RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3215
(186 letters)
>1u4q_A Spectrin alpha chain, brain; alpha spectrin, three repeats of
spectrin, alpha-helical linker region, 3-helix
coiled-coil, structural protein; 2.50A {Gallus gallus}
SCOP: a.7.1.1 a.7.1.1 a.7.1.1
Length = 322
Score = 74.9 bits (184), Expect = 1e-16
Identities = 28/143 (19%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 30 MLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQI 89
M + Q ++ ++ D WL+ +E + + G + L++ + + AD+ + ++
Sbjct: 1 MANKQQNFNTGIKDFDFWLSEVEALLASED-YGKDLASVNNLLKKHQLLEADISAHEDRL 59
Query: 90 VLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKS 149
N L++ DT++VK E +N R+ + + R LN + L F +
Sbjct: 60 KDLNSQADSLMTS-SAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESH-RLHQFFRD 117
Query: 150 IDNFLAWLSEAESTMECVEVETD 172
+D+ +W+ E + + + D
Sbjct: 118 MDDEESWIKEKKLLVSSEDYGRD 140
Score = 62.2 bits (151), Expect = 4e-12
Identities = 24/174 (13%), Positives = 60/174 (34%), Gaps = 4/174 (2%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV 61
+ K + + + AR+ +L+ Q + + + W+ + +
Sbjct: 80 VKDKRETINGRFQRIKSMAAARRAKLNESHRLHQ-FFRDMDDEESWIKEKKLLVSSE-DY 137
Query: 62 GYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQR 121
G ++ ++ K + A+L + I +KL +++ Q
Sbjct: 138 GRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSD-DNTIGKEEIQQRLAQFVDH 196
Query: 122 YNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEVETDRQA 175
+ L RG+ L ++ Q F +++ AW++E + + + A
Sbjct: 197 WKELKQLAAARGQRLEESL-EYQQFVANVEEEEAWINEKMTLVASEDYGDTLAA 249
Score = 60.7 bits (147), Expect = 2e-11
Identities = 22/140 (15%), Positives = 54/140 (38%), Gaps = 3/140 (2%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV 61
I ++ + +HW E AR +L+ L + Q++ A +E + W+ +
Sbjct: 186 IQQRLAQFVDHWKELKQLAAARGQRLEESL-EYQQFVANVEEEEAWINEKMTLVASE-DY 243
Query: 62 GYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQR 121
G T ++ L++ ++ D K ++ + LI + + + + +
Sbjct: 244 GDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIK-KNNHHVENITAKMKGLKGK 302
Query: 122 YNNLNTSIINRGKALNSAMS 141
++L + R L+ +
Sbjct: 303 VSDLEKAAAQRKAKLDENSA 322
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil,
contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1
a.7.1.1
Length = 250
Score = 72.8 bits (178), Expect = 4e-16
Identities = 23/145 (15%), Positives = 58/145 (40%), Gaps = 4/145 (2%)
Query: 21 MARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHA 80
+ R +L+ + +++ K + W E + + + + + LR+ ++ +
Sbjct: 6 IRRLERLEHLA---EKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFES 62
Query: 81 DLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAM 140
DL + ++ + Q+L + + D V +++ +++ L T R +AL
Sbjct: 63 DLAAHQDRVEQIAAIAQELNEL-DYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERME 121
Query: 141 SSLQNFDKSIDNFLAWLSEAESTME 165
L+ D+ F + + ME
Sbjct: 122 KLLETIDQLHLEFAKRAAPFNNWME 146
Score = 51.2 bits (122), Expect = 2e-08
Identities = 16/160 (10%), Positives = 54/160 (33%), Gaps = 14/160 (8%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYD-------AKRQEVDGWLTRMENR 54
+ + K+ + WD R+ L+ M + D + + W+
Sbjct: 92 VNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMED 151
Query: 55 MQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQ------HDDT 108
+Q M + ++ + ++ + + A L + + + ++ V Q
Sbjct: 152 LQDM-FIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSN 210
Query: 109 TRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDK 148
+++ +++ + + R ++L ++ ++
Sbjct: 211 PYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANER 250
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin
capping, actin-binding, alternative splicing,
calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Length = 323
