP1/ 46.6 1E+02 0.0022 21.6 14.7 21 111-131 85-105 (132)
85 PF05957 DUF883: Bacterial pro 46.6 81 0.0017 20.6 8.1 16 78-93 3-18 (94)
86 KOG0933|consensus 45.8 2.9E+02 0.0062 26.7 22.8 89 10-99 683-774 (1174)
87 PF14643 DUF4455: Domain of un 45.7 2E+02 0.0044 24.9 16.4 77 62-140 200-276 (473)
88 KOG0250|consensus 44.8 3E+02 0.0065 26.6 20.7 37 21-57 277-313 (1074)
89 PF04642 DUF601: Protein of un 44.7 1.6E+02 0.0035 23.4 8.0 90 39-128 210-307 (311)
90 cd00179 SynN Syntaxin N-termin 44.6 1.1E+02 0.0024 21.5 12.6 9 145-153 96-104 (151)
91 TIGR00606 rad50 rad50. This fa 43.6 3.4E+02 0.0074 26.9 24.0 19 38-56 798-816 (1311)
92 PF10168 Nup88: Nuclear pore c 43.4 2.7E+02 0.0059 25.7 15.1 59 110-168 604-666 (717)
93 PRK04778 septation ring format 43.2 2.4E+02 0.0052 25.1 18.9 88 37-124 163-267 (569)
94 PF10392 COG5: Golgi transport 42.8 1.2E+02 0.0025 21.3 10.5 46 107-152 73-118 (132)
95 PRK09039 hypothetical protein; 42.7 2E+02 0.0042 23.9 16.5 15 41-55 48-62 (343)
96 KOG2391|consensus 42.7 2E+02 0.0043 24.0 7.8 17 143-159 262-278 (365)
97 PF08317 Spc7: Spc7 kinetochor 42.3 1.9E+02 0.0041 23.6 17.1 40 121-160 217-256 (325)
98 KOG4302|consensus 42.0 2.8E+02 0.006 25.4 16.7 94 2-103 101-197 (660)
99 PF10792 DUF2605: Protein of u 41.0 1.1E+02 0.0024 20.5 8.7 54 37-90 12-65 (98)
100 PF11616 EZH2_WD-Binding: WD r 40.9 48 0.001 17.0 2.6 20 107-126 7-26 (30)
101 PF06013 WXG100: Proteins of 1 39.5 89 0.0019 19.0 13.2 79 63-144 4-82 (86)
102 KOG3478|consensus 39.5 1.3E+02 0.0027 20.8 11.3 70 67-136 30-99 (120)
103 PF07889 DUF1664: Protein of u 39.4 1.3E+02 0.0029 21.1 8.3 66 7-78 46-111 (126)
104 PF10392 COG5: Golgi transport 38.8 1.4E+02 0.0029 20.9 12.4 64 38-103 32-95 (132)
105 PF03962 Mnd1: Mnd1 family; I 38.6 1.7E+02 0.0037 22.0 14.1 96 64-159 60-167 (188)
106 PF05667 DUF812: Protein of un 37.4 3.1E+02 0.0068 24.7 20.4 32 109-140 404-435 (594)
107 PF00957 Synaptobrevin: Synapt 37.4 1.1E+02 0.0024 19.5 8.0 28 112-139 9-36 (89)
108 PRK07737 fliD flagellar cappin 36.6 2.9E+02 0.0062 24.3 8.5 52 109-160 444-495 (501)
109 PRK06798 fliD flagellar cappin 35.8 2.9E+02 0.0062 23.8 8.5 53 108-160 381-433 (440)
110 PF05377 FlaC_arch: Flagella a 35.4 99 0.0022 18.4 5.5 22 78-99 26-47 (55)
111 KOG0860|consensus 35.2 1.5E+02 0.0033 20.5 6.7 11 74-84 30-40 (116)
112 KOG0161|consensus 35.0 5.5E+02 0.012 26.9 22.0 27 73-99 992-1018(1930)
113 PF15070 GOLGA2L5: Putative go 34.9 3.5E+02 0.0076 24.5 20.4 74 61-134 148-223 (617)
114 PF06320 GCN5L1: GCN5-like pro 34.8 1.6E+02 0.0034 20.5 13.4 80 88-171 23-108 (121)
115 KOG0161|consensus 34.4 5.7E+02 0.012 26.8 20.9 53 108-160 1092-1144(1930)
116 COG1340 Uncharacterized archae 34.2 2.6E+02 0.0056 22.8 23.1 31 5-35 56-86 (294)
117 PF03915 AIP3: Actin interacti 34.0 3.1E+02 0.0067 23.6 17.5 64 36-100 217-280 (424)
118 PF03962 Mnd1: Mnd1 family; I 33.5 2.1E+02 0.0045 21.5 10.9 30 66-95 103-132 (188)
119 PF04728 LPP: Lipoprotein leuc 33.3 1.1E+02 0.0024 18.3 5.3 16 107-122 39-54 (56)
120 PF13166 AAA_13: AAA domain 32.7 3.8E+02 0.0082 24.3 22.6 56 74-129 371-426 (712)
121 PF03993 DUF349: Domain of Unk 32.7 1.2E+02 0.0026 18.5 6.3 44 80-126 27-70 (77)
122 TIGR00996 Mtu_fam_mce virulenc 32.5 2.5E+02 0.0055 22.2 14.8 88 69-157 191-278 (291)
123 PHA02562 46 endonuclease subun 31.6 3.5E+02 0.0077 23.6 20.9 16 75-90 308-323 (562)
124 PRK01156 chromosome segregatio 31.2 4.5E+02 0.0098 24.7 19.6 8 151-158 739-746 (895)
125 PF10234 Cluap1: Clusterin-ass 30.1 2.9E+02 0.0063 22.2 11.1 58 109-166 179-236 (267)
126 PF01540 Lipoprotein_7: Adhesi 29.6 3E+02 0.0065 22.2 16.8 148 13-166 113-266 (353)
127 COG4477 EzrA Negative regulato 29.4 4.1E+02 0.0089 23.7 14.7 62 31-92 346-408 (570)
128 PF13514 AAA_27: AAA domain 29.4 5.4E+02 0.012 25.0 22.5 67 37-103 696-773 (1111)
129 PRK10803 tol-pal system protei 28.9 2.9E+02 0.0064 21.8 6.9 44 2-45 59-102 (263)
130 KOG0933|consensus 28.7 5.5E+02 0.012 24.9 20.6 67 110-176 410-476 (1174)
131 KOG3564|consensus 27.6 4.3E+02 0.0093 23.3 9.6 70 26-95 36-106 (604)
132 PF07106 TBPIP: Tat binding pr 27.3 2.5E+02 0.0053 20.4 9.5 54 37-94 84-137 (169)
133 PF09403 FadA: Adhesion protei 26.9 2.3E+02 0.005 19.9 15.0 91 2-92 25-119 (126)
134 PF05600 DUF773: Protein of un 26.7 4.5E+02 0.0097 23.2 14.9 85 61-149 122-213 (507)
135 PF11401 Tetrabrachion: Tetrab 25.7 1.3E+02 0.0028 16.6 4.3 32 110-141 8-40 (49)
136 PF04156 IncA: IncA protein; 25.6 2.8E+02 0.006 20.4 15.6 21 36-56 92-112 (191)
137 PF04582 Reo_sigmaC: Reovirus 25.1 2.2E+02 0.0048 23.5 5.5 26 146-171 131-156 (326)
138 PF07851 TMPIT: TMPIT-like pro 25.0 4E+02 0.0087 22.1 11.5 10 157-166 77-86 (330)
139 PF07304 SRA1: Steroid recepto 25.0 2.7E+02 0.006 20.2 7.7 36 2-38 70-107 (157)
140 PF12761 End3: Actin cytoskele 24.7 3.2E+02 0.0069 20.8 9.7 22 2-23 101-122 (195)
141 PF13747 DUF4164: Domain of un 24.5 2.1E+02 0.0046 18.7 11.4 70 71-142 13-82 (89)
142 PF11887 DUF3407: Protein of u 24.2 3.7E+02 0.008 21.3 14.1 95 8-102 14-109 (267)
143 PF07412 Geminin: Geminin; In 24.1 2.6E+02 0.0057 21.4 5.4 31 19-49 112-142 (200)
144 cd07623 BAR_SNX1_2 The Bin/Amp 23.9 3.4E+02 0.0073 20.8 14.7 42 109-152 159-200 (224)
145 PF13675 PilJ: Type IV pili me 23.6 2.2E+02 0.0048 18.6 5.5 50 76-131 46-95 (112)
146 PF02646 RmuC: RmuC family; I 23.3 4E+02 0.0088 21.5 10.0 49 106-154 233-281 (304)
147 KOG4603|consensus 23.3 3.2E+02 0.007 20.4 11.6 90 36-140 90-179 (201)
148 PF06419 COG6: Conserved oligo 23.3 5.6E+02 0.012 23.1 14.9 135 2-136 43-182 (618)
149 PLN02943 aminoacyl-tRNA ligase 23.2 5.3E+02 0.012 24.7 8.4 59 35-93 892-951 (958)
150 TIGR03185 DNA_S_dndD DNA sulfu 23.0 5.7E+02 0.012 23.1 19.5 84 8-100 206-289 (650)
151 COG3418 Flagellar biosynthesis 22.7 3E+02 0.0065 19.8 8.4 28 113-140 75-103 (146)
152 PF12644 DUF3782: Protein of u 22.6 1.8E+02 0.0039 17.2 5.6 40 80-126 8-47 (64)
153 PF07851 TMPIT: TMPIT-like pro 22.6 4.5E+02 0.0098 21.8 12.9 59 2-60 2-60 (330)
154 PF06825 HSBP1: Heat shock fac 22.5 1.8E+02 0.0039 17.2 5.5 18 111-128 8-25 (54)
155 PF05596 Taeniidae_ag: Taeniid 22.2 1.8E+02 0.004 17.8 3.5 23 1-23 27-49 (64)
156 KOG4673|consensus 22.2 6.4E+02 0.014 23.4 15.4 61 74-134 606-672 (961)
157 PF10046 BLOC1_2: Biogenesis o 22.2 2.4E+02 0.0053 18.6 12.5 55 108-166 44-98 (99)
158 PRK06664 fliD flagellar hook-a 22.1 6.2E+02 0.013 23.2 12.5 54 107-160 601-654 (661)
159 KOG4302|consensus 21.6 6.4E+02 0.014 23.2 18.2 140 4-143 18-190 (660)
160 PF04582 Reo_sigmaC: Reovirus 21.6 2.6E+02 0.0057 23.1 5.3 70 21-99 34-103 (326)
161 COG5220 TFB3 Cdk activating ki 21.4 3.3E+02 0.0072 21.6 5.5 64 17-81 79-142 (314)
162 PF13874 Nup54: Nucleoporin co 21.2 3.1E+02 0.0067 19.4 8.2 95 66-165 30-124 (141)
163 TIGR00996 Mtu_fam_mce virulenc 21.0 4.2E+02 0.0092 20.9 12.4 75 63-142 164-238 (291)
164 PF13942 Lipoprotein_20: YfhG 20.8 3.7E+02 0.008 20.1 9.8 59 108-167 107-166 (179)
165 PRK08476 F0F1 ATP synthase sub 20.7 3.2E+02 0.0068 19.3 11.3 43 12-57 28-70 (141)
166 PRK06008 flgL flagellar hook-a 20.5 4.6E+02 0.01 21.6 6.7 40 132-171 51-90 (348)
167 PTZ00419 valyl-tRNA synthetase 20.5 7.1E+02 0.015 24.0 8.7 59 35-93 932-991 (995)
168 PF15450 DUF4631: Domain of un 20.3 6.1E+02 0.013 22.5 20.8 26 7-32 225-250 (531)
169 TIGR01834 PHA_synth_III_E poly 20.2 5E+02 0.011 21.4 16.4 27 5-31 180-206 (320)
170 PRK10722 hypothetical protein; 20.0 4.5E+02 0.0097 20.8 7.3 58 111-168 156-213 (247)
No 1
>KOG0517|consensus
Probab=99.80 E-value=9e-18 Score=153.48 Aligned_cols=162 Identities=16% Similarity=0.301 Sum_probs=152.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHH
Q psy3215 1 MILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHA 80 (186)
Q Consensus 1 ~i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ 80 (186)
.|+.+++.|..+|..|+..+..|+..|+++...|+ |..++++.+.||.+.|..+++. ..|.|+.++-..+.+||+|+.
T Consensus 600 vi~~R~~~le~~y~eL~~laa~RRarLE~sr~l~~-F~~d~~EeEaWlkEkeqi~~sa-~~g~DLs~v~~ll~kHKalE~ 677 (2473)
T KOG0517|consen 600 VIQERVAHLEQCYQELVELAAARRARLEESRRLWQ-FLWDVEEEEAWLKEKEQILSSA-DTGRDLSSVLRLLQKHKALED 677 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcc-cccccHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999999999999998 9999999999999999988766 488999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy3215 81 DLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEA 160 (186)
Q Consensus 81 ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~ 160 (186)
||..|.+.+..+...|..|+..+++ .+..|..++..+..+|+.|...+..|+++|+++. .++||+.+.++..+||.++
T Consensus 678 E~~~~~a~~~~~~~~G~~Lvae~~p-g~~~i~~R~~~i~~~W~~L~~l~~~r~~rL~~A~-~~~QffaDAdd~~sWl~d~ 755 (2473)
T KOG0517|consen 678 EMRGRDAHLKQMIREGEELVAEGHP-GSDQIQERAAEIREQWQRLEALVAGRGRRLQEAR-ELYQFFADADDAESWLRDA 755 (2473)
T ss_pred HHhcchhHHHHHHHHHHHHHhcCCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999998865 5668999999999999999999999999999996 5789999999999999998
Q ss_pred HhHhhh
Q psy3215 161 ESTMEC 166 (186)
Q Consensus 161 e~~L~~ 166 (186)
-..+++
T Consensus 756 ~rlvss 761 (2473)
T KOG0517|consen 756 LRLVSS 761 (2473)
T ss_pred HHhccc
Confidence 887766
No 2
>KOG0517|consensus
Probab=99.77 E-value=3.9e-17 Score=149.38 Aligned_cols=162 Identities=19% Similarity=0.339 Sum_probs=150.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q psy3215 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHAD 81 (186)
Q Consensus 2 i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~e 81 (186)
|+.|+..++.+|+.|...+..|+.+|+++....+ |+.+.+++..||.++-..+++. ++|.|-.+.+..+++|+.+..|
T Consensus 707 i~~R~~~i~~~W~~L~~l~~~r~~rL~~A~~~~Q-ffaDAdd~~sWl~d~~rlvss~-d~G~DE~saq~LlkrH~~l~~E 784 (2473)
T KOG0517|consen 707 IQERAAEIREQWQRLEALVAGRGRRLQEARELYQ-FFADADDAESWLRDALRLVSSE-DVGHDEASAQALLKRHRDLEEE 784 (2473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhccch-hcCCchHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999998876 9999999999999999877654 6999999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcccCchhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy3215 82 LHQFKQQIVLFNQLTQKLISVYQHDDTTRVKK---ITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLS 158 (186)
Q Consensus 82 i~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~---~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~ 158 (186)
|.++.+.|..|.+.|..|....+ +.+.|+. ++..++..|..|...+.-|+..|++++. +..|++.++.+..||.
T Consensus 785 l~a~~~~i~~L~eQa~~l~~~~~--e~p~V~~~~~R~~~i~q~Y~El~~lA~lRrq~L~dala-Ly~~~se~d~~ElWi~ 861 (2473)
T KOG0517|consen 785 LRAYRGDIDRLEEQASALPQESP--EGPEVRQPLQRQDTISQDYEELQELAQLRRQRLEDALA-LYGFYSECDACELWIK 861 (2473)
T ss_pred HHHhhhHHHHHHHHHHhhccccC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHH
Confidence 99999999999999999998865 3456666 9999999999999999999999999997 5779999999999999
Q ss_pred HHHhHhhhhH
Q psy3215 159 EAESTMECVE 168 (186)
Q Consensus 159 e~e~~L~~~~ 168 (186)
+++..|.++.
T Consensus 862 Eke~~L~~m~ 871 (2473)
T KOG0517|consen 862 EKEKWLATMS 871 (2473)
T ss_pred HHHHHHhccC
Confidence 9999999864
No 3
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.76 E-value=1.1e-16 Score=121.42 Aligned_cols=134 Identities=22% Similarity=0.403 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHH
Q psy3215 34 SQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKK 113 (186)
Q Consensus 34 ~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~ 113 (186)
++.|.+++.++..||.++|..|....+++ |+..++..+++|+.|..+|..+.+.+..++..|+.|...++ ..+..|..
T Consensus 2 ~~~f~~~~~~l~~Wl~~~e~~l~~~~~~~-d~~~~~~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~-~~~~~i~~ 79 (213)
T cd00176 2 LQQFLRDADELEAWLSEKEELLSSTDYGD-DLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGH-PDAEEIQE 79 (213)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCcccCC-CHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCC-CChHHHHH
Confidence 46799999999999999999999887665 99999999999999999999999999999999999999886 57899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhhhHHH
Q psy3215 114 ITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEVE 170 (186)
Q Consensus 114 ~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e~~L~~~~~~ 170 (186)
.++.|+.+|..|+..+..|...|+.++..++.|..... +..||.+++..|......
T Consensus 80 ~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~~-l~~wl~~~e~~l~~~~~~ 135 (213)
T cd00176 80 RLEELNQRWEELRELAEERRQRLEEALDLQQFFRDADD-LEQWLEEKEAALASEDLG 135 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcccC
Confidence 99999999999999999999999999987766665555 999999999999876543
No 4
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=99.74 E-value=4.8e-16 Score=117.83 Aligned_cols=136 Identities=20% Similarity=0.384 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q psy3215 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHAD 81 (186)
Q Consensus 2 i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~e 81 (186)
|...++.|+.+|+.|+..+..|...|+.++..++.|+... ++..||.+++..+...+|.+ +++.++.++..|+.|..+
T Consensus 77 i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~~~-~l~~wl~~~e~~l~~~~~~~-~~~~~~~~l~~~~~~~~~ 154 (213)
T cd00176 77 IQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRDAD-DLEQWLEEKEAALASEDLGK-DLESVEELLKKHKELEEE 154 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCcccCC-CHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999988776544 49999999999999876554 899999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 82 LHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSA 139 (186)
Q Consensus 82 i~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~ 139 (186)
|..+++.+..+...|..|...+++.....|..++..+..+|..|++.+..|...|+.+
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~L~~~ 212 (213)
T cd00176 155 LEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQKKLEEA 212 (213)
T ss_pred HHhchHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999998766668999999999999999999999999999864
No 5
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=99.68 E-value=3.5e-15 Score=101.09 Aligned_cols=104 Identities=22% Similarity=0.421 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHH
Q psy3215 33 DSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVK 112 (186)
Q Consensus 33 ~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~ 112 (186)
.++.|...++++..||.+++..|...+ ++.+++.+..++++|+.|..+|..+.+.+..++..|..|...+ +.++..|+
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~-~~~~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~-~~~~~~i~ 79 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSE-PGSDLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSG-PEDSDEIQ 79 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCT-HSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHHH
Confidence 457899999999999999999996555 4899999999999999999999999999999999999996666 46889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 113 KITEQVNQRYNNLNTSIINRGKALNS 138 (186)
Q Consensus 113 ~~l~~l~~rw~~L~~~~~~r~~~Le~ 138 (186)
.++..|+.+|..|+..+..|...|++
T Consensus 80 ~~~~~l~~~w~~l~~~~~~r~~~Lee 105 (105)
T PF00435_consen 80 EKLEELNQRWEALCELVEERRQKLEE 105 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999974
No 6
>smart00150 SPEC Spectrin repeats.
