RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3216
(547 letters)
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 122 bits (307), Expect = 5e-34
Identities = 51/89 (57%), Positives = 61/89 (68%), Gaps = 15/89 (16%)
Query: 249 LFRLIADPNRLVDQRKLGLLLHDCIQLPRQLGEVASFGGSNIEPSA-------------- 294
LF+ +A DQR+LGLLLHD IQ+PRQLGEVASFGGSNIEPS
Sbjct: 9 LFKQVASSTGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIE 68
Query: 295 -VHFLSWLQQEPQSIVWLPVLHRLSAAES 322
FL W++ EPQS+VWLPVLHR++AAE+
Sbjct: 69 AALFLDWMRLEPQSMVWLPVLHRVAAAET 97
>d1eg3a1 a.39.1.7 (A:85-209) Dystrophin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 125
Score = 97.1 bits (242), Expect = 9e-25
Identities = 43/90 (47%), Positives = 57/90 (63%), Gaps = 7/90 (7%)
Query: 96 HPKMIQLMNSLSELNEVRFSAYRTALKLRTVQKRLCLDLLNLVRAIEAFDTHGLRAQNDK 155
HPKM +L SL++LN VRFSAYRTA+KLR +QK LCLDLL+L A +A D H L+ QND+
Sbjct: 1 HPKMTELYQSLADLNNVRFSAYRTAMKLRRLQKALCLDLLSLSAACDALDQHNLK-QNDQ 59
Query: 156 LLDVSDMVVLEEENHMLQAEYERLRGSRTT 185
+D+ ++ L Y+RL
Sbjct: 60 PMDILQIINC------LTTIYDRLEQEHNN 83
>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein 3,
ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 69
Score = 67.8 bits (165), Expect = 5e-15
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 318 SAAESAKHQA-KCNICKECPIIGFRYRCLKC---FNFDMCQTCFFQGKKAKNHKLTHPMQ 373
+ + +H KC+ C PI G R+ C C + D C +C + HK H ++
Sbjct: 5 AESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLE 64
>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein 2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 65.4 bits (159), Expect = 5e-14
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 323 AKHQA-KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQ 373
KH CN CK+ PI G Y+C +C + +CQ CF L+H
Sbjct: 20 DKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECF-----DSYCHLSHTFT 66
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 52
Score = 57.5 bits (139), Expect = 1e-11
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 329 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYC 376
CN CK + R+ C C ++D+C C+ K+H TH M ++
Sbjct: 9 CNECKH--HVETRWHCTVCEDYDLCINCY----NTKSH--THKMVKWG 48
>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein
2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 46
Score = 31.4 bits (71), Expect = 0.020
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 6/41 (14%)
Query: 327 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHK 367
C C + RY C +C C+ + H
Sbjct: 5 GPCGFCPAGEVQPARYTCPRCNAPYCSLRCY------RTHG 39
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 29.5 bits (66), Expect = 0.20
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 186 PDPSSTTTPDDLEMAAE-AKLLRQHKGRLEARMQILEDHNRQLEAQLSQLES 236
+ L+ A ++ + +L + +L QL+ +L QL
Sbjct: 36 ENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGG 87
>d1hcia1 a.7.1.1 (A:272-396) alpha-actinin {Human (Homo sapiens)
[TaxId: 9606]}
Length = 125
Score = 30.2 bits (68), Expect = 0.22
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 168 ENHMLQAEYERLRGS------RTTPDPSSTTTPDDLEMAAEAKLLRQHKGRLEARMQILE 221
EN L EYERL RT P + T ++ A + KL R + + ++
Sbjct: 7 ENERLMEEYERLASELLEWIRRTIPWLENRTPEKTMQ-AMQKKLEDFRDYRRKHKPPKVQ 65
Query: 222 DHNRQLEAQLSQLESKDRSSSRFIF 246
+ + LE + L++K R S+R F
Sbjct: 66 EKCQ-LEINFNTLQTKLRISNRPAF 89
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 31.0 bits (69), Expect = 0.33
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 9/49 (18%)
Query: 6 KSLDDLSNRLSAAESVKNTWTSVSDASQIPELREYLKKFSERLTPLQRA 54
+ L +L A + K+ D +L YLK ++ R TPL A
Sbjct: 17 EPLKELEK---AYKRFKD------DEEFNRQLNYYLKTWAGRPTPLYYA 56
>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 45
Score = 27.4 bits (61), Expect = 0.46
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 87 HHTETTSWDHPKM 99
H TT W+ P+