Score = 71.5 bits (175), Expect = 2e-15
Identities = 26/172 (15%), Positives = 60/172 (34%), Gaps = 4/172 (2%)
Query: 1 MILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNP 60
I L E W + + R L + + ++ +E+ G + ++
Sbjct: 83 TIAEWKDGLNEAWADLLELIDTRTQILAASY-ELHKFYHDAKEIFGRIQDKHKKLP--EE 139
Query: 61 VGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQ 120
+G + +E R + D+ Q+ + +L + Y D ++K +V +
Sbjct: 140 LGRDQNTVETLQRMHTTFEHDIQALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLE 199
Query: 121 RYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEVETD 172
+ +L + +R L F + + + W+ + +E E D
Sbjct: 200 AWKSLLDACESRRVRLVDTG-DKFRFFSMVRDLMLWMEDVIRQIEAQEKPRD 250
Score = 56.5 bits (136), Expect = 4e-10
Identities = 19/132 (14%), Positives = 49/132 (37%), Gaps = 4/132 (3%)
Query: 35 QRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIV-LFN 93
+ + + +++ W+ E + + +G + + + + D Q+ V N
Sbjct: 9 FQLNREVDDLEQWIAERE-VVAGSHELGQDYEHVTMLQERFREFARDTGNIGQERVDTVN 67
Query: 94 QLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNF 153
L +LI+ H D + + + +N+ + +L I R + L ++ L F
Sbjct: 68 HLADELIN-SGHSDAATIAEWKDGLNEAWADLLELIDTRTQILAASY-ELHKFYHDAKEI 125
Query: 154 LAWLSEAESTME 165
+ + +
Sbjct: 126 FGRIQDKHKKLP 137
Score = 53.8 bits (129), Expect = 4e-09
Identities = 18/135 (13%), Positives = 55/135 (40%), Gaps = 3/135 (2%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV 61
I + ++ E W + +R+ +L D R+ + +++ W+ + +++
Sbjct: 190 IQKRENEVLEAWKSLLDACESRRVRLVDTG-DKFRFFSMVRDLMLWMEDVIRQIEAQEKP 248
Query: 62 GYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQR 121
+E+ + + I A++ +L + L++ +H + +K+ Q+ ++
Sbjct: 249 R-DVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSLLA-RKHYASEEIKEKLLQLTEK 306
Query: 122 YNNLNTSIINRGKAL 136
+ +R + L
Sbjct: 307 RKEMIDKWEDRWEWL 321
>1u5p_A Spectrin alpha chain, brain; alpha spectrin, two repeats of
spectrin, alpha-helical linker region, 3-helix coiled
coil, structural protein; 2.00A {Gallus gallus} SCOP:
a.7.1.1 a.7.1.1
Length = 216
Score = 68.0 bits (166), Expect = 1e-14
Identities = 28/146 (19%), Positives = 62/146 (42%), Gaps = 3/146 (2%)
Query: 30 MLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQI 89
M + Q ++ ++ D WL+ +E + G + L++ + + AD+ + ++
Sbjct: 1 MANKQQNFNTGIKDFDFWLSEVEALLASE-DYGKDLASVNNLLKKHQLLEADISAHEDRL 59
Query: 90 VLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKS 149
N L++ DT++VK E +N R+ + + R LN + L F +
Sbjct: 60 KDLNSQADSLMTS-SAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESH-RLHQFFRD 117
Query: 150 IDNFLAWLSEAESTMECVEVETDRQA 175
+D+ +W+ E + + + D
Sbjct: 118 MDDEESWIKEKKLLVSSEDYGRDLTG 143
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex,
spectrin, spectrin repeat, three helix bundle, ANKY
binding, disease mutation, structural protein, ZU5
sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Length = 326
Score = 65.4 bits (159), Expect = 4e-13
Identities = 27/178 (15%), Positives = 66/178 (37%), Gaps = 5/178 (2%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV 61
I+ ++ +H+ + RK +L++M Q + +++ W++ E +
Sbjct: 81 IIRLQGQVDKHYAGLKDVAEERKRKLENMYHLFQ-LKRETDDLEQWISEKELVASSP-EM 138
Query: 62 GYTADVLEVQLREQKSIHADLHQFKQQIV-LFNQLTQKLISVYQHDDTTRVKKITEQVNQ 120
G D + + + + + Q+ V N ++LI H + + + + +N+
Sbjct: 139 GQDFDHVTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAG-HSEAATIAEWKDGLNE 197
Query: 121 RYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEVETDRQAEKQ 178
+ +L I R + L ++ L + + L + E + AE
Sbjct: 198 MWADLLELIDTRMQLLAASY-DLHRYFYTGAEILGLIDEKHRELPEDVGLDASTAESF 254
Score = 62.7 bits (152), Expect = 3e-12
Identities = 26/144 (18%), Positives = 50/144 (34%), Gaps = 3/144 (2%)