Probab=99.66 E-value=5.2e-15 Score=99.74 Aligned_cols=100 Identities=20% Similarity=0.432 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHH
Q psy3215 36 RYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKIT 115 (186)
Q Consensus 36 ~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l 115 (186)
.|..++.++..||.+++..+.. .++|.|++.++.++++|+.|+.+|..+++.+..+...|..|...++ .++..|..++
T Consensus 2 ~f~~~~~~l~~Wl~~~e~~l~~-~~~~~d~~~~~~~~~~~~~~~~e~~~~~~~v~~~~~~~~~L~~~~~-~~~~~i~~~~ 79 (101)
T smart00150 2 QFLRDADELEAWLSEKEALLAS-EDLGKDLESVEALLKKHEALEAELEAHEERVEALNELGEQLIEEGH-PDAEEIEERL 79 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-CcHHHHHHHH
Confidence 4999999999999999988775 4577899999999999999999999999999999999999999875 4778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy3215 116 EQVNQRYNNLNTSIINRGKALN 137 (186)
Q Consensus 116 ~~l~~rw~~L~~~~~~r~~~Le 137 (186)
..|+.+|..|+..+..|...|+
T Consensus 80 ~~l~~~w~~l~~~~~~r~~~L~ 101 (101)
T smart00150 80 EELNERWEELKELAEERRQKLE 101 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999998874
No 7
>KOG0040|consensus
Probab=99.63 E-value=2.1e-14 Score=130.01 Aligned_cols=161 Identities=20% Similarity=0.371 Sum_probs=151.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q psy3215 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHAD 81 (186)
Q Consensus 2 i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~e 81 (186)
|+.+|..|+..|+-|.....+++-+|..++...+ |...++++..|+.+.|.-+.+.. .|.|.+.++...+++..|+.+
T Consensus 120 ~~~~l~el~~lw~~l~~~~~ekg~kl~~al~~~q-~~~~c~~i~~wi~dke~~~t~~e-~g~d~e~~evl~~kf~~f~~~ 197 (2399)
T KOG0040|consen 120 IKARLEELHHLWDLLLEKLLEKGIKLLQALKLVQ-YLRECEDILEWIGDKEAIVTSEE-LGQDLEHVEVLQKKFEDFQKE 197 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHhccchheeeHHH-hcccHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999998866 99999999999999998776654 789999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy3215 82 LHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAE 161 (186)
Q Consensus 82 i~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e 161 (186)
+.+|+..|..++..|..|...++| +...|..+.+.+|..|..|.+.+..|+..|-++. ..++|.+++++-..||.+++
T Consensus 198 ~~~~e~rv~evnq~a~~~~~e~h~-e~~~i~~k~~evn~aw~rl~~la~~rq~~l~~a~-~~qrf~rd~~et~~wi~ek~ 275 (2399)
T KOG0040|consen 198 LAAHEYRVNEVNQYADKLVEEGHP-ELDLIQKKQDEVNAAWQRLKGLALQRQEKLFGAA-EVQRFNRDVDETIAWIKEKE 275 (2399)
T ss_pred HHhhhHhHHHHHHHHHHHHHcCCC-chHHHHHhHHHHHHHHHHHHHHHHHHHHhhccHH-HHHHhcccHHHHHHHHhhcc
Confidence 999999999999999999999866 6789999999999999999999999999999996 68999999999999999998
Q ss_pred hHhhh
Q psy3215 162 STMEC 166 (186)
Q Consensus 162 ~~L~~ 166 (186)
-.|++
T Consensus 276 ~~l~s 280 (2399)
T KOG0040|consen 276 PVLSS 280 (2399)
T ss_pred ccccc
Confidence 88865
No 8
>KOG0040|consensus
Probab=99.58 E-value=1.9e-13 Score=124.04 Aligned_cols=168 Identities=17% Similarity=0.334 Sum_probs=154.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHH
Q psy3215 1 MILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHA 80 (186)
Q Consensus 1 ~i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ 80 (186)
.|..+-+++|..|..|.+.+-.|+..|-.+-.. +.|..++++...|+.+.+..|++. ++|.|+.+++....+|+-++.
T Consensus 225 ~i~~k~~evn~aw~rl~~la~~rq~~l~~a~~~-qrf~rd~~et~~wi~ek~~~l~sd-dygrdl~~~q~l~~~h~g~er 302 (2399)
T KOG0040|consen 225 LIQKKQDEVNAAWQRLKGLALQRQEKLFGAAEV-QRFNRDVDETIAWIKEKEPVLSSD-DYGRDLASVQALQRKHEGLER 302 (2399)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhccHHHH-HHhcccHHHHHHHHhhcccccccc-ccchhHHHHHHHHHhccchhh
Confidence 378889999999999999999999999999976 569999999999999999988765 599999999999999999999
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy3215 81 DLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEA 160 (186)
Q Consensus 81 ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~ 160 (186)
++...+..|..|...|+.|....| .++..|+.+-.++...|++|...+..|...|+.... ++.|..++++|..|+.++
T Consensus 303 dla~l~~kv~~l~~~a~~l~~~hp-~~a~qi~~~~~~~~~~w~~~~~~a~~r~~~l~~s~~-~hrf~ad~rdL~~w~~~~ 380 (2399)
T KOG0040|consen 303 DLAALEDKVKELCAEAEKLTLSHP-DDAPQIQEKKEDLVSSWEHIRTLATERKEKLQASYW-LHRFLADFRDLSSWINEM 380 (2399)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHhhhHHHHHHHHHHH
Confidence 999999999999999999998874 689999999999999999999999999999999985 799999999999999998
Q ss_pred HhHhhhhHHHhh
Q psy3215 161 ESTMECVEVETD 172 (186)
Q Consensus 161 e~~L~~~~~~~~ 172 (186)
-..++.-+.+++
T Consensus 381 ~aaInadel~~d 392 (2399)
T KOG0040|consen 381 KAAINADELAKD 392 (2399)
T ss_pred HHHcCchhhHHH
Confidence 887776554443
No 9
>KOG4286|consensus
Probab=99.51 E-value=4.9e-12 Score=108.91 Aligned_cols=161 Identities=17% Similarity=0.275 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHH
Q psy3215 8 KLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQ 87 (186)
Q Consensus 8 ~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~ 87 (186)
.++.+|+.|...+.+-+.+|+++...|.+++..+.++..||......+....|+|+|...++.+-.-|+.|+.||....+
T Consensus 75 ~mn~~w~~l~kks~~ir~~lea~~~~w~kl~~~l~el~~wl~~kd~el~~q~p~ggd~~avq~q~~~~~a~~re~k~k~~ 154 (966)
T KOG4286|consen 75 LMNFKWSELRKKSLNIRSHLEASSDQWKRLHLSLQELLVWLQLKDDELSRQAPIGGDFPAVQKQNDVHRAFKRELKTKEP 154 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHhcCCCCCChHHHHHHHHHHHHHHHHHhhccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccC-------------------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 88 QIVLFNQLTQKLISVYQHD-------------------DTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDK 148 (186)
Q Consensus 88 ~~~~l~~~~~~L~~~~~~~-------------------~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~ 148 (186)
.+.+..+.|+.++...+-+ -+..++.+-+.++..|+.|...+..+.+..+.++..++.+++
T Consensus 155 ~~~s~~e~a~~fl~~~p~e~~e~~~~~~e~~p~~r~q~~~r~~~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~ 234 (966)
T KOG4286|consen 155 VIMSTLETARIFLTEQPLEGLEKYQEPRELPPEERAQNVTRLLRKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQE 234 (966)
T ss_pred HHHHHHHHHHHHHhcCCCcchhhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHH
Confidence 9999999999987665321 124566667889999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHhHhhhhH
Q psy3215 149 SIDNFLAWLSEAESTMECVE 168 (186)
Q Consensus 149 ~~~~l~~Wl~e~e~~L~~~~ 168 (186)
.++++..-|..+|....+..
T Consensus 235 a~~el~~~l~~ae~~~~~w~ 254 (966)
T KOG4286|consen 235 ATDELDLKLRQAEVIKGSWQ 254 (966)
T ss_pred HHHHHHHhhhHHHhhhhccc
Confidence 99999999999998877643
No 10
>KOG4286|consensus
Probab=99.15 E-value=2.4e-09 Score=92.69 Aligned_cols=149 Identities=21% Similarity=0.311 Sum_probs=132.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CHHHHHHHHHHHHHHHHH
Q psy3215 3 LHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGY-TADVLEVQLREQKSIHAD 81 (186)
Q Consensus 3 ~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~-d~~~l~~~l~~~k~l~~e 81 (186)
+.+-..++..|++|+..+.++.++++.++...+.++..++++..-|.++|.......|+|. -.+.++..+++.+.|..+
T Consensus 198 ~kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~e 277 (966)
T KOG4286|consen 198 RKQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGE 277 (966)
T ss_pred HHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhh
Confidence 4556788999999999999999999999999999999999999999999999999989874 679999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 82 LHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLA 155 (186)
Q Consensus 82 i~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~ 155 (186)
|......|..+++.|.+|....-. -.......++.+|.||..|...+..|..+|.++.. .|.....+|.+
T Consensus 278 i~p~~~~v~~vndla~ql~~~d~~-ls~~~~~~le~~n~rwk~Lq~SV~~rl~qlrna~~---dfgp~sqhfls 347 (966)
T KOG4286|consen 278 IAPLKENVSHVNDLARQLTTLDIQ-LSPYNLSTLEDLNTRWKLLQVSVPDRLTQLRNAHR---DFGPISQHFLS 347 (966)
T ss_pred cchHhhchhhHHHHHHHhhhcccC-CChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCcHHHHHhh
Confidence 999999999999999999876532 34567889999999999999999999999999964 47666666543
No 11
>KOG4240|consensus
Probab=95.99 E-value=0.67 Score=43.17 Aligned_cols=138 Identities=12% Similarity=0.131 Sum_probs=99.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q psy3215 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHAD 81 (186)
Q Consensus 2 i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~e 81 (186)
|+.-+..+..+=..+......+..++..+... ..+..+.+++..|+.+-...|....-.+.+..........|..|..-
T Consensus 246 vQ~~le~l~~~~q~~El~~d~~s~rl~~a~~l-~~l~~~k~qv~~~~rng~smLt~~~~~~s~~~et~~Lq~~~~~f~d~ 324 (1025)
T KOG4240|consen 246 VQGLLESLEEEVQRLELPADVRSTRLEQASQL-AKLLEDKNQVLALIRNGLSMLTQLRVLASDLSETSQLQREHRQFQDA 324 (1025)
T ss_pred HHHHHHhHHHHHHhhcchhhchhhHHHHHHHH-HHHHHHHHHHHHHHhcchhhhhhhccCCCcCCccHHHHhhHhhhhhH
Confidence 34445555555566666667788888888866 55999999999999999998887765555665666666777777776
Q ss_pred HHh--hHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 82 LHQ--FKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSS 142 (186)
Q Consensus 82 i~~--~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~ 142 (186)
++. +...+.........+... ..+...+..++..++.+|..|...+..|.+.+..+...
T Consensus 325 ~e~k~~~~q~~~~~~a~~~~~~~--h~~~~e~~~~le~~~t~~qql~~~~e~r~~~vaa~~~~ 385 (1025)
T KOG4240|consen 325 QEVKTLLSQLQVQQKAFDLLQNK--HQNRDESLEKLETLQTKWQQLMTAMEDRLKLVAAAVAF 385 (1025)
T ss_pred HHHHHHHHHHHHHHHHHHHHhch--hhhHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 655 333333333333333222 33678899999999999999999999999999888653
No 12
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=93.06 E-value=9.1 Score=37.10 Aligned_cols=133 Identities=11% Similarity=0.219 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhh
Q psy3215 7 TKLREHWDETNNKVMARKTQLDSMLSD-SQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQF 85 (186)
Q Consensus 7 ~~l~~~W~~L~~~~~~r~~~L~~~l~~-~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~ 85 (186)
...+..|..+..........+...+.. -..|...+.++..|.. ..|++.+.-+..+..++..+.....--..|..+
T Consensus 717 ~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~---~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~ 793 (1201)
T PF12128_consen 717 NELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYN---QELAGKGVDPERIQQLKQEIEQLEKELKRIEER 793 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456678888888888887777777763 4467788888888885 467665532233444566666666666666666
Q ss_pred HHHHHHHHHHHHHHHhh-------ccc--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 86 KQQIVLFNQLTQKLISV-------YQH--DDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSS 142 (186)
Q Consensus 86 ~~~~~~l~~~~~~L~~~-------~~~--~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~ 142 (186)
++.|..-..--...... .|. .....+..++..+..+...+......+...++.....
T Consensus 794 r~~V~eY~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~le~~~~~ 859 (1201)
T PF12128_consen 794 RAEVIEYEDWLQEEWDKVDELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKELEEELKA 859 (1201)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77665554443333322 111 1234455555555555555555555555555555443
No 13
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=92.84 E-value=4 Score=32.35 Aligned_cols=147 Identities=12% Similarity=0.222 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CCCCHHHHHHHHHHHHHHHHHHH
Q psy3215 6 ITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNP--VGYTADVLEVQLREQKSIHADLH 83 (186)
Q Consensus 6 l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~--~~~d~~~l~~~l~~~k~l~~ei~ 83 (186)
+..|..+=......+.......+..+...+.....+..+..=+.++-..+..... .+.+...+...+.+.+.+..+|.
T Consensus 61 ~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr 140 (264)
T PF06008_consen 61 VENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMR 140 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555566666666666666666654443 23466778999999999999997
Q ss_pred hhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhH
Q psy3215 84 QFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAEST 163 (186)
Q Consensus 84 ~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e~~ 163 (186)
.+. +......|..=.. .-..-++.|...|.............+.+. +.+|...+.++..||.++...
T Consensus 141 ~r~--f~~~~~~Ae~El~--------~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~---L~~~~~kL~Dl~~~l~eA~~~ 207 (264)
T PF06008_consen 141 KRD--FTPQRQNAEDELK--------EAEDLLSRVQKWFQKPQQENESLAEAIRDD---LNDYNAKLQDLRDLLNEAQNK 207 (264)
T ss_pred hcc--chhHHHHHHHHHH--------HHHHHHHHHHHHHhhHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 773 5444444433221 111222222223333333333322223222 334666666666666665544
Q ss_pred hh
Q psy3215 164 ME 165 (186)
Q Consensus 164 L~ 165 (186)
..
T Consensus 208 ~~ 209 (264)
T PF06008_consen 208 TR 209 (264)
T ss_pred HH
Confidence 43
No 14
>KOG0994|consensus
Probab=91.84 E-value=12 Score=35.81 Aligned_cols=27 Identities=11% Similarity=0.133 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 109 TRVKKITEQVNQRYNNLNTSIINRGKA 135 (186)
Q Consensus 109 ~~i~~~l~~l~~rw~~L~~~~~~r~~~ 135 (186)
...+..++.+.+.++.+...+..|...
T Consensus 1657 ~~a~q~~~~lq~~~~~~~~l~~~r~~g 1683 (1758)
T KOG0994|consen 1657 LSAEQGLEILQKYYELVDRLLEKRMEG 1683 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555555666555555544433
No 15
>PRK04863 mukB cell division protein MukB; Provisional
Probab=89.74 E-value=23 Score=35.26 Aligned_cols=31 Identities=13% Similarity=0.131 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHhhhhHHHh
Q psy3215 141 SSLQNFDKSIDNFLAWLSEAESTMECVEVET 171 (186)
Q Consensus 141 ~~~~~f~~~~~~l~~Wl~e~e~~L~~~~~~~ 171 (186)
....+|...+..+...+.+.+..++.+....
T Consensus 442 ~~LenF~aklee~e~qL~elE~kL~~lea~l 472 (1486)
T PRK04863 442 DWLEEFQAKEQEATEELLSLEQKLSVAQAAH 472 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345677777777777777777776655443
No 16
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=89.69 E-value=0.45 Score=31.05 Aligned_cols=28 Identities=36% Similarity=0.703 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHhHhhhhHH
Q psy3215 142 SLQNFDKSIDNFLAWLSEAESTMECVEV 169 (186)
Q Consensus 142 ~~~~f~~~~~~l~~Wl~e~e~~L~~~~~ 169 (186)
.+++|...++++..||.+++..|.....
T Consensus 2 ~~~~f~~~~~~l~~Wl~~~e~~l~~~~~ 29 (105)
T PF00435_consen 2 QLQQFQQEADELLDWLQETEAKLSSSEP 29 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCSCTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999955443
No 17
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=89.33 E-value=12 Score=31.46 Aligned_cols=82 Identities=9% Similarity=0.204 Sum_probs=58.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy3215 81 DLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEA 160 (186)
Q Consensus 81 ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~ 160 (186)
.++...+.+=.+.+.-..|...+ .++......+..+...-..+...+..+...|...-. .|...+..+..|+...
T Consensus 306 ~~~~~~~~lP~lv~RL~tL~~lH--~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~---~~~~N~~~i~~n~~~l 380 (388)
T PF04912_consen 306 RWDPYAPSLPSLVERLKTLKSLH--EEAAEFSQTLSELESQQSDLQSQLKKWEELLNKVEE---KFKENMETIEKNVKKL 380 (388)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 33444444444444444444443 356677788888888888888888888888887743 4999999999999999
Q ss_pred HhHhhhh
Q psy3215 161 ESTMECV 167 (186)
Q Consensus 161 e~~L~~~ 167 (186)
+.++..+
T Consensus 381 e~Ri~~L 387 (388)
T PF04912_consen 381 EERIAKL 387 (388)
T ss_pred HHHHhcc
Confidence 9998765
No 18
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=87.80 E-value=19 Score=31.86 Aligned_cols=40 Identities=10% Similarity=0.124 Sum_probs=23.0
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy3215 53 NRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLF 92 (186)
Q Consensus 53 ~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l 92 (186)
..+....|-++..+.+....++......-....+.-+..|
T Consensus 195 ~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L 234 (557)
T COG0497 195 EELEELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELL 234 (557)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3455666666777777776666555555444444444444
No 19
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=82.61 E-value=38 Score=30.87 Aligned_cols=125 Identities=12% Similarity=0.149 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC---CCCHHHHHHHHHHHHHH
Q psy3215 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV---GYTADVLEVQLREQKSI 78 (186)
Q Consensus 2 i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~---~~d~~~l~~~l~~~k~l 78 (186)
+..+-..|..+|..|...+..-++.|-+.-=..- |.....++..=++.+|..+...... +.....-...-++.+.+
T Consensus 240 L~~r~~~L~~k~~~L~~e~~~LK~ELiedRW~~v-Fr~l~~q~~~m~esver~~~kl~~~~~~~~~~~~~~~l~~~i~s~ 318 (683)
T PF08580_consen 240 LEDRYERLEKKWKKLEKEAESLKKELIEDRWNIV-FRNLGRQAQKMCESVERSLSKLQEAIDSGIHLDNPSKLSKQIESK 318 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy3215 79 HADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITE-QVNQRYNNLNTSIINRGKAL 136 (186)
Q Consensus 79 ~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~-~l~~rw~~L~~~~~~r~~~L 136 (186)
..-+..+-+.+..-...+ |+..+ |.+++. +|..||..|+.....-...+
T Consensus 319 ~~k~~~~~~~I~ka~~~s--Ii~~g-------v~~r~n~~L~~rW~~L~~~~d~~L~~~ 368 (683)
T PF08580_consen 319 EKKKSHYFPAIYKARVLS--IIDKG-------VADRLNADLAQRWLELKEDMDSLLEDS 368 (683)
T ss_pred HHHHhccHHHHHHHHHHH--hhhhh-------HHHHhhHHHHHHHHHHHHHHHHhhhhc
No 20
>PRK11637 AmiB activator; Provisional
Probab=81.80 E-value=31 Score=29.31 Aligned_cols=54 Identities=11% Similarity=0.220 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3215 3 LHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQ 56 (186)
Q Consensus 3 ~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~ 56 (186)
++++..+...-+.+......-..++.............+..+..=|..++..+.
