RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3216
(547 letters)
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 164 bits (417), Expect = 3e-47
Identities = 107/255 (41%), Positives = 143/255 (56%), Gaps = 41/255 (16%)
Query: 86 SHHTETTSWDHPKMIQLMNSLSELNEVRFSAYRTALKLRTVQKRLCLDLLNLVRAIEAFD 145
+H T+TT WDHPKM +L SL++LN VRFSAYRTA+KLR +QK LCLDLL+L A +A D
Sbjct: 30 NHETQTTCWDHPKMTELYQSLADLNNVRFSAYRTAMKLRRLQKALCLDLLSLSAACDALD 89
Query: 146 THGLRAQNDKLLDVSDMVVLEEENHMLQAEYERLRGSRTTPDPSSTTTPDDLEMAAEAKL 205
H L+ QND+ +D+ ++ + L Y+RL + P ++M L
Sbjct: 90 QHNLK-QNDQPMDILQII------NCLTTIYDRLEQEH----NNLVNVPLCVDMCLNWLL 138
Query: 206 L---RQHKGRLEARMQILEDHNRQLEAQLSQLESKDRSSSRFIFQNLFRLIADPNRLVDQ 262
GR+ + + L K ++ + LF+ +A DQ
Sbjct: 139 NVYDTGRTGRIRV---------LSFKTGIISL-CKAHLEDKYRY--LFKQVASSTGFCDQ 186
Query: 263 RKLGLLLHDCIQLPRQLGEVASFGGSNIEPSA---------------VHFLSWLQQEPQS 307
R+LGLLLHD IQ+PRQLGEVASFGGSNIEPS FL W++ EPQS
Sbjct: 187 RRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMRLEPQS 246
Query: 308 IVWLPVLHRLSAAES 322
+VWLPVLHR++AAE+
Sbjct: 247 MVWLPVLHRVAAAET 261
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 63
Score = 106 bits (267), Expect = 2e-28
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 318 SAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCT 377
S + H +C+ C ++GFRYRC +C N+ +CQ CF++G +H H M+EY +
Sbjct: 3 SGSSGVFHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTS 62
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Length = 82
Score = 75.8 bits (186), Expect = 3e-17
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 318 SAAESAKHQA-KCNICKECPIIGFRYRCLKC---FNFDMCQTCFFQGKKAKNHKLTHPMQ 373
+ + +H KC+ C PI G R+ C C + D C +C + HK H ++
Sbjct: 12 AESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLE 71
Query: 374 EYCT 377
Sbjct: 72 PIYR 75
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Length = 98
Score = 67.0 bits (163), Expect = 5e-14
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 313 VLHRLSAAESAKHQ-AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHP 371
++ KH CN CK+ PI G Y+C +C + +CQ CF L+H
Sbjct: 17 LVAAAEKERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECF-----DSYCHLSHT 71
Query: 372 MQEYCTTTTSGEDV 385
+
Sbjct: 72 FTFREKRNQKWRSL 85
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR
{Mus musculus} SCOP: g.44.1.6
Length = 52
Score = 59.0 bits (143), Expect = 1e-11
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 329 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY 375
CN CK + R+ C C ++D+C C+ K+H TH M ++
Sbjct: 9 CNECK--HHVETRWHCTVCEDYDLCINCY----NTKSH--THKMVKW 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 7e-11
Identities = 63/418 (15%), Positives = 107/418 (25%), Gaps = 164/418 (39%)
Query: 176 YERLRGS--RTTPDPSSTTTPDDLEMAAEAKLL---------RQHKGRLEARMQILEDHN 224
+L+ + P+P+ DD E A+L+ ++ Q+L
Sbjct: 30 ASQLQEQFNKILPEPTEGFAADD-EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL 88
Query: 225 RQLE-------------AQLSQLESKDRSSSRFIFQNLFRLIADPNRLVDQRKLGLLLHD 271
+ E A+L Q ++ + +N R D++ L
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 272 CIQLPRQLGEV---ASFGG-SNIE------------------------------------ 291
G A FGG N +
Sbjct: 149 V-----GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 292 ------PSAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCL 345
++ L WL + P + L LS S CP+IG +
Sbjct: 204 DAEKVFTQGLNILEWL-ENPSNTPDKDYL--LSIPIS------------CPLIGV----I 244
Query: 346 KCFNFDMCQTCFFQGKKAKNHKLTHP--MQEYCTTTTSGEDV------------RDF--- 388
+ ++ T K T T + + F
Sbjct: 245 QLAHY--VVTA-------KLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 389 -TRALRNKF----KSKRYFKKHPRVGYLPVQTVLEGDALESPAPSPQHSHTIGPHDMHSR 443
+A+ F + + P LP + + PSP
Sbjct: 296 VRKAITVLFFIGVRCYEAY---PNT-SLPPSILEDSLENNEGVPSP-------------- 337
Query: 444 LEMYASR---LAEVELR-TRSNST-PDSEDEHQLIAQYCHSL-NGGD--IV--PVPRS 491
M + +V+ ++NS P + I SL NG +V P P+S
Sbjct: 338 --MLSISNLTQEQVQDYVNKTNSHLP--AGKQVEI-----SLVNGAKNLVVSGP-PQS 385
Score = 60.1 bits (145), Expect = 2e-09
Identities = 74/502 (14%), Positives = 155/502 (30%), Gaps = 149/502 (29%)
Query: 41 LKKFSERLTPLQRALEDTNDQASFFSSNNILITSNSLHKLDDLNTSHHTETTSW---DHP 97
+ +S R PL L + + ++ L + N T + D P
Sbjct: 1 MDAYSTR--PLT--LSHGSLEHVLLVPTASFFIASQLQ--EQFNKILPEPTEGFAADDEP 54
Query: 98 KMIQLMNSLSELNEVRFSAYRTALKLRTVQKRLCLDLLNLVRAIEAFDTHGLRAQNDKLL 157