Query: 35 QRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQ 94
Q+Y E + W+ E + + + V L+ + + + I
Sbjct: 7 QQYYLDADEAEAWIGEQELYVISDE-IPKDEEGAIVMLKRHLRQQRAVEDYGRNIKQLAS 65
Query: 95 LTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFL 154
Q L+S H + ++ ++ QV++ Y L R + L + L + D+
Sbjct: 66 RAQGLLSA-GHPEGEQIIRLQGQVDKHYAGLKDVAEERKRKLENMYH-LFQLKRETDDLE 123
Query: 155 AWLSEAESTMECVEVETDRQAEKQ 178
W+SE E E+ D
Sbjct: 124 QWISEKELVASSPEMGQDFDHVTL 147
Score = 57.7 bits (139), Expect = 2e-10
Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 3/138 (2%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV 61
I L E W + + R L + D RY E+ G + + V
Sbjct: 188 IAEWKDGLNEMWADLLELIDTRMQLLAASY-DLHRYFYTGAEILGLIDEKHRELP--EDV 244
Query: 62 GYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQR 121
G A E R + D+H Q+ F + +L + Y + ++ ++V+
Sbjct: 245 GLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAA 304
Query: 122 YNNLNTSIINRGKALNSA 139
+ L + R L
Sbjct: 305 WQALLDACAGRRTQLVDT 322
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin,
ankyrin-binding domain, actin capping, AC binding,
cytoskeleton, disease mutation; 2.10A {Homo sapiens}
PDB: 3f57_A
Length = 218
Score = 64.3 bits (156), Expect = 4e-13
Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 3/143 (2%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV 61
I L E W + + R L + D RY E+ G + + V
Sbjct: 79 IAEWKDGLNEMWADLLELIDTRMQLLAASY-DLHRYFYTGAEILGLIDEKHRELP--EDV 135
Query: 62 GYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQR 121
G A E R + +LH Q+ F + +L + Y + ++ ++V+
Sbjct: 136 GLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQTAYAGEKAEAIQNKEQEVSAA 195
Query: 122 YNNLNTSIINRGKALNSAMSSLQ 144
+ L + R L +
Sbjct: 196 WQALLDACAGRRTQLVDTADKFR 218
Score = 50.4 bits (120), Expect = 4e-08
Identities = 18/131 (13%), Positives = 50/131 (38%), Gaps = 4/131 (3%)
Query: 35 QRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVL-FN 93
+ + +++ W++ E + +G D + + + + + Q+ V N
Sbjct: 4 FQLKRETDDLEQWISEKE-LVASSPEMGQDFDHVTLLRDKFRDFARETGAIGQERVDNVN 62
Query: 94 QLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNF 153
++LI H + + + + +N+ + +L I R + L ++ L + +
Sbjct: 63 AFIERLID-AGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASY-DLHRYFYTGAEI 120
Query: 154 LAWLSEAESTM 164
L + E +
Sbjct: 121 LGLIDEKHREL 131
Score = 26.1 bits (57), Expect = 6.4
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 141 SSLQNFDKSIDNFLAWLSEAESTMECVEVETD 172
SL + D+ W+SE E E+ D
Sbjct: 1 GSLFQLKRETDDLEQWISEKELVASSPEMGQD 32
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 63.8 bits (155), Expect = 5e-13
Identities = 27/144 (18%), Positives = 57/144 (39%), Gaps = 9/144 (6%)
Query: 19 KVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSI 78
K + + + LD L++ + Q++ W+ M+ ++ R G +E L K++
Sbjct: 7 KPLLKSSLLDQNLTEEEVNMKFVQDLLNWVDEMQVQLDRT-EWGSDLPSVESHLENHKNV 65
Query: 79 HADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNS 138
H + +F+ + ++ ++ +Y L + N+ + L+
Sbjct: 66 HRAIEEFESSLKEAKISEIQM----TAPLKLSYTDKLHRLESQYAKLLNTSRNQERHLD- 120
Query: 139 AMSSLQNFDKSIDNFLAWLSEAES 162
+L NF N L WL+E E
Sbjct: 121 ---TLHNFVTRATNELIWLNEKEE 141
Score = 35.3 bits (81), Expect = 0.006
Identities = 13/135 (9%), Positives = 44/135 (32%), Gaps = 6/135 (4%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV 61
K+ +L + + N ++ LD++ + + WL E +
Sbjct: 94 YTDKLHRLESQYAKLLNTSRNQERHLDTL----HNFVTRATNELIWLNEKEESEVAYD-W 148
Query: 62 GYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQR 121
+ + + +L Q ++ I ++ ++L+ H ++ + +
Sbjct: 149 SERNSSVARKKSYHAELMRELEQKEESIKAVQEIAEQLLLE-NHPARLTIEAYRAAMQTQ 207
Query: 122 YNNLNTSIINRGKAL 136
++ + + +
Sbjct: 208 WSWILQLCQCVEQHI 222
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of