T Consensus 46 ~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~ 99 (428)
T PRK11637 46 RDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLN 99 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443444444333333344444444444444444333
No 21
>PRK04863 mukB cell division protein MukB; Provisional
Probab=81.55 E-value=61 Score=32.45 Aligned_cols=128 Identities=13% Similarity=0.088 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-------cCchhHHHH
Q psy3215 41 RQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQ-------HDDTTRVKK 113 (186)
Q Consensus 41 ~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~-------~~~~~~i~~ 113 (186)
+.+...=|..+|..+.....-+.+.+.++.+....+.-.+.+...---+..|.+....|.-... .+-...|+.
T Consensus 913 ~~~~~~~L~qLE~~l~~L~~Dp~~~e~lr~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~l~~~~~~~~~Le~ 992 (1486)
T PRK04863 913 VQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQ 992 (1486)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhHhhcchhhhHHHHH
Confidence 4556666677777776654222333334444444444444444444444444444444431110 123467888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhhhH
Q psy3215 114 ITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVE 168 (186)
Q Consensus 114 ~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e~~L~~~~ 168 (186)
++..+...+..+.....+-...+...-..+..+...+.....=+.+.+..|..+.
T Consensus 993 ~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g 1047 (1486)
T PRK04863 993 RLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLG 1047 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 8888888888888888888888888877777788888888888888888887754
No 22
>KOG0035|consensus
Probab=81.50 E-value=1.4 Score=40.70 Aligned_cols=132 Identities=14% Similarity=0.226 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHH
Q psy3215 35 QRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKI 114 (186)
Q Consensus 35 ~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~ 114 (186)
..|-.....-..|.-..|..+....+...-+..+++..+.|..+...+..|...+..+...++.|...-. .++..+...
T Consensus 397 ~~f~~~~s~~~~~~pg~e~~l~~~d~~~~lle~~ke~~~~~ea~~~~~~~~~~~~e~~~ai~~~~~~~~~-~~~~~~a~~ 475 (890)
T KOG0035|consen 397 SKFSQKASLHESWTPGKEQVLFLNDYGQALLEECKELTKKHEAFESDLSAHQDNVEAFCAIAHELNELLY-DDAKLVAAD 475 (890)
T ss_pred hhccccCchhhhhccchhhhhhhcchHHHHHHHHHhhcccccccccchhhhhcchhHHHHHHHHhhhhhh-hhhhhhhhh
Confidence 4577778888899988888888766444566789999999999999999999999999999999987764 356777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHhHhhhh
Q psy3215 115 TEQVNQRYNNLNTSIINRGKALNSA-------MSSLQNFDKSIDNFLAWLSEAESTMECV 167 (186)
Q Consensus 115 l~~l~~rw~~L~~~~~~r~~~Le~~-------~~~~~~f~~~~~~l~~Wl~e~e~~L~~~ 167 (186)
+..+++.|..+......|...|... ......|......+..||..+-..+...
T Consensus 476 ~q~i~dq~~~~~~ls~~r~pal~~~~~~~dk~~~~~le~a~Raa~~~~~l~~~~~d~~d~ 535 (890)
T KOG0035|consen 476 CQHICDQWDDLGQLSRKRRPALMQMEKVLDKLAVLTLEFAKRAAPFNNWLKGVQEDLQDN 535 (890)
T ss_pred hhhccccccccchhhhhhchhhhhhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhcccc
Confidence 8888889988777766555554433 3334567777788899998866655543
No 23
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=80.99 E-value=52 Score=31.33 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 5 KITKLREHWDETNNKVMARKTQLD 28 (186)
Q Consensus 5 ~l~~l~~~W~~L~~~~~~r~~~L~ 28 (186)
.+..+......+......-...+.
T Consensus 685 ~~~~l~~~l~~~~~~~~~~~~~l~ 708 (1179)
T TIGR02168 685 KIEELEEKIAELEKALAELRKELE 708 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444433333333
No 24
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=80.27 E-value=20 Score=26.14 Aligned_cols=59 Identities=15% Similarity=0.369 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHhHHHHHhHhhhh
Q psy3215 108 TTRVKKITEQVNQRYNN--LNTSIINRGKALNSAMSSLQNFDKS-----------IDNFLAWLSEAESTMECV 167 (186)
Q Consensus 108 ~~~i~~~l~~l~~rw~~--L~~~~~~r~~~Le~~~~~~~~f~~~-----------~~~l~~Wl~e~e~~L~~~ 167 (186)
..++..|++-|-+.|+. |...+..+...|-.++. ..+|... .++...||..+.+.+...
T Consensus 67 ~~D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~-~~d~~~A~~Ih~~L~t~h~~E~~~WmvGVKRLI~~~ 138 (157)
T PF07304_consen 67 VDDIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQ-ARDYDAADEIHVDLMTDHVDECGNWMVGVKRLIAMA 138 (157)
T ss_dssp HHHHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHH-HT-HHHHHHHHHHHHHSSHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhccHHHhhhHHHHHHHHHHHH
Confidence 46899999999999985 88888888888888875 4667765 478888999988877664
No 25
>PRK02224 chromosome segregation protein; Provisional
Probab=79.87 E-value=52 Score=30.65 Aligned_cols=39 Identities=13% Similarity=0.337 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 6 ITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEV 44 (186)
Q Consensus 6 l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l 44 (186)
+..+..+.+.+......+...++........+...+.++
T Consensus 511 l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~~l 549 (880)
T PRK02224 511 IERLEERREDLEELIAERRETIEEKRERAEELRERAAEL 549 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444434444444443
No 26
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=79.44 E-value=27 Score=27.15 Aligned_cols=25 Identities=12% Similarity=0.244 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Q psy3215 74 EQKSIHADLHQFKQQIVLFNQLTQK 98 (186)
Q Consensus 74 ~~k~l~~ei~~~~~~~~~l~~~~~~ 98 (186)
++..++.+|......+.++......
T Consensus 142 ki~eLE~el~~~~~~lk~lE~~~~~ 166 (237)
T PF00261_consen 142 KIKELEEELKSVGNNLKSLEASEEK 166 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3444555555555555444444433
No 27
>KOG0995|consensus
Probab=79.30 E-value=45 Score=29.53 Aligned_cols=52 Identities=15% Similarity=0.312 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3215 6 ITKLREHWDETNNKVMARK---TQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQR 57 (186)
Q Consensus 6 l~~l~~~W~~L~~~~~~r~---~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~ 57 (186)
+..+...=.+|..+..+|. .+.+..-..+...++|++.+...+.+.+.....
T Consensus 237 ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~ 291 (581)
T KOG0995|consen 237 IEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQH 291 (581)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH
Confidence 3444444444444444443 234444445566777888888777777765543
No 28
>KOG0972|consensus
Probab=79.04 E-value=33 Score=27.83 Aligned_cols=73 Identities=14% Similarity=0.360 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 75 QKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDN 152 (186)
Q Consensus 75 ~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~ 152 (186)
|+.+-..++....+=.+|+..-..|++.. ......++.+..+|+....-+..|.+.|.+......+.-+.+++
T Consensus 254 h~eit~~LEkI~SREK~lNnqL~~l~q~f-----r~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe 326 (384)
T KOG0972|consen 254 HKEITKALEKIASREKSLNNQLASLMQKF-----RRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEE 326 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555566666555555443 24566677777888888888888888888777766655555443
No 29
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=78.81 E-value=19 Score=25.06 Aligned_cols=83 Identities=11% Similarity=0.263 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc------------ccCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 64 TADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVY------------QHDDTTRVKKITEQVNQRYNNLNTSIIN 131 (186)
Q Consensus 64 d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~------------~~~~~~~i~~~l~~l~~rw~~L~~~~~~ 131 (186)
+...+...-...+.++.|+...+..+..+...-..+...- .......++..+..++.||.++....++
T Consensus 14 ~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 14 SVQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444444555567777777766666654333322211 0123467888888899999999888888
Q ss_pred HHHHHHHHHHHHHHH
Q psy3215 132 RGKALNSAMSSLQNF 146 (186)
Q Consensus 132 r~~~Le~~~~~~~~f 146 (186)
+....++.-....+.
T Consensus 94 K~E~veEL~~Dv~Dl 108 (120)
T PF12325_consen 94 KSEEVEELRADVQDL 108 (120)
T ss_pred hHHHHHHHHHHHHHH
Confidence 887777665544433
No 30
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=78.04 E-value=30 Score=26.90 Aligned_cols=51 Identities=14% Similarity=0.337 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3215 6 ITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQ 56 (186)
Q Consensus 6 l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~ 56 (186)
+..+...-+.....+..-...|..+......+...+..+..=|..+|..|.
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le 53 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELE 53 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444455555555555554444
No 31
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.44 E-value=31 Score=26.99 Aligned_cols=86 Identities=12% Similarity=0.223 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy3215 6 ITKLREHWDETNN-KVMARKTQLDSMLS-DSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLH 83 (186)
Q Consensus 6 l~~l~~~W~~L~~-~~~~r~~~L~~~l~-~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~ 83 (186)
+...+.-|+.+.. .....+.+|++-|. .-..++..-+.+..|+..-+-+ ...+....-..|+....+++.++.+..
T Consensus 21 ~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQR~RdQIK~W~~~~diK--dk~~L~e~Rk~IE~~MErFK~vEkesK 98 (233)
T PF04065_consen 21 VEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQRLRDQIKTWLSSNDIK--DKKKLLENRKLIEEQMERFKVVEKESK 98 (233)
T ss_pred HHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHccCcccc--cHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455666666666 33556667776664 2445666668888888654433 111111122346777788888888776
Q ss_pred hhHHHHHHHH
Q psy3215 84 QFKQQIVLFN 93 (186)
Q Consensus 84 ~~~~~~~~l~ 93 (186)
.....-++|.
T Consensus 99 tKafSkeGL~ 108 (233)
T PF04065_consen 99 TKAFSKEGLM 108 (233)
T ss_pred ccccchhhhh
Confidence 6555555544
No 32
>KOG0994|consensus
Probab=75.19 E-value=85 Score=30.62 Aligned_cols=16 Identities=0% Similarity=0.183 Sum_probs=7.2
Q ss_pred HHHHHHHhHHHHHhHh
Q psy3215 149 SIDNFLAWLSEAESTM 164 (186)
Q Consensus 149 ~~~~l~~Wl~e~e~~L 164 (186)
.++.+++..+.++..+
T Consensus 1662 ~~~~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1662 GLEILQKYYELVDRLL 1677 (1758)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444444
No 33
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=74.36 E-value=24 Score=23.92 Aligned_cols=73 Identities=15% Similarity=0.255 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 67 VLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSA 139 (186)
Q Consensus 67 ~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~ 139 (186)
.+..++.+|+....+|....+.-.-..-.|.-|......+-...+.++++.+..+-..+......-..++.+.
T Consensus 28 ~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 28 QVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666677777777766665555666666665544322234555555555444444444444444333333
No 34
>PRK02224 chromosome segregation protein; Provisional
Probab=73.52 E-value=79 Score=29.48 Aligned_cols=19 Identities=5% Similarity=0.192 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy3215 109 TRVKKITEQVNQRYNNLNT 127 (186)
Q Consensus 109 ~~i~~~l~~l~~rw~~L~~ 127 (186)
..+...+..+......+..
T Consensus 649 e~l~~~~~~~~~~~~~l~~ 667 (880)
T PRK02224 649 EEAREDKERAEEYLEQVEE 667 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 35
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=73.32 E-value=62 Score=28.14 Aligned_cols=134 Identities=12% Similarity=0.222 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHH
Q psy3215 6 ITKLREHWDETNNKV---MARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADL 82 (186)
Q Consensus 6 l~~l~~~W~~L~~~~---~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei 82 (186)
++.+...=++|..+. ..-....+..-..|....++...+...+..++++....+ +-...++.. ....+++|
T Consensus 273 i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~---g~l~kl~~e---ie~kEeei 346 (622)
T COG5185 273 IANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWP---GKLEKLKSE---IELKEEEI 346 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc---hHHHHHHHH---HHHHHHHH
Confidence 344444444444443 233344455556777888888999999999888876542 322233322 33345555
Q ss_pred HhhHHHHHHHHHHHHH-------HHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 83 HQFKQQIVLFNQLTQK-------LISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFD 147 (186)
Q Consensus 83 ~~~~~~~~~l~~~~~~-------L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~ 147 (186)
.+.+.+.+.|...... +-... .+...+-..++-++..-+.|...+..+....++.+..+....
T Consensus 347 ~~L~~~~d~L~~q~~kq~Is~e~fe~mn--~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~ 416 (622)
T COG5185 347 KALQSNIDELHKQLRKQGISTEQFELMN--QEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTL 416 (622)
T ss_pred HHHHhhHHHHHHHHHhcCCCHHHHHHHH--HHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5555555555433221 11111 134566777777888888888888877766666655544333
No 36
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=73.29 E-value=26 Score=23.75 Aligned_cols=62 Identities=15% Similarity=0.291 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy3215 37 YDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISV 102 (186)
Q Consensus 37 f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~ 102 (186)
..+.+.....=|+.+|..+.+.| ...|...++-.+.+ +..++....+.+..++...+-|++.
T Consensus 40 l~~~~~~~~~Rl~~lE~~l~~LP-t~~dv~~L~l~l~e---l~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 40 LEERLDEHDRRLQALETKLEHLP-TRDDVHDLQLELAE---LRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667888899999998874 44566666655444 8888888888888888888877754
No 37
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=73.27 E-value=28 Score=24.22 Aligned_cols=38 Identities=13% Similarity=0.236 Sum_probs=17.1
Q ss_pred HHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHH
Q psy3215 93 NQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSII 130 (186)
Q Consensus 93 ~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~ 130 (186)
...|.-|...+.+.-...+.++.+.+..|-..|...-.
T Consensus 57 k~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~ 94 (119)
T COG1382 57 KKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEE 94 (119)
T ss_pred HHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444443322334455555555555554444333
No 38
>KOG0996|consensus
Probab=72.97 E-value=95 Score=30.15 Aligned_cols=58 Identities=9% Similarity=0.197 Sum_probs=25.1
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 78 IHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKAL 136 (186)
Q Consensus 78 l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~L 136 (186)
.+.+|..........+..+....... ...+..|++....+...|..+...+..-...+
T Consensus 445 ~~~ei~~L~~~~~~~~~~l~e~~~~l-~~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~ 502 (1293)
T KOG0996|consen 445 CQTEIEQLEELLEKEERELDEILDSL-KQETEGIREEIEKLEKELMPLLKQVNEARSEL 502 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444333322 12334455555555555544444444433333
No 39
>KOG0996|consensus
Probab=72.87 E-value=96 Score=30.13 Aligned_cols=128 Identities=9% Similarity=0.206 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC----CCCCCHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHHHhhccc
Q psy3215 36 RYDAKRQEVDGWLTRMENRMQRMN----PVGYTADVLEVQLREQKSIHADLHQFK------QQIVLFNQLTQKLISVYQH 105 (186)
Q Consensus 36 ~f~~~~~~l~~WL~~~E~~l~~~~----~~~~d~~~l~~~l~~~k~l~~ei~~~~------~~~~~l~~~~~~L~~~~~~ 105 (186)
.+..++..+..-+...+..+.... +...|...+...-.....+..+++..+ ..+..+...-..+..
T Consensus 824 ~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~---- 899 (1293)
T KOG0996|consen 824 KLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGG---- 899 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhc----
Confidence 344455555544444444444332 122344444444444444555554441 333333333333321
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhhh
Q psy3215 106 DDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECV 167 (186)
Q Consensus 106 ~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e~~L~~~ 167 (186)
.....-++++..++.+-..+...+..-.-.+..+-.....|+..+.++..=+..++..+..+
T Consensus 900 e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L 961 (1293)
T KOG0996|consen 900 EKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDL 961 (1293)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445667777777777777766666666666666666777777777777777777766554
No 40
>PRK03918 chromosome segregation protein; Provisional
Probab=72.20 E-value=84 Score=29.23 Aligned_cols=18 Identities=11% Similarity=0.291 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHhhcc
Q psy3215 41 RQEVDGWLTRMENRMQRM 58 (186)
Q Consensus 41 ~~~l~~WL~~~E~~l~~~ 58 (186)
+.++..=+.+.+..+...
T Consensus 565 ~~~~~~~~~~~~~~l~~L 582 (880)
T PRK03918 565 LDELEEELAELLKELEEL 582 (880)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 333334444444444433
No 41
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=72.11 E-value=58 Score=27.35 Aligned_cols=128 Identities=14% Similarity=0.220 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCC------CCCH----HHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHhhccc-
Q psy3215 38 DAKRQEVDGWLTRMENRMQRMNPV------GYTA----DVLEVQLREQKSI-HADLHQFKQQIVLFNQLTQKLISVYQH- 105 (186)
Q Consensus 38 ~~~~~~l~~WL~~~E~~l~~~~~~------~~d~----~~l~~~l~~~k~l-~~ei~~~~~~~~~l~~~~~~L~~~~~~- 105 (186)
...+.+|+.-|...|..|...++. +..+ ..+...-.+...| ...++.....+..|......|......
T Consensus 208 la~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~~ 287 (388)
T PF04912_consen 208 LARAADLEKRLARLESALGIDSDKMSSLDSDTSSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKEA 287 (388)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccccccccCCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 467888999999999988873220 1111 2233333333333 235666677777776666666543221
Q ss_pred ----CchhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhh
Q psy3215 106 ----DDTTRVKKITEQVNQRYNNLNTS---IINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMEC 166 (186)
Q Consensus 106 ----~~~~~i~~~l~~l~~rw~~L~~~---~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e~~L~~ 166 (186)
.....|. .+=.+-.+|+.++.. +-.|.+.|......+.+|...+..+..=+.++...+..
T Consensus 288 ~~~~~~e~KI~-eLy~~l~~~~~~~~~lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~ 354 (388)
T PF04912_consen 288 KEDAEQESKID-ELYEILPRWDPYAPSLPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKK 354 (388)
T ss_pred cccccchhHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123443 233456688887776 45677888888877778888777766666665555544
No 42
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=72.03 E-value=27 Score=23.42 Aligned_cols=87 Identities=11% Similarity=0.194 Sum_probs=63.1
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 52 ENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIIN 131 (186)
Q Consensus 52 E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~ 131 (186)
...+......+.+++.+...-.+.+.+..+++..+.....+...-..+...+ .+...+...+..+...-..+...+..
T Consensus 15 ~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~--~~~~~l~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 15 RENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG--EDAEELKAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT--CCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555434567888999999999999999999988888877666665554 36777888888877777777776666
Q ss_pred HHHHHHHHH
Q psy3215 132 RGKALNSAM 140 (186)
Q Consensus 132 r~~~Le~~~ 140 (186)
-...+...+
T Consensus 93 ~e~~l~~~l 101 (108)
T PF02403_consen 93 LEEELNELL 101 (108)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555543
No 43
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=70.48 E-value=51 Score=26.01 Aligned_cols=166 Identities=8% Similarity=0.145 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CCCHHHHHHHHHHHHHHHHHHHh
Q psy3215 6 ITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV-GYTADVLEVQLREQKSIHADLHQ 84 (186)
Q Consensus 6 l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~-~~d~~~l~~~l~~~k~l~~ei~~ 84 (186)
+..+....+.+...+......+.........+...+..+..=+.....+......- +.-......-+.+.+.+...|..