+ +EL +F Y + + + +LNL + F+ L
Sbjct: 55 T------TPAEL-VGKFLGY-VSSLVEPSKVGQFDQVLNLC--LTEFENCYLEGN----- 99
Query: 158 DVSDMVVLEEENHMLQAEYERLRGSRTTPDPSSTTTPDDLEMAAEAKLLRQHKGRLEARM 217
D+ H L A +D + +L++ + + AR+
Sbjct: 100 DI----------HALAA---------------KLLQENDTTLVKTKELIKNY---ITARI 131
Query: 218 QILEDHNRQLEAQLSQLESKDRSSSRF--IF--QNLFRLIADPNRLVDQ-RKL----GLL 268
+++ + L + +++ IF Q + + ++ R L +L
Sbjct: 132 MAKRPFDKKSNSAL--FRAVGEGNAQLVAIFGGQ------GNTDDYFEELRDLYQTYHVL 183
Query: 269 LHDCIQLPRQ-LGEVAS--FGGSNIEPSAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKH 325
+ D I+ + L E+ + ++ L WL+ P + L LS S
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE-NPSNTPDKDYL--LSIPIS--- 237
Query: 326 QAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTTTSGEDV 385
CP+IG ++ ++ T K T ++
Sbjct: 238 ---------CPLIGV----IQLAHY--VVTA-------KLLGFTP------------GEL 263
Query: 386 RDFTRALRNKFKSKRYFKKHPRVGYLPVQTVLEGDALESPAPSPQHSHTIGPHDMHSRLE 445
R + + G+ Q ++ A+ + S + +
Sbjct: 264 RSYLKGA---------------TGH--SQGLVTAVAI-AETDSWE--------SFFVSVR 297
Query: 446 MYASRLAEVELRTRSNSTPDSEDEHQLIAQYCHSLNGGDIVPVPRSPVQVMHAIDADQRE 505
+ L + +R + P++ ++ SL + VP SP M +I +E
Sbjct: 298 KAITVLFFIGVRCY-EAYPNTSLPPSILED---SLENNEGVP---SP---MLSISNLTQE 347
Query: 506 ELEVMISVLNPTL-QTRSVTAS 526
+++ ++ N L + V S
Sbjct: 348 QVQDYVNKTNSHLPAGKQVEIS 369
Score = 44.3 bits (104), Expect = 1e-04
Identities = 75/487 (15%), Positives = 133/487 (27%), Gaps = 173/487 (35%)
Query: 36 ELRE----Y-------LKKFSERLTPLQRALEDTNDQASFFSSN-NI---LITSNSLHKL 80
ELR+ Y +K +E L+ L + T D F+ NI L ++
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSEL---IRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 81 DDLNTSHHTETTSWDHPKMIQLMNSLSELNEVRFSAYRTALKLRTVQKRLCLDLLNLVRA 140
D L + S P +I + ++ + Y KL L L
Sbjct: 229 DYLLSI----PISC--P-LIGV---------IQLAHYVVTAKL------LGFTPGELRSY 266
Query: 141 IEAFDTHGLRAQNDKLLDVSDMVVLEEENHMLQAEYERLRGSRTTPDPSSTTTPDDLEMA 200
++ H +V A + T + + ++
Sbjct: 267 LKGATGHS-----------QGLVT---------AVA-----------IAETDSWESFFVS 295
Query: 201 AEAKL-------LRQHK--GRLEARMQILEDHNRQLEAQLS-QLESKDRSSSRFIFQNLF 250
+ +R ++ ILED E S L + + + +
Sbjct: 296 VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ-----VQ 350
Query: 251 RLIADPNRLVDQRKLGLLLHDCIQL---PRQLGEVASFGGSNIEPSAVHFLSWLQQEPQS 307
+ N + K I L + L V S G PQS
Sbjct: 351 DYVNKTNSHLPAGK-----QVEISLVNGAKNL--VVS--GP----------------PQS 385
Query: 308 IVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRY-------------RCLKCFNFDM-C 353
+ L + R + A S Q++ + R+ N D+
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVK 445
Query: 354 QTCFFQGKKAKNHKLTHPMQEYCTTTTSGEDVRDFTRALRNKFKSKRYFKKHPRVGYLPV 413
F K + P+ Y T G D+R + ++ R+ V
Sbjct: 446 NNVSFNAK-----DIQIPV--YDTFD--GSDLRVLSGSIS------------ERI----V 480
Query: 414 QTVLEG-----DALESPAPSPQHSHTI--GPHDMHSRLEMYASRLAE------VELRTRS 460
++ + A +H + GP S L + R + + T
Sbjct: 481 DCIIRLPVKWETTTQFKA-----THILDFGPGGA-SGLGVLTHRNKDGTGVRVIVAGTL- 533
Query: 461 NSTPDSE 467
+ PD +
Sbjct: 534 DINPDDD 540
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 4e-06
Identities = 70/491 (14%), Positives = 130/491 (26%), Gaps = 184/491 (37%)
Query: 6 KSLDDLSNRLSAAESVKNTWTSVSDASQIPELR-EYLKKFSERL---TPLQRAL------ 55
+ L L ++ N WTS SD S +LR ++ RL P + L
Sbjct: 200 EMLQKLLYQID-----PN-WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 56 EDTNDQASF-FSSNNILITSNSLHKLDDLNTSHHTETTSWDHPKMIQLMNSLSELNEVRF 114
++ +F S IL+T+ D L+ + T H + +L+ +EV
Sbjct: 254 QNAKAWNAFNLSCK-ILLTTRFKQVTDFLSAATTT------HISLDHHSMTLTP-DEV-- 303
Query: 115 SAYRTALKLRTVQKRLCLDLLNLVRAIEAFDTHGLRAQNDKLLDVSDMVVLEEENHMLQA 174
K L L L+ D+
Sbjct: 304 -------------KSLLLKYLD--------------------CRPQDL------------ 318
Query: 175 EYERLRGSRTTPDPSSTTTPDDLEMAAEAKLLRQHKGRLEA-RMQILEDHNRQLEAQLSQ 233
P TT P L + AE +R + + + +E+ L+
Sbjct: 319 -----------PREVLTTNPRRLSIIAE--SIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 234 LESKDRSSSRFIFQNLFRLIADPNRLVDQRKLGLLLHDCIQLPRQLGEVASFGGSNIEPS 293
LE + ++ +F +L + ++I P+
Sbjct: 366 LEPAE-------YRKMF------------DRLSVFPPS----------------AHI-PT 389
Query: 294 AVHFLSWLQ---QEPQSIVWLPVLHRLSAAESAKHQAKCNI-------CKECP------- 336
+ L W + +V LH+ S E ++ +I +
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNK--LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447
Query: 337 -IIGFRYRCLKCFNFDMCQT-------CFFQG---KKAKNH------------------K 367