spectrin, alpha helical linker region, 3- helix
coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP:
a.7.1.1 a.7.1.1
Length = 214
Score = 60.3 bits (146), Expect = 8e-12
Identities = 22/141 (15%), Positives = 49/141 (34%), Gaps = 2/141 (1%)
Query: 35 QRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQ 94
Q + + WL+ + + + + E L++ I ++ + +
Sbjct: 3 QAFLQDLDDFQAWLSITQKAVASEDMPE-SLPEAEQLLQQHAGIKDEIDGHQDSYQRVKE 61
Query: 95 LTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFL 154
+K+I + + + E ++ ++ L +R L + Q F K
Sbjct: 62 SGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCLG-FQEFQKDAKQAE 120
Query: 155 AWLSEAESTMECVEVETDRQA 175
A LS E T+ +E +A
Sbjct: 121 AILSNQEYTLAHLEPPDSLEA 141
Score = 58.0 bits (140), Expect = 7e-11
Identities = 17/139 (12%), Positives = 49/139 (35%), Gaps = 3/139 (2%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV 61
+ ++ L WD +R L L Q + ++ + L+ E + +
Sbjct: 78 LGQRLEGLDTGWDALGRMWESRSHTLAQCL-GFQEFQKDAKQAEAILSNQEYTLAHLE-P 135
Query: 62 GYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQR 121
+ + E +R+ + + + +++ KL++ + + ++K+ + + R
Sbjct: 136 PDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVDSGNKLVAE-GNLYSDKIKEKVQLIEDR 194
Query: 122 YNNLNTSIINRGKALNSAM 140
+ N L +
Sbjct: 195 HRKNNEKAQEASVLLRDNL 213
>1cun_A Protein (alpha spectrin); two repeats of spectrin, alpha helical
linker region, 2 tandem 3-helix coiled- coils,
structural protein; 2.00A {Gallus gallus} SCOP: a.7.1.1
a.7.1.1 PDB: 1aj3_A
Length = 213
Score = 59.2 bits (143), Expect = 2e-11
Identities = 22/140 (15%), Positives = 54/140 (38%), Gaps = 3/140 (2%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV 61
I ++ + +HW E AR +L+ L + Q++ A +E + W+ +
Sbjct: 77 IQQRLAQFVDHWKELKQLAAARGQRLEESL-EYQQFVANVEEEEAWINEKMTLVASE-DY 134
Query: 62 GYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQR 121
G T ++ L++ ++ D K ++ + LI + + + + +
Sbjct: 135 GDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIKK-NNHHVENITAKMKGLKGK 193
Query: 122 YNNLNTSIINRGKALNSAMS 141
++L + R L+ +
Sbjct: 194 VSDLEKAAAQRKAKLDENSA 213
Score = 52.6 bits (126), Expect = 6e-09
Identities = 19/141 (13%), Positives = 49/141 (34%), Gaps = 3/141 (2%)
Query: 35 QRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQ 94
++ + + W+ + + G ++ ++ K + A+L + I
Sbjct: 3 HQFFRDMDDEESWIKEKKLLVS-SEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQSVLD 61
Query: 95 LTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFL 154
+KL +++ Q + L RG+ L ++ Q F +++
Sbjct: 62 TGKKLSDD-NTIGKEEIQQRLAQFVDHWKELKQLAAARGQRLEESLE-YQQFVANVEEEE 119
Query: 155 AWLSEAESTMECVEVETDRQA 175
AW++E + + + A
Sbjct: 120 AWINEKMTLVASEDYGDTLAA 140
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 57.2 bits (138), Expect = 1e-10
Identities = 21/149 (14%), Positives = 55/149 (36%), Gaps = 4/149 (2%)
Query: 21 MARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHA 80
D QR+ + +++ W+ + + + + E L +
Sbjct: 3 HHHHHHSHDSH-DLQRFLSDFRDLMSWINGIRGLVSS-DELAKDVTGAEALLERHQEHRT 60
Query: 81 DLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAM 140
++ F Q Q+L++ H + +K+ + ++Q +L + + R L+ +
Sbjct: 61 EIDARAGTFQAFEQFGQQLLAH-GHYASPEIKQKLDILDQERADLEKAWVQRRMMLDQCL 119
Query: 141 SSLQNFDKSIDNFLAWLSEAESTMECVEV 169
LQ F + + W++ E+ + +
Sbjct: 120 E-LQLFHRDCEQAENWMAAREAFLNTEDK 147
Score = 55.3 bits (133), Expect = 7e-10
Identities = 21/131 (16%), Positives = 51/131 (38%), Gaps = 3/131 (2%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV 61
I K+ L + + + R+ LD L + Q + ++ + W+ E +
Sbjct: 90 IKQKLDILDQERADLEKAWVQRRMMLDQCL-ELQLFHRDCEQAENWMAAREAFLN-TEDK 147
Query: 62 GYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQR 121
G + D +E +++ + ++ +++I +LI+ H + +V R