T Consensus 19 ~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~ 98 (264)
T PF06008_consen 19 PYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQN 98 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544444444444444444444444444443332211 12334567778888888888888
Q ss_pred hHHHHHHHHHHHHHHHhhcccCch-------hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--------HH
Q psy3215 85 FKQQIVLFNQLTQKLISVYQHDDT-------TRVKKITEQVNQR-YNNLNTSIINRGKALNSAMSSLQNF--------DK 148 (186)
Q Consensus 85 ~~~~~~~l~~~~~~L~~~~~~~~~-------~~i~~~l~~l~~r-w~~L~~~~~~r~~~Le~~~~~~~~f--------~~ 148 (186)
....+..+...+..+......... ..++..+..|..| +......+..-...-+..+...+.+ ..
T Consensus 99 l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~ 178 (264)
T PF06008_consen 99 LQDNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKRDFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENES 178 (264)
T ss_pred HHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHH
Confidence 888888888887777662211222 3444455555444 1111222222222222222122221 11
Q ss_pred HHHHHHHhHHHHHhHhhhhHHHh
Q psy3215 149 SIDNFLAWLSEAESTMECVEVET 171 (186)
Q Consensus 149 ~~~~l~~Wl~e~e~~L~~~~~~~ 171 (186)
-...+..+|.+....|..+.+.+
T Consensus 179 l~~~i~~~L~~~~~kL~Dl~~~l 201 (264)
T PF06008_consen 179 LAEAIRDDLNDYNAKLQDLRDLL 201 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 12566777777777776665444
No 44
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=69.16 E-value=83 Score=27.93 Aligned_cols=121 Identities=15% Similarity=0.264 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q psy3215 3 LHKITKLREHWDETN-NKVMARKTQLDSMLSDSQRY-----DAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQK 76 (186)
Q Consensus 3 ~~~l~~l~~~W~~L~-~~~~~r~~~L~~~l~~~~~f-----~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k 76 (186)
.......+..|+.+. ....+-...|.++-.....| ...+.++..=|+.+|..+... .+.+...+...+
T Consensus 59 ~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i------~~~l~~L~~~e~ 132 (560)
T PF06160_consen 59 EEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEI------LDELDELLESEE 132 (560)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 345677888898888 66777777776665543333 344555555555555554432 233444444444
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHH
Q psy3215 77 SIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSII 130 (186)
Q Consensus 77 ~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~ 130 (186)
.=..+|......+..+......-....+ .....|..+++.+...+........
T Consensus 133 ~nr~~i~~l~~~y~~lrk~ll~~~~~~G-~a~~~Le~~L~~ie~~F~~f~~lt~ 185 (560)
T PF06160_consen 133 KNREEIEELKEKYRELRKELLAHSFSYG-PAIEELEKQLENIEEEFSEFEELTE 185 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhc-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555444443322222221 2356777777777777777665544
No 45
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=69.08 E-value=95 Score=28.58 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q psy3215 75 QKSIHADLHQFKQQIVLFNQ 94 (186)
Q Consensus 75 ~k~l~~ei~~~~~~~~~l~~ 94 (186)
.+.+...+...+..++.++.
T Consensus 641 L~~~~~~l~~l~~si~~lk~ 660 (717)
T PF10168_consen 641 LERMKDQLQDLKASIEQLKK 660 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 46
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=67.53 E-value=53 Score=25.00 Aligned_cols=107 Identities=16% Similarity=0.253 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 66 DVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQN 145 (186)
Q Consensus 66 ~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~ 145 (186)
+++.....+...++..+..+.....++...-..+.... ..-..++-.-..+..|+..|...-.+-..+++.++...++
T Consensus 62 epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~e--k~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQ 139 (201)
T PF13851_consen 62 EPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELE--KELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQ 139 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666555555444443332 1334455555666666666666666666666666555443
Q ss_pred --------HHHHHHHHHHhHHHHHhHhhhhHHHhhhh
Q psy3215 146 --------FDKSIDNFLAWLSEAESTMECVEVETDRQ 174 (186)
Q Consensus 146 --------f~~~~~~l~~Wl~e~e~~L~~~~~~~~~~ 174 (186)
+..-+..+..=+...+..|..+-.+.+..
T Consensus 140 k~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~~nld 176 (201)
T PF13851_consen 140 KTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAAANLD 176 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 33446667777777777777665554433
No 47
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=67.36 E-value=35 Score=22.87 Aligned_cols=61 Identities=20% Similarity=0.324 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHH
Q psy3215 67 VLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNT 127 (186)
Q Consensus 67 ~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~ 127 (186)
.+..++.+|+....+|....+.-.-....|.-|.......-...+..++..+..+-..+..
T Consensus 24 ~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~ 84 (105)
T cd00632 24 KVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLER 84 (105)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666665444444445555555443222223344444444444333333
No 48
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=66.60 E-value=88 Score=27.25 Aligned_cols=90 Identities=18% Similarity=0.323 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-----------CCCCHHHHHHH
Q psy3215 3 LHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNP-----------VGYTADVLEVQ 71 (186)
Q Consensus 3 ~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~-----------~~~d~~~l~~~ 71 (186)
-+.+..+..+|..|..-..--.....+.-.+.+.+-..+..+..=+...|+.+..... -+.+++.++..
T Consensus 294 s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~m 373 (622)
T COG5185 294 SQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELM 373 (622)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHH
Confidence 4566778888888887777666666666667777777777777777777766654321 12244444444
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q psy3215 72 LREQKSIHADLHQFKQQIVLF 92 (186)
Q Consensus 72 l~~~k~l~~ei~~~~~~~~~l 92 (186)
-.+-..|-.+++...++.+.|
T Consensus 374 n~Ere~L~reL~~i~~~~~~L 394 (622)
T COG5185 374 NQEREKLTRELDKINIQSDKL 394 (622)
T ss_pred HHHHHHHHHHHHHhcchHHHH
Confidence 444555555555555555444
No 49
>KOG0977|consensus
Probab=65.31 E-value=1e+02 Score=27.41 Aligned_cols=57 Identities=16% Similarity=0.379 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy3215 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRM 58 (186)
Q Consensus 2 i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~ 58 (186)
++..+..+..+|.+....+..-...+...+.........+.-+..|...+|..+...
T Consensus 118 l~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 118 LREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 456788888899888777777677777666666668888999999999999877754
No 50
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=65.30 E-value=48 Score=23.75 Aligned_cols=99 Identities=8% Similarity=0.167 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 68 LEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFD 147 (186)
Q Consensus 68 l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~ 147 (186)
|...-.+...++.+|......+..+......-..... ....+..++..|...-......+..-..+|..+-..+..|-
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~--~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~e 114 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKS--NAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFE 114 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--hHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4445555666777777777776666655544332221 23356666777777766667777777777777766666676
Q ss_pred HHHHHHHHhHHHHHhHhhhhH
Q psy3215 148 KSIDNFLAWLSEAESTMECVE 168 (186)
Q Consensus 148 ~~~~~l~~Wl~e~e~~L~~~~ 168 (186)
+.+..|..=...-+..+..+.
T Consensus 115 Rkv~~le~~~~~~E~k~eel~ 135 (143)
T PF12718_consen 115 RKVKALEQERDQWEEKYEELE 135 (143)
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 666666665555555555543
No 51
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=64.38 E-value=85 Score=26.27 Aligned_cols=137 Identities=11% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy3215 10 REHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQI 89 (186)
Q Consensus 10 ~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~ 89 (186)
+.+++........-...+..+-....+++.++....+=|..-|..+.+. ++..+++++..+.++...+..+
T Consensus 219 R~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~q---------le~l~~eYr~~~~~ls~~~~~y 289 (359)
T PF10498_consen 219 RSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQ---------LEPLIQEYRSAQDELSEVQEKY 289 (359)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhhhH
Q psy3215 90 VLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVE 168 (186)
Q Consensus 90 ~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e~~L~~~~ 168 (186)
...+... ......+..|+...+.+.....+|+..+-++ ..+.+--.++..|..=|.+++-++-.++
T Consensus 290 ~~~s~~V------------~~~t~~L~~IseeLe~vK~emeerg~~mtD~-sPlv~IKqAl~kLk~EI~qMdvrIGVle 355 (359)
T PF10498_consen 290 KQASEGV------------SERTRELAEISEELEQVKQEMEERGSSMTDG-SPLVKIKQALTKLKQEIKQMDVRIGVLE 355 (359)
T ss_pred HHHhhHH------------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHHHHHHHHHHHhhhhhheeh
No 52
>PRK09343 prefoldin subunit beta; Provisional
Probab=64.08 E-value=46 Score=23.09 Aligned_cols=73 Identities=15% Similarity=0.238 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 67 VLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSA 139 (186)
Q Consensus 67 ~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~ 139 (186)
.+..++.+.+....|+....+.-.-....|.-|......+-...+..+++.+..+-..|......-..++.+.
T Consensus 32 ~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~ 104 (121)
T PRK09343 32 QIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKEL 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666555555555666665543322334555555555544444444444433333333
No 53
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=64.05 E-value=74 Score=25.45 Aligned_cols=111 Identities=12% Similarity=0.207 Sum_probs=60.4
Q ss_pred HHHHHHHhhcc--CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHH
Q psy3215 48 LTRMENRMQRM--NPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNL 125 (186)
Q Consensus 48 L~~~E~~l~~~--~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L 125 (186)
|..+..+|+.. ++.+.+-..+.-.+-+.+.+..|+...+...- .++...+.---...++.+..+..-.+-+
T Consensus 32 me~~q~kL~l~~~e~l~~s~~ql~ll~~~~k~L~aE~~qwqk~~p-------eii~~n~~VL~~lgkeelqkl~~eLe~v 104 (268)
T PF11802_consen 32 MEECQNKLSLIGTETLTDSDAQLSLLMMRVKCLTAELEQWQKRTP-------EIIPLNPEVLLTLGKEELQKLISELEMV 104 (268)
T ss_pred HHHHHHHHhhcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCC-------CcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555544 23333334455666677778888776654432 2222221111133455555566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhh
Q psy3215 126 NTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTME 165 (186)
Q Consensus 126 ~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e~~L~ 165 (186)
...+..+..+|...+..-+++......+..=|......|.
T Consensus 105 Ls~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk 144 (268)
T PF11802_consen 105 LSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELK 144 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777777776666666666555555555544443
No 54
>PRK10869 recombination and repair protein; Provisional
Probab=62.70 E-value=1.1e+02 Score=27.10 Aligned_cols=54 Identities=9% Similarity=0.103 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy3215 40 KRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFN 93 (186)
Q Consensus 40 ~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~ 93 (186)
...+-.++|...-..+....|.++..+.+....+++...+.-.+.....+..|.
T Consensus 182 ~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~~~~~~~L~ 235 (553)
T PRK10869 182 ERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTSQNALQLLA 235 (553)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344445555555566777777778888898888888888777776666666553
No 55
>KOG0250|consensus
Probab=61.99 E-value=1.5e+02 Score=28.46 Aligned_cols=106 Identities=14% Similarity=0.122 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 63 YTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQH--DDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAM 140 (186)
Q Consensus 63 ~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~--~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~ 140 (186)
.+...++......+....+|+.+...+..+......+.....+ ..-...+.++....++.+.+...+..|..++..+-
T Consensus 731 ~~~~~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e 810 (1074)
T KOG0250|consen 731 VDISKLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAE 810 (1074)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhh
Confidence 4666788888888889999999998888888877776554432 23467788888899999999999999999998865
Q ss_pred HHHHHHHHHHHHHHHhHHHHHhHhhhhH
Q psy3215 141 SSLQNFDKSIDNFLAWLSEAESTMECVE 168 (186)
Q Consensus 141 ~~~~~f~~~~~~l~~Wl~e~e~~L~~~~ 168 (186)
..--.+...+.+...=+..+|..+...+
T Consensus 811 ~~~~HyE~~~K~~l~~l~~~E~~~~~~e 838 (1074)
T KOG0250|consen 811 DEKRHYEDKLKSRLEELKQKEVEKVNLE 838 (1074)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHhhh
Confidence 5433344444444445556666655543
No 56
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=61.97 E-value=34 Score=20.88 Aligned_cols=58 Identities=14% Similarity=0.331 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCC-CHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy3215 35 QRYDAKRQEVDGWLTRMENRMQRMNPVGY-TADVLEVQLREQKSIHADLHQFKQQIVLF 92 (186)
Q Consensus 35 ~~f~~~~~~l~~WL~~~E~~l~~~~~~~~-d~~~l~~~l~~~k~l~~ei~~~~~~~~~l 92 (186)
.++...+..+..=+..++..|++...+.. .++.+...-.++..+..++......+..|
T Consensus 7 ~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVve~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 7 ERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVVEKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35677778888888888889988765543 33557777788888888888777776654
No 57
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=61.28 E-value=55 Score=23.04 Aligned_cols=61 Identities=7% Similarity=0.189 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhhhH
Q psy3215 108 TTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVE 168 (186)
Q Consensus 108 ~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e~~L~~~~ 168 (186)
...+..+++.|..+-+........-.....+......++..+++.+..=+...+..+..++
T Consensus 63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777776666666666766666677777777777777777776666554
No 58
>PRK09039 hypothetical protein; Validated
Probab=59.00 E-value=1e+02 Score=25.51 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 68 LEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSS 142 (186)
Q Consensus 68 l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~ 142 (186)
+...-.++......+....|.|..|+.....|-.. -..|...++....+-......+..-...|+.++..
T Consensus 118 ~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q-----la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 118 AGELAQELDSEKQVSARALAQVELLNQQIAALRRQ-----LAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556666777777788888888877777654 34577778888888877777777777888877644
No 59
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=58.69 E-value=85 Score=24.41 Aligned_cols=29 Identities=14% Similarity=0.256 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 111 VKKITEQVNQRYNNLNTSIINRGKALNSA 139 (186)
Q Consensus 111 i~~~l~~l~~rw~~L~~~~~~r~~~Le~~ 139 (186)
|-.-+..+.+-+..+...+..|.++|-+.
T Consensus 96 vl~Pl~~~~s~f~~I~~~I~KR~~Kl~DY 124 (225)
T cd07590 96 FIEPLKRLRSVFPSVNAAIKRREQSLQEY 124 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44444555555555555555555555433
No 60
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=57.83 E-value=1e+02 Score=25.18 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHH
Q psy3215 21 MARKTQLDSMLSD-----SQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQF-KQQIVLFNQ 94 (186)
Q Consensus 21 ~~r~~~L~~~l~~-----~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~-~~~~~~l~~ 94 (186)
.+++.++...+.. ...+..+...+..++..+...+... ..-...+...+...+....++... ...+..+.
T Consensus 140 YeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l---~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr- 215 (325)
T PF08317_consen 140 YEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKL---RERKAELEEELENLKQLVEEIESCDQEELEALR- 215 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHH-
Confidence 4555555544432 1223444444444444443332211 123345666666666666665544 22333332
Q ss_pred HHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 95 LTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSA 139 (186)
Q Consensus 95 ~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~ 139 (186)
..|..... .-...+..+..++..-..+...+.+...+....
T Consensus 216 --~eL~~~~~--~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 216 --QELAEQKE--EIEAKKKELAELQEELEELEEKIEELEEQKQEL 256 (325)
T ss_pred --HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332221 223344444444444444444444443333333
No 61
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=57.36 E-value=2.1e+02 Score=28.41 Aligned_cols=18 Identities=6% Similarity=0.180 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3215 36 RYDAKRQEVDGWLTRMEN 53 (186)
Q Consensus 36 ~f~~~~~~l~~WL~~~E~ 53 (186)
.+...++++..=+.....
T Consensus 885 ~le~~L~el~~el~~l~~ 902 (1311)
T TIGR00606 885 QFEEQLVELSTEVQSLIR 902 (1311)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 62
>PRK10722 hypothetical protein; Provisional
Probab=57.28 E-value=94 Score=24.49 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy3215 6 ITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGY 63 (186)
Q Consensus 6 l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~ 63 (186)
|.+=+.||..|...+.....+|.+.....+.=.+....=.+=|+++|..|++.++.++
T Consensus 160 LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqLSsRk~~~~ 217 (247)
T PRK10722 160 LAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQLSSRKQAGN 217 (247)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 4556778888877777666666666655554455555666778999999988876543
No 63
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=56.80 E-value=1.6e+02 Score=27.10 Aligned_cols=155 Identities=12% Similarity=0.157 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h------hccCC-C--------CCC
Q psy3215 3 LHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENR---M------QRMNP-V--------GYT 64 (186)
Q Consensus 3 ~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~---l------~~~~~-~--------~~d 64 (186)
+++|..+..-=..|...+.+-+.+|+.+-.....|+..+..|..=|..+-.. . ..... . ..|
T Consensus 271 ~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~D 350 (717)
T PF09730_consen 271 KQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYEVD 350 (717)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhhhc
Confidence 4566666666677888888999999888887777877777666554443331 0 00000 0 012
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHH---------------------HHHHHHHHHHHH
Q psy3215 65 ADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRV---------------------KKITEQVNQRYN 123 (186)
Q Consensus 65 ~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i---------------------~~~l~~l~~rw~ 123 (186)
..+++..-.+++....++...++.+..+...-..+-... ......+ ++++..|.....
T Consensus 351 i~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~-~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr 429 (717)
T PF09730_consen 351 INGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERY-KQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELR 429 (717)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 223444455666666666666666666655444333322 1122222 334455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy3215 124 NLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLS 158 (186)
Q Consensus 124 ~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~ 158 (186)
.+...+.+....|..+...+..|...+..|-.-+.
T Consensus 430 ~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC 464 (717)
T PF09730_consen 430 ALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVC 464 (717)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666666555555555555544443
No 64
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=54.91 E-value=1.5e+02 Score=26.26 Aligned_cols=46 Identities=13% Similarity=0.376 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 5 KITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMEN 53 (186)
Q Consensus 5 ~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~ 53 (186)
.+..+..+|..+...+-+.......+... +...+..+.......+.
T Consensus 137 ~i~~l~~~y~~lrk~ll~~~~~~G~a~~~---Le~~L~~ie~~F~~f~~ 182 (560)
T PF06160_consen 137 EIEELKEKYRELRKELLAHSFSYGPAIEE---LEKQLENIEEEFSEFEE 182 (560)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhHHH---HHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444444433 23344444444444443
No 65
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=54.79 E-value=1.9e+02 Score=27.30 Aligned_cols=92 Identities=13% Similarity=0.210 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC----CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHH
Q psy3215 37 YDAKRQEVDGWLTRMENRMQRMNP----VGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVK 112 (186)
Q Consensus 37 f~~~~~~l~~WL~~~E~~l~~~~~----~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~ 112 (186)
..........+|.+....+..... .......+...+..++.+...+......+..+......+..... .....+.
T Consensus 282 ~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~~~~~ 360 (908)
T COG0419 282 LLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN-ELAKLLE 360 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 444455555555555544332210 11234445666666666666666666666666555555533321 1233344
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy3215 113 KITEQVNQRYNNLNTSI 129 (186)
Q Consensus 113 ~~l~~l~~rw~~L~~~~ 129 (186)
.+...+..++..+...+
T Consensus 361 ~~~~~l~~~~~~l~~~~ 377 (908)
T COG0419 361 ERLKELEERLEELEKEL 377 (908)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444433443333
No 66
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=54.76 E-value=1e+02 Score=24.11 Aligned_cols=31 Identities=13% Similarity=0.286 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 5 KITKLREHWDETNNKVMARKTQLDSMLSDSQ 35 (186)
Q Consensus 5 ~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~ 35 (186)
.+.....+|......+..+..++.+......
T Consensus 25 ~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~ 55 (251)
T PF11932_consen 25 QAQQVQQQWVQAAQQSQKRIDQWDDEKQELL 55 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888887777777665433
No 67
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=54.19 E-value=1.1e+02 Score=24.35 Aligned_cols=60 Identities=20% Similarity=0.328 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 86 KQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDK 148 (186)
Q Consensus 86 ~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~ 148 (186)
.-.++.|...+..|+...|- ..+++++..+..+|..|.+.++....++.+.-.++.....