I+ Y K F+ D G K ++ K
Sbjct: 448 SIVD-HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 368 LTHPMQEYCTTTTSGEDVRDFTRALRNKFKSKRYFKKHPRVGYLPVQTVLEGDALESPAP 427
+ H + + + ++ K Y + P L + P
Sbjct: 507 IRHDSTAWNASGSILNTLQQLK-------FYKPYICDND-----PKYERLVNA-ILDFLP 553
Query: 428 SPQHSHTIGPH 438
+ + +
Sbjct: 554 KIEENLICSKY 564
Score = 37.5 bits (86), Expect = 0.011
Identities = 47/311 (15%), Positives = 86/311 (27%), Gaps = 94/311 (30%)
Query: 108 ELNEVRFSAYRTALK--LRTVQKRL-CLDLLNLVRAI---EAFDTHGLRAQN-------- 153
E E ++ Y+ L C D+ ++ ++I E D H + +++
Sbjct: 10 ETGEHQYQ-YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTLRL 67
Query: 154 -DKLLDVSDMVVLEEENHMLQAEYERLRGS-RTTP-DPSSTTTPDDLEMAAEAKLLRQHK 210
LL + +V + +L+ Y+ L +T PS T ++ + +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-----------RMYIEQR 116
Query: 211 GRLEARMQILEDHNRQLEAQLSQLESKDRSSSRFIFQNLFRLIADPNRLVDQRKLGLLLH 270
RL Q+ +N +L L L P + +L+
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQA-----------LLEL--RPAK-------NVLID 156
Query: 271 DCIQLPRQLGEVASFGGSNIEPSAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCN 330
G V G + + + I WL + CN
Sbjct: 157 ---------G-VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL-------------KNCN 193
Query: 331 ICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTTTSGEDVRDFTR 390
+ +M Q +Q + H ++
Sbjct: 194 SPETV--------------LEMLQKLLYQIDPNWTSRSDHS----SNIKLRIHSIQA--- 232
Query: 391 ALRNKFKSKRY 401
LR KSK Y
Sbjct: 233 ELRRLLKSKPY 243
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding
domain, PDI-like protein, structural genomics; NMR
{Arabidopsis thaliana} SCOP: g.49.1.3
Length = 89
Score = 39.5 bits (92), Expect = 2e-04
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 328 KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNH 366
C+ C+E + Y C +C +FD+ C ++
Sbjct: 49 TCDKCEE-EGTIWSYHCDEC-DFDLHAKCALNEDTKESG 85
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled
coil, cytoplasm, cytoskeleton, disease mutation, ligase,
metal-binding; NMR {Homo sapiens}
Length = 101
Score = 33.0 bits (75), Expect = 0.047
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 329 CNICKECPIIGFRYRCLKCFNFDMCQTCF----FQGKKAKNHKLTHPMQE 374
C C + P C+ C C C K H+L P+ +
Sbjct: 6 CQFCDQDPAQDAVKTCVTCEVS-YCDECLKATHPNKKPFTGHRLIEPIPD 54
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 35.6 bits (82), Expect = 0.055
Identities = 27/144 (18%), Positives = 62/144 (43%), Gaps = 1/144 (0%)
Query: 98 KMIQLMNSLSELNEVRFSAYRTALKLRTVQKRLCLDLLNLVRAIEAFDTHGLRAQNDKLL 157
K +L L E+ + +L+ +K++ +L+L +E + + Q +K+
Sbjct: 921 KKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVT 980
Query: 158 DVSDMVVLEEENHMLQAEYERLRGSRTTPDPSSTTTPDDL-EMAAEAKLLRQHKGRLEAR 216
+ +E++ +++ + +L R + + +L E +AK L + K + E+
Sbjct: 981 ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
Query: 217 MQILEDHNRQLEAQLSQLESKDRS 240
+ LE ++ E +LE R
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRK 1064
Score = 32.9 bits (75), Expect = 0.30
Identities = 36/241 (14%), Positives = 69/241 (28%), Gaps = 52/241 (21%)
Query: 5 QKSLDDLSNRLSAAESVKNTWTS--VSDASQIPELREYLKKFSERLTPLQRALEDTNDQA 62
++ L++ + K T I + + K ++ L+ + D
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020
Query: 63 SFFSSNNILITSNSLHKLDDLNTSHHTETTSWDHPKMIQLMNSLSELNEVRFSAYRTALK 122
+ L L H + + +L L + + R + K
Sbjct: 1021 A--------EEEEKAKNLTKLKNKHESMIS--------ELEVRLKKEEKSRQELEKIKRK 1064
Query: 123 LRTVQKRLCLDLLNLVRAIEAFDTHGLRAQNDKLLDVSDMVVLEEENHMLQAEYERLRGS 182
L L + L I L+AQ K EEE A E
Sbjct: 1065 LEGESSDLHEQIAELQAQIAE-----LKAQLAKK---------EEELQAALARLED---- 1106
Query: 183 RTTPDPSSTTTPDDLEMAAEAKLLRQHKGRLEARMQILEDHNRQLEAQLSQLESKDRSSS 242
E + + L++ + LE+ + L++ +A ++ E + R S
Sbjct: 1107 ---------------ETSQKNNALKKIR-ELESHISDLQEDLESEKAARNKAEKQKRDLS 1150
Query: 243 R 243
Sbjct: 1151 E 1151
Score = 28.3 bits (63), Expect = 10.0
Identities = 37/175 (21%), Positives = 66/175 (37%), Gaps = 22/175 (12%)
Query: 98 KMIQLMNSLSELNEVRFSAYRTALKLRTVQKRLCLDLLNLVRAIEAFDTHGLRAQNDKLL 157
+M+ L L E R KL+ + + + I + QN+KL
Sbjct: 956 QMLDLEEQLEEEEAAR-------QKLQLEKVTADGKIKKMEDDILIMED-----QNNKLT 1003
Query: 158 DVSDMVVLEEENHMLQ---AEYERLRGSRTTPDPSSTTTPDDLE--MAAEAKL---LRQH 209
+ LEE L AE E + T + +LE + E K L +
Sbjct: 1004 KERKL--LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061
