BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3219
(102 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=Drosophila melanogaster GN=Dys PE=1
SV=3
Length = 3598
Score = 164 bits (415), Expect = 1e-40, Method: Composition-based stats.
Identities = 71/83 (85%), Positives = 76/83 (91%)
Query: 14 HFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQT 73
HFL WLQ EPQS+VWLPVLHRL+AAE+AKHQAKCNICKE PI+GFRYRCLKCFNFDMCQ
Sbjct: 3079 HFLGWLQHEPQSLVWLPVLHRLAAAEAAKHQAKCNICKEYPIVGFRYRCLKCFNFDMCQK 3138
Query: 74 CFFQGKKAKNHKLTHPMQEYCTT 96
CFF G+ AKNHKLTHPM EYCTT
Sbjct: 3139 CFFFGRNAKNHKLTHPMHEYCTT 3161
>sp|Q0KI50|DMDD_DROME Dystrophin, isoform D OS=Drosophila melanogaster GN=Dys PE=1 SV=1
Length = 1854
Score = 162 bits (409), Expect = 7e-40, Method: Composition-based stats.
Identities = 71/83 (85%), Positives = 76/83 (91%)
Query: 14 HFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQT 73
HFL WLQ EPQS+VWLPVLHRL+AAE+AKHQAKCNICKE PI+GFRYRCLKCFNFDMCQ
Sbjct: 1436 HFLGWLQHEPQSLVWLPVLHRLAAAEAAKHQAKCNICKEYPIVGFRYRCLKCFNFDMCQK 1495
Query: 74 CFFQGKKAKNHKLTHPMQEYCTT 96
CFF G+ AKNHKLTHPM EYCTT
Sbjct: 1496 CFFFGRNAKNHKLTHPMHEYCTT 1518
>sp|Q9VDW3|DMDB_DROME Dystrophin, isoform B OS=Drosophila melanogaster GN=Dys PE=1 SV=3
Length = 1669
Score = 160 bits (406), Expect = 2e-39, Method: Composition-based stats.
Identities = 71/83 (85%), Positives = 76/83 (91%)
Query: 14 HFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQT 73
HFL WLQ EPQS+VWLPVLHRL+AAE+AKHQAKCNICKE PI+GFRYRCLKCFNFDMCQ
Sbjct: 1251 HFLGWLQHEPQSLVWLPVLHRLAAAEAAKHQAKCNICKEYPIVGFRYRCLKCFNFDMCQK 1310
Query: 74 CFFQGKKAKNHKLTHPMQEYCTT 96
CFF G+ AKNHKLTHPM EYCTT
Sbjct: 1311 CFFFGRNAKNHKLTHPMHEYCTT 1333
>sp|Q7YU29|DMDE_DROME Dystrophin, isoform E OS=Drosophila melanogaster GN=Dys PE=1 SV=1
Length = 1051
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 71/83 (85%), Positives = 76/83 (91%)
Query: 14 HFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQT 73
HFL WLQ EPQS+VWLPVLHRL+AAE+AKHQAKCNICKE PI+GFRYRCLKCFNFDMCQ
Sbjct: 633 HFLGWLQHEPQSLVWLPVLHRLAAAEAAKHQAKCNICKEYPIVGFRYRCLKCFNFDMCQK 692
Query: 74 CFFQGKKAKNHKLTHPMQEYCTT 96
CFF G+ AKNHKLTHPM EYCTT
Sbjct: 693 CFFFGRNAKNHKLTHPMHEYCTT 715
>sp|P11533|DMD_CHICK Dystrophin OS=Gallus gallus GN=DMD PE=2 SV=1
Length = 3660
Score = 146 bits (369), Expect = 3e-35, Method: Composition-based stats.
Identities = 61/85 (71%), Positives = 74/85 (87%)
Query: 11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
+A FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct: 3274 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 3333
Query: 71 CQTCFFQGKKAKNHKLTHPMQEYCT 95
CQ+CFF G+ AK HK+ +PM EYCT
Sbjct: 3334 CQSCFFSGRVAKGHKMHYPMVEYCT 3358
>sp|O97592|DMD_CANFA Dystrophin OS=Canis familiaris GN=DMD PE=2 SV=1
Length = 3680
Score = 146 bits (369), Expect = 3e-35, Method: Composition-based stats.
