Query psy3219
Match_columns 102
No_of_seqs 117 out of 827
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 19:21:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2e5r_A Dystrobrevin alpha; ZZ 99.9 7E-23 2.4E-27 125.0 5.6 60 36-95 3-62 (63)
2 2fc7_A ZZZ3 protein; structure 99.8 2.8E-20 9.5E-25 118.7 6.4 63 37-99 13-79 (82)
3 2dip_A Zinc finger SWIM domain 99.7 7.1E-18 2.4E-22 110.7 4.7 57 37-98 23-80 (98)
4 1tot_A CREB-binding protein; z 99.5 1.5E-15 5.1E-20 89.2 2.6 46 44-97 6-51 (52)
5 1eg3_A Dystrophin; EF-hand lik 97.8 8.7E-06 3E-10 61.0 2.8 34 6-39 227-260 (261)
6 1v5n_A PDI-like hypothetical p 94.2 0.029 1E-06 35.2 2.6 33 44-78 47-79 (89)
7 3ny3_A E3 ubiquitin-protein li 86.9 0.65 2.2E-05 28.3 3.3 33 58-95 16-51 (75)
8 2d8v_A Zinc finger FYVE domain 83.2 1 3.5E-05 27.0 2.9 53 45-102 9-61 (67)
9 1kbe_A Kinase suppressor of RA 82.7 0.85 2.9E-05 25.5 2.3 30 33-66 5-34 (49)
10 3nis_A E3 ubiquitin-protein li 81.2 1.1 3.6E-05 27.8 2.5 33 58-95 20-55 (82)
11 2cor_A Pinch protein; LIM doma 61.0 4.3 0.00015 23.8 1.8 40 35-78 30-71 (79)
12 1z60_A TFIIH basal transcripti 60.5 5.6 0.00019 23.0 2.2 32 45-77 16-47 (59)
13 2co8_A NEDD9 interacting prote 59.7 7.9 0.00027 22.8 2.9 43 35-78 31-75 (82)
14 1wig_A KIAA1808 protein; LIM d 58.3 9.1 0.00031 22.0 2.9 41 35-78 20-63 (73)
15 1x4l_A Skeletal muscle LIM-pro 54.0 7.6 0.00026 22.0 2.0 40 36-78 25-66 (72)
16 2ffw_A Midline-1; B-BOX, ring 51.8 14 0.00047 22.0 3.0 33 44-77 30-62 (78)
17 1ptq_A Protein kinase C delta 49.4 13 0.00043 19.7 2.4 23 42-65 9-34 (50)
18 2d8z_A Four and A half LIM dom 48.3 6.9 0.00023 22.0 1.2 40 35-77 20-61 (70)
19 2dar_A PDZ and LIM domain prot 47.7 6 0.00021 23.6 0.9 38 37-77 42-81 (90)
20 2cuq_A Four and A half LIM dom 47.7 7.6 0.00026 22.4 1.3 40 35-77 30-71 (80)
21 2jun_A Midline-1; B-BOX, TRIM, 47.0 10 0.00036 22.9 2.0 32 45-77 4-35 (101)
22 1x61_A Thyroid receptor intera 47.0 10 0.00034 21.4 1.8 40 35-77 22-63 (72)
23 2cur_A Skeletal muscle LIM-pro 44.9 7.9 0.00027 21.7 1.1 40 35-77 20-61 (69)
24 2ehe_A Four and A half LIM dom 44.4 7.6 0.00026 22.5 1.0 39 36-77 33-73 (82)
25 2row_A RHO-associated protein 43.7 18 0.0006 22.2 2.6 25 40-65 31-60 (84)
26 2l3k_A Rhombotin-2, linker, LI 43.6 18 0.00063 22.7 2.8 39 36-77 26-67 (123)
27 2iyb_E Testin, TESS, TES; LIM 42.5 6.6 0.00023 22.0 0.4 39 36-77 20-63 (65)
28 1x64_A Alpha-actinin-2 associa 42.3 7.5 0.00026 23.1 0.7 37 38-77 43-81 (89)
29 1nyp_A Pinch protein; LIM doma 42.1 7.9 0.00027 21.5 0.8 39 36-77 21-61 (66)
30 1x62_A C-terminal LIM domain p 40.9 7.9 0.00027 22.5 0.6 40 35-77 30-71 (79)
31 1y8f_A UNC-13 homolog A, MUNC1 40.6 17 0.00057 20.7 2.0 22 43-65 23-47 (66)
32 2db6_A SH3 and cysteine rich d 40.3 19 0.00063 21.1 2.3 22 43-65 27-51 (74)
33 2enz_A NPKC-theta, protein kin 40.0 20 0.00068 20.3 2.3 22 43-65 22-46 (65)