Sbjct: 148 GDSLDSVEALIKKHEDFDKAINVQEEKIAALQAFADQLIAA-GHYAKGDISSRRNEVLDR 206
Query: 122 YNNLNTSIINR 132
+ L +I +
Sbjct: 207 WRRLKAQMIEK 217
>1hci_A Alpha-actinin 2; triple-helix coiled coil, contractIle protein,
muscle, Z- LINE, actin-binding protein; 2.8A {Homo
sapiens} SCOP: a.7.1.1 a.7.1.1 a.7.1.1 a.7.1.1
Length = 476
Score = 57.2 bits (137), Expect = 3e-10
Identities = 24/167 (14%), Positives = 62/167 (37%), Gaps = 1/167 (0%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV 61
I +L + ++ +L+ + ++++ K + W E + + +
Sbjct: 101 IAGAWQRLEQAEKGYEEWLLNEIRRLERLEHLAEKFRQKASTHETWAYGKEQILLQKDYE 160
Query: 62 GYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQR 121
+ + LR+ ++ +DL + ++ + Q+L + D V +++ +
Sbjct: 161 SASLTEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNE-LDYHDAVNVNDRCQKICDQ 219
Query: 122 YNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVE 168
++ L T R +AL L+ D+ F + + ME
Sbjct: 220 WDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAM 266
Score = 48.3 bits (114), Expect = 3e-07
Identities = 21/197 (10%), Positives = 59/197 (29%), Gaps = 21/197 (10%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYD-------AKRQEVDGWLTRMENR 54
+ + K+ + WD R+ L+ M + D + + W+
Sbjct: 209 VNDRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMED 268
Query: 55 MQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQ------HDDT 108
+Q M V ++ + + + A L + + + ++ V Q
Sbjct: 269 LQDMFIVHSIEEI-QSLITAHEQFKATLPEADGERQSIMAIQNEVEKVIQSYNIRISSSN 327
Query: 109 TRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQN-------FDKSIDNFLAWLSEAE 161
+++ +++ + + R ++L ++ F + W+
Sbjct: 328 PYSTVTMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKM 387
Query: 162 STMECVEVETDRQAEKQ 178
+ ++ E Q
Sbjct: 388 EEIARSSIQITGALEDQ 404
Score = 38.3 bits (88), Expect = 0.001
Identities = 22/141 (15%), Positives = 45/141 (31%), Gaps = 6/141 (4%)
Query: 5 KITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYT 64
+ +LR WD+ V R L L+ + R++ + +Q
Sbjct: 333 TMDELRTKWDKVKQLVPIRDQSLQEELARQHANERLRRQFAAQANAIGPWIQNKMEEIAR 392
Query: 65 ADV-----LEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVN 119
+ + LE Q+ + K ++ +K I Q + D E +
Sbjct: 393 SSIQITGALEDQMNQLKQYEHNIINYKNNIDKLEGDHQLIQEA-LVFDNKHTNYTMEHIR 451
Query: 120 QRYNNLNTSIINRGKALNSAM 140
+ L T+I + + +
Sbjct: 452 VGWELLLTTIARTINEVETQI 472
Score = 32.2 bits (72), Expect = 0.087
Identities = 22/156 (14%), Positives = 48/156 (30%), Gaps = 13/156 (8%)
Query: 35 QRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQI----- 89
+ Y+ E+ W+ R ++ P + + +L + + K Q
Sbjct: 14 EEYERLASELLEWIRRTIPWLENRTPEKTMQAM-QKKLEDFRDYRRKHKPPKVQEKCQLE 72
Query: 90 VLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQN---- 145
+ FN L KL + K+ + + L + + L + + L+
Sbjct: 73 INFNTLQTKLRISNRPAFMPSEGKMVSDIAGAWQRLEQAEKGYEEWLLNEIRRLERLEHL 132
Query: 146 ---FDKSIDNFLAWLSEAESTMECVEVETDRQAEKQ 178
F + W E + + E+ E +
Sbjct: 133 AEKFRQKASTHETWAYGKEQILLQKDYESASLTEVR 168
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 52.7 bits (126), Expect = 5e-09
Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 9/121 (7%)
Query: 42 QEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLIS 101
Q++ W+ ++R+ G +E QL + +H + +F+ +I +L
Sbjct: 15 QDLLAWVEENQHRVDGA-EWGVDLPSVEAQLGSHRGLHQSIEEFRAKIERARSDEGQL-- 71
Query: 102 VYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAE 161
+ +++ +Y L S R ++L SL +F + L WL+E E
Sbjct: 72 --SPATRGAYRDCLGRLDLQYAKLLNSSKARLRSLE----SLHSFVAAATKELMWLNEKE 125
Query: 162 S 162
Sbjct: 126 E 126
Score = 40.7 bits (95), Expect = 8e-05
Identities = 16/135 (11%), Positives = 42/135 (31%), Gaps = 6/135 (4%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV 61
+ +L + + N AR L+S+ + A + WL E +