Identities = 61/85 (71%), Positives = 74/85 (87%)
Query: 11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
+A FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct: 3272 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 3331
Query: 71 CQTCFFQGKKAKNHKLTHPMQEYCT 95
CQ+CFF G+ AK HK+ +PM EYCT
Sbjct: 3332 CQSCFFSGRVAKGHKMHYPMVEYCT 3356
>sp|Q5GN48|DMD_PIG Dystrophin OS=Sus scrofa GN=DMD PE=1 SV=1
Length = 3674
Score = 146 bits (369), Expect = 3e-35, Method: Composition-based stats.
Identities = 61/85 (71%), Positives = 74/85 (87%)
Query: 11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
+A FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct: 3266 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 3325
Query: 71 CQTCFFQGKKAKNHKLTHPMQEYCT 95
CQ+CFF G+ AK HK+ +PM EYCT
Sbjct: 3326 CQSCFFSGRVAKGHKMHYPMVEYCT 3350
>sp|P11531|DMD_MOUSE Dystrophin OS=Mus musculus GN=Dmd PE=1 SV=3
Length = 3678
Score = 146 bits (369), Expect = 3e-35, Method: Composition-based stats.
Identities = 61/85 (71%), Positives = 74/85 (87%)
Query: 11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
+A FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct: 3270 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 3329
Query: 71 CQTCFFQGKKAKNHKLTHPMQEYCT 95
CQ+CFF G+ AK HK+ +PM EYCT
Sbjct: 3330 CQSCFFSGRVAKGHKMHYPMVEYCT 3354
>sp|P11532|DMD_HUMAN Dystrophin OS=Homo sapiens GN=DMD PE=1 SV=3
Length = 3685
Score = 146 bits (368), Expect = 4e-35, Method: Composition-based stats.
Identities = 61/85 (71%), Positives = 74/85 (87%)
Query: 11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
+A FL W++ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPIIGFRYR LK FN+D+
Sbjct: 3277 EAALFLDWMRLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDI 3336
Query: 71 CQTCFFQGKKAKNHKLTHPMQEYCT 95
CQ+CFF G+ AK HK+ +PM EYCT
Sbjct: 3337 CQSCFFSGRVAKGHKMHYPMVEYCT 3361
>sp|P46939|UTRO_HUMAN Utrophin OS=Homo sapiens GN=UTRN PE=1 SV=2
Length = 3433
Score = 145 bits (366), Expect = 7e-35, Method: Composition-based stats.
Identities = 58/80 (72%), Positives = 70/80 (87%)
Query: 15 FLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTC 74
F+ W+ EPQS+VWLPVLHR++AAE+AKHQAKCNICKECPI+GFRYR LK FN+D+CQ+C
Sbjct: 3038 FIDWMHLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIVGFRYRSLKHFNYDVCQSC 3097
Query: 75 FFQGKKAKNHKLTHPMQEYC 94
FF G+ AK HKL +PM EYC
Sbjct: 3098 FFSGRTAKGHKLHYPMVEYC 3117
>sp|Q9TW65|DMD_CAEEL Dystrophin-1 OS=Caenorhabditis elegans GN=dys-1 PE=1 SV=2
Length = 3674
Score = 134 bits (336), Expect = 2e-31, Method: Composition-based stats.