34 2vrw_B P95VAV, VAV1, proto-onc 39.4 19 0.00063 27.1 2.7 32 44-77 357-391 (406)
35 2egq_A FHL1 protein; LIM domai 39.1 5.5 0.00019 22.8 -0.3 37 37-76 37-75 (77)
36 2d8x_A Protein pinch; LIM doma 38.5 8.3 0.00028 21.7 0.4 40 36-78 21-62 (70)
37 1x68_A FHL5 protein; four-and- 37.4 7.7 0.00026 22.3 0.2 41 35-78 24-66 (76)
38 2enn_A NPKC-theta, protein kin 37.3 26 0.00088 20.6 2.6 23 42-65 32-57 (77)
39 1rfh_A RAS association (ralgds 36.5 23 0.00078 19.8 2.1 25 40-65 18-42 (59)
40 4b6d_A RAC GTPase-activating p 36.3 21 0.00072 20.3 2.0 25 41-66 16-42 (61)
41 2yuu_A NPKC-delta, protein kin 36.3 24 0.00083 20.9 2.4 23 42-65 26-51 (83)
42 2dlo_A Thyroid receptor-intera 35.3 16 0.00055 21.0 1.4 41 35-77 30-72 (81)
43 2fnf_X Putative RAS effector N 34.3 22 0.00074 20.8 1.9 25 40-65 31-55 (72)
44 1a7i_A QCRP2 (LIM1); LIM domai 34.3 11 0.00038 21.8 0.6 40 35-77 23-64 (81)
45 3uej_A NPKC-delta, protein kin 33.3 30 0.001 19.4 2.4 23 43-66 19-44 (65)
46 2eli_A Protein kinase C alpha 32.3 31 0.001 20.7 2.4 22 43-65 27-51 (85)
47 2dj7_A Actin-binding LIM prote 32.3 10 0.00035 22.2 0.2 38 36-77 32-71 (80)
48 1x3h_A Leupaxin; paxillin fami 32.0 19 0.00065 20.6 1.3 40 35-77 30-71 (80)
49 1wyh_A SLIM 2, skeletal muscle 31.6 15 0.00051 20.5 0.8 39 36-77 23-63 (72)
50 3c5t_B Exendin-4, exenatide; l 31.1 20 0.00067 18.2 1.1 11 11-21 10-20 (31)
51 2jne_A Hypothetical protein YF 30.3 23 0.00077 22.7 1.5 31 44-75 32-68 (101)
52 3f6q_B LIM and senescent cell 29.2 12 0.0004 20.8 0.0 38 37-77 30-69 (72)
53 2kn0_A FN14; tweak, TNF recept 28.9 23 0.00078 20.8 1.3 20 58-77 17-39 (66)
54 1faq_A RAF-1; transferase, ser 27.6 44 0.0015 17.7 2.3 22 42-65 12-33 (52)
55 1x63_A Skeletal muscle LIM-pro 27.4 19 0.00065 20.7 0.8 40 35-77 32-73 (82)
56 1g47_A Pinch protein; LIM doma 26.8 15 0.0005 20.9 0.1 38 37-77 30-69 (77)
57 1x4k_A Skeletal muscle LIM-pro 26.6 16 0.00056 20.3 0.4 39 36-77 23-63 (72)
58 2xjy_A Rhombotin-2; oncoprotei 26.5 19 0.00063 22.6 0.6 38 37-77 85-125 (131)
59 2rgt_A Fusion of LIM/homeobox 24.5 40 0.0014 22.2 2.1 38 36-77 23-62 (169)
60 1wil_A KIAA1045 protein; ring 24.2 32 0.0011 21.5 1.4 38 37-77 8-46 (89)
61 2d8y_A Eplin protein; LIM doma 21.1 42 0.0014 19.7 1.5 41 35-78 31-73 (91)
62 1x6a_A LIMK-2, LIM domain kina 20.4 70 0.0024 18.1 2.3 41 35-77 30-73 (81)
63 3ky9_A Proto-oncogene VAV; cal 20.3 68 0.0023 25.4 2.9 32 44-77 529-563 (587)
64 2cu8_A Cysteine-rich protein 2 20.3 21 0.00073 20.2 -0.0 39 36-77 26-67 (76)
No 1
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=7e-23 Score=124.97 Aligned_cols=60 Identities=37% Similarity=0.960 Sum_probs=56.7
Q ss_pred ccccCccCceeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEEec
Q psy3219 36 SAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCT 95 (102)
Q Consensus 36 ~~~~~v~h~~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i~~ 95 (102)