Sbjct: 79 YRDCLGRLDLQYAKLLNSSKARLRSLESL----HSFVAAATKELMWLNEKEEEEVGFDWS 134
Query: 62 GYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQR 121
++ + ++ +L +++I +L+ H V+ + +
Sbjct: 135 DRNTNM-TAKKESYSALMRELELKEKKIKELQNAGDRLLRE-DHPARPTVESFQAALQTQ 192
Query: 122 YNNLNTSIINRGKAL 136
++ + L
Sbjct: 193 WSWMLQLCCCIEAHL 207
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer,
complex, three-helix bundle, alpha helix repeat, helical
linker, actin capping; 2.80A {Homo sapiens}
Length = 185
Score = 49.1 bits (117), Expect = 7e-08
Identities = 21/138 (15%), Positives = 56/138 (40%), Gaps = 3/138 (2%)
Query: 32 SDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVL 91
+D R+ + +++ W+ + +++ +E+ ++ + I+A++ +
Sbjct: 4 ADKFRFFSMARDLLSWMESIIRQIETQER-PRDVSSVELLMKYHQGINAEIETRSKNFSA 62
Query: 92 FNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSID 151
+L + L+ QH + +++ +QV R +N R + L + + F +
Sbjct: 63 CLELGESLLQR-QHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLL-EVCQFSRDAS 120
Query: 152 NFLAWLSEAESTMECVEV 169
AWL E + +
Sbjct: 121 VAEAWLIAQEPYLASGDF 138
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple
helical bundle, actin cappin binding, alternative
splicing, calcium; 2.30A {Homo sapiens}
Length = 149
Score = 47.6 bits (113), Expect = 2e-07
Identities = 17/135 (12%), Positives = 53/135 (39%), Gaps = 4/135 (2%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV 61
I + ++ + + R+ +L+ Q + +E++ W+ +
Sbjct: 17 IQERRQQVLDRYHRFKELSTLRRQKLEDSY-RFQFFQRDAEELEKWIQEKLQIAS--DEN 73
Query: 62 GYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQR 121
L+ +L++ ++ A++ IV ++ +IS H + ++ +++++
Sbjct: 74 YKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISE-GHFASETIRTRLMELHRQ 132
Query: 122 YNNLNTSIINRGKAL 136
+ L + +G L
Sbjct: 133 WELLLEKMREKGIKL 147
Score = 33.3 bits (76), Expect = 0.019
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 1/73 (1%)
Query: 106 DDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTME 165
+ +++ +QV RY+ R + L + Q F + + W+ E
Sbjct: 12 ETAEDIQERRQQVLDRYHRFKELSTLRRQKLEDSYR-FQFFQRDAEELEKWIQEKLQIAS 70
Query: 166 CVEVETDRQAEKQ 178
+ + +
Sbjct: 71 DENYKDPTNLQGK 83
>3lbx_A Spectrin alpha chain, erythrocyte; tetramer, complex, three-helix
bundle, alpha helix repeat, helical linker, actin
capping; 2.80A {Homo sapiens} PDB: 1owa_A
Length = 161
Score = 47.2 bits (112), Expect = 2e-07
Identities = 16/139 (11%), Positives = 52/139 (37%), Gaps = 4/139 (2%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV 61
I + ++ + +V R +L+ Q + ++ W+ N + +
Sbjct: 27 IQERRQEVLTRYQSFKERVAERGQKLEDSY-HLQVFKRDADDLGKWIMEKVNILT--DKS 83
Query: 62 GYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQR 121
++ + ++ +S+ A++ + + + ++ ++ H K E++
Sbjct: 84 YEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTM-GHSAHEETKAHIEELRHL 142
Query: 122 YNNLNTSIINRGKALNSAM 140
++ L + +G L A+
Sbjct: 143 WDLLLELTLEKGDQLLRAL 161
Score = 33.4 bits (76), Expect = 0.018
Identities = 12/61 (19%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 105 HDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTM 164
+ +++ ++V RY + + RG+ L + LQ F + D+ W+ E + +
Sbjct: 21 LETAEEIQERRQEVLTRYQSFKERVAERGQKLEDSYH-LQVFKRDADDLGKWIMEKVNIL 79
Query: 165 E 165
Sbjct: 80 T 80
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 1e-05
Identities = 34/245 (13%), Positives = 66/245 (26%), Gaps = 79/245 (32%)
Query: 9 LREHW-DETNNKVMARK---TQLDSMLSDSQ---RYDAKRQEVDGWLTRMENRMQRMNPV 61
L E M + Q D + +D+Q +Y+ R + ++ + + P
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP---YLKLRQALLELRPA 150
Query: 62 GY--------------TADVL---EVQ-----------LREQKSIHADLHQFKQQIVLFN 93
DV +VQ L+ S L + L
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---EMLQKLLY 207