Query: 210 KGRLEARMQILEDHNRQLEAQLSQLESKDRSSSRFIFQNLFRLIADPNRLVDQRK 264
K +LE L + +L+AQ+++L+++ + L RL + ++ + K
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALK 1116
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2;
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.85.1.2
Length = 59
Score = 29.6 bits (66), Expect = 0.34
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 6/50 (12%)
Query: 318 SAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHK 367
S + + C C + RY C +C C+ + H
Sbjct: 3 SGSSGMEPAGPCGFCPAGEVQPARYTCPRCNAPYCSLRCY------RTHG 46
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics,
ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 56
Score = 29.2 bits (65), Expect = 0.36
Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 10/50 (20%)
Query: 318 SAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHK 367
++ C IC E P +YRC C CF + HK
Sbjct: 4 GSSGLKCSTVVCVICLEKP----KYRCPACRVPYCSVVCF------RKHK 43
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
PDB: 2lb2_A*
Length = 36
Score = 28.3 bits (64), Expect = 0.44
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 87 HHTETTSWDHPKM 99
H+ TT+W P M
Sbjct: 24 HNNRTTTWTRPIM 36
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 28.4 bits (64), Expect = 0.50
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 87 HHTETTSWDHPKM 99
H T+TTSW HP M
Sbjct: 27 HVTQTTSWIHPVM 39
>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}
Length = 41
Score = 28.3 bits (64), Expect = 0.51
Identities = 6/13 (46%), Positives = 12/13 (92%)
Query: 87 HHTETTSWDHPKM 99
H+T+TT+W+ P++
Sbjct: 28 HNTKTTTWEDPRL 40
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 29.6 bits (67), Expect = 0.54
Identities = 7/32 (21%), Positives = 15/32 (46%)
Query: 204 KLLRQHKGRLEARMQILEDHNRQLEAQLSQLE 235
++ + +L + +L QL+ +L QL
Sbjct: 55 LSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Length = 36
Score = 28.2 bits (64), Expect = 0.59
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 87 HHTETTSWDHPKM 99
H+ +T W P +
Sbjct: 24 HNNRSTQWHRPSL 36
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 31.8 bits (71), Expect = 0.76
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 332 CKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTH 370
C +C + + L + +C +F G NH + H
Sbjct: 218 CSKCDMRENLWLNLTDGSI-LCGRRYFDGSGGNNHAVEH 255
>1ymz_A CC45; artificial protein, computational design, unknown function;
NMR {Synthetic} SCOP: k.22.1.1
Length = 43
Score = 28.0 bits (63), Expect = 0.87
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 87 HHTETTSWDHPKM 99
T TT+W+ P +
Sbjct: 28 VRTLTTTWERPTI 40
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament,
structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Length = 93
Score = 29.1 bits (66), Expect = 0.92
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 216 RMQILEDHNRQLEAQLSQLESKDRSSSRFIFQN--------LFRLIADPNRLVDQRK 264
+++ LE N+ L A+L QL+ + +S +++ + +L D R+ +R
Sbjct: 24 KVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERD 80
>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW
domain; NMR {Homo sapiens}
Length = 39
Score = 27.5 bits (62), Expect = 0.97
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 87 HHTETTSWDHPKM 99
H T TT+W P +
Sbjct: 26 HFTRTTTWQRPTL 38
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.2 bits (71), Expect = 0.98
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 165 LEEENHMLQAEYERLRGSRTTPDPSSTTTPDDLEMAAEAKLLRQHKGRLEARMQILEDHN 224
+EE + E E+L + T ++L ++ Q K E + L +
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEEL----NRRIHDQAKEITETMEKKLVEET 1065
Query: 225 RQLEAQLSQLESK 237
+QLE L+ +
Sbjct: 1066 KQLELDLNDERLR 1078
Score = 29.7 bits (67), Expect = 2.9
Identities = 19/150 (12%), Positives = 43/150 (28%), Gaps = 26/150 (17%)
Query: 98 KMIQLMNSLSELNEVRFSAYRTALKLRTVQKRLCLDLLNLVRAIEAFDTH--GLRAQNDK 155
K ++ +R + LR R ++ H G A+
Sbjct: 824 KFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHY 883
Query: 156 LLDVSDMVVLEEENHMLQAEYERLRGSRTTPDPSSTTTPDDLEMAAE-AKLLRQHKGRLE 214
+ +V L+ + A+ E + L++ A + ++ LE
Sbjct: 884 HRTLKAIVYLQCCYRRMMAKRELKK----------------LKIEARSVERYKKLHIGLE 927
Query: 215 A-------RMQILEDHNRQLEAQLSQLESK 237
++ + L +++ LE
Sbjct: 928 NKIMQLQRKIDEQNKEYKSLLEKMNNLEIT 957
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA
complex, transcription/DNA complex; 3.00A {Homo sapiens}
