BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3219
         (102 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2E5R|A Chain A, Solution Structure Of The Zz Domain Of Dystrobrevin
          Alpha (Dystrobrevin-Alpha)
          Length = 63

 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 36 SAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY 93
          S +    H  +C+ C    ++GFRYRC +C N+ +CQ CF++G    +H   H M+EY
Sbjct: 3  SGSSGVFHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEY 60


>pdb|1EG3|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
           With A Beta-Dystroglycan Peptide
 pdb|1EG4|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
           With A Beta-Dystroglycan Peptide
          Length = 261

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/30 (63%), Positives = 26/30 (86%)

Query: 11  QAVHFLSWLQQEPQSIVWLPVLHRLSAAES 40
           +A  FL W++ EPQS+VWLPVLHR++AAE+
Sbjct: 232 EAALFLDWMRLEPQSMVWLPVLHRVAAAET 261


>pdb|2DIP|A Chain A, Solution Structure Of The Zz Domain Of Zinc Finger Swim
          Domain Containing Protein 2
          Length = 98

 Score = 34.7 bits (78), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCF 75
          CN CK+ PI G  Y+C +C  + +CQ CF
Sbjct: 34 CNNCKQFPIEGKCYKCTECIEYHLCQECF 62


>pdb|2FC7|A Chain A, Solution Structure Of The Zz Domain Of Zzz3 Protein
          Length = 82

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 46 KCNICKECPIIGFRYRCLKC---FNFDMCQTCFFQGKKAKNHKLTHPMQ 91
          KC+ C   PI G R+ C  C    + D C +C     +   HK  H ++
Sbjct: 23 KCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLE 71


>pdb|2OOL|A Chain A, Crystal Structure Of The Chromophore-Binding Domain Of
          An Unusual Bacteriophytochrome Rpbphp3 From R.
          Palustris
 pdb|2OOL|B Chain B, Crystal Structure Of The Chromophore-Binding Domain Of
          An Unusual Bacteriophytochrome Rpbphp3 From R.
          Palustris
          Length = 337

 Score = 26.9 bits (58), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 18/24 (75%)

Query: 19 LQQEPQSIVWLPVLHRLSAAESAK 42
          L+Q P S++ +P+ H L+AA +A+
Sbjct: 66 LRQPPASLLNVPIAHYLTAASAAR 89


>pdb|1BVQ|A Chain A, Three-Dimensional Structure Of 4-Hydroxybenzoyl Coa
          Thioesterase From Pseudomonas Sp. Strain Cbs-3.
 pdb|1LO7|A Chain A, X-Ray Structure Of 4-Hydroxybenzoyl Coa Thioesterase
          Complexed With 4-Hydroxyphenacyl Coa
 pdb|1LO8|A Chain A, X-Ray Crystal Structure Of 4-Hydroxybenzoyl Coa
          Thioesterase Complexed With 4-Hydroxybenzyl Coa
          Length = 141

 Score = 25.8 bits (55), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 22 EPQSIVWLPVLHRLSAAESAKHQAKCNI 49
          +P  IVW P  HR   A S  +  KC +
Sbjct: 17 DPAGIVWYPNYHRWLDAASRNYFIKCGL 44


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.137    0.477 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,136,791
Number of Sequences: 62578
Number of extensions: 101131
Number of successful extensions: 309
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 8
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)