++.+++.|++.||+|.+.||.|.||||++|+|||||+.||+.+.+++.|+++|+|++|.+
T Consensus 3 s~~~~v~H~~~Cd~C~~~pi~G~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~t 62 (63)
T 2e5r_A 3 SGSSGVFHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTS 62 (63)
T ss_dssp CCSSSCCSCSCCSSSCCCSSCSCEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEECC
T ss_pred CCcCCceeCCCCcCCCCcceecceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEeC
Confidence 567789999999999998999999999999999999999999999999999999999975
No 2
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.81 E-value=2.8e-20 Score=118.70 Aligned_cols=63 Identities=25% Similarity=0.493 Sum_probs=57.1
Q ss_pred cccCccC-ceeCCCCCCcceeeeeEeeccCCC---CccchhhhhCCccCCCCCCCCCeEEEecCCCC
Q psy3219 37 AAESAKH-QAKCNICKECPIIGFRYRCLKCFN---FDMCQTCFFQGKKAKNHKLTHPMQEYCTTELL 99 (102)
Q Consensus 37 ~~~~v~h-~~~Cd~C~~~~i~G~RykC~~C~d---fdLC~~C~~~~~~~~~H~~~H~~~~i~~p~s~ 99 (102)
+...++| .+.||+|.+.+|.|.||||++|+| ||||+.||..+..+..|+++|+|++|..|++.
T Consensus 13 ~~~~~~H~~~~Cd~C~~~pI~G~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~~p 79 (82)
T 2fc7_A 13 ESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSSGP 79 (82)
T ss_dssp STTSCEESSCCCSSSCCSSEESCEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCCCC
T ss_pred cccCCeeCcCCCCCCCCCcceeceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCCCC
Confidence 3456777 699999998899999999999999 99999999999888999999999999998754
No 3
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=99.71 E-value=7.1e-18 Score=110.71 Aligned_cols=57 Identities=33% Similarity=0.688 Sum_probs=50.1
Q ss_pred cccCccCc-eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEEecCCC
Q psy3219 37 AAESAKHQ-AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTEL 98 (102)
Q Consensus 37 ~~~~v~h~-~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i~~p~s 98 (102)
....+.|. +.||+|.+.+|.|.||||++|+|||||+.||..+ .| +.|+|+.+.++..
T Consensus 23 ~~~~~~H~gv~Cd~C~~~pI~G~RykC~~C~d~DLC~~C~~~~----~H-~~H~f~~i~~~~~ 80 (98)
T 2dip_A 23 KERLDKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECFDSY----CH-LSHTFTFREKRNQ 80 (98)
T ss_dssp SSCCSSCCCCCCSSSCCSSCCSCEEEESSSSSCEEEHHHHHTT----SG-GGSCEEECCSSSC
T ss_pred cccccccCCCCCcCCCCCCcccCeEECCCCCCccHHHHHHccC----CC-CCCCeeEecCCCC
Confidence 33467886 9999999989999999999999999999999987 47 8999999887754
No 4
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=99.55 E-value=1.5e-15 Score=89.25 Aligned_cols=46 Identities=30% Similarity=0.735 Sum_probs=40.5
Q ss_pred ceeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEEecCC
Q psy3219 44 QAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTE 97 (102)
Q Consensus 44 ~~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i~~p~ 97 (102)
.+.||+|++. | |.||+|++|+|||||+.||..+ .| .|+|.+|..+.