Identities = 51/80 (63%), Positives = 63/80 (78%)
Query: 15 FLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTC 74
F+ W+++EPQSIVWL V+HRL +ES KH +KCN+CK PIIG RYRCL CFN D+CQ C
Sbjct: 3274 FIDWVKKEPQSIVWLAVMHRLVISESTKHASKCNVCKMFPIIGIRYRCLTCFNCDLCQNC 3333
Query: 75 FFQGKKAKNHKLTHPMQEYC 94
FF + AK+H+ HPMQEYC
Sbjct: 3334 FFSQRTAKSHRTNHPMQEYC 3353
>sp|Q9EPA0|DRP2_RAT Dystrophin-related protein 2 OS=Rattus norvegicus GN=Drp2 PE=1 SV=1
Length = 957
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 64/85 (75%)
Query: 11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
+A FL W+ EPQS+VWL VLHR++ AE KHQ KC+IC++CPI GFRYR LK FN D+
Sbjct: 574 EASQFLEWVNLEPQSMVWLAVLHRVTVAEQVKHQTKCSICRQCPIKGFRYRSLKQFNVDI 633
Query: 71 CQTCFFQGKKAKNHKLTHPMQEYCT 95
CQTCF G+ +K +KL +P+ EY T
Sbjct: 634 CQTCFLTGRASKGNKLHYPIMEYYT 658
>sp|Q13474|DRP2_HUMAN Dystrophin-related protein 2 OS=Homo sapiens GN=DRP2 PE=2 SV=2
Length = 957
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 64/85 (75%)
Query: 11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
+A FL W+ EPQS+VWL VLHR++ AE KHQ KC+IC++CPI GFRYR LK FN D+
Sbjct: 574 EASQFLEWVNLEPQSMVWLAVLHRVTIAEQVKHQTKCSICRQCPIKGFRYRSLKQFNVDI 633
Query: 71 CQTCFFQGKKAKNHKLTHPMQEYCT 95
CQTCF G+ +K +KL +P+ EY T
Sbjct: 634 CQTCFLTGRASKGNKLHYPIMEYYT 658
>sp|Q05AA6|DRP2_MOUSE Dystrophin-related protein 2 OS=Mus musculus GN=Drp2 PE=1 SV=1
Length = 957
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/85 (58%), Positives = 64/85 (75%)
Query: 11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDM 70
+A FL W+ EPQS+VWL VLHR++ AE KHQ KC+IC++CPI GFRYR LK FN D+
Sbjct: 574 EASQFLEWVNLEPQSMVWLAVLHRVTIAEQVKHQTKCSICRQCPIKGFRYRSLKQFNVDI 633
Query: 71 CQTCFFQGKKAKNHKLTHPMQEYCT 95
CQTCF G+ +K +KL +P+ EY T
Sbjct: 634 CQTCFLTGRASKGNKLHYPIMEYYT 658
>sp|A2CJ06|DYTN_HUMAN Dystrotelin OS=Homo sapiens GN=DYTN PE=2 SV=1
Length = 578
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 45/80 (56%), Positives = 58/80 (72%)
Query: 15 FLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTC 74
FLSW+Q EP ++WLP HRLSAAE H A+C +C+ PI G RYRCLKC NFD+CQ C
Sbjct: 196 FLSWVQSEPPILLWLPTCHRLSAAERVTHPARCTLCRTFPITGLRYRCLKCLNFDICQMC 255
Query: 75 FFQGKKAKNHKLTHPMQEYC 94
F G +K+H+ +HP+ E+C
Sbjct: 256 FLSGLHSKSHQKSHPVIEHC 275
>sp|A2CI97|DYTN_DANRE Dystrotelin OS=Danio rerio GN=dytn PE=2 SV=1
Length = 648
Score = 103 bits (258), Expect = 3e-22, Method: Composition-based stats.