T Consensus 156 d~dvevLL~~ae~L~~vYP~---~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~ 215 (259)
T PF08657_consen 156 DVDVEVLLRGAEKLCNVYPL---PGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNR 215 (259)
T ss_pred cCCHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567888889999988853 3799999999999999999999888888777666655543
No 68
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=53.93 E-value=2.2e+02 Score=27.78 Aligned_cols=45 Identities=7% Similarity=0.285 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 111 VKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLA 155 (186)
Q Consensus 111 i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~ 155 (186)
+......+...+..+..........+...-.....+......+..
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~ 418 (1163)
T COG1196 374 LEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSE 418 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555554444444444444443333333333333
No 69
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=53.80 E-value=90 Score=23.24 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Q psy3215 5 KITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGY 63 (186)
Q Consensus 5 ~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~ 63 (186)
.|.+-+.||.+|...+......|.+.....+.=......=.+=|+++|..|++..+.++
T Consensus 113 ~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKLEnLTDIERQLSSRK~~~~ 171 (179)
T PF13942_consen 113 QLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKLENLTDIERQLSSRKQAQS 171 (179)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhccCCCCC
Confidence 45667888999988888777777666655442333444445568899999999887654
No 70
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=52.70 E-value=60 Score=20.86 Aligned_cols=60 Identities=12% Similarity=0.223 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy3215 34 SQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLT 96 (186)
Q Consensus 34 ~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~ 96 (186)
.+.|...+..+..=|..+...+...+.+..+ +..+....+.++..|......+..+.+.+
T Consensus 23 ~kd~~~~~~~lk~Klq~ar~~i~~lpgi~~s---~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 23 SKDLDTATGSLKHKLQKARAAIRELPGIDRS---VEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5678888899999999999999888766665 45556666678888888888887776654
No 71
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=52.44 E-value=1e+02 Score=23.44 Aligned_cols=92 Identities=8% Similarity=0.161 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHH
Q psy3215 37 YDAKRQEVDGWLTRMENRMQRM-NPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKIT 115 (186)
Q Consensus 37 f~~~~~~l~~WL~~~E~~l~~~-~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l 115 (186)
+..++.+|+.=|..++...... .+....+.-|+.++..+=.+ .+.++..+.. .......+...|++-+
T Consensus 101 LkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~Y------K~~ql~~~~~-----~~~~~~~~l~~v~~Dl 169 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDY------KERQLRELEE-----GRSKSGKNLKSVREDL 169 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHH------HHHHHHhhhc-----cCCCCCCCHHHHHHHH
Confidence 6678888888888888887763 33334556666664443332 2333333332 2233345678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 116 EQVNQRYNNLNTSIINRGKALNSA 139 (186)
Q Consensus 116 ~~l~~rw~~L~~~~~~r~~~Le~~ 139 (186)
+.|...-.-|..-+..|...|+..
T Consensus 170 ~~ie~QV~~Le~~L~~k~~eL~~L 193 (195)
T PF12761_consen 170 DTIEEQVDGLESHLSSKKQELQQL 193 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988888888888888887653
No 72
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=51.36 E-value=88 Score=22.39 Aligned_cols=25 Identities=8% Similarity=0.118 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Q psy3215 70 VQLREQKSIHADLHQFKQQIVLFNQ 94 (186)
Q Consensus 70 ~~l~~~k~l~~ei~~~~~~~~~l~~ 94 (186)
..-++.+.++.++..-...+.....
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~e 101 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTE 101 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555444433
No 73
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=50.65 E-value=1.8e+02 Score=25.77 Aligned_cols=79 Identities=8% Similarity=0.060 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy3215 10 REHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQI 89 (186)
Q Consensus 10 ~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~ 89 (186)
...+..+...+..-.+.|....... .....-..++...-..+....|-++..+.+....+++...++-.+.....+
T Consensus 160 ~~~~~~~~~~~~~~~~~L~~l~~~~----~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i~~~~~~~~ 235 (563)
T TIGR00634 160 VKAYRELYQAWLKARQQLKDRQQKE----QELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKLRELSQNAL 235 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 3344444444444444444443332 334444455555455566666777888888888888777766665555555
Q ss_pred HHH
Q psy3215 90 VLF 92 (186)
Q Consensus 90 ~~l 92 (186)
..|
T Consensus 236 ~~L 238 (563)
T TIGR00634 236 AAL 238 (563)
T ss_pred HHH
Confidence 544
No 74
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=50.47 E-value=2.6e+02 Score=27.50 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHh
Q psy3215 37 YDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLIS 101 (186)
Q Consensus 37 f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~ 101 (186)
...++......|..++.....-. ..+.+.+...+.+...+..++......+..|......+..
T Consensus 318 ~~~~l~~~~~~L~~i~~~~~~ye--~~~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~~~di~~ 380 (1201)
T PF12128_consen 318 LNADLARIKSELDEIEQQKKDYE--DADIEQLIARVDQLPEWRNELENLQEQLDLLTSKHQDIES 380 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444322 1355666666666666666666666666666665555443
No 75
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=50.17 E-value=65 Score=20.49 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=38.0
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 77 SIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKAL 136 (186)
Q Consensus 77 ~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~L 136 (186)
.+.++|..-..++.++......+....+ +...+..+++.++.+-..|...+..-...|
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~~~~~--~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLESNLP--DVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556677777777777777777666553 456677777777777777776555544433
No 76
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=50.03 E-value=1.9e+02 Score=25.77 Aligned_cols=121 Identities=14% Similarity=0.226 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHH
Q psy3215 3 LHKITKLREHWDE-TNNKVMARKTQLDSMLSDSQRY-----DAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQK 76 (186)
Q Consensus 3 ~~~l~~l~~~W~~-L~~~~~~r~~~L~~~l~~~~~f-----~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k 76 (186)
.......+..|+. +......-...|.++-.....| ...++++..=|+.+|..+... ...+...+..++
T Consensus 63 ~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~~~f~~a~~~~~~~~~~l~~~e~~~~~i------~~~l~~l~~~e~ 136 (569)
T PRK04778 63 EEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQI------LEELQELLESEE 136 (569)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 3466778888988 5555666666676666554444 344555555566666555432 334444555555
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHH
Q psy3215 77 SIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSII 130 (186)
Q Consensus 77 ~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~ 130 (186)
.-..+|......+..+....-.-.-.. ......|..+++.+...+..+.....
T Consensus 137 ~nr~~v~~l~~~y~~~rk~ll~~~~~~-G~a~~~le~~l~~~e~~f~~f~~l~~ 189 (569)
T PRK04778 137 KNREEVEQLKDLYRELRKSLLANRFSF-GPALDELEKQLENLEEEFSQFVELTE 189 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccc-cchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555555555554443321111111 12456788888888888877766543
No 77
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=49.90 E-value=1.3e+02 Score=26.02 Aligned_cols=51 Identities=18% Similarity=0.321 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy3215 109 TRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSE 159 (186)
Q Consensus 109 ~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e 159 (186)
..+..++..+..+-..+..++..+..+|..-+..+..+...+.....||..
T Consensus 409 ~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~ 459 (462)
T PRK08032 409 DGVNKTLKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQ 459 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888888888888888888888888865
No 78
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=49.75 E-value=1.3e+02 Score=23.74 Aligned_cols=126 Identities=13% Similarity=0.270 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q psy3215 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHAD 81 (186)
Q Consensus 2 i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~e 81 (186)
+++-|..+...-+.++....+....+++.-.+...+..++.++..=+...+..+.. .++... +.+|..|
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~----v~~~~e-------~~aL~~E 97 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA----VKDERE-------LRALNIE 97 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cccHHH-------HHHHHHH
Confidence 45566777777777788888888888877777777888888888888888887732 234333 4445555
Q ss_pred HHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 82 LHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSL 143 (186)
Q Consensus 82 i~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~ 143 (186)
|..-+.....+......|... -..+...+..+..+..++...+.+-...++..+...
T Consensus 98 ~~~ak~r~~~le~el~~l~~~-----~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i 154 (239)
T COG1579 98 IQIAKERINSLEDELAELMEE-----IEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEI 154 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555554432 234566666666666666666666666666655443
No 79
>KOG3958|consensus
Probab=49.47 E-value=1.4e+02 Score=24.32 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCC----CC------CCHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhhc-cc-
Q psy3215 39 AKRQEVDGWLTRMENRMQRMNP----VG------YTADVLEVQLREQKSIHADL-HQFKQQIVLFNQLTQKLISVY-QH- 105 (186)
Q Consensus 39 ~~~~~l~~WL~~~E~~l~~~~~----~~------~d~~~l~~~l~~~k~l~~ei-~~~~~~~~~l~~~~~~L~~~~-~~- 105 (186)
+.+.+++.-|++.|..+...++ .+ .-.+.++-.--+...+.-.. ...+..+.++....+.+.... ..
T Consensus 191 akVA~LE~Rlt~lE~vvg~~~d~~~~lsa~~~~a~vletVe~L~~k~s~l~~~~ld~vEqRL~s~lgK~~~IaEk~~~s~ 270 (371)
T KOG3958|consen 191 AKVAELEKRLTELETVVGCDQDAQNPLSAGLQGACVLETVELLQAKVSALDLAVLDQVEQRLQSVLGKVNEIAEKHKASV 270 (371)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCchhhccCCchHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 5678899999999988876321 11 12344544444444444332 333444444444444444221 11
Q ss_pred --CchhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHh
Q psy3215 106 --DDTTRVKKITEQVNQRYNNLNTSIIN---RGKALNSAMSSLQNFDKSIDNFLAWLSEAESTM 164 (186)
Q Consensus 106 --~~~~~i~~~l~~l~~rw~~L~~~~~~---r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e~~L 164 (186)
++...--..+=++-+||+-+++.+-. |...|+....+..+|.+.+.++..=-..+...|
T Consensus 271 ~Da~~d~KV~elye~~qrw~pi~stLP~~V~rl~al~~LHeqa~~Fa~~lthl~t~q~~i~~sl 334 (371)
T KOG3958|consen 271 EDADTDSKVHELYETIQRWSPIASTLPELVQRLVALKQLHEQAMQFAQLLTHLDTTQQMIANSL 334 (371)
T ss_pred ccchhhhhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222223334467899999998765 556667777777788887777665554444444
No 80
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=48.84 E-value=89 Score=21.72 Aligned_cols=15 Identities=20% Similarity=0.541 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHH
Q psy3215 40 KRQEVDGWLTRMENR 54 (186)
Q Consensus 40 ~~~~l~~WL~~~E~~ 54 (186)
++.+++.|..-+|..
T Consensus 86 EiGDveNWa~~iE~D 100 (121)
T PF06320_consen 86 EIGDVENWAEMIERD 100 (121)
T ss_pred hhccHHHHHHHHHHH
Confidence 333444444444433
No 81
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=48.61 E-value=79 Score=21.06 Aligned_cols=62 Identities=16% Similarity=0.292 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 75 QKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNS 138 (186)
Q Consensus 75 ~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~ 138 (186)
...+..+|......+..|...-..+..... ....++.++..+...-..+...+..+.+.|+.
T Consensus 10 v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~--~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~ 71 (117)
T smart00503 10 VEEIRANIQKISQNVAELQKLHEELLTPPD--ADKELREKLERLIDDIKRLAKEIRAKLKELEK 71 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444432211 11334444444444444444444444444443
No 82
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=48.12 E-value=73 Score=20.49 Aligned_cols=66 Identities=20% Similarity=0.347 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 72 LREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSA 139 (186)
Q Consensus 72 l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~ 139 (186)
+.....+..+|......+..|...-...+.... ....++..++.+...-..+...+..+.+.|...
T Consensus 6 ~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~--~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 6 FDEVQEIREDIDKIKEKLNELRKLHKKILSSPD--QDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666666555554432 124667777777766666666666666666665
No 83
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=47.29 E-value=2.1e+02 Score=25.45 Aligned_cols=145 Identities=12% Similarity=0.164 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CCHHHHHHHHHHHHHHHHH
Q psy3215 4 HKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVG--YTADVLEVQLREQKSIHAD 81 (186)
Q Consensus 4 ~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~--~d~~~l~~~l~~~k~l~~e 81 (186)
.++......|++|...+..++.++..++.. |...++.+..=+.+-+..-++..|+. ..++.++..+...+++...
T Consensus 139 ~~i~~~~ely~elr~~vl~n~~~~Ge~~~~---lEk~Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~~e~ 215 (570)
T COG4477 139 EEIDHVLELYEELRRDVLANRHQYGEAAPE---LEKKLENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSIMER 215 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhHH---HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777777653 55666666666666554333223332 1334455666666666665
Q ss_pred HHhhH--------HHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 82 LHQFK--------QQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNF 153 (186)
Q Consensus 82 i~~~~--------~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l 153 (186)
|-+.- +++..|..-.+.|...+..-....|..+++.|..........+.. -.|+++-......+..++.+
T Consensus 216 IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~gY~l~~~~id~~~~~L~~~l~~~~~~l~~--Leld~aeeel~~I~e~ie~l 293 (570)
T COG4477 216 IPSLLAELQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQ--LELDEAEEELGLIQEKIESL 293 (570)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHhHHHH--hhhhhHHHHHHHHHHHHHHH
Confidence 54432 345556666666666654444566777777766666544443322 23444444433344444333
No 84
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=46.58 E-value=1e+02 Score=21.62 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy3215 111 VKKITEQVNQRYNNLNTSIIN 131 (186)
Q Consensus 111 i~~~l~~l~~rw~~L~~~~~~ 131 (186)
.+..+......|..=...+..
T Consensus 85 a~~~l~~~e~sw~~qk~~le~ 105 (132)
T PF07926_consen 85 AKAELEESEASWEEQKEQLEK 105 (132)
T ss_pred HHHHHHHHHHhHHHHHHHHHH
Confidence 334444444444443333333
No 85
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=46.55 E-value=81 Score=20.55 Aligned_cols=16 Identities=19% Similarity=0.409 Sum_probs=7.0
Q ss_pred HHHHHHhhHHHHHHHH
Q psy3215 78 IHADLHQFKQQIVLFN 93 (186)
Q Consensus 78 l~~ei~~~~~~~~~l~ 93 (186)
+..+|......++.+.
T Consensus 3 l~~~l~~l~~d~~~l~ 18 (94)
T PF05957_consen 3 LKAELEQLRADLEDLA 18 (94)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 86
>KOG0933|consensus
Probab=45.77 E-value=2.9e+02 Score=26.70 Aligned_cols=89 Identities=16% Similarity=0.226 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhH
Q psy3215 10 REHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVD---GWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFK 86 (186)
Q Consensus 10 ~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~---~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~ 86 (186)
......+...+..-...|...-...+.|..--.++. .=|+-.+..+... +.....+.++......+..+.+|....
T Consensus 683 ~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~-e~~~~~~~~~~~~e~v~e~~~~Ike~~ 761 (1174)
T KOG0933|consen 683 QKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQN-EFHKLLDDLKELLEEVEESEQQIKEKE 761 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444455544433333 3344444444432 344566667777777777777776666
Q ss_pred HHHHHHHHHHHHH
Q psy3215 87 QQIVLFNQLTQKL 99 (186)
Q Consensus 87 ~~~~~l~~~~~~L 99 (186)
..+..-.+.+..|
T Consensus 762 ~~~k~~~~~i~~l 774 (1174)
T KOG0933|consen 762 RALKKCEDKISTL 774 (1174)
T ss_pred HHHHHHHHHHHHH
Confidence 5555544444333
No 87
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=45.68 E-value=2e+02 Score=24.91 Aligned_cols=77 Identities=13% Similarity=0.186 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 62 GYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAM 140 (186)
Q Consensus 62 ~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~ 140 (186)
-.+|+.+...+..+..-+..|.. ..+..|...+.-+.+..+..........+..++..|...+..+-.+.+.+.+..
T Consensus 200 ~~~P~~~~~~~e~~~~~Q~~l~~--~r~~~L~~l~~l~Pp~~t~~~v~eW~~~l~~l~~~~d~~~~~~~~~lr~~~E~~ 276 (473)
T PF14643_consen 200 FQNPPERKQLLEQMRKEQVDLHE--KRLELLQSLCDLLPPNLTKEKVEEWYASLNALNEQIDEYHQQCMEKLRALYEKI 276 (473)
T ss_pred cCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888888888888887764 445556666555544444444567777788888888888877777777666654
No 88
>KOG0250|consensus
Probab=44.82 E-value=3e+02 Score=26.64 Aligned_cols=37 Identities=8% Similarity=0.168 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3215 21 MARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQR 57 (186)
Q Consensus 21 ~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~ 57 (186)
.+...+|..+...-..++..+..+..=+.....+...
T Consensus 277 ~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~ 313 (1074)
T KOG0250|consen 277 NEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEE 313 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555666666555555544443
No 89
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=44.69 E-value=1.6e+02 Score=23.43 Aligned_cols=90 Identities=9% Similarity=0.227 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCHHH--------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhH
Q psy3215 39 AKRQEVDGWLTRMENRMQRMNPVGYTADV--------LEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTR 110 (186)
Q Consensus 39 ~~~~~l~~WL~~~E~~l~~~~~~~~d~~~--------l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~ 110 (186)
...+.+..-|..+|..+...+-.-.|+.. --..|.+--.+..|+..++..+..|.+.-..++.....++...
T Consensus 210 ~kAnsVldRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~Qa~~l~~aR~~errk 289 (311)
T PF04642_consen 210 EKANSVLDRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEEQAEMLRAARTEERRK 289 (311)
T ss_pred HHHHHHHHHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 34555666666666666554421122211 2344566667788888899999888877777777766667778
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3215 111 VKKITEQVNQRYNNLNTS 128 (186)
Q Consensus 111 i~~~l~~l~~rw~~L~~~ 128 (186)
++.+..+.++.|..+...
T Consensus 290 vraqf~dfsskyg~f~~~ 307 (311)
T PF04642_consen 290 VRAQFHDFSSKYGNFFKE 307 (311)
T ss_pred HHHHHHHhHHhhhhhhhh
Confidence 888888888877766543
No 90
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=44.63 E-value=1.1e+02 Score=21.52 Aligned_cols=9 Identities=22% Similarity=0.575 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy3215 145 NFDKSIDNF 153 (186)
Q Consensus 145 ~f~~~~~~l 153 (186)
.|...+..|
T Consensus 96 ~f~~~m~~f 104 (151)
T cd00179 96 KFVEVMTEF 104 (151)
T ss_pred HHHHHHHHH
Confidence 344443333
No 91
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.63 E-value=3.4e+02 Score=26.94 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy3215 38 DAKRQEVDGWLTRMENRMQ 56 (186)
Q Consensus 38 ~~~~~~l~~WL~~~E~~l~ 56 (186)
..++.++..=+...+..+.
T Consensus 798 ~~ei~~l~~qie~l~~~l~ 816 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQ 816 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4455555555555555444
No 92
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=43.37 E-value=2.7e+02 Score=25.73 Aligned_cols=59 Identities=10% Similarity=0.195 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHhHhhhhH
Q psy3215 110 RVKKITEQVNQRYNNLNTSIINRGKALN----SAMSSLQNFDKSIDNFLAWLSEAESTMECVE 168 (186)
Q Consensus 110 ~i~~~l~~l~~rw~~L~~~~~~r~~~Le----~~~~~~~~f~~~~~~l~~Wl~e~e~~L~~~~ 168 (186)
.+.++.+.+..|-+.+...+..+...|- +....++.|...+..+...|+.+..+++...