SCOP: h.1.3.1
Length = 61
Score = 28.1 bits (63), Expect = 1.0
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 207 RQHKGRLEARMQILEDHNRQLEAQLSQLES 236
+ LE + + L N QL+++++ L +
Sbjct: 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLRN 50
>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling
protein-TRAN complex; NMR {Homo sapiens}
Length = 38
Score = 27.5 bits (62), Expect = 1.1
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 87 HHTETTSWDHPKM 99
H +TTSW P++
Sbjct: 26 HKNKTTSWLDPRL 38
>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline
type II helix, PPII, ligase/signaling protein complex;
NMR {Homo sapiens} PDB: 2lb1_A
Length = 42
Score = 27.6 bits (62), Expect = 1.1
Identities = 4/13 (30%), Positives = 8/13 (61%)
Query: 87 HHTETTSWDHPKM 99
H+ TT + P++
Sbjct: 27 HNNRTTQFTDPRL 39
>1wg2_A Zinc finger (AN1-like) family protein; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, DNA binding protein; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 64
Score = 28.3 bits (63), Expect = 1.1
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 318 SAAESAKHQAKCNIC-KECPIIGFRYRCLKCF 348
+ + +C C K+ ++GF+ +C F
Sbjct: 7 GPSRPVRPNNRCFSCNKKVGVMGFKCKCGSTF 38
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta
propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A
{Streptomyces coelicolor}
Length = 347
Score = 30.8 bits (70), Expect = 1.2
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 148 GLRAQNDKLLDVSDMVVLEEENHMLQAEYERLRGSRTTPD 187
GLR + + + + L+ EY RLR
Sbjct: 279 GLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGG 318
>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three
stranded antiparallel beta sheet, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 27.6 bits (62), Expect = 1.2
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 87 HHTETTSWDHPKM 99
H + T+WD P
Sbjct: 27 HVEKRTTWDRPSG 39
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 30.1 bits (67), Expect = 1.2
Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 13/143 (9%)
Query: 98 KMIQLMNSLSELNEVRFSAYRTALKLRTVQKRLCLDLLNLVRAIEAFDTHGLRAQNDKLL 157
K+ QL L E N++ + TA++LR + + L +N K
Sbjct: 7 KLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKS- 65
Query: 158 DVSDMVVLEEENHMLQAEYERLRGSRTTPDPSSTTTPDDLEMAAEAKLLRQHKGRLEARM 217
+++ + LQA E R R + DL+ A L++ L+ +
Sbjct: 66 ------QTDKDYYQLQAILEAERRDRG----HDSEMIGDLQ--ARITSLQEEVKHLKHNL 113
Query: 218 QILEDHNRQLEAQLSQLESKDRS 240
+ +E ++ + L+ E + +
Sbjct: 114 EKVEGERKEAQDMLNHSEKEKNN 136
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase,
aldose sugar dehydrogenase, BET propeller fold,
oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum}
PDB: 3a9h_A*
Length = 354
Score = 30.8 bits (70), Expect = 1.3
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 148 GLRAQNDKLLDVSDMVVLEEENHMLQAEYERLRGSRTTPD 187
LR ++ D + + + + + + RLR D
Sbjct: 283 CLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDD 322
>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: k.22.1.1
Length = 40
Score = 27.2 bits (61), Expect = 1.3
Identities = 4/11 (36%), Positives = 7/11 (63%)
Query: 87 HHTETTSWDHP 97
H+ TT++ P
Sbjct: 27 HNRRTTTYIDP 37
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA
complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Length = 55
Score = 27.8 bits (62), Expect = 1.4
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 207 RQHKGRLEARMQILEDHNRQLEAQLSQLESK 237
+++ LE R+ +LE+ N+ L +L L+
Sbjct: 21 KEYVKSLENRVAVLENQNKTLIEELKALKDL 51
>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus} SCOP: k.22.1.1
Length = 49
Score = 27.3 bits (61), Expect = 1.4
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 87 HHTETTSWDHP 97
H+T TT W HP
Sbjct: 31 HNTNTTHWSHP 41
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR
{} SCOP: k.22.1.1
Length = 37
Score = 27.1 bits (61), Expect = 1.4
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 87 HHTETTSWDHPKM 99
H+T+T++W P+M
Sbjct: 23 HNTKTSTWTDPRM 35
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.7
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 15/27 (55%)
Query: 440 MHSRLEMYASRLAEVELRTRSNSTPDS 466
+ + L++YA DS
Sbjct: 25 LQASLKLYA---------------DDS 36
>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY
motif, liddle syndrome, proline-rich, ligase; NMR
{Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A
2joc_A*
Length = 50
Score = 27.2 bits (61), Expect = 1.8
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 87 HHTETTSWDHPKM 99
H+ + T W+ P+M
Sbjct: 31 HNIKKTQWEDPRM 43
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 30.3 bits (67), Expect = 1.8
Identities = 26/207 (12%), Positives = 64/207 (30%), Gaps = 20/207 (9%)
Query: 78 HKLDDLNTSHHTETTSWDHPKMIQLMNSLSELNEVRFSAYRTALKLRTVQKRLCLDLLNL 137
+ +++ + + Q+ + + N V S A + +L
Sbjct: 367 VSVQQSLAAYNQRKADLVNRSIAQMREATTLANGVLASLNLPAAIEDVSGDTVPQSILTK 426
Query: 138 VRAIEAFDTH-GLRAQNDKLLDVSDMV--VLEEENHMLQAE---YERLR---GSRTTPDP 188
R++ + +L ++ +L+E +L E LR R P
Sbjct: 427 SRSVIEQGGIQTVDQLIKELPELLQRNREILDESLRLLDEEEATDNDLRAKFKERWQRTP 486
Query: 189 SSTTTP----------DDLEMAAEA-KLLRQHKGRLEARMQILEDHNRQLEAQLSQLESK 237
S+ L+ A +A +++ + +L +L A +
Sbjct: 487 SNELYKPLRAEGTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPA 546
Query: 238 DRSSSRFIFQNLFRLIADPNRLVDQRK 264
+ L L+++ + + +R+
Sbjct: 547 KTMQGSEVVNVLKSLLSNLDEVKKERE 573
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin
ligase, protein binding, lygase,; 1.60A {Homo sapiens}
PDB: 3ny2_A 3ny1_A
Length = 75
Score = 28.0 bits (62), Expect = 1.8
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 7/41 (17%)
Query: 342 YRCLKCFNFD---MCQTCFFQGKKAKNHKL---THPMQEYC 376
Y C C +C CF ++H+ T +C
Sbjct: 18 YSCRDCAVDPTCVLCMECFLGSIH-RDHRYRMTTSGGGGFC 57
>3gpv_A Transcriptional regulator, MERR family; protein structure
initiative II(PSI II), NYSGXRC, structural genomics;
1.90A {Bacillus thuringiensis serovarkonkukian}
Length = 148
Score = 29.3 bits (66), Expect = 2.0
Identities = 7/44 (15%), Positives = 25/44 (56%)
Query: 204 KLLRQHKGRLEARMQILEDHNRQLEAQLSQLESKDRSSSRFIFQ 247
KL++Q + + +Q E + ++++ ++++ E + S++ +
Sbjct: 98 KLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSANATTKE 141
Score = 28.1 bits (63), Expect = 4.2
Identities = 2/38 (5%), Positives = 13/38 (34%)
Query: 198 EMAAEAKLLRQHKGRLEARMQILEDHNRQLEAQLSQLE 235
++ + + R+++++ + + E
Sbjct: 78 KIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTE 115
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding,
structural genomics, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 64
Score = 27.5 bits (61), Expect = 2.0
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 324 KHQAKCNIC-KECPIIGFRYRCLKCF 348
+ +C +C K + GF RC F
Sbjct: 13 QRPNRCTVCRKRVGLTGFMCRCGTTF 38
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP:
h.1.3.1
Length = 63
Score = 27.3 bits (61), Expect = 2.1
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 207 RQHKGRLEARMQILEDHNRQLEAQLSQLE 235
R + L + LE N L+ + L
Sbjct: 22 RAEQEALTGECKELEKKNEALKERADSLA 50
>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing
protein 1; MAGI1, WW domain, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1
Length = 57
Score = 27.4 bits (61), Expect = 2.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 87 HHTETTSWDHPKMIQLMNS 105
H+T+TTSW P+ + S
Sbjct: 34 HNTKTTSWLDPRCLNKQQS 52
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human
modular domain, complex, HOST interaction, ligase; NMR
{Homo sapiens} PDB: 2kq0_A 2laj_A*
Length = 49
Score = 26.9 bits (60), Expect = 2.1
Identities = 6/13 (46%), Positives = 12/13 (92%)
Query: 87 HHTETTSWDHPKM 99
H+T+TT+W+ P++
Sbjct: 32 HNTKTTTWEDPRL 44
>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain,
solution, complex, ligase/signaling protein complex;
NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB:
2op7_A
Length = 53
Score = 27.0 bits (60), Expect = 2.1
Identities = 4/11 (36%), Positives = 8/11 (72%)
Query: 87 HHTETTSWDHP 97
H+T T+++ P
Sbjct: 38 HNTRRTTFEDP 48
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka,
transcription; NMR {Oryzias latipes}
Length = 46
Score = 26.9 bits (60), Expect = 2.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 87 HHTETTSWDHPKM 99
H +TTSW P++
Sbjct: 31 HKNKTTSWLDPRL 43
>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65
mutant, structural protein; NMR {Homo sapiens} SCOP:
b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*
Length = 46
Score = 26.8 bits (60), Expect = 2.3
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 87 HHTETTSWDHPKMIQL 102
H +TT+W P+ L
Sbjct: 28 HIDQTTTWQDPRKAML 43
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 30.0 bits (68), Expect = 2.5