Identities = 39/82 (47%), Positives = 58/82 (70%)
Query: 14 HFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQT 73
HF+ WLQ EP+ ++WL L+R+S +E+ +H+ C+ CK PI G RYRCLKC N +CQ+
Sbjct: 195 HFIWWLQSEPRLLLWLSTLYRISVSEAVQHRVHCHACKAFPITGLRYRCLKCLNVHLCQS 254
Query: 74 CFFQGKKAKNHKLTHPMQEYCT 95
CF ++++ HK +H + EYCT
Sbjct: 255 CFLTERRSRKHKPSHSVLEYCT 276
>sp|A2CI98|DYTN_MOUSE Dystrotelin OS=Mus musculus GN=Dytn PE=2 SV=1
Length = 653
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 54/80 (67%)
Query: 15 FLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTC 74
FLSW Q EP ++WLP +RLSAAE+ H +C++C+ PIIG RY CLKC +FD+C+ C
Sbjct: 196 FLSWAQSEPLVLLWLPTCYRLSAAETVTHPVRCSVCRTFPIIGLRYHCLKCLDFDICELC 255
Query: 75 FFQGKKAKNHKLTHPMQEYC 94
F G +H+ +H + E C
Sbjct: 256 FLSGLHKNSHEKSHTVMEEC 275
>sp|Q9Y048|DTN1_CAEEL Dystrobrevin-1 OS=Caenorhabditis elegans GN=dyb-1 PE=1 SV=1
Length = 590
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/73 (39%), Positives = 49/73 (67%)
Query: 23 PQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAK 82
P I+WLP+LHR+++ + H C+ C+ GFRY+C +C N+ +CQ+CF++G+ ++
Sbjct: 240 PPCIMWLPLLHRMASVSNVYHPVVCDACQVRSFTGFRYKCQRCANYQLCQSCFWRGRTSQ 299
Query: 83 NHKLTHPMQEYCT 95
NH H M+EY +
Sbjct: 300 NHSNEHEMKEYSS 312
>sp|Q9Y4J8|DTNA_HUMAN Dystrobrevin alpha OS=Homo sapiens GN=DTNA PE=1 SV=2
Length = 743
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 15 FLSWLQQEP--QSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQ 72
FL L +P Q +VWLP+LHRL+ E+ H +C+ C ++GFRYRC +C N+ +CQ
Sbjct: 209 FLDTLMSDPPPQCLVWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQLCQ 268
Query: 73 TCFFQGKKAKNHKLTHPMQEYCT 95
CF++G +H H M+EY +
Sbjct: 269 DCFWRGHAGGSHSNQHQMKEYTS 291
>sp|Q9D2N4|DTNA_MOUSE Dystrobrevin alpha OS=Mus musculus GN=Dtna PE=1 SV=2
Length = 746
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 15 FLSWLQQEP--QSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQ 72
FL L +P Q +VWLP+LHRL+ E+ H +C+ C ++GFRYRC +C N+ +CQ
Sbjct: 209 FLDTLMSDPPPQCLVWLPLLHRLANVENVFHPVECSYCHSESMMGFRYRCQQCHNYQLCQ 268
Query: 73 TCFFQGKKAKNHKLTHPMQEYCT 95
CF++G +H H M+EY +
Sbjct: 269 DCFWRGHAGGSHSNQHQMKEYTS 291
>sp|O60941|DTNB_HUMAN Dystrobrevin beta OS=Homo sapiens GN=DTNB PE=1 SV=1
Length = 627
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 23 PQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAK 82
PQ +VWLP++HRL+ E+ H +C+ C+ ++GFRYRC +C N+ +CQ CF++G
Sbjct: 219 PQCLVWLPLMHRLAHVENVFHPVECSYCRCESMMGFRYRCQQCHNYQLCQNCFWRGHAGG 278
Query: 83 NHKLTHPMQEYCT 95
H H M+E+ +
Sbjct: 279 PHSNQHQMKEHSS 291
>sp|O70585|DTNB_MOUSE Dystrobrevin beta OS=Mus musculus GN=Dtnb PE=1 SV=3
Length = 659
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 48/73 (65%)
Query: 23 PQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAK 82
PQ +VWLP++HRL+ E+ H +C+ C ++GFRYRC +C N+ +CQ CF++G +
Sbjct: 219 PQCLVWLPLMHRLAHVENVFHPVECSYCHCESMMGFRYRCQQCHNYQLCQNCFWRGHASG 278
Query: 83 NHKLTHPMQEYCT 95
H H M+E+ +
Sbjct: 279 AHSNQHQMKEHSS 291
>sp|P84060|DTNB_RAT Dystrobrevin beta OS=Rattus norvegicus GN=Dtnb PE=2 SV=2
Length = 654
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 46/73 (63%)
Query: 23 PQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAK 82
PQ +VWLP++HRL+ E+ H +C+ C ++GFRYRC +C N+ +CQ CF++G
Sbjct: 219 PQCLVWLPLMHRLAHVENVFHPVECSYCHCESMMGFRYRCQQCHNYQLCQNCFWRGHAGG 278
Query: 83 NHKLTHPMQEYCT 95