T Consensus 604 ~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~ 666 (717)
T PF10168_consen 604 EAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQ 666 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455544444433222111 1223355666667777777777766666543
No 93
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=43.22 E-value=2.4e+02 Score=25.08 Aligned_cols=88 Identities=13% Similarity=0.178 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC--CCCCCHHHH-------HHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHH
Q psy3215 37 YDAKRQEVDGWLTRMENRMQRMN--PVGYTADVL-------EVQLREQKSIHADLHQF--------KQQIVLFNQLTQKL 99 (186)
Q Consensus 37 f~~~~~~l~~WL~~~E~~l~~~~--~~~~d~~~l-------~~~l~~~k~l~~ei~~~--------~~~~~~l~~~~~~L 99 (186)
|-..+..+..=|...|..+..-. -.+||+... +..+..++....+|-.. =.++..|..-...|
T Consensus 163 ~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m 242 (569)
T PRK04778 163 FGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYREL 242 (569)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44555566666666665554432 123455443 33344444444444111 13334444445555
Q ss_pred HhhcccCchhHHHHHHHHHHHHHHH
Q psy3215 100 ISVYQHDDTTRVKKITEQVNQRYNN 124 (186)
Q Consensus 100 ~~~~~~~~~~~i~~~l~~l~~rw~~ 124 (186)
...+...+...|..++..+..+-..
T Consensus 243 ~~~gy~~~~~~i~~~i~~l~~~i~~ 267 (569)
T PRK04778 243 VEEGYHLDHLDIEKEIQDLKEQIDE 267 (569)
T ss_pred HHcCCCCCCCChHHHHHHHHHHHHH
Confidence 5544333333455555555555544
No 94
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=42.84 E-value=1.2e+02 Score=21.29 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=34.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 107 DTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDN 152 (186)
Q Consensus 107 ~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~ 152 (186)
....|+..+..|+.-+..|...+.+.-.++......+...+..++=
T Consensus 73 ~l~~v~~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~L 118 (132)
T PF10392_consen 73 VLQAVRSSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDL 118 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888888888877777777666666665543
No 95
>PRK09039 hypothetical protein; Validated
Probab=42.74 E-value=2e+02 Score=23.89 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHh
Q psy3215 41 RQEVDGWLTRMENRM 55 (186)
Q Consensus 41 ~~~l~~WL~~~E~~l 55 (186)
+.....=|+..+..+
T Consensus 48 i~~~~~eL~~L~~qI 62 (343)
T PRK09039 48 ISGKDSALDRLNSQI 62 (343)
T ss_pred HhhHHHHHHHHHHHH
Confidence 333333333333333
No 96
>KOG2391|consensus
Probab=42.70 E-value=2e+02 Score=23.97 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhHHH
Q psy3215 143 LQNFDKSIDNFLAWLSE 159 (186)
Q Consensus 143 ~~~f~~~~~~l~~Wl~e 159 (186)
++.++.+++-|.+|..+
T Consensus 262 ~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 262 LQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHhhhHHHHHHHHH
Confidence 34445555556666655
No 97
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=42.29 E-value=1.9e+02 Score=23.65 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy3215 121 RYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEA 160 (186)
Q Consensus 121 rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~ 160 (186)
.-..+...+..+++.|.+.-.........++.+..=+.+.
T Consensus 217 eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l 256 (325)
T PF08317_consen 217 ELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQEL 256 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444443333333333333333333333
No 98
>KOG4302|consensus
Probab=42.00 E-value=2.8e+02 Score=25.41 Aligned_cols=94 Identities=10% Similarity=0.170 Sum_probs=48.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCCCCHHHHHHHHHHHHHH
Q psy3215 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRM---NPVGYTADVLEVQLREQKSI 78 (186)
Q Consensus 2 i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~---~~~~~d~~~l~~~l~~~k~l 78 (186)
|.+.+..|...-+.+..+-.+|.+.+.+...+.+ .+..=|..-+. +... ++..-+...++..-.+...+
T Consensus 101 Lke~l~~l~~~le~lr~qk~eR~~ef~el~~qie-------~l~~~l~g~~~-~~~~~~~D~~dlsl~kLeelr~~L~~L 172 (660)
T KOG4302|consen 101 LKEQLESLKPYLEGLRKQKDERRAEFKELYHQIE-------KLCEELGGPED-LPSFLIADESDLSLEKLEELREHLNEL 172 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcCCcc-CCcccccCcccccHHHHHHHHHHHHHH
Confidence 3445555555555555555566555555554433 22222222210 0000 01111224456666666778
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhc
Q psy3215 79 HADLHQFKQQIVLFNQLTQKLISVY 103 (186)
Q Consensus 79 ~~ei~~~~~~~~~l~~~~~~L~~~~ 103 (186)
+++...+-..|..+......|+..-
T Consensus 173 ~~ek~~Rlekv~~~~~~I~~l~~~L 197 (660)
T KOG4302|consen 173 QKEKSDRLEKVLELKEEIKSLCSVL 197 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888777777777777766543
No 99
>PF10792 DUF2605: Protein of unknown function (DUF2605); InterPro: IPR019728 This entry represents a protein conserved in Cyanobacteria. The function is not known.
Probab=41.00 E-value=1.1e+02 Score=20.50 Aligned_cols=54 Identities=7% Similarity=0.126 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy3215 37 YDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIV 90 (186)
Q Consensus 37 f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~ 90 (186)
+..-+++|.-|....+..|...+..--+++.-...+.+.+.-+.||.+-+.-+.
T Consensus 12 L~pLLeDF~yWF~Rs~~LLe~e~~~fls~~eQ~~Ll~Rv~qaq~ev~aa~~Lf~ 65 (98)
T PF10792_consen 12 LEPLLEDFQYWFSRSRELLETEPISFLSPEEQSDLLERVKQAQQEVNAARALFQ 65 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456679999999999999987753335777788888888888888877665543
No 100
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=40.92 E-value=48 Score=17.01 Aligned_cols=20 Identities=15% Similarity=0.486 Sum_probs=15.2
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q psy3215 107 DTTRVKKITEQVNQRYNNLN 126 (186)
Q Consensus 107 ~~~~i~~~l~~l~~rw~~L~ 126 (186)
+...|.++.+-+|.-|..+.
T Consensus 7 Nr~Ki~e~t~iLN~eWk~lR 26 (30)
T PF11616_consen 7 NRQKIQERTDILNEEWKKLR 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 45678999999999998875
No 101
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=39.54 E-value=89 Score=19.03 Aligned_cols=79 Identities=16% Similarity=0.255 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 63 YTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSS 142 (186)
Q Consensus 63 ~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~ 142 (186)
.|++.+......+.....+|. ..+..|......|...=....+.........+...+..+...+..-...|..+...
T Consensus 4 vd~~~l~~~a~~~~~~~~~l~---~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~ 80 (86)
T PF06013_consen 4 VDPEQLRAAAQQLQAQADELQ---SQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALEELSQALRQAAQN 80 (86)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777555555544 44455555555663332234567788888888888888888888888888777655
Q ss_pred HH
Q psy3215 143 LQ 144 (186)
Q Consensus 143 ~~ 144 (186)
+.
T Consensus 81 ~~ 82 (86)
T PF06013_consen 81 YE 82 (86)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 102
>KOG3478|consensus
Probab=39.51 E-value=1.3e+02 Score=20.75 Aligned_cols=70 Identities=20% Similarity=0.294 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 67 VLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKAL 136 (186)
Q Consensus 67 ~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~L 136 (186)
.++.+|.+.+.+..|++-..+.-.-..-.|.-|......+....+..+++-++.--..+.+.+..-.+.+
T Consensus 30 kle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~ 99 (120)
T KOG3478|consen 30 KLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEF 99 (120)
T ss_pred HHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777777666655555555555555544333445566666555555555444444444333
No 103
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=39.39 E-value=1.3e+02 Score=21.08 Aligned_cols=66 Identities=9% Similarity=0.195 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHH
Q psy3215 7 TKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSI 78 (186)
Q Consensus 7 ~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l 78 (186)
+.+..+-++|.+.+..-+.+|.+-+.. .-..+++..+--..+...+.. +..|.+.+...+......
T Consensus 46 ~~v~kql~~vs~~l~~tKkhLsqRId~---vd~klDe~~ei~~~i~~eV~~---v~~dv~~i~~dv~~v~~~ 111 (126)
T PF07889_consen 46 ASVSKQLEQVSESLSSTKKHLSQRIDR---VDDKLDEQKEISKQIKDEVTE---VREDVSQIGDDVDSVQQM 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHH
Confidence 344445555555555555555554433 334445555444555555543 234555555555543333
No 104
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=38.84 E-value=1.4e+02 Score=20.94 Aligned_cols=64 Identities=11% Similarity=0.135 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy3215 38 DAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVY 103 (186)
Q Consensus 38 ~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~ 103 (186)
...+..+..=+.+++..+... +....+.+-.+....+.++..+...++.+..|+....+|-...
T Consensus 32 ~~~l~kL~~~i~eld~~i~~~--v~~~~~~LL~q~~~~~~~~~~l~~v~~~v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 32 STPLKKLNFDIQELDKRIRSQ--VTSNHEDLLSQASSIEELESVLQAVRSSVESLQSSYERLRSEV 95 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHhCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555566666666544 4456777777777777787777777888877777777765543
No 105
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=38.59 E-value=1.7e+02 Score=21.99 Aligned_cols=96 Identities=6% Similarity=0.195 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-CchhHHHHHHHHHHHHHHHHHHHHH-------HHH--
Q psy3215 64 TADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQH-DDTTRVKKITEQVNQRYNNLNTSII-------NRG-- 133 (186)
Q Consensus 64 d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~-~~~~~i~~~l~~l~~rw~~L~~~~~-------~r~-- 133 (186)
...........+..+..++......+..+..........-+. .+...+-.++..+...-..|...+. ++.
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~ 139 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEK 139 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 346677888889999999999999999998877776443322 2344555555666666655555555 222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy3215 134 --KALNSAMSSLQNFDKSIDNFLAWLSE 159 (186)
Q Consensus 134 --~~Le~~~~~~~~f~~~~~~l~~Wl~e 159 (186)
..+..+...+..+..++..+..|+..
T Consensus 140 ~~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 140 LKEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 33334444455677777777777766
No 106
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=37.42 E-value=3.1e+02 Score=24.72 Aligned_cols=32 Identities=9% Similarity=0.190 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 109 TRVKKITEQVNQRYNNLNTSIINRGKALNSAM 140 (186)
Q Consensus 109 ~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~ 140 (186)
..-..++..|...|+.....+.+..+.|....
T Consensus 404 ~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~ 435 (594)
T PF05667_consen 404 EASEQRLVELAQQWEKHRAPLIEEYRRLKEKA 435 (594)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34566777788888888888888777777543
No 107
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=37.40 E-value=1.1e+02 Score=19.55 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 112 KKITEQVNQRYNNLNTSIINRGKALNSA 139 (186)
Q Consensus 112 ~~~l~~l~~rw~~L~~~~~~r~~~Le~~ 139 (186)
+.+++++..-...-...+-+|+.+|+..
T Consensus 9 ~~~v~~v~~im~~Ni~~ll~Rge~L~~L 36 (89)
T PF00957_consen 9 QEQVEEVKNIMRENIDKLLERGEKLEEL 36 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 3333333333333333333444444333
No 108
>PRK07737 fliD flagellar capping protein; Validated
Probab=36.61 E-value=2.9e+02 Score=24.26 Aligned_cols=52 Identities=10% Similarity=0.128 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy3215 109 TRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEA 160 (186)
Q Consensus 109 ~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~ 160 (186)
..|..++..++.+...+..++..+..+|..-+..+......+..-..||...
T Consensus 444 ~~l~~~i~~l~~~i~~~~~rl~~~e~ry~~qf~ale~~~s~mnsq~s~L~~~ 495 (501)
T PRK07737 444 FAIGKDLNQIETQIDRFQDRLKQIEDRYYKKFSAMEKAIQKANEQSMYLMNA 495 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688889999999999999999988888777777777777788888888654
No 109
>PRK06798 fliD flagellar capping protein; Validated
Probab=35.79 E-value=2.9e+02 Score=23.82 Aligned_cols=53 Identities=8% Similarity=0.176 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy3215 108 TTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEA 160 (186)
Q Consensus 108 ~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~ 160 (186)
...+..++..+..+.+.+..+...|..+|..-+..+......+..-..||..+
T Consensus 381 ~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ale~~ms~lnsQ~s~l~~~ 433 (440)
T PRK06798 381 SKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQKLESTLAALDSQLKTIKAM 433 (440)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777776666666555556666666666543
No 110
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.41 E-value=99 Score=18.39 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=9.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHH
Q psy3215 78 IHADLHQFKQQIVLFNQLTQKL 99 (186)
Q Consensus 78 l~~ei~~~~~~~~~l~~~~~~L 99 (186)
+..+|+.....+..+.....-+
T Consensus 26 i~~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 26 ISESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444333
No 111
>KOG0860|consensus
Probab=35.21 E-value=1.5e+02 Score=20.50 Aligned_cols=11 Identities=9% Similarity=0.277 Sum_probs=4.9
Q ss_pred HHHHHHHHHHh
Q psy3215 74 EQKSIHADLHQ 84 (186)
Q Consensus 74 ~~k~l~~ei~~ 84 (186)
+.+.++.+++.
T Consensus 30 k~~~tq~Qvde 40 (116)
T KOG0860|consen 30 KLQQTQAQVDE 40 (116)
T ss_pred HHHHHHHHHHH
Confidence 33445554443
No 112
>KOG0161|consensus
Probab=35.03 E-value=5.5e+02 Score=26.89 Aligned_cols=27 Identities=19% Similarity=0.302 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3215 73 REQKSIHADLHQFKQQIVLFNQLTQKL 99 (186)
Q Consensus 73 ~~~k~l~~ei~~~~~~~~~l~~~~~~L 99 (186)
..++.+..++...+..+..+...+..|
T Consensus 992 e~~~~l~~~l~~~eek~~~l~k~~~kl 1018 (1930)
T KOG0161|consen 992 ERIRELQDDLQAEEEKAKSLNKAKAKL 1018 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555554444444
No 113
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=34.87 E-value=3.5e+02 Score=24.54 Aligned_cols=74 Identities=12% Similarity=0.225 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc--CchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 61 VGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQH--DDTTRVKKITEQVNQRYNNLNTSIINRGK 134 (186)
Q Consensus 61 ~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~--~~~~~i~~~l~~l~~rw~~L~~~~~~r~~ 134 (186)
+.+|-.++.+.+..-+.|...+...+..+..|+..-..|...-.. .-...+..++..+...|..+...+...-.
T Consensus 148 lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~q 223 (617)
T PF15070_consen 148 LQSDKATASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQ 223 (617)
T ss_pred hcccchHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 345666788888888999999998888888887665444332211 12356778888888888888877766644
No 114
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=34.79 E-value=1.6e+02 Score=20.49 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhccc------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q psy3215 88 QIVLFNQLTQKLISVYQH------DDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAE 161 (186)
Q Consensus 88 ~~~~l~~~~~~L~~~~~~------~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e 161 (186)
-+.++...+..|.+.... .....|......|......|...+..+....+..-. =...+.+++.|..-+|
T Consensus 23 a~~s~~~l~~~l~d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~----~LKEiGDveNWa~~iE 98 (121)
T PF06320_consen 23 AIASAQALTNALVDHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFND----ALKEIGDVENWAEMIE 98 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhccHHHHHHHHH
Confidence 334445555555443321 133566666677777777777776666654433322 2334577899999999
Q ss_pred hHhhhhHHHh
Q psy3215 162 STMECVEVET 171 (186)
Q Consensus 162 ~~L~~~~~~~ 171 (186)
..+..+...+
T Consensus 99 ~Dl~~i~~~L 108 (121)
T PF06320_consen 99 RDLRVIEETL 108 (121)
T ss_pred HHHHHHHHHH
Confidence 9998876544
No 115
>KOG0161|consensus
Probab=34.44 E-value=5.7e+02 Score=26.83 Aligned_cols=53 Identities=11% Similarity=0.223 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy3215 108 TTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEA 160 (186)
Q Consensus 108 ~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~ 160 (186)
...+...+..+..+-..|...+...+.....+-.....+...+.++..=|.+.
T Consensus 1092 ~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~ 1144 (1930)
T KOG0161|consen 1092 VAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQ 1144 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666766666666666666555556666666666666665
No 116
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=34.20 E-value=2.6e+02 Score=22.79 Aligned_cols=31 Identities=35% Similarity=0.405 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 5 KITKLREHWDETNNKVMARKTQLDSMLSDSQ 35 (186)
Q Consensus 5 ~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~ 35 (186)
+.+.+..+.+.++..+.+-+..-.+.....+
T Consensus 56 ~~~elr~~rdeineev~elK~kR~ein~kl~ 86 (294)
T COG1340 56 KAQELREERDEINEEVQELKEKRDEINAKLQ 86 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444444444443333
No 117
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=33.98 E-value=3.1e+02 Score=23.62 Aligned_cols=64 Identities=14% Similarity=0.194 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy3215 36 RYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLI 100 (186)
Q Consensus 36 ~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~ 100 (186)
.....+++|+.++.++...+...+ +-..+..++...++...+..+|...+..+..+.-....++
T Consensus 217 ~Ll~kVdDLQD~VE~LRkDV~~Rg-vRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 217 RLLTKVDDLQDLVEDLRKDVVQRG-VRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 355666777777777666666554 2223444444444445555555555554444444444433
No 118
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=33.45 E-value=2.1e+02 Score=21.50 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy3215 66 DVLEVQLREQKSIHADLHQFKQQIVLFNQL 95 (186)
Q Consensus 66 ~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~ 95 (186)
+.=...+.+++.+..++...+..+......
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~~ 132 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSEN 132 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566777777777777777777655443
No 119
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=33.27 E-value=1.1e+02 Score=18.27 Aligned_cols=16 Identities=19% Similarity=0.497 Sum_probs=8.8
Q ss_pred chhHHHHHHHHHHHHH
Q psy3215 107 DTTRVKKITEQVNQRY 122 (186)
Q Consensus 107 ~~~~i~~~l~~l~~rw 122 (186)
++..-..+++.+...|
T Consensus 39 EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 39 EAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhHhhc
Confidence 4455556666655554
No 120
>PF13166 AAA_13: AAA domain
Probab=32.71 E-value=3.8e+02 Score=24.29 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHH
Q psy3215 74 EQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSI 129 (186)
Q Consensus 74 ~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~ 129 (186)
....+...|..+-..+..+......+...........+...+..+..+|..+...+
T Consensus 371 ~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 426 (712)
T PF13166_consen 371 IIDELNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEI 426 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555544444444433333322211112233333344444554444333
No 121
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=32.70 E-value=1.2e+02 Score=18.54 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=26.1
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHH
Q psy3215 80 ADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLN 126 (186)
Q Consensus 80 ~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~ 126 (186)
.+....-..-..|.+.+..|.... +.......+..+..+|..+.
T Consensus 27 ~~~~~n~~~K~~Li~~~~~l~~~~---d~~~~~~~~k~l~~~Wk~iG 70 (77)
T PF03993_consen 27 AEREENLEKKEALIEEAEALAESE---DWKEAAEEIKELQQEWKEIG 70 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc---cHHHHHHHHHHHHHHHHHcC
Confidence 333344444455555555555432 35677778888888887764
No 122
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=32.55 E-value=2.5e+02 Score=22.20 Aligned_cols=88 Identities=9% Similarity=0.066 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 69 EVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDK 148 (186)
Q Consensus 69 ~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~ 148 (186)
...+.....+-..+....+.+..+......+...-. .....+..-+..+..--..+...+......+..++..+..+..
