RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3215
(186 letters)
>d1quua1 a.7.1.1 (A:1-124) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 124
Score = 47.2 bits (112), Expect = 5e-08
Identities = 19/123 (15%), Positives = 50/123 (40%), Gaps = 4/123 (3%)
Query: 21 MARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHA 80
+ R +L+ + +++ K + W E + + + + + LR+ ++ +
Sbjct: 6 IRRLERLEHLA---EKFRQKASTHETWAYGKEQILLQKDYESASLTEVRALLRKHEAFES 62
Query: 81 DLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAM 140
DL + ++ + Q+L + + D V +++ +++ L T R +AL
Sbjct: 63 DLAAHQDRVEQIAAIAQELNELD-YHDAVNVNDRCQKICDQWDRLGTLTQKRREALERME 121
Query: 141 SSL 143
L
Sbjct: 122 KLL 124
>d1s35a1 a.7.1.1 (A:1063-1168) Spectrin beta chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 106
Score = 42.4 bits (99), Expect = 2e-06
Identities = 12/106 (11%), Positives = 36/106 (33%), Gaps = 1/106 (0%)
Query: 35 QRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQ 94
Q + + WL+ + + + + E L++ I ++ + +
Sbjct: 2 QAFLQDLDDFQAWLSITQKAVASEDMPESLPEA-EQLLQQHAGIKDEIDGHQDSYQRVKE 60
Query: 95 LTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAM 140
+K+I + + + E ++ ++ L +R L +
Sbjct: 61 SGEKVIQGQTDPEYLLLGQRLEGLDTGWDALGRMWESRSHTLAQCL 106
>d1u5pa1 a.7.1.1 (A:1662-1771) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 110
Score = 41.9 bits (98), Expect = 4e-06
Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 2/106 (1%)
Query: 35 QRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQ 94
Q ++ ++ D WL+ +E + G + L++ + + AD+ + ++ N
Sbjct: 5 QNFNTGIKDFDFWLSEVEALLASE-DYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNS 63
Query: 95 LTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSAM 140
L++ DT++VK E +N R+ + + R LN +
Sbjct: 64 QADSLMT-SSAFDTSQVKDKRETINGRFQRIKSMAAARRAKLNESH 108
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 39.0 bits (90), Expect = 8e-05
Identities = 15/135 (11%), Positives = 50/135 (37%), Gaps = 4/135 (2%)
Query: 2 ILHKITKLREHWDETNNKVMARKTQLDSMLSDSQRYDAKRQEVDGWLTRMENRMQRMNPV 61
I + ++ + +V R +L+ Q + ++ W+ N + +
Sbjct: 24 IQERRQEVLTRYQSFKERVAERGQKLEDSY-HLQVFKRDADDLGKWIMEKVNIL--TDKS 80
Query: 62 GYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQR 121
++ + ++ +S+ A++ + + + ++ ++ H K E++
Sbjct: 81 YEDPTNIQGKYQKHQSLEAEVQTKSRLMSELEKTREERFTMG-HSAHEETKAHIEELRHL 139
Query: 122 YNNLNTSIINRGKAL 136
++ L + +G L
Sbjct: 140 WDLLLELTLEKGDQL 154
Score = 25.9 bits (56), Expect = 2.6
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 111 VKKITEQVNQRYNNLNTSIINRGKALNSAMSSLQNFDKSIDNFLAWLSEAESTMECVEVE 170
+++ ++V RY + + RG+ L + LQ F + D+ W+ E + + E
Sbjct: 24 IQERRQEVLTRYQSFKERVAERGQKLEDSY-HLQVFKRDADDLGKWIMEKVNILTDKSYE 82
Query: 171 TDRQAEKQ 178
+ +
Sbjct: 83 DPTNIQGK 90
>d2spca_ a.7.1.1 (A:) Spectrin alpha chain {Drosophila sp. [TaxId:
7242]}
Length = 107
Score = 35.7 bits (82), Expect = 7e-04
Identities = 18/105 (17%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 33 DSQRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLF 92
D Q Y + + W++ E + + +E +++ + ++ +Q+I
Sbjct: 4 DLQLYMRDCELAESWMSAREAFLN-ADDDANAGGNVEALIKKHEDFDKAINGHEQKIAAL 62
Query: 93 NQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALN 137
+ +LI+ H + V + +QV +R+ +L +I + L
Sbjct: 63 QTVADQLIAQ-NHYASNLVDEKRKQVLERWRHLKEGLIEKRSRLG 106
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 101
Score = 35.0 bits (80), Expect = 0.001