Identities = 13/145 (8%), Positives = 45/145 (31%), Gaps = 6/145 (4%)
Query: 97 PKMIQLMNSLSELNEV----RFSAYRTALKLRTVQKRLCLDLLNLVRAIEAFDTHGLRAQ 152
P +I+ N++ + + S ++ + + L L + + +R
Sbjct: 60 PAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESIALLLGESTTDWKQIRSIIMREN 119
Query: 153 NDKLLDVSDMVVLEEENHMLQAEYERLRGSRTTPDPSSTTTPDDLEMAAEAKLLRQHKGR 212
+ + E + + + + + + + + + +
Sbjct: 120 FI--PTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYAD 177
Query: 213 LEARMQILEDHNRQLEAQLSQLESK 237
+ R++ L + ++LE + K
Sbjct: 178 MLKRVEPLRNELQKLEDDAKDNQQK 202
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 29.9 bits (68), Expect = 2.7
Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 150 RAQNDKLLDVSDMVVLEEENHMLQAEYERLRG-----SRTTPDPSSTTTPDDLEMAAEAK 204
R + D+ ++ +E L+ + L + ++ + +
Sbjct: 60 RKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQ 119
Query: 205 LLRQHKGRLEARMQILEDHNRQLEAQLSQL 234
LR + ++ +L QLE Q
Sbjct: 120 SLRARGREIRKQLTLLYPKEAQLEEQFYLR 149
>2cjz_A Human protein tyrosine phosphatase PTPN5; protein phosphatase,
STEP, hydrolase; HET: PTR; 1.70A {Homo sapiens} PDB:
2bij_A 2bv5_A*
Length = 305
Score = 29.6 bits (67), Expect = 2.8
Identities = 6/51 (11%), Positives = 18/51 (35%)
Query: 137 LVRAIEAFDTHGLRAQNDKLLDVSDMVVLEEENHMLQAEYERLRGSRTTPD 187
++ + ++L ++ + +LQAE+ + + P
Sbjct: 7 HSSGVDLGTENLYFQSMSRVLQAEELHEKALDPFLLQAEFFEIPMNFVDPK 57
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 2.9
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 166 EEENHMLQAEYERLRGSRTTPDPSSTTTPDDLEMAAEAKLLRQHKGRLEARMQILEDHNR 225
EE+ LQ E D +S + A+ L ++ + E +++ + +NR
Sbjct: 92 EEQRKRLQ---EL--------DAASKVMEQEWREKAKKDLEEWNQRQSE-QVEKNKINNR 139
Query: 226 QLEAQ-LSQLES 236
+ Q ++
Sbjct: 140 IADKAFYQQPDA 151
Score = 28.6 bits (63), Expect = 4.1
Identities = 14/74 (18%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 168 ENHMLQAEYERLRGSRTTPDPSSTTTPDDLEMAAEAKLLRQHKGRLEARMQILEDHNRQL 227
+ L E E +R R L+ A + + + R +A+ + LE+ N++
Sbjct: 76 QADRLTQEPESIRKWREEQRK-------RLQELDAASKVMEQEWREKAK-KDLEEWNQRQ 127
Query: 228 EAQLSQLESKDRSS 241
Q+ + + +R +
Sbjct: 128 SEQVEKNKINNRIA 141
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 29.4 bits (67), Expect = 3.2
Identities = 23/108 (21%), Positives = 45/108 (41%), Gaps = 18/108 (16%)
Query: 132 LDLLNLVRA-IEAFDTHGLRAQNDKLLDVSDMVVLEEENHMLQAEYERLRGSRTTPDPSS 190
+DL +R E F +R + L D+ ++ L+ E L+ + ++ R
Sbjct: 2 VDL-KRLRQEPEVFHR-AIREKGVAL-DLEALLALDREVQELKKRLQEVQTERN------ 52
Query: 191 TTTPDDLEMAAE-AKLLRQHKGRLEARMQILEDHNRQLEAQLSQLESK 237
++A K + K L AR + L + ++LE L + E++
Sbjct: 53 -------QVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEAR 93
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha
& beta protein, PLP-dependent transferase, aminotransf
mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB:
2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Length = 425
Score = 29.2 bits (66), Expect = 3.9
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 5/48 (10%)
Query: 34 IPELREYLKKFSERLTPLQRALEDTNDQASFFSSNNILITSNSLHKLD 81
IPEL +LK+ + T ++ +TS S L
Sbjct: 80 IPELLSWLKQLQIK-----LHNPPTIHYPPSQGQMDLCVTSGSQQGLC 122
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Length = 83
Score = 27.0 bits (60), Expect = 4.4
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 206 LRQHKGRLEARMQILEDHNRQLEAQLSQLE 235
+R+ + + L+ N LE Q+ L
Sbjct: 52 MRRKNHTHQQDIDDLKRQNALLEQQVRALG 81
>1ezw_A Coenzyme F420-dependent N5,N10- methylenetetrahydromethanopterin
reductase; (beta, alpha)8 barrel, TIM barrel,
oxidoreductase; 1.65A {Methanopyrus kandleri} SCOP:
c.1.16.3
Length = 349
Score = 28.9 bits (65), Expect = 4.4
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 489 PRSPVQVMHAIDADQREELEVMISVLNPTLQTRSVTASQLAT 530
S + V+ A ++++ + NP + +TAS +AT
Sbjct: 42 NYSYMGVLTLA-AVITSKIKLGPGITNPYTRHPLITASNIAT 82
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA
complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Length = 87
Score = 26.9 bits (59), Expect = 4.8
Identities = 9/43 (20%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 207 RQHKGRLEARMQILEDHNRQLEAQLSQLESKDRSSSRFIFQNL 249
+ + ++ L N +L+ ++ QL ++ S+ R +F+ L
Sbjct: 35 KMRNLETQHKVLELTAENERLQKKVEQLS-RELSTLRNLFKQL 76
Score = 26.1 bits (57), Expect = 8.6
Identities = 9/41 (21%), Positives = 15/41 (36%)