H H M+E +
Sbjct: 279 PHSNQHQMKELSS 291
>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1
Length = 1030
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Query: 36 SAAESAKHQAK-CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNH---KLTHPMQ 91
SA KH C+ C++ PIIG R++C +C N+D+C TC+ K H ++T P
Sbjct: 73 SAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTTCYHGDKHHLRHRFYRITTPGS 132
Query: 92 E 92
E
Sbjct: 133 E 133
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3
Length = 4836
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 23 PQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAK 82
PQ W +L + S C+ C+ PI G R++C C +FD C+TCF K K
Sbjct: 2685 PQQSHWTGLLSEMELVPSIHPGVTCDGCQTFPINGSRFKCRNCDDFDFCETCF----KTK 2740
Query: 83 NHKLTH 88
H H
Sbjct: 2741 KHNTRH 2746
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2
Length = 4834
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 23 PQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAK 82
PQ W +L + S C+ C+ PI G R++C C +FD C+TCF K K
Sbjct: 2684 PQQSHWTGLLSEMELVPSIHPGVTCDGCQMFPINGSRFKCRNCDDFDFCETCF----KTK 2739
Query: 83 NHKLTH 88
H H
Sbjct: 2740 KHNTRH 2745
>sp|Q9VUX2|MIB_DROME E3 ubiquitin-protein ligase mind-bomb OS=Drosophila melanogaster
GN=mib1 PE=1 SV=3
Length = 1226
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 36 SAAESAKHQAK-CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKL 86
SA KH+ C+ C++ PI G R++C +C N+D+C C+ K H+
Sbjct: 167 SAPTGVKHEGTMCDTCRQQPIFGIRWKCAECINYDLCSICYHGDKHHLRHRF 218
>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1
Length = 1006
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 36 SAAESAKHQAK-CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNH---KLTHPMQ 91
SA KH C+ C++ PIIG R++C +C N+D+C C+ K H ++T P
Sbjct: 73 SAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLRHRFYRITTPGS 132
Query: 92 E 92
E
Sbjct: 133 E 133
>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2
SV=1
Length = 1011
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 36 SAAESAKHQAK-CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNH---KLTHPMQ 91
SA KH C+ C++ PIIG R++C +C N+D+C C+ K H ++T P
Sbjct: 73 SAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLRHRFYRITTPGS 132
Query: 92 E 92
E
Sbjct: 133 E 133
>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1
Length = 1006
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 4/61 (6%)
Query: 36 SAAESAKHQAK-CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNH---KLTHPMQ 91
SA KH C+ C++ PIIG R++C +C N+D+C C+ K H ++T P
Sbjct: 73 SAPTGIKHDGTMCDTCRQQPIIGIRWKCAECTNYDLCTVCYHGDKHHLRHRFYRITTPGS 132
Query: 92 E 92
E
Sbjct: 133 E 133
>sp|Q6GPB6|KCMF1_XENLA E3 ubiquitin-protein ligase KCMF1 OS=Xenopus laevis GN=kcmf1 PE=2
SV=1
Length = 381
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 41 AKHQA-KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQ 91
++H+ C+ C + G RY+CL C+++D+C +C+ G H HPMQ
Sbjct: 2 SRHEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYESGATTTRHTTDHPMQ 53
>sp|Q8R516|MIB2_MOUSE E3 ubiquitin-protein ligase MIB2 OS=Mus musculus GN=Mib2 PE=1 SV=2
Length = 973
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTELLP 100
C+ CK+ + G R++C CF++D+C C+ K H LTH + Y T+ P
Sbjct: 91 CDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNK----HDLTHAFERYETSHSRP 140