Sbjct: 32 HKNRTTQWEDPRT 44
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain
{fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 33
Score = 26.9 bits (60), Expect = 0.49
Identities = 4/12 (33%), Positives = 9/12 (75%)
Query: 87 HHTETTSWDHPK 98
H+T T+++ P+
Sbjct: 22 HNTRRTTFEDPR 33
>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 50
Score = 27.4 bits (61), Expect = 0.52
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 87 HHTETTSWDHPKM 99
H+ + T W+ P+M
Sbjct: 31 HNIKKTQWEDPRM 43
>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal hydrolase
5, UBP5 {Human (Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 28.8 bits (64), Expect = 0.66
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 332 CKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQ-EYC------TTTTSGED 384
C +C + + L + +C +F G NH + H + Y T T G D
Sbjct: 27 CSKCDMRENLWLNLTDGSI-LCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPDGAD 85
Query: 385 VRDFTRALRNKFKSKRYFKKH 405
V + + +H
Sbjct: 86 VYSYD---EDDMVLDPSLAEH 103
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit
{Salmonella typhimurium [TaxId: 90371]}
Length = 390
Score = 29.8 bits (66), Expect = 0.84
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 29 SDASQIPELREYLKKFSERLTPLQRA 54
D + + LK ++ R T L +
Sbjct: 36 KDPEFQAQFADLLKNYAGRPTALTKC 61
>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 46
Score = 26.6 bits (59), Expect = 1.1
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 87 HHTETTSWDHPKM 99
H +TT+W P+
Sbjct: 28 HIDQTTTWQDPRK 40
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 80
Score = 26.7 bits (58), Expect = 2.0
Identities = 8/80 (10%), Positives = 19/80 (23%), Gaps = 12/80 (15%)
Query: 329 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTTTSGEDVRDF 388
I E R C+ + + H T + ++
Sbjct: 10 GKISFEL----MREPCITPSGITYDRKDIEE------HLQRVGHFNPVTRSPLTQEQLIP 59
Query: 389 TRALRNKFKSKRYFKKHPRV 408
A++ + ++ V
Sbjct: 60 NLAMKE--VIDAFISENGWV 77
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 74
Score = 25.6 bits (56), Expect = 4.0
Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 328 KCNIC-KECPIIGFRYRCLKCF 348
+C +C K+ + GF RC F
Sbjct: 27 RCFMCRKKVGLTGFDCRCGNLF 48
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 25.2 bits (55), Expect = 5.6
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 186 PDPSSTTTPDDLEMAAE-AKLLRQHKGRLEARMQILEDHNRQLEAQLSQ 233
PD S TT L A K L + ++ L+ R L+ QL +
Sbjct: 31 PDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79
>d2chca1 d.17.4.25 (A:1-167) Uncharacterized protein Rv3472
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 167
Score = 25.9 bits (56), Expect = 8.9
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 178 RLRGSRTTPDPSSTTTPDDLEMAAEAKLLRQHKGRLEARM 217
RLR R DPS D ++AA L RL +M
Sbjct: 126 RLRNDRLVSDPSVAVNVADADVAAVVGHLLAAARRLGTQM 165
>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 381
Score = 26.5 bits (58), Expect = 9.6
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 14/71 (19%)
Query: 51 LQRALEDTNDQASFFSSNNILITSNSLHKLDDLNTSHHTETTSWDH-----PKMIQLMNS 105
++ +A + +N +LI DD +TE WD ++ + +NS
Sbjct: 285 SDLLVDQWKKKAELYRTNVLLIPLG-----DDFRFKQNTE---WDVQRVNYERLFEHINS 336
Query: 106 LSELN-EVRFS 115
+ N + +F
Sbjct: 337 QAHFNVQAQFG 347
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.131 0.381
Gapped
Lambda K H
0.267 0.0690 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,920,275
Number of extensions: 88185
Number of successful extensions: 369
Number of sequences better than 10.0: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 29
Length of query: 547
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 457
Effective length of database: 1,171,896
Effective search space: 535556472
Effective search space used: 535556472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)