Query: 94 QLTQKLISVYQHDDTTRVKKITEQVNQRYNNL-----------------NTSIIN----- 131
Q+ S + D ++ +K + L N N
Sbjct: 208 QIDPNWTS--RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS 265
Query: 132 -------RGKALNSAMSSLQNFDKSIDNFLAWLSEAEST---MECVEVETD---RQAEKQ 178
R K + +S+ S+D+ L+ E ++ ++ R+
Sbjct: 266 CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 179 STPLL 183
+ P
Sbjct: 326 N-PRR 329
Score = 27.1 bits (59), Expect = 4.6
Identities = 32/274 (11%), Positives = 69/274 (25%), Gaps = 113/274 (41%)
Query: 1 MILHKITKLREHWD-----ETNNKVMARKTQLDSMLSDSQR------------------- 36
+I I WD + ++ L+ + R
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 37 -----YDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQK-SIHADLHQ-FKQQI 89
+D + +V + ++ ++E Q +E SI ++ K ++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKY-----------SLVEKQPKESTISIP-SIYLELKVKL 439
Query: 90 VLFNQLTQKLISVYQ-------------------------HDDTTRVKKITEQVNQRYNN 124
L + ++ Y H + + +
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499
Query: 125 LN---TSIINRGKALN---SAMSSLQNFDK-----------------SIDNFL------- 154
I + A N S +++LQ +I +FL
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 155 -----------AWLSEAESTMECVEVETDRQAEK 177
A ++E E+ E E +Q ++
Sbjct: 560 ICSKYTDLLRIALMAEDEAIFE----EAHKQVQR 589
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome;
2.95A {Homo sapiens}
Length = 450
Score = 43.5 bits (102), Expect = 1e-05
Identities = 22/121 (18%), Positives = 42/121 (34%), Gaps = 18/121 (14%)
Query: 42 QEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLIS 101
E GW+ + M + G +E + + IH + ++ Q+
Sbjct: 12 SECLGWMRQQRAEMDMV-AWGVDLASVEQHINSHRGIHNSIGDYRWQLD----------- 59
Query: 102 VYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAE 161
+ R K Q+ + Y NL + R L LQN ++ + W+++ E
Sbjct: 60 --KIKADLREKSAIYQLEEEYENLLKASFERMDHLRQ----LQNIIQATSREIMWINDCE 113
Query: 162 S 162
Sbjct: 114 E 114
Score = 42.4 bits (99), Expect = 4e-05
Identities = 20/183 (10%), Positives = 56/183 (30%), Gaps = 7/183 (3%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV 61
I +L E ++ R L + Q W+ E +
Sbjct: 67 EKSAIYQLEEEYENLLKASFERMDHLRQL----QNIIQATSREIMWINDCEEEELLYDWS 122
Query: 62 GYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQR 121
++ + Q + L ++++ Q + +L+ QH + +++ + + +
Sbjct: 123 DKNTNIAQKQEAFS-IRMSQLEVKEKELNKLKQESDQLVL-NQHPASDKIEAYMDTLQTQ 180
Query: 122 YNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEVETDRQAEKQSTP 181
++ + L + Q F + + A+L + ++ +
Sbjct: 181 WSWILQITKCIDVHLKENAAYFQ-FFEEAQSTEAYLKGLQDSIRKKYPCDKNMPLQHLLE 239
Query: 182 LLK 184
+K
Sbjct: 240 QIK 242
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural
prote intermediate filament, crosslinking; 2.95A {Homo
sapiens}
Length = 283
Score = 42.0 bits (98), Expect = 4e-05
Identities = 16/163 (9%), Positives = 46/163 (28%), Gaps = 7/163 (4%)
Query: 22 ARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHAD 81
+ L+S+ + A + WL E + ++ + ++ +
Sbjct: 2 SHMRSLESL----HSFVAAATKELMWLNEKEEEEVGFDWSDRNTNMTAKK-ESYSALMRE 56
Query: 82 LHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMS 141
L +++I +L+ H V+ + +++ + L +
Sbjct: 57 LELKEKKIKELQNAGDRLLRE-DHPARPTVESFQAALQTQWSWMLQLCCCIEAHLKENAA 115
Query: 142 SLQNFDKSIDNFLAWLSEAESTMECVEVETDRQAEKQSTPLLK 184
F + L + + + + LL+
Sbjct: 116 -YFQFFSDVREAEGQLQKLQEALRRKYSCDRSATVTRLEDLLQ 157
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.024
Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 33/111 (29%)
Query: 99 LISVYQ--H-DDTTRVKKIT-EQVNQRYNNLNTSIINRGKALNSAM-----SSLQNFDKS 149
LI V Q H T ++ T ++ + L +A+ S ++F S
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYL----KGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 150 IDNFLAWL---------------SEAESTMECVEVETDRQAEKQSTPLLKV 185
