BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3216
         (547 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1EG3|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
           With A Beta-Dystroglycan Peptide
 pdb|1EG4|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
           With A Beta-Dystroglycan Peptide
          Length = 261

 Score =  184 bits (467), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/252 (43%), Positives = 146/252 (57%), Gaps = 35/252 (13%)

Query: 86  SHHTETTSWDHPKMIQLMNSLSELNEVRFSAYRTALKLRTVQKRLCLDLLNLVRAIEAFD 145
           +H T+TT WDHPKM +L  SL++LN VRFSAYRTA+KLR +QK LCLDLL+L  A +A D
Sbjct: 30  NHETQTTCWDHPKMTELYQSLADLNNVRFSAYRTAMKLRRLQKALCLDLLSLSAACDALD 89

Query: 146 THGLRAQNDKLLDVSDMVVLEEENHMLQAEYERLRGXXXXXXXXXXXXXXXLEMAAEAKL 205
            H L+ QND+ +D+  ++      + L   Y+RL                 ++M     L
Sbjct: 90  QHNLK-QNDQPMDILQII------NCLTTIYDRLE----QEHNNLVNVPLCVDMCLNWLL 138

Query: 206 LRQHKGRLEARMQILEDHNRQLEAQLSQLESKDRSSSRFIFQNLFRLIADPNRLVDQRKL 265
                GR   R+++L      +    + LE K        ++ LF+ +A      DQR+L
Sbjct: 139 NVYDTGR-TGRIRVLSFKTGIISLCKAHLEDK--------YRYLFKQVASSTGFCDQRRL 189

Query: 266 GLLLHDCIQLPRQLGEVASFGGSNIEPS---------------AVHFLSWLQQEPQSIVW 310
           GLLLHD IQ+PRQLGEVASFGGSNIEPS               A  FL W++ EPQS+VW
Sbjct: 190 GLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMRLEPQSMVW 249

Query: 311 LPVLHRLSAAES 322
           LPVLHR++AAE+
Sbjct: 250 LPVLHRVAAAET 261


>pdb|2E5R|A Chain A, Solution Structure Of The Zz Domain Of Dystrobrevin Alpha
           (Dystrobrevin-Alpha)
          Length = 63

 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 318 SAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCT 377
           S +    H  +C+ C    ++GFRYRC +C N+ +CQ CF++G    +H   H M+EY +
Sbjct: 3   SGSSGVFHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTS 62


>pdb|2DIP|A Chain A, Solution Structure Of The Zz Domain Of Zinc Finger Swim
           Domain Containing Protein 2
          Length = 98

 Score = 39.3 bits (90), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 329 CNICKECPIIGFRYRCLKCFNFDMCQTCF 357
           CN CK+ PI G  Y+C +C  + +CQ CF
Sbjct: 34  CNNCKQFPIEGKCYKCTECIEYHLCQECF 62


>pdb|1TOT|A Chain A, Zz Domain Of Cbp- A Novel Fold For A Protein Interaction
           Module
          Length = 52

 Score = 29.3 bits (64), Expect = 6.1,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 4/40 (10%)

Query: 329 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKL 368
           CN CK    +  R+ C  C ++D+C  C+    K+  HK+
Sbjct: 9   CNECKHH--VETRWHCTVCEDYDLCINCY--NTKSHTHKM 44


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,327,241
Number of Sequences: 62578
Number of extensions: 528308
Number of successful extensions: 1347
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1341
Number of HSP's gapped (non-prelim): 7
length of query: 547
length of database: 14,973,337
effective HSP length: 104
effective length of query: 443
effective length of database: 8,465,225
effective search space: 3750094675
effective search space used: 3750094675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)