Identities = 13/95 (13%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Query: 42 QEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLIS 101
+ + W+ + + G ++ ++ K + A+L + I +KL
Sbjct: 8 DDEESWIKEKKLLVS-SEDYGRDLTGVQNLRKKHKRLEAELAAHEPAIQGVLDTGKKLSD 66
Query: 102 VYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKAL 136
+++ Q + L RG+ L
Sbjct: 67 D-NTIGKEEIQQRLAQFVDHWKELKQLAAARGQRL 100
>d1cuna2 a.7.1.1 (A:116-219) Spectrin alpha chain {Chicken (Gallus
gallus) [TaxId: 9031]}
Length = 104
Score = 34.6 bits (79), Expect = 0.001
Identities = 12/98 (12%), Positives = 35/98 (35%), Gaps = 2/98 (2%)
Query: 42 QEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQLTQKLIS 101
+E + W+ + + G T ++ L++ ++ D K ++ + LI
Sbjct: 7 EEEEAWINEKMTLVASED-YGDTLAAIQGLLKKHEAFETDFTVHKDRVNDVCANGEDLIK 65
Query: 102 VYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKALNSA 139
+ + + + + ++L + R L+
Sbjct: 66 K-NNHHVENITAKMKGLKGKVSDLEKAAAQRKAKLDEN 102
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 105
Score = 30.1 bits (67), Expect = 0.051
Identities = 11/102 (10%), Positives = 37/102 (36%), Gaps = 2/102 (1%)
Query: 35 QRYDAKRQEVDGWLTRMENRMQRMNPVGYTADVLEVQLREQKSIHADLHQFKQQIVLFNQ 94
Q + ++ + L+ E + + + + E +R+ + + + +++
Sbjct: 3 QEFQKDAKQAEAILSNQEYTLAHLE-PPDSLEAAEAGIRKFEDFLGSMENNRDKVLSPVD 61
Query: 95 LTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTSIINRGKAL 136
KL+ + + ++K+ + + R+ N L
Sbjct: 62 SGNKLV-AEGNLYSDKIKEKVQLIEDRHRKNNEKAQEASVLL 102
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 199
Score = 27.1 bits (60), Expect = 1.0
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 112 KKITEQVNQRYNNLNTSIIN-----RGKALNSAMSSLQNFDKSIDN 152
K+ E + +Y L+ I +GK + S ++ + +K + N
Sbjct: 22 DKVGEYLGDKYKALSREIAENINNFQGKTIRSYDDAMSSINKLMAN 67
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Length = 197
Score = 27.1 bits (60), Expect = 1.1
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 112 KKITEQVNQRYNNLNTSIIN-----RGKALNSAMSSLQNFDKSIDN 152
KI E + +Y + I + +GK + S ++ + +K N
Sbjct: 20 DKIGEHLGDKYKAIAKDIADNIKNFQGKTIRSFDDAMASLNKITAN 65
>d1tx3a1 c.52.1.19 (A:2-258) Restriction endonuclease HincII
{Haemophilus influenzae [TaxId: 727]}
Length = 257
Score = 25.7 bits (56), Expect = 3.6
Identities = 19/100 (19%), Positives = 37/100 (37%), Gaps = 17/100 (17%)
Query: 86 KQQIVLFNQLTQKLISVYQHDDTTRVKKITEQVNQRYNNLNTS----IINRGKALNSAMS 141
+Q N L K ++ H+ RY N+ +++RGKA S
Sbjct: 53 FKQYEYLNDLFMKNPAIIGHE-------------ARYKLFNSPTLLFLLSRGKAATENWS 99
Query: 142 SLQNFDKSIDNFLAWLSEAESTMECVEVETDRQAEKQSTP 181
F++ ++ L + E ++V+T ++ P
Sbjct: 100 IENLFEEKQNDTADILLVKDQFYELLDVKTRNISKSAQAP 139
>d1nh2d1 a.32.1.1 (D:5-54) Small chain TOA2, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 50
Score = 22.7 bits (49), Expect = 8.8
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 139 AMSSLQNFDKSIDNFLA 155
AM L+ FDK + L
Sbjct: 33 AMRVLETFDKVVAETLK 49
>d1nvpd1 a.32.1.1 (D:3-53) Small chain TOA2, N-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 22.7 bits (49), Expect = 8.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 139 AMSSLQNFDKSIDNFLA 155
A+ L FDK+I+ LA
Sbjct: 31 ALQVLLQFDKAINAALA 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.127 0.352
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 605,985
Number of extensions: 23888
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 36
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)