>sp|Q68LP1|MIB2_RAT E3 ubiquitin-protein ligase MIB2 OS=Rattus norvegicus GN=Mib2 PE=2
SV=2
Length = 971
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTELLP 100
C+ CK+ + G R++C CF++D+C C+ K H LTH + Y T+ P
Sbjct: 91 CDCCKKHGLRGMRWKCRVCFDYDLCTQCYMHNK----HDLTHAFERYETSHSRP 140
>sp|Q9P0J7|KCMF1_HUMAN E3 ubiquitin-protein ligase KCMF1 OS=Homo sapiens GN=KCMF1 PE=1
SV=2
Length = 381
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 41 AKHQA-KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQ 91
++H+ C+ C + G RY+CL C+++D+C +C+ G H HPMQ
Sbjct: 2 SRHEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYESGATTTRHTTDHPMQ 53
>sp|Q7T321|KCMF1_DANRE E3 ubiquitin-protein ligase KCMF1 OS=Danio rerio GN=kcmf1 PE=2
SV=1
Length = 383
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 41 AKHQA-KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQ 91
++H+ C+ C + G RY+CL C+++D+C +C+ G H HPMQ
Sbjct: 2 SRHEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYESGATTTRHTTEHPMQ 53
>sp|Q1LZE1|KCMF1_BOVIN E3 ubiquitin-protein ligase KCMF1 OS=Bos taurus GN=KCMF1 PE=2
SV=1
Length = 381
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 41 AKHQA-KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQ 91
++H+ C+ C + G RY+CL C+++D+C +C+ G H HPMQ
Sbjct: 2 SRHEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYESGATTTRHTTDHPMQ 53
>sp|Q80UY2|KCMF1_MOUSE E3 ubiquitin-protein ligase KCMF1 OS=Mus musculus GN=Kcmf1 PE=2
SV=1
Length = 381
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 41 AKHQA-KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQ 91
++H+ C+ C + G RY+CL C+++D+C +C+ G H HPMQ
Sbjct: 2 SRHEGVSCDACLKGNFRGRRYKCLICYDYDLCASCYESGATTTRHTTDHPMQ 53
>sp|Q24629|REF2P_DROSI Protein ref(2)P OS=Drosophila simulans GN=ref(2)P PE=4 SV=1
Length = 599
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 46 KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHP 89
+C+ C P+IGFRY+C++C NFD+CQ C K ++ L P
Sbjct: 126 QCDGCGLAPLIGFRYKCVQCSNFDLCQKCESAHKHPEHLMLRMP 169
>sp|P14199|REF2P_DROME Protein ref(2)P OS=Drosophila melanogaster GN=ref(2)P PE=1 SV=2
Length = 599
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 46 KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHP 89
+C+ C P+IGFRY+C++C N+D+CQ C K ++ L P
Sbjct: 126 ECDGCGLAPLIGFRYKCVQCSNYDLCQKCELAHKHPEHLMLRMP 169
>sp|Q5ZIJ9|MIB2_CHICK E3 ubiquitin-protein ligase MIB2 OS=Gallus gallus GN=MIB2 PE=2 SV=1
Length = 954
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTELLP 100
C+ CK+ I G R++C CF++D+C C+ K H L+H + Y T P
Sbjct: 91 CDCCKKHGIRGMRWKCKMCFDYDLCTQCYMNNK----HDLSHAFERYETAHSQP 140
>sp|O43149|ZZEF1_HUMAN Zinc finger ZZ-type and EF-hand domain-containing protein 1 OS=Homo
sapiens GN=ZZEF1 PE=1 SV=6
Length = 2961
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 50 CKECPIIG--FRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPM 90
C C I RYRCL+C + D+C+TCF G K + H H M
Sbjct: 1783 CDGCDEIAPWHRYRCLQCSDMDLCKTCFLGGVKPEGHGDDHEM 1825
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 55 IIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPM 90
IIG R C C +FD+C C+ K + H TH +
Sbjct: 1839 IIGRRMNCNVCDDFDLCYGCYAAKKYSYGHLPTHSI 1874
>sp|Q5SSH7|ZZEF1_MOUSE Zinc finger ZZ-type and EF-hand domain-containing protein 1 OS=Mus
musculus GN=Zzef1 PE=1 SV=2
Length = 2924
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 50 CKECPIIG--FRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPM 90