T Consensus 6 ~~~Cd~C~~~-i-g~R~~C~~C~dyDLC~~C~~~~----~H--~H~m~~~~~~l 51 (52)
T 1tot_A 6 VYTCNECKHH-V-ETRWHCTVCEDYDLCINCYNTK----SH--THKMVKWGLGL 51 (52)
T ss_dssp CEEETTTTEE-E-SSEEEESSSSSCEECHHHHHHH----CC--CSSEEEECSSC
T ss_pred EEECCCCCCC-C-cceEEcCCCCCchhHHHHHhCC----CC--CCceEEecCCC
Confidence 4899999974 5 9999999999999999999986 45 69999998763
No 5
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A
Probab=97.81 E-value=8.7e-06 Score=60.95 Aligned_cols=34 Identities=56% Similarity=1.001 Sum_probs=31.6
Q ss_pred CCCCcchHHHHHHHhcCCCccchhhhhhhccccc
Q psy3219 6 GPYPQQAVHFLSWLQQEPQSIVWLPVLHRLSAAE 39 (102)
Q Consensus 6 ~~~~~~~~~f~~~~~~~p~~~~wlpll~r~~~~~ 39 (102)
+.+.|++++|++|++++|+.++|||++||+++.+
T Consensus 227 ~dg~It~~EFl~~~~~dp~il~wL~~lhR~~~~E 260 (261)
T 1eg3_A 227 NKPEIEAALFLDWMRLEPQSMVWLPVLHRVAAAE 260 (261)
T ss_dssp TCSCBCHHHHHHHHHTCCTTTTHHHHHHHHHHHC
T ss_pred CCCcCCHHHHHHHHHhCcHHHHHHHHHHHHHhcc
Confidence 5679999999999999999999999999998876
No 6
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=94.21 E-value=0.029 Score=35.23 Aligned_cols=33 Identities=27% Similarity=0.733 Sum_probs=28.1
Q ss_pred ceeCCCCCCcceeeeeEeeccCCCCccchhhhhCC
Q psy3219 44 QAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQG 78 (102)
Q Consensus 44 ~~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~ 78 (102)
.+.|+.|.. .+.|.+|+|..| ||+|=..|....
T Consensus 47 ~~~C~~C~~-~~~~~~Y~C~~C-~f~lH~~Ca~~p 79 (89)
T 1v5n_A 47 VYTCDKCEE-EGTIWSYHCDEC-DFDLHAKCALNE 79 (89)
T ss_dssp SCCCTTTSC-CCCSCEEECTTT-CCCCCHHHHHCS
T ss_pred CeEeCCCCC-cCCCcEEEcCCC-CCeEcHHhcCCC
Confidence 478999997 578999999998 799999997653
No 7
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=86.87 E-value=0.65 Score=28.30 Aligned_cols=33 Identities=24% Similarity=0.576 Sum_probs=24.0
Q ss_pred eeEeeccCC---CCccchhhhhCCccCCCCCCCCCeEEEec
Q psy3219 58 FRYRCLKCF---NFDMCQTCFFQGKKAKNHKLTHPMQEYCT 95 (102)
Q Consensus 58 ~RykC~~C~---dfdLC~~C~~~~~~~~~H~~~H~~~~i~~ 95 (102)
.-|+|..|. ..-||..||..+ .| ..|.+..+..
T Consensus 16 ~~Y~C~~C~~d~tc~lC~~CF~~~----~H-~gH~~~~~~s 51 (75)
T 3ny3_A 16 PTYSCRDCAVDPTCVLCMECFLGS----IH-RDHRYRMTTS 51 (75)
T ss_dssp EEEEETTTBSSTTCCBCHHHHHTS----GG-GGSCEEEEEC
T ss_pred EEEECccCCCCCCeeEChHHCCCC----Cc-CCceEEEEEc
Confidence 458899994 367999999986 34 4577776654
No 8
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=83.25 E-value=1 Score=27.03 Aligned_cols=53 Identities=26% Similarity=0.488 Sum_probs=38.5
Q ss_pred eeCCCCCCcceeeeeEeeccCCCCccchhhhhCCccCCCCCCCCCeEEEecCCCCCCC
Q psy3219 45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTELLPNH 102 (102)
Q Consensus 45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~~~~~~H~~~H~~~~i~~p~s~~~~ 102 (102)
.-|-.|..+ .-++|.-|.+-=+|..||..... ..=...|..+.|..|-...+|
T Consensus 9 pWC~ICneD----AtlrC~gCdgDLYC~rC~rE~H~-~~d~r~Hk~v~y~~~~k~~~~ 61 (67)
T 2d8v_A 9 PWCCICNED----ATLRCAGCDGDLYCARCFREGHD-NFDLKEHQTSPYHPRRPCQEH 61 (67)
T ss_dssp SSCTTTCSC----CCEEETTTTSEEECSSHHHHHTT-TSSTTTCCEECCCCSSSSCCC
T ss_pred CeeEEeCCC----CeEEecCCCCceehHHHHHHHcc-chhhhccceeeccCCCCCccc
Confidence 347778863 24899999775569999987542 334568999999888877766
No 9
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=82.75 E-value=0.85 Score=25.51 Aligned_cols=30 Identities=33% Similarity=0.787 Sum_probs=20.1
Q ss_pred hhcccccCccCceeCCCCCCcceeeeeEeeccCC
Q psy3219 33 HRLSAAESAKHQAKCNICKECPIIGFRYRCLKCF 66 (102)
Q Consensus 33 ~r~~~~~~v~h~~~Cd~C~~~~i~G~RykC~~C~ 66 (102)
||+...... ...||.|++.-..| ++|..|.