T Consensus 191 ~~ll~~l~~l~~~l~~~~~~l~~~v~~l~~~~~~l~-~~~~~l~~~l~~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~ 269 (291)
T TIGR00996 191 GALIDNLNRVLDVLADRSDQLDRLLDNLATLTAQLA-DRDDALDDALAALSGASAQVRDLLAENRPNLPQALANLAPVLT 269 (291)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 333333444444444444444444333333333221 1223344444443333334444444444444444444444444
Q ss_pred HHHHHHHhH
Q psy3215 149 SIDNFLAWL 157 (186)
Q Consensus 149 ~~~~l~~Wl 157 (186)
.+.....+|
T Consensus 270 ~l~~~~~~l 278 (291)
T TIGR00996 270 LLVDYHPEL 278 (291)
T ss_pred HHHhcchhH
Confidence 444333333
No 123
>PHA02562 46 endonuclease subunit; Provisional
Probab=31.58 E-value=3.5e+02 Score=23.59 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=6.2
Q ss_pred HHHHHHHHHhhHHHHH
Q psy3215 75 QKSIHADLHQFKQQIV 90 (186)
Q Consensus 75 ~k~l~~ei~~~~~~~~ 90 (186)
...++.++......+.
T Consensus 308 i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 308 LKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444443333333
No 124
>PRK01156 chromosome segregation protein; Provisional
Probab=31.18 E-value=4.5e+02 Score=24.69 Aligned_cols=8 Identities=0% Similarity=-0.018 Sum_probs=3.3
Q ss_pred HHHHHhHH
Q psy3215 151 DNFLAWLS 158 (186)
Q Consensus 151 ~~l~~Wl~ 158 (186)
..+..|+.
T Consensus 739 ~~~r~~l~ 746 (895)
T PRK01156 739 KRLREAFD 746 (895)
T ss_pred HHHHHHhh
Confidence 33444443
No 125
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=30.13 E-value=2.9e+02 Score=22.15 Aligned_cols=58 Identities=14% Similarity=0.210 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhh
Q psy3215 109 TRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMEC 166 (186)
Q Consensus 109 ~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e~~L~~ 166 (186)
..++..+.++...=.+|..++..++..|+.+-+.++.++..--.|++=-+..|..|..
T Consensus 179 ~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 179 QQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 4455556666666666777777777777777776666665544444444445555543
No 126
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=29.56 E-value=3e+02 Score=22.17 Aligned_cols=148 Identities=10% Similarity=0.168 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy3215 13 WDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLF 92 (186)
Q Consensus 13 W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l 92 (186)
=..+.....++.++++..............++..-+..+-..|..--.++. ....++ ..|-..+......|..+
T Consensus 113 na~i~k~lAeeNqKIq~gi~EL~Kl~~e~~~l~kTi~~TIa~lEKKFqI~~---~FKekL---esfa~~L~~KS~eI~tF 186 (353)
T PF01540_consen 113 NAQIDKKLAEENQKIQNGIEELKKLSNEAFELSKTINKTIAKLEKKFQIDK---DFKEKL---ESFADLLNKKSREIDTF 186 (353)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCcH---HHHHHH---HHHHHHHHHHHHHHHHH
Confidence 344556668888888888888777877777777777666666654332322 233332 23444444444444444
Q ss_pred HHHHHHHHhhccc--CchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHhHhhh
Q psy3215 93 NQLTQKLISVYQH--DDTTRVKK-ITEQVNQRYNNLNTSIINRGKALNS---AMSSLQNFDKSIDNFLAWLSEAESTMEC 166 (186)
Q Consensus 93 ~~~~~~L~~~~~~--~~~~~i~~-~l~~l~~rw~~L~~~~~~r~~~Le~---~~~~~~~f~~~~~~l~~Wl~e~e~~L~~ 166 (186)
.......-...-. ..-..|.. -...|.+-|..+......-...+.. .+...+.+.....++..|+..+-..|..
T Consensus 187 ttv~s~k~eF~L~ELESFKEinTtwfNgmksEWA~V~~AwkneLsEINSI~~gvEeLkKLAqEIss~Sn~lk~TIseLEK 266 (353)
T PF01540_consen 187 TTVQSTKEEFVLNELESFKEINTTWFNGMKSEWARVQEAWKNELSEINSIIKGVEELKKLAQEISSHSNKLKATISELEK 266 (353)
T ss_pred HhhccchhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332221111100 00111211 1234556666665554444433332 4456677778888889998887666654
No 127
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=29.39 E-value=4.1e+02 Score=23.66 Aligned_cols=62 Identities=11% Similarity=0.247 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy3215 31 LSDSQRYDAKRQEVDGWLTRMENRMQRMN-PVGYTADVLEVQLREQKSIHADLHQFKQQIVLF 92 (186)
Q Consensus 31 l~~~~~f~~~~~~l~~WL~~~E~~l~~~~-~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l 92 (186)
+...+.|..+++++..=+..+-..+.... |+|.-.+.++.-......++++....+..+.+|
T Consensus 346 ~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~L 408 (570)
T COG4477 346 LGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSL 408 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34566788888888888888877776654 333333444444444444555544444444444
No 128
>PF13514 AAA_27: AAA domain
Probab=29.37 E-value=5.4e+02 Score=25.04 Aligned_cols=67 Identities=9% Similarity=0.242 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCC-CCCHHHHH----------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Q psy3215 37 YDAKRQEVDGWLTRMENRMQRMNPV-GYTADVLE----------VQLREQKSIHADLHQFKQQIVLFNQLTQKLISVY 103 (186)
Q Consensus 37 f~~~~~~l~~WL~~~E~~l~~~~~~-~~d~~~l~----------~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~ 103 (186)
+...-..+..|-......+...+.. ..++..+. ..+.....+...|......+..+......|....
T Consensus 696 ~~~~~~~~~~~~~~w~~~l~~~gL~~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~ri~~~~~~~~~f~~~~~~L~~~l 773 (1111)
T PF13514_consen 696 LQEAQEALEEWQEEWQEALAELGLPADASPEEALEALELLEELREALAEIRELRRRIEQMEADLAAFEEQVAALAERL 773 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444566777887777777766522 23444433 3334444445555555556666666666665543
No 129
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.88 E-value=2.9e+02 Score=21.83 Aligned_cols=44 Identities=7% Similarity=0.208 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVD 45 (186)
Q Consensus 2 i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~ 45 (186)
++.+|+.++..=..|.+.+++-..+|+........+..+++...
T Consensus 59 l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~ 102 (263)
T PRK10803 59 LQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLS 102 (263)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999999999999999999988888887777764
No 130
>KOG0933|consensus
Probab=28.67 E-value=5.5e+02 Score=24.93 Aligned_cols=67 Identities=9% Similarity=0.126 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhhhHHHhhhhhh
Q psy3215 110 RVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEVETDRQAE 176 (186)
Q Consensus 110 ~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e~~L~~~~~~~~~~~~ 176 (186)
..+..+.....+.+.+...+..+...+..+......-...++.+..=+++++..|..+....+...+
T Consensus 410 ~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~~~e~ 476 (1174)
T KOG0933|consen 410 EASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIGQEEA 476 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHH
Confidence 4455555566667777777777777777776666666677777777777777777776655554433
No 131
>KOG3564|consensus
Probab=27.64 E-value=4.3e+02 Score=23.31 Aligned_cols=70 Identities=14% Similarity=0.287 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC-CHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy3215 26 QLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGY-TADVLEVQLREQKSIHADLHQFKQQIVLFNQL 95 (186)
Q Consensus 26 ~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~-d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~ 95 (186)
-.++.-..|+.+..++.+..+-|..++.+++..+---. .-..+...++.-+..+.+.+..+.++..+.++
T Consensus 36 ~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d~~~~E~~i~~i~d~ 106 (604)
T KOG3564|consen 36 DFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEADCEKLETQIQLIKDM 106 (604)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455556777777788888888888887776541111 22447888889999999999988888777664
No 132
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=27.33 E-value=2.5e+02 Score=20.42 Aligned_cols=54 Identities=7% Similarity=0.158 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy3215 37 YDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQ 94 (186)
Q Consensus 37 f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~ 94 (186)
+...+..+..=+...+..|......++ ..........+..++......+..+..
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t----~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPT----NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555554432211 123333344466666666666666655
No 133
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=26.87 E-value=2.3e+02 Score=19.92 Aligned_cols=91 Identities=15% Similarity=0.179 Sum_probs=59.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q psy3215 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHAD 81 (186)
Q Consensus 2 i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~e 81 (186)
|..+++.|...+..|..+=..|..+..+--.....=......+..=+.+....+....++.---+.-...+++++.+..+
T Consensus 25 v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~~~ 104 (126)
T PF09403_consen 25 VESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLLNK 104 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999988888877766665554455555555555555566665555555556667777777666555
Q ss_pred HH----hhHHHHHHH
Q psy3215 82 LH----QFKQQIVLF 92 (186)
Q Consensus 82 i~----~~~~~~~~l 92 (186)
|+ ..+..|..+
T Consensus 105 L~k~I~~~e~iI~~f 119 (126)
T PF09403_consen 105 LDKEIAEQEQIIDNF 119 (126)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 44 444444433
No 134
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=26.68 E-value=4.5e+02 Score=23.20 Aligned_cols=85 Identities=13% Similarity=0.225 Sum_probs=50.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhhccc--Cc----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 61 VGYTADVLEVQLREQKSIHADLHQFKQQIVLF-NQLTQKLISVYQH--DD----TTRVKKITEQVNQRYNNLNTSIINRG 133 (186)
Q Consensus 61 ~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l-~~~~~~L~~~~~~--~~----~~~i~~~l~~l~~rw~~L~~~~~~r~ 133 (186)
+..+.+.++.++.+.+....|.......+..- ......+...|.. -. ...|.+.+..|-..|..+...+
T Consensus 122 v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir~ELl~l~~~LP~~~~~i~~~i---- 197 (507)
T PF05600_consen 122 VNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIREELLELVKELPSLFDEIVEAI---- 197 (507)
T ss_pred hcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHhhHHHHHHHHHHH----
Confidence 33466778889888888888877666554322 2333333333311 12 2344444566666666666665
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3215 134 KALNSAMSSLQNFDKS 149 (186)
Q Consensus 134 ~~Le~~~~~~~~f~~~ 149 (186)
..|..++..+..|...
T Consensus 198 ~~l~~aie~Y~~f~~~ 213 (507)
T PF05600_consen 198 SDLQEAIEYYQAFVEF 213 (507)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5588888877777774
No 135
>PF11401 Tetrabrachion: Tetrabrachion; InterPro: IPR021535 Tetrabrachion forms a parallel right-handed coiled coil structure with hydrophobic interactions and salt bridges forming a thermostable tetrameric structure. It contains large hydrophobic cavities. No function is known for this family of proteins []. ; PDB: 1FE6_C 1YBK_A.
Probab=25.70 E-value=1.3e+02 Score=16.60 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=23.9
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 110 RVKKITEQ-VNQRYNNLNTSIINRGKALNSAMS 141 (186)
Q Consensus 110 ~i~~~l~~-l~~rw~~L~~~~~~r~~~Le~~~~ 141 (186)
.|--++.. +.+||+.|.+...-|..+|+..+.
T Consensus 8 divyrltviiddryeslknlitlradrlemiin 40 (49)
T PF11401_consen 8 DIVYRLTVIIDDRYESLKNLITLRADRLEMIIN 40 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEEEEccHHHHHHHHHhhhHhhhhhhhc
Confidence 34444433 678999999999999999987754
No 136
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=25.62 E-value=2.8e+02 Score=20.42 Aligned_cols=21 Identities=5% Similarity=0.314 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy3215 36 RYDAKRQEVDGWLTRMENRMQ 56 (186)
Q Consensus 36 ~f~~~~~~l~~WL~~~E~~l~ 56 (186)
.+..+++++..++...+..+.
T Consensus 92 ~l~~el~~l~~~~~~~~~~l~ 112 (191)
T PF04156_consen 92 QLQEELDQLQERIQELESELE 112 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444444
No 137
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=25.09 E-value=2.2e+02 Score=23.52 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhHHHHHhHhhhhHHHh
Q psy3215 146 FDKSIDNFLAWLSEAESTMECVEVET 171 (186)
Q Consensus 146 f~~~~~~l~~Wl~e~e~~L~~~~~~~ 171 (186)
+..++.....=|...+.+++.++...
T Consensus 131 LksdVSt~aL~ItdLe~RV~~LEs~~ 156 (326)
T PF04582_consen 131 LKSDVSTQALNITDLESRVKALESGS 156 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhhhhhhhcchHhhHHHHHHHHhcCC
Confidence 33344444444555555666555443
No 138
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=24.99 E-value=4e+02 Score=22.09 Aligned_cols=10 Identities=10% Similarity=0.072 Sum_probs=3.7
Q ss_pred HHHHHhHhhh
Q psy3215 157 LSEAESTMEC 166 (186)
Q Consensus 157 l~e~e~~L~~ 166 (186)
|.+....+..
T Consensus 77 Ik~r~~~l~D 86 (330)
T PF07851_consen 77 IKERRCQLFD 86 (330)
T ss_pred HHHHHhhHHH
Confidence 3333333333
No 139
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=24.99 E-value=2.7e+02 Score=20.18 Aligned_cols=36 Identities=25% Similarity=0.426 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 2 ILHKITKLREHWDE--TNNKVMARKTQLDSMLSDSQRYD 38 (186)
Q Consensus 2 i~~~l~~l~~~W~~--L~~~~~~r~~~L~~~l~~~~~f~ 38 (186)
+++||+.|...|++ |..-+..+-..|-.++.. +.|.
T Consensus 70 ~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~-~d~~ 107 (157)
T PF07304_consen 70 IEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQA-RDYD 107 (157)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHH-T-HH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHc-CCHH
Confidence 56788888888875 777778888888888755 3354
No 140
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=24.74 E-value=3.2e+02 Score=20.83 Aligned_cols=22 Identities=14% Similarity=0.332 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy3215 2 ILHKITKLREHWDETNNKVMAR 23 (186)
Q Consensus 2 i~~~l~~l~~~W~~L~~~~~~r 23 (186)
++..|+.|..+-..+...+..|
T Consensus 101 LkrELa~Le~~l~~~~~~~~~~ 122 (195)
T PF12761_consen 101 LKRELAELEEKLSKVEQAAESR 122 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4667777777777777777775
No 141
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=24.47 E-value=2.1e+02 Score=18.66 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 71 QLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSS 142 (186)
Q Consensus 71 ~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~ 142 (186)
.-.....|+..|..+-.......+....+.... .+...+...++....|-..|.....+-..+|..++..
T Consensus 13 L~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~--~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~ 82 (89)
T PF13747_consen 13 LEAAIDRLEKAVDRRLERDRKRDELEEEIQRLD--ADRSRLAQELDQAEARANRLEEANREVSRRLDSAIET 82 (89)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHH--hhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555554444444444444443222 2455666666666666666666666656666655544
No 142
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=24.16 E-value=3.7e+02 Score=21.35 Aligned_cols=95 Identities=17% Similarity=0.049 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHHHHHHhhH
Q psy3215 8 KLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNP-VGYTADVLEVQLREQKSIHADLHQFK 86 (186)
Q Consensus 8 ~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~-~~~d~~~l~~~l~~~k~l~~ei~~~~ 86 (186)
+|+.--..+.....-|..+|.+++.....|...++.-..=|...=..+..... .+.....+..-+.....+-..|..++
T Consensus 14 kLn~tL~ala~Al~GrG~~lg~~l~~l~~~l~~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~~~~ 93 (267)
T PF11887_consen 14 KLNATLSALATALDGRGEQLGETLDDLNTLLATLNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLVDQR 93 (267)
T ss_pred HHHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhH
Confidence 34445555566666666666666665555544443322222211111111110 11222345555555666666666666
Q ss_pred HHHHHHHHHHHHHHhh
Q psy3215 87 QQIVLFNQLTQKLISV 102 (186)
Q Consensus 87 ~~~~~l~~~~~~L~~~ 102 (186)
..+..+...+..+...
T Consensus 94 ~~L~~lL~~~~~~a~~ 109 (267)
T PF11887_consen 94 QQLDALLLSATGLADT 109 (267)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666665555555443
No 143
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=24.05 E-value=2.6e+02 Score=21.36 Aligned_cols=31 Identities=13% Similarity=0.273 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 19 KVMARKTQLDSMLSDSQRYDAKRQEVDGWLT 49 (186)
Q Consensus 19 ~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~ 49 (186)
.+..|+..|.+++.....++..++.+..=+.
T Consensus 112 lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~ 142 (200)
T PF07412_consen 112 LAEERRKALEEALEENEKLHKEIEQKDEEIA 142 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999988878777665554433
No 144
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=23.85 E-value=3.4e+02 Score=20.82 Aligned_cols=42 Identities=7% Similarity=0.202 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 109 TRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDN 152 (186)
Q Consensus 109 ~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~ 152 (186)
.....++.....+|+.+...+..=..+++.-. ...|...+..
T Consensus 159 ~~~e~~~~~a~~~fe~is~~~k~El~rF~~er--v~dfk~~l~~ 200 (224)
T cd07623 159 KEWEAKVDRGQKEFEEISKTIKKEIERFEKNR--VKDFKDIIIK 200 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 34456666777788888777776665555442 3445554443
No 145
>PF13675 PilJ: Type IV pili methyl-accepting chemotaxis transducer N-term; PDB: 3EZI_D 3EZH_B.
Probab=23.63 E-value=2.2e+02 Score=18.64 Aligned_cols=50 Identities=12% Similarity=0.254 Sum_probs=27.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 76 KSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIIN 131 (186)
Q Consensus 76 k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~ 131 (186)
..+...+..+...+..|..-+..+. ....|+..+..+...|..+...+..
T Consensus 46 ~~l~~~~~~f~~~l~~L~~~~~~~~------~~~~i~~~~~~v~~~W~~~~~~~~~ 95 (112)
T PF13675_consen 46 AELREAIAEFEQSLQALQNGDPSLG------PSPEIRAQLQQVEALWQELRPALQA 95 (112)
T ss_dssp HHHHHHHT------HHHHHHHHH----------TT-HHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccc------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555656666666655554444 2346888889999999888887755
No 146
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=23.33 E-value=4e+02 Score=21.53 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=33.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 106 DDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFL 154 (186)
Q Consensus 106 ~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~ 154 (186)
..+..|.+....+-.++..+......-++.|+.+...+.++...+....
T Consensus 233 ~na~~I~~~~~~l~~~~~~~~~~~~~l~k~l~~a~~~~~~~~~~~~~~~ 281 (304)
T PF02646_consen 233 KNAEEIAELAGKLYDRFGKFVEHLEKLGKSLDKAVKSYNKAVGSLEKRV 281 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788888888888888888887777777777666544444444433
No 147
>KOG4603|consensus
Probab=23.29 E-value=3.2e+02 Score=20.42 Aligned_cols=90 Identities=10% Similarity=0.260 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHH
Q psy3215 36 RYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKIT 115 (186)
Q Consensus 36 ~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l 115 (186)
.+...+..+..-...+|..+..... .-+.+.++..++ .|..++...+..+..+......+. +.+...
T Consensus 90 ~l~ek~q~l~~t~s~veaEik~L~s-~Lt~eemQe~i~---~L~kev~~~~erl~~~k~g~~~vt----pedk~~----- 156 (201)
T KOG4603|consen 90 ALTEKVQSLQQTCSYVEAEIKELSS-ALTTEEMQEEIQ---ELKKEVAGYRERLKNIKAGTNHVT----PEDKEQ----- 156 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHHHH---HHHHHHHHHHHHHHHHHHhcccCC----HHHHHH-----
Confidence 3555555666666666666665431 123444454444 477777778888877776554433 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 116 EQVNQRYNNLNTSIINRGKALNSAM 140 (186)
Q Consensus 116 ~~l~~rw~~L~~~~~~r~~~Le~~~ 140 (186)
+..-|..-|.....|.+-..+.+
T Consensus 157 --v~~~y~~~~~~wrk~krmf~ei~ 179 (201)
T KOG4603|consen 157 --VYREYQKYCKEWRKRKRMFREII 179 (201)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555444443
No 148
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=23.27 E-value=5.6e+02 Score=23.15 Aligned_cols=135 Identities=9% Similarity=0.181 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC----CCCCCHHHHHHHHHHHHH
Q psy3215 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMN----PVGYTADVLEVQLREQKS 77 (186)
Q Consensus 2 i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~----~~~~d~~~l~~~l~~~k~ 77 (186)
|.+++..+...-+.++..+..-..+|..+......+...+..+..=...++.+-.-.. ...-+++.+...-..-..