+ + L + +E E +P+L +
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN-----EGVPSPMLSI 341
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 0.30
Identities = 9/50 (18%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 8 KLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQR 57
+R+ W E K + ++ R AK ++++ W R ++++
Sbjct: 86 SIRK-WREEQRKRLQELDAASKVMEQEWREKAK-KDLEEWNQRQSEQVEK 133
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton,
hemidesmosomes epidermolysis bullosa, structural
protein; 2.05A {Homo sapiens} PDB: 2odu_A
Length = 235
Score = 29.3 bits (65), Expect = 0.65
Identities = 17/136 (12%), Positives = 44/136 (32%), Gaps = 12/136 (8%)
Query: 4 HKITKLREHWDETNNKVMARKTQLDSMLSD-------SQRYDAKRQEVDGWLTRMENRMQ 56
+ + + W + + ++ R+ QL S + + + L + + +Q
Sbjct: 93 YHPLDVEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALLQ 152
Query: 57 RMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITE 116
+ + + DL + I L Q L +H ++ +
Sbjct: 153 SDVRLLA----AGKVPQRAGEVERDLDKADSMIRLLFNDVQTLKD-GRHPQGEQMYRRVY 207
Query: 117 QVNQRYNNLNTSIINR 132
++++R + T R
Sbjct: 208 RLHKRLVAIRTEYNLR 223
>3rga_A Epoxide hydrolase; NTF2-like, epoxide-opening cyclic ether
formation, isomerase; HET: LSB ILD; 1.59A {Streptomyces
lasaliensis}
Length = 283
Score = 27.9 bits (61), Expect = 1.9
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 5 KITKLREHWDETNNKVMARKTQL-DSMLSDSQRY--DAKRQEVDGWLTRMENRMQRMNPV 61
I ++R W T++ AR + ++ + +VDG L R++ +PV
Sbjct: 114 LIREMRVMWGVTDSSWTARPAPDEERRKELAREHCLRINDGDVDGLLKLYSPRIRFEDPV 173
Query: 62 G 62
G
Sbjct: 174 G 174
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 2.1
Identities = 5/35 (14%), Positives = 14/35 (40%), Gaps = 12/35 (34%)
Query: 40 KRQEVDGWLTRMENRMQRMNPVGYTAD---VLEVQ 71
++Q L +++ ++ Y D L ++
Sbjct: 18 EKQA----LKKLQASLKL-----YADDSAPALAIK 43
>3smt_A Histone-lysine N-methyltransferase SETD3; histone
methyltransferase, histone modification, LYSI
translational modification, structural genomics; HET:
SAM; 2.04A {Homo sapiens}
Length = 497
Score = 27.1 bits (59), Expect = 4.1
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 13/103 (12%)
Query: 93 NQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDN 152
LT +L+ K+ E V R L I + K L+ + + +
Sbjct: 25 LNLTSELLQKCSSPAPGPGKEWEEYVQIR--TLVEKIRKKQKGLSVTFDGKR--EDYFPD 80
Query: 153 FLAWLSEAESTMECVEVETDRQAE---------KQSTPLLKVP 186
+ W SE +++E E+ ++ K L VP
Sbjct: 81 LMKWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELFLWVP 123
>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative; HET:
MSE; 2.30A {Shewanella oneidensis}
Length = 407
Score = 26.6 bits (59), Expect = 5.4
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 1/63 (1%)
Query: 77 SIHADLHQ-FKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKA 135
S H H ++ + F L+ H T+ + +N KA
Sbjct: 3 SSHHHHHHSSGRENLYFQGHMTNLVDKAAHSFATQNVVFQTLATASGKLVGVVTLNVEKA 62
Query: 136 LNS 138
LN+
Sbjct: 63 LNA 65
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein
structure initiative eukaryotic initiation factor; 2.10A
{Leishmania major} SCOP: c.124.1.5
Length = 383
Score = 26.4 bits (59), Expect = 6.7
Identities = 4/36 (11%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 47 W-LTRMENRMQRMNPVGYTADVLEVQLREQKSIHAD 81
L ++ ++ +++P A+V + + ++++ +
Sbjct: 116 NCLRDLKAQVDKLDPTKAAAEVAQAFVELAEAVYTN 151
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.127 0.352
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,532,319
Number of extensions: 128350
Number of successful extensions: 356
Number of sequences better than 10.0: 1
Number of HSP's gapped: 315
Number of HSP's successfully gapped: 75
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.8 bits)