T Consensus 5 HrF~~~t~~--~t~C~~C~k~i~~G--~kC~~Ck 34 (49)
T 1kbe_A 5 HRFSTKSWL--SQVCNVCQKSMIFG--VKCKHCR 34 (49)
T ss_dssp CCEEEECCS--SCCCSSSCCSSCCE--EEETTTT
T ss_pred cccCccCCC--CcCccccCceeECc--CCCCCCC
Confidence 566665544 38999999754444 7887763
No 10
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=81.22 E-value=1.1 Score=27.81 Aligned_cols=33 Identities=27% Similarity=0.573 Sum_probs=24.3
Q ss_pred eeEeeccCC---CCccchhhhhCCccCCCCCCCCCeEEEec
Q psy3219 58 FRYRCLKCF---NFDMCQTCFFQGKKAKNHKLTHPMQEYCT 95 (102)
Q Consensus 58 ~RykC~~C~---dfdLC~~C~~~~~~~~~H~~~H~~~~i~~ 95 (102)
.-|+|..|. ..-||..||..+ .| ..|.+..+..
T Consensus 20 ~~Y~C~~C~~d~tcvlC~~CF~~s----~H-~gH~~~~~~s 55 (82)
T 3nis_A 20 PLYRCHECGCDDTCVLCIHCFNPK----DH-VNHHVCTDIC 55 (82)
T ss_dssp EEEEETTTBSSTTCCBCTTTCCGG----GG-TTSCEEEEEC
T ss_pred EEEEeeccCCCCCceEchhhCCCC----Cc-CCceEEEEEe
Confidence 469999994 477899999875 45 4777776554
No 11
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.95 E-value=4.3 Score=23.80 Aligned_cols=40 Identities=15% Similarity=0.149 Sum_probs=27.0
Q ss_pred cccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhCC
Q psy3219 35 LSAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQG 78 (102)
Q Consensus 35 ~~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~ 78 (102)
+.+....+|. +.|..|.. ++.+..| .. .+--+|..||...
T Consensus 30 v~a~~~~~H~~CF~C~~C~~-~L~~~~f--~~-~g~~yC~~cy~~~ 71 (79)
T 2cor_A 30 LIFKNDPYHPDHFNCANCGK-ELTADAR--EL-KGELYCLPCHDKM 71 (79)
T ss_dssp CCCSSSCCCTTTSBCSSSCC-BCCTTCE--EE-TTEEECHHHHHTT
T ss_pred EEECcceeCCCCCEeCCCCC-ccCCCCE--eE-CCEEeCHHHHHHh
Confidence 3455667885 99999996 6666544 22 3445699999764
No 12
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=60.47 E-value=5.6 Score=23.02 Aligned_cols=32 Identities=25% Similarity=0.448 Sum_probs=22.4
Q ss_pred eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
..|-+|........+|+|..|... +|.+|-.-
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~f 47 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNV-FCVDCDVF 47 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCC-BCHHHHHT
T ss_pred CcccccCcccCCCccEECCccCcC-cccchhHH
Confidence 459999963222236999999764 79999653
No 13
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.72 E-value=7.9 Score=22.76 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=25.3
Q ss_pred cccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhCC
Q psy3219 35 LSAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQG 78 (102)
Q Consensus 35 ~~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~ 78 (102)
+.+...++|. +.|..|.. ++.+..|....=.+--+|..||...