C C I RYRCL+C + D+C+TCF G K + H H M
Sbjct: 1781 CDGCDEIAPWHRYRCLQCSDMDLCKTCFLGGVKPEGHGDDHEM 1823
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 55 IIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPM 90
IIG R C C +FD+C C+ K + H TH +
Sbjct: 1837 IIGRRMNCNVCDDFDLCYGCYTAKKYSYGHLPTHSI 1872
>sp|Q96AX9|MIB2_HUMAN E3 ubiquitin-protein ligase MIB2 OS=Homo sapiens GN=MIB2 PE=1 SV=3
Length = 1013
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTELLP 100
C+ CK+ + G R++C C ++D+C C+ K H+L H Y T P
Sbjct: 149 CDCCKKHGLRGMRWKCRVCLDYDLCTQCYMHNK----HELAHAFDRYETAHSRP 198
>sp|O08623|SQSTM_RAT Sequestosome-1 OS=Rattus norvegicus GN=Sqstm1 PE=1 SV=1
Length = 439
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 33 HRLSAAESAKHQAKCN-ICKEC--PIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHP 89
HR A+ A+ N IC C P++G RY+C C ++D+C C +G ++ KL P
Sbjct: 107 HRPPCAQEARSMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHREHSKLIFP 166
>sp|Q54QG5|Y3893_DICDI Probable E3 ubiquitin-protein ligase DDB_G0283893 OS=Dictyostelium
discoideum GN=DDB_G0283893 PE=3 SV=2
Length = 5875
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTE 97
C++C PI G R+ C C +FD+C C+ K+H H +E+ E
Sbjct: 3231 CDLCNINPITGKRWNCSNCGDFDLCNQCY--QNPEKDHPKDHIFKEFIIDE 3279
>sp|Q9SFD5|TAD2A_ARATH Transcriptional adapter ADA2a OS=Arabidopsis thaliana GN=ADA2A
PE=1 SV=1
Length = 548
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHP 89
CN C + R++C C +FD+C CF G + HK +HP
Sbjct: 53 CNYCDKDLSGLVRFKCAVCMDFDLCVECFSVGVELNRHKNSHP 95
>sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica
GN=ADA2 PE=2 SV=2
Length = 567
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHP 89
CN C + R +C KC +FD+C CF G + H+ HP
Sbjct: 53 CNYCNKDISGKIRIKCSKCPDFDLCVECFSVGAEVTPHRSNHP 95
>sp|P34664|YOY6_CAEEL Uncharacterized protein ZK652.6 OS=Caenorhabditis elegans
GN=ZK652.6 PE=4 SV=2
Length = 575
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKN--------HKLTHPMQ 91
C+ C G RY+CL+C ++D+C +CF H +HPMQ
Sbjct: 14 CDGCAFTAFAGNRYKCLRCSDYDLCFSCFTTKNYGDQQTIADIPIHDESHPMQ 66
>sp|Q9P7J7|ADA2_SCHPO Transcriptional adapter 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=ada2 PE=1 SV=1
Length = 437
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHP 89
CN+C + RC++C +FD+C CF G H +HP
Sbjct: 8 CNVCAQDITRSIHIRCVECVDFDLCIPCFTSGASLGTHHPSHP 50
>sp|Q64337|SQSTM_MOUSE Sequestosome-1 OS=Mus musculus GN=Sqstm1 PE=1 SV=1
Length = 442
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 37 AAESAKHQAKCN-ICKEC--PIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHP 89
A E+ ++ N IC C P++G RY+C C ++D+C C +G ++ KL P
Sbjct: 114 AQEAPRNMVHPNVICDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGLHREHSKLIFP 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.137 0.477
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,610,820
Number of Sequences: 539616
Number of extensions: 1300842
Number of successful extensions: 3468
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 3388
Number of HSP's gapped (non-prelim): 96
length of query: 102
length of database: 191,569,459
effective HSP length: 71
effective length of query: 31
effective length of database: 153,256,723
effective search space: 4750958413
effective search space used: 4750958413
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)