Query: 196 DLEMAAEAKLLRQHKGRLEARMQILEDHNRQLEAQLSQLES 236
+LE + L RL+ +++ L L QL
Sbjct: 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE 78
>1zme_C Proline utilization transcription activator; complex (transcription
regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET:
DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1
h.1.3.1 PDB: 1ajy_A
Length = 70
Score = 26.6 bits (59), Expect = 5.0
Identities = 5/27 (18%), Positives = 14/27 (51%)
Query: 207 RQHKGRLEARMQILEDHNRQLEAQLSQ 233
++ +L+ + + N +L+A L +
Sbjct: 43 TKYLQQLQKDLNDKTEENNRLKALLLE 69
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI
transcription regulator, PSI-2; 1.85A {Listeria
monocytogenes str}
Length = 142
Score = 27.7 bits (62), Expect = 5.1
Identities = 8/39 (20%), Positives = 20/39 (51%)
Query: 198 EMAAEAKLLRQHKGRLEARMQILEDHNRQLEAQLSQLES 236
+ L R+ + LEAR ++L+ +L+ ++ ++
Sbjct: 64 ALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQE 102
Score = 27.3 bits (61), Expect = 7.7
Identities = 5/36 (13%), Positives = 21/36 (58%)
Query: 204 KLLRQHKGRLEARMQILEDHNRQLEAQLSQLESKDR 239
+LL++ + L+ R+ ++++ +L+ ++ ++
Sbjct: 84 ELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLI 119
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase;
1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Length = 129
Score = 27.3 bits (60), Expect = 6.1
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 332 CKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTH 370
C +C + + L + +C +F G NH + H
Sbjct: 37 CSKCDMRENLWLNLTDGSI-LCGRRYFDGSGGNNHAVEH 74
>1r8d_A Transcription activator MTAN; protein-DNA complex,
transcription/DNA complex; 2.70A {Bacillus subtilis}
SCOP: a.6.1.3 PDB: 1jbg_A
Length = 109
Score = 26.8 bits (60), Expect = 7.1
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 196 DLEMAAEAKLLRQHKGRLEARMQILEDHNRQLEAQLSQLE 235
D L+ K L + Q +++ + ++ L ++
Sbjct: 70 DHPNFDRKAALQSQKEILMKKKQRMDEMIQTIDRTLLSVD 109
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 28.3 bits (62), Expect = 8.8
Identities = 39/233 (16%), Positives = 80/233 (34%), Gaps = 21/233 (9%)
Query: 5 QKSLDDLSNRLSAAE----SVKNTWTSVSDASQIPELREYLKKFSERLTPLQRALEDTND 60
+K+ DL L E V+ S S E + + + L + +
Sbjct: 353 KKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDA 412
Query: 61 QASFFSSNNILITSNSLHKLDDLNTSHHTETTSWDHPKMIQLMNSLSELNEVRFSAYRTA 120
+A ++ N I KL+ ++ + S+D K + N+ A T
Sbjct: 413 RAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFK--------NGKNKDFSKAEETL 464
Query: 121 LKLRTVQKRLCLDLLNLVRAIEAFDTHGLRAQNDKLLDVSDMVVLEEENHMLQAEYERLR 180
L+ K L ++ + +E + +N K D + + L+ + +
Sbjct: 465 KALKGSVKDLGINP-EWISKVENLNAALNEFKNGK---NKDFSKVTQAKSDLENSVKDVI 520
Query: 181 GSRTTPDPSSTTTPDDLEMAAEAKLLRQHKGRLEARMQILEDHNRQLEAQLSQ 233
++ T D+L A R+E + L++ +++ AQ +Q
Sbjct: 521 INQKV-----TDKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQ 568
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint
center for structural genomics, JCSG; 2.60A {Deinococcus
geothermalis dsm 11300}
Length = 423
Score = 28.1 bits (63), Expect = 8.9
Identities = 14/81 (17%), Positives = 24/81 (29%), Gaps = 12/81 (14%)
Query: 10 DLSNRLSAAESVKNTWTSVSDASQ-------IPELREYLKKFSERLTPLQRALEDTNDQA 62
DLSN L ++ D +P R + + + L N
Sbjct: 41 DLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYLD--VKAENVLVWNN--- 95
Query: 63 SFFSSNNILITSNSLHKLDDL 83
S +++T LH +
Sbjct: 96 SSLELQGLVLTFALLHGVRGS 116
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.9 bits (61), Expect = 9.0
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 165 LEEENHMLQAEYERLRGSRTTPDPSSTTTPDDLEMAAEAKLLRQHKGRLEARMQILEDHN 224
E ++ + D E + + Q K LEA+ + LE+
Sbjct: 324 RREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRH-EQMKKNLEAQHKELEEKR 382
Query: 225 RQLEAQLSQLESKDRSSSR 243
RQ E + + E++ R +
Sbjct: 383 RQFEDEKANWEAQQRILEQ 401
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.131 0.381
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,984,201
Number of extensions: 471553
Number of successful extensions: 1490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1454
Number of HSP's successfully gapped: 100
Length of query: 547
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 449
Effective length of database: 3,965,535
Effective search space: 1780525215
Effective search space used: 1780525215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.5 bits)