T Consensus 31 v~a~~~~wH~~CF~C~~C~~-~L~~~~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 31 LCVNGHFFHRSCFRCHTCEA-TLWPGGYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp CCBTTBCCBTTTCBCSSSCC-BCCTTSEECCTTTCCCEETTTCCCC
T ss_pred EEECCCeeCCCcCEEcCCCC-CcCCCceeEeCcCCEEEChHHHHhh
Confidence 4455567775 88888885 5655544432112334588887653
No 14
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.30 E-value=9.1 Score=21.96 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=27.1
Q ss_pred cccccCccCc--eeCCCCCCccee-eeeEeeccCCCCccchhhhhCC
Q psy3219 35 LSAAESAKHQ--AKCNICKECPII-GFRYRCLKCFNFDMCQTCFFQG 78 (102)
Q Consensus 35 ~~~~~~v~h~--~~Cd~C~~~~i~-G~RykC~~C~dfdLC~~C~~~~ 78 (102)
+.+....+|. +.|..|.. ++. |..|-=. .+--+|..||..-
T Consensus 20 v~a~~~~wH~~CF~C~~C~~-~L~~~~~f~~~--~~~~yC~~C~~~~ 63 (73)
T 1wig_A 20 LEAGEKHYHPSCALCVRCGQ-MFAEGEEMYLQ--GSSIWHPACRQAA 63 (73)
T ss_dssp BCCSSCCBCTTTSCCSSSCC-CCCSSCCCEEE--TTEEECTTHHHHT
T ss_pred EEeCCCCCCCCcCEeCCCCC-CCCCCCeeEee--CCEEEChHHChHh
Confidence 3455678885 99999996 665 5544321 2345699999764
No 15
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=53.96 E-value=7.6 Score=21.96 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=27.0
Q ss_pred ccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhCC
Q psy3219 36 SAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQG 78 (102)
Q Consensus 36 ~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~ 78 (102)
.+....+|. +.|..|.. ++.|..|.-. .+--+|..||...
T Consensus 25 ~a~~~~wH~~CF~C~~C~~-~L~~~~f~~~--~g~~yC~~c~~~~ 66 (72)
T 1x4l_A 25 SFEERQWHNDCFNCKKCSL-SLVGRGFLTE--RDDILCPDCGKDI 66 (72)
T ss_dssp ECSSCEECTTTCBCSSSCC-BCTTSCCEEC--SSSEECHHHHHTC
T ss_pred EECCcccCcccCEeccCCC-cCCCCccEeE--CCEEEChhHcCcc
Confidence 445567885 99999996 6766555422 3344699999764
No 16
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=51.84 E-value=14 Score=21.96 Aligned_cols=33 Identities=21% Similarity=0.603 Sum_probs=23.5
Q ss_pred ceeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 44 QAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 44 ~~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
.+.||.|...+-.-.--.|++|..+ ||+.|...
T Consensus 30 ~v~C~~C~~~~~~~A~ksCl~C~~s-~C~~hl~~ 62 (78)
T 2ffw_A 30 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 62 (78)
T ss_dssp CCBCSSCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CccCCcCCCCCCCCCeeEccCccch-hhhhhhHh
Confidence 4899999853312234579999765 89999874
No 17
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=49.45 E-value=13 Score=19.73 Aligned_cols=23 Identities=22% Similarity=0.619 Sum_probs=16.6
Q ss_pred cCceeCCCCCCcceee---eeEeeccC
Q psy3219 42 KHQAKCNICKECPIIG---FRYRCLKC 65 (102)
Q Consensus 42 ~h~~~Cd~C~~~~i~G---~RykC~~C 65 (102)
..+..|+.|.. .|.| .-|+|..|
T Consensus 9 ~~pt~C~~C~~-~l~g~~~qg~~C~~C 34 (50)
T 1ptq_A 9 MSPTFCDHCGS-LLWGLVKQGLKCEDC 34 (50)
T ss_dssp SSCCBCTTTCC-BCCSSSSCEEEETTT
T ss_pred CCCCCcCCCCc-eeeccCCccCEeCCC
Confidence 34588999995 6776 45777766
No 18
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.29 E-value=6.9 Score=21.97 Aligned_cols=40 Identities=25% Similarity=0.643 Sum_probs=26.7
Q ss_pred cccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 35 LSAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 35 ~~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
+.+....+|. +.|..|.. ++.+..|.-. .+--+|..||..