T Consensus 43 v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f~Ls~~E~~~L~~~~~~ 122 (618)
T PF06419_consen 43 VNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERFTLSEEEEDALTSGEEP 122 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCC
Confidence 4566777777777777777777777777777777777777777665555554322110 011122221111111113
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 78 IHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRV-KKITEQVNQRYNNLNTSIINRGKAL 136 (186)
Q Consensus 78 l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i-~~~l~~l~~rw~~L~~~~~~r~~~L 136 (186)
+-.+...-=.++..+.+.+..|+...+..-+-.| ...-..++.-|++|+..+..-.+.+
T Consensus 123 v~~~FF~~L~r~~~I~~~c~~LL~~~~~~ag~~iM~~~~~~~e~a~erl~~w~q~e~~~l 182 (618)
T PF06419_consen 123 VDDEFFDALDRVQKIHEDCKILLSTENQRAGLEIMEQMSKYLERAYERLYRWVQRECRSL 182 (618)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3334444445566667777777655433223333 3333446677777777776655555
No 149
>PLN02943 aminoacyl-tRNA ligase
Probab=23.20 E-value=5.3e+02 Score=24.75 Aligned_cols=59 Identities=10% Similarity=0.157 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCC-CHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy3215 35 QRYDAKRQEVDGWLTRMENRMQRMNPVGY-TADVLEVQLREQKSIHADLHQFKQQIVLFN 93 (186)
Q Consensus 35 ~~f~~~~~~l~~WL~~~E~~l~~~~~~~~-d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~ 93 (186)
.+..+.++.++.-+...+.+|++...+.. .++.++....+...++.++......+..+.
T Consensus 892 ~rL~K~l~klekei~~~~~kLsN~~F~~KAP~evv~~e~~kl~~~~~~l~~~~~~l~~l~ 951 (958)
T PLN02943 892 ERLSKRLSKMQTEYDALAARLSSPKFVEKAPEDVVRGVREKAAEAEEKIKLTKNRLAFLK 951 (958)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677888888888889999988776554 456678888888888888888877776665
No 150
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.03 E-value=5.7e+02 Score=23.13 Aligned_cols=84 Identities=7% Similarity=0.152 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHH
Q psy3215 8 KLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQ 87 (186)
Q Consensus 8 ~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~ 87 (186)
.+..+.+.+.....+-..+++.....+..+...++.+..=+...+..+...+ ++. +.+-..++.++.....
T Consensus 206 ~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~G---G~~------~~~r~~Le~ei~~le~ 276 (650)
T TIGR03185 206 SILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEG---GDL------FEEREQLERQLKEIEA 276 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---chH------HHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666677777777777777777766532 322 2223344555555555
Q ss_pred HHHHHHHHHHHHH
Q psy3215 88 QIVLFNQLTQKLI 100 (186)
Q Consensus 88 ~~~~l~~~~~~L~ 100 (186)
...........+.
T Consensus 277 e~~e~~~~l~~l~ 289 (650)
T TIGR03185 277 ARKANRAQLRELA 289 (650)
T ss_pred HHHHHHHHHHHHh
Confidence 5555544444444
No 151
>COG3418 Flagellar biosynthesis/type III secretory pathway chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=22.66 E-value=3e+02 Score=19.82 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy3215 113 KITEQVNQRYNNLNTSIINRG-KALNSAM 140 (186)
Q Consensus 113 ~~l~~l~~rw~~L~~~~~~r~-~~Le~~~ 140 (186)
+....++.||+.+...+..-+ .-|...+
T Consensus 75 e~~~~L~erwq~i~~~~~~lrq~NL~NG~ 103 (146)
T COG3418 75 ESNNDLNERWQEIIELTERLRQANLHNGW 103 (146)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 366789999999988876632 3344444
No 152
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=22.63 E-value=1.8e+02 Score=17.23 Aligned_cols=40 Identities=10% Similarity=0.278 Sum_probs=22.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHH
Q psy3215 80 ADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLN 126 (186)
Q Consensus 80 ~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~ 126 (186)
++|.+....+..+... .++++...|...++.+..||.-.+
T Consensus 8 ~~i~a~~e~l~~~~~~-------lt~e~~~~l~~~~~al~~~~~~~~ 47 (64)
T PF12644_consen 8 DEIMATKEELEELEER-------LTKEDKKRLEEYIDALGARWGLES 47 (64)
T ss_pred HHHHHHHHHHHHHHhh-------cCHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444444444444333 223456778888888888885443
No 153
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=22.62 E-value=4.5e+02 Score=21.81 Aligned_cols=59 Identities=10% Similarity=0.191 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy3215 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNP 60 (186)
Q Consensus 2 i~~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~ 60 (186)
|.+...+|.+.+.+|.+....-.+++++....+...-+.+..-..=|.+.-..+....+
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~ 60 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKK 60 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56778889999999999999999999988887777777777666667777777776653
No 154
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=22.46 E-value=1.8e+02 Score=17.18 Aligned_cols=18 Identities=11% Similarity=0.514 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy3215 111 VKKITEQVNQRYNNLNTS 128 (186)
Q Consensus 111 i~~~l~~l~~rw~~L~~~ 128 (186)
+..-+.++..|++.+...
T Consensus 8 v~~lL~qmq~kFq~mS~~ 25 (54)
T PF06825_consen 8 VQNLLQQMQDKFQTMSDQ 25 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444443
No 155
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=22.24 E-value=1.8e+02 Score=17.80 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=18.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q psy3215 1 MILHKITKLREHWDETNNKVMAR 23 (186)
Q Consensus 1 ~i~~~l~~l~~~W~~L~~~~~~r 23 (186)
.|.+++..|-..|.+++..+..+
T Consensus 27 PlGqkIa~l~kdw~~~~~~~r~K 49 (64)
T PF05596_consen 27 PLGQKIAQLAKDWNEICQEVRKK 49 (64)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 37788999999999988877654
No 156
>KOG4673|consensus
Probab=22.24 E-value=6.4e+02 Score=23.45 Aligned_cols=61 Identities=7% Similarity=0.177 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCch------hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 74 EQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDT------TRVKKITEQVNQRYNNLNTSIINRGK 134 (186)
Q Consensus 74 ~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~------~~i~~~l~~l~~rw~~L~~~~~~r~~ 134 (186)
+-.-|..||...+..+..-...+..|+...+.-.. ..++..++.-...|+.+...+.+|..
T Consensus 606 rEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~ 672 (961)
T KOG4673|consen 606 REDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEALQETLSKAATAWEREERSLNERLS 672 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Confidence 34457778888888888888888888877754222 45566666677788887666666554
No 157
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=22.19 E-value=2.4e+02 Score=18.60 Aligned_cols=55 Identities=16% Similarity=0.305 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhh
Q psy3215 108 TTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMEC 166 (186)
Q Consensus 108 ~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e~~L~~ 166 (186)
+..|...+..++.++..|.. ...+|...-.....|...+..|..|..+.|..+..
T Consensus 44 ~~~l~~~~~~l~~k~~~l~~----~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k~k~ 98 (99)
T PF10046_consen 44 AAGLEKNLEDLNQKYEELQP----YLQQIDQIEEQVTELEQTVYELDEYSKELESKFKK 98 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45677777777777766543 33345554445566788888899999888887764
No 158
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=22.06 E-value=6.2e+02 Score=23.21 Aligned_cols=54 Identities=7% Similarity=0.166 Sum_probs=46.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy3215 107 DTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEA 160 (186)
Q Consensus 107 ~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~ 160 (186)
....+..++..++.+-+.+..++..+..+|..-+..+......+.....||...
T Consensus 601 r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QFtaME~~msqmnsqss~L~~~ 654 (661)
T PRK06664 601 KVKGLDERIADNNKKIEEYEKKLESKERKLKGKYLTMDQTVKKMKEQSNYLKNF 654 (661)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888899999999999999999998888888888888888888888764
No 159
>KOG4302|consensus
Probab=21.60 E-value=6.4e+02 Score=23.18 Aligned_cols=140 Identities=16% Similarity=0.203 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHhhccCCCCC----C
Q psy3215 4 HKITKLREHWDETNNKVMARKTQLDSMLSD---------------SQRYDAKRQEVDGWLTRMENRMQRMNPVGY----T 64 (186)
Q Consensus 4 ~~l~~l~~~W~~L~~~~~~r~~~L~~~l~~---------------~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~----d 64 (186)
.-+..|+.-|+.+..--.+|-+.|...-.. ......++....+=+.+.-..|.....++. -
T Consensus 18 ~~~~eL~~IW~~igE~~~e~d~~l~~le~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~ 97 (660)
T KOG4302|consen 18 NLLNELQKIWDEIGESETERDKKLLRLEQECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKI 97 (660)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccccccc
Confidence 346678888998888888877655443322 222333333344444444444433322222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHhhc-cc---------CchhHHHHHHHHHHHHHHHHHHHHH
Q psy3215 65 ADVLEVQLREQKSIHADLHQFK----QQIVLFNQLTQKLISVY-QH---------DDTTRVKKITEQVNQRYNNLNTSII 130 (186)
Q Consensus 65 ~~~l~~~l~~~k~l~~ei~~~~----~~~~~l~~~~~~L~~~~-~~---------~~~~~i~~~l~~l~~rw~~L~~~~~ 130 (186)
..++..++....-...+|.... ..+..+...-+.|+..- .+ +.....-.+++.+..+-..|...-.
T Consensus 98 e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qie~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~ 177 (660)
T KOG4302|consen 98 EGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQIEKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKS 177 (660)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHH
Confidence 2346666666665555554332 22222322223332211 11 1223344788888888877777777
Q ss_pred HHHHHHHHHHHHH
Q psy3215 131 NRGKALNSAMSSL 143 (186)
Q Consensus 131 ~r~~~Le~~~~~~ 143 (186)
.|.++........
T Consensus 178 ~Rlekv~~~~~~I 190 (660)
T KOG4302|consen 178 DRLEKVLELKEEI 190 (660)
T ss_pred HHHHHHHHHHHHH
Confidence 7776665554443
No 160
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=21.57 E-value=2.6e+02 Score=23.11 Aligned_cols=70 Identities=9% Similarity=0.195 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy3215 21 MARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKL 99 (186)
Q Consensus 21 ~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L 99 (186)
.+|...|+.+..- +...+..+..=+.+++..|.... ..+..+... ...+...|..++..+..+......|
T Consensus 34 ~eRLsaLEssv~s---L~~SVs~lss~iSdLss~L~~l~---~sl~~~~s~---L~sLsstV~~lq~Sl~~lsssVs~l 103 (326)
T PF04582_consen 34 RERLSALESSVAS---LSDSVSSLSSTISDLSSDLQDLA---SSLADMTSE---LNSLSSTVTSLQSSLSSLSSSVSSL 103 (326)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 4444555555432 44455555555555555554322 222222222 2224444555555554444443333
No 161
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=21.40 E-value=3.3e+02 Score=21.58 Aligned_cols=64 Identities=13% Similarity=0.244 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q psy3215 17 NNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHAD 81 (186)
Q Consensus 17 ~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~~~~~~~d~~~l~~~l~~~k~l~~e 81 (186)
...+.-|+.-+..-....+.|..++...-..|..+|..+-... .+.|....++.+++++.+..+
T Consensus 79 EkEvdvRkr~~r~Fnk~~~eF~gdl~~YNdYLEevE~l~f~l~-~~idv~~teEKvk~yee~n~d 142 (314)
T COG5220 79 EKEVDVRKRLLRAFNKEEEEFGGDLAKYNDYLEEVEELVFELL-ELIDVSLTEEKVKKYEEMNQD 142 (314)
T ss_pred hhhhhHHHHHHHHhccchhhhCccHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhhHH
Confidence 3445556555555555667788888888899999998766553 456777778887777766554
No 162
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=21.22 E-value=3.1e+02 Score=19.39 Aligned_cols=95 Identities=9% Similarity=0.090 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 66 DVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQN 145 (186)
Q Consensus 66 ~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~ 145 (186)
-+.+....+.+.=.+++..+...+..+.+....|... ......++..+..+...|..++-.-..+++-.-.....
T Consensus 30 ~GF~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~-----~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~ 104 (141)
T PF13874_consen 30 IGFEDLKKRVEAQEEEIAQHRERLKEINDKLEELQKH-----DLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYA 104 (141)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3456666777777788888888888888887777322 23566677777777777777666655555533322223
Q ss_pred HHHHHHHHHHhHHHHHhHhh
Q psy3215 146 FDKSIDNFLAWLSEAESTME 165 (186)
Q Consensus 146 f~~~~~~l~~Wl~e~e~~L~ 165 (186)
+..+=+.+..=+...+..|+
T Consensus 105 l~~eEe~L~~~le~l~~~l~ 124 (141)
T PF13874_consen 105 LSPEEEELRKRLEALEAQLN 124 (141)
T ss_dssp --------------------
T ss_pred CCHHHHHHHHHHHHHHHHHc
Confidence 43444444444444444443
No 163
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=21.01 E-value=4.2e+02 Score=20.90 Aligned_cols=75 Identities=16% Similarity=0.268 Sum_probs=44.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 63 YTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSS 142 (186)
Q Consensus 63 ~d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~~~~~~L~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~ 142 (186)
+..+.+...+.....+-..+....+.+..+......+...-. .....|..-+..++. +...+......|..++..
T Consensus 164 ~~~~~l~~~l~~l~~l~~~l~~~~~~i~~ll~~l~~l~~~l~-~~~~~l~~~v~~l~~----~~~~l~~~~~~l~~~l~~ 238 (291)
T TIGR00996 164 GQGPQLRNLLDGLAQLTAALNARDGDIGALIDNLNRVLDVLA-DRSDQLDRLLDNLAT----LTAQLADRDDALDDALAA 238 (291)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHH----HHHHHHhChHHHHHHHHH
Confidence 344567778888888888888888888888777777665542 233444444444333 333333344444444433
No 164
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=20.77 E-value=3.7e+02 Score=20.10 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHhHhhhh
Q psy3215 108 TTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQ-NFDKSIDNFLAWLSEAESTMECV 167 (186)
Q Consensus 108 ~~~i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~-~f~~~~~~l~~Wl~e~e~~L~~~ 167 (186)
.....=.+.+-..||..|..........|.+.-..++ ++......| .=|.++|+.|++-
T Consensus 107 ~Q~lql~L~eEr~Ry~rLQqssD~~lD~Lr~qq~~Lq~qL~~T~RKL-EnLTDIERQLSSR 166 (179)
T PF13942_consen 107 QQVLQLQLSEERARYQRLQQSSDSELDALRQQQQRLQYQLDTTTRKL-ENLTDIERQLSSR 166 (179)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHhcc
Confidence 4556677888899999999999998888777654433 222223332 2356778887763
No 165
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=20.75 E-value=3.2e+02 Score=19.32 Aligned_cols=43 Identities=9% Similarity=0.123 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy3215 12 HWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQR 57 (186)
Q Consensus 12 ~W~~L~~~~~~r~~~L~~~l~~~~~f~~~~~~l~~WL~~~E~~l~~ 57 (186)
-|.-+.....+|...+.+.+.....+. .+...+..+.+..+..
T Consensus 28 l~kPi~~~l~~R~~~I~~~l~~A~~~~---~ea~~~~~e~e~~l~~ 70 (141)
T PRK08476 28 LYKPLLKFMDNRNASIKNDLEKVKTNS---SDVSEIEHEIETILKN 70 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 588999999999999999998877665 4455556666666653
No 166
>PRK06008 flgL flagellar hook-associated protein FlgL; Validated
Probab=20.54 E-value=4.6e+02 Score=21.56 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhhhHHHh
Q psy3215 132 RGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEVET 171 (186)
Q Consensus 132 r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e~~L~~~~~~~ 171 (186)
+.-.|+..+....+|.........||...+..|..+.+..
T Consensus 51 ~~~~l~~~~~~~~qy~~n~~~a~~~l~~~~~aL~~v~~~~ 90 (348)
T PRK06008 51 RSVSLRREYDRLASLTDSNSLVTQRLTATQTALGQIIEAA 90 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344666666667777777777777777777777765544
No 167
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=20.50 E-value=7.1e+02 Score=23.98 Aligned_cols=59 Identities=14% Similarity=0.175 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCC-CHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy3215 35 QRYDAKRQEVDGWLTRMENRMQRMNPVGY-TADVLEVQLREQKSIHADLHQFKQQIVLFN 93 (186)
Q Consensus 35 ~~f~~~~~~l~~WL~~~E~~l~~~~~~~~-d~~~l~~~l~~~k~l~~ei~~~~~~~~~l~ 93 (186)
.+..+.++.+..-+...+.+|++...+.. .++.++....++..++.++......+..+.
T Consensus 932 ~rL~K~l~kl~~ei~~~~~kL~N~~F~~kAp~~vve~e~~kl~~~~~~l~~l~~~l~~l~ 991 (995)
T PTZ00419 932 AKLEKKLAKLQKSLESYLKKISIPNYEDKVPEDVRKLNDEKIDELNEEIKQLEQAIEELK 991 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777788888888888765543 456677888888888888887777776665
No 168
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=20.31 E-value=6.1e+02 Score=22.49 Aligned_cols=26 Identities=15% Similarity=0.308 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 7 TKLREHWDETNNKVMARKTQLDSMLS 32 (186)
Q Consensus 7 ~~l~~~W~~L~~~~~~r~~~L~~~l~ 32 (186)
..+..+|..|.....+|-..|.....
T Consensus 225 eElE~rW~~lq~l~Ee~l~al~gq~e 250 (531)
T PF15450_consen 225 EELESRWQKLQELTEERLRALQGQQE 250 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 56778999988888888777766554
No 169
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=20.19 E-value=5e+02 Score=21.44 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3215 5 KITKLREHWDETNNKVMARKTQLDSML 31 (186)
Q Consensus 5 ~l~~l~~~W~~L~~~~~~r~~~L~~~l 31 (186)
++..+-..|-.+...+.+-...+..+.
T Consensus 180 ~~~~l~~a~~~yq~a~~ey~~~~~~~~ 206 (320)
T TIGR01834 180 QLQRLFRDWMEYQQAMADYQLLEADIG 206 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 170
>PRK10722 hypothetical protein; Provisional
Probab=20.04 E-value=4.5e+02 Score=20.81 Aligned_cols=58 Identities=21% Similarity=0.163 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHhhhhH
Q psy3215 111 VKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVE 168 (186)
Q Consensus 111 i~~~l~~l~~rw~~L~~~~~~r~~~Le~~~~~~~~f~~~~~~l~~Wl~e~e~~L~~~~ 168 (186)
..=.+..-..||..|.........+|.+-...++.=......=..=|.++|+.|++-.
T Consensus 156 l~l~LaeEr~Ry~rLQq~sD~qlD~lrqq~~~Lq~~L~~t~rKLEnLTdIERqLSsRk 213 (247)
T PRK10722 156 LQLALAEERQRYQKLQQSSDSELDALRQQQQRLQYQLELTTRKLENLTDIERQLSSRK 213 (247)
T ss_pred HHHhHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4445567788999998887776666666655444222222222334567888887643
Done!