T Consensus 20 ~~a~~~~~H~~CF~C~~C~~-~L~~~~~~~~--~~~~yC~~cy~~ 61 (70)
T 2d8z_A 20 VTYREQPWHKECFVCTACRK-QLSGQRFTAR--DDFAYCLNCFCD 61 (70)
T ss_dssp EESSSSEEETTTSBCSSSCC-BCTTSCCEES--SSSEECHHHHHH
T ss_pred EEECccccCCCCCccCCCCC-cCCcCceEee--CCeEECHHHHHH
Confidence 3455567785 99999996 6766555432 334469999865
No 19
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.70 E-value=6 Score=23.58 Aligned_cols=38 Identities=18% Similarity=0.340 Sum_probs=20.0
Q ss_pred cccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 37 AAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 37 ~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
+....+|. +.|..|.. ++.+..|.- =.+--+|..||..
T Consensus 42 a~~~~~H~~CF~C~~C~~-~L~~~~f~~--~~g~~yC~~cy~~ 81 (90)
T 2dar_A 42 ALGKSWHPEEFNCAHCKN-TMAYIGFVE--EKGALYCELCYEK 81 (90)
T ss_dssp ETTEEECTTTCBCSSSCC-BCSSSCBEE--SSSCEECHHHHHH
T ss_pred ECCccccccCCccCCCCC-CCCCCEeEe--ECCEEECHHHHHH
Confidence 34445564 67777764 555444321 1223358888765
No 20
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.68 E-value=7.6 Score=22.39 Aligned_cols=40 Identities=20% Similarity=0.498 Sum_probs=26.6
Q ss_pred cccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 35 LSAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 35 ~~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
+.+....+|. +.|..|.. ++.|..|.= =.+--+|..||.+
T Consensus 30 v~a~~~~~H~~CF~C~~C~~-~L~~~~~~~--~~~~~yC~~cy~~ 71 (80)
T 2cuq_A 30 VTYRDQPWHRECLVCTGCQT-PLAGQQFTS--RDEDPYCVACFGE 71 (80)
T ss_dssp EESSSSEECTTTCBCSSSCC-BCTTCCEEE--CSSSEEEHHHHHH
T ss_pred EEECCchhhhhhCCcccCCC-cCCCCeeEe--ECCEEECHHHHHH
Confidence 4455667785 99999996 676655532 2344569999875
No 21
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=47.01 E-value=10 Score=22.87 Aligned_cols=32 Identities=22% Similarity=0.607 Sum_probs=23.9
Q ss_pred eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 45 ~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
+.|+.|........-..|+.|..+ ||..|...
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 789999853334456779999654 89999875
No 22
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=47.00 E-value=10 Score=21.35 Aligned_cols=40 Identities=18% Similarity=0.497 Sum_probs=26.7
Q ss_pred cccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 35 LSAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 35 ~~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
+.+....+|. +.|..|.. ++.|..|.-. .+--+|..||..
T Consensus 22 ~~a~~~~~H~~CF~C~~C~~-~L~~~~~~~~--~~~~yC~~cy~~ 63 (72)
T 1x61_A 22 VVALDRVFHVGCFVCSTCRA-QLRGQHFYAV--ERRAYCEGCYVA 63 (72)
T ss_dssp EECSSSEECTTTCBCSSSCC-BCTTSCEEES--SSCEEEHHHHHH
T ss_pred EEECCCeEcccCCcccccCC-cCCcCcCEee--CCeEECHHHHHH
Confidence 3455567785 99999996 6666655433 234569999865
No 23
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.95 E-value=7.9 Score=21.69 Aligned_cols=40 Identities=18% Similarity=0.492 Sum_probs=26.2
Q ss_pred cccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 35 LSAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 35 ~~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
+.+....+|. +.|..|.. ++.|..|.=. .+--+|..||..
T Consensus 20 ~~a~~~~~H~~CF~C~~C~~-~L~~~~~~~~--~~~~yC~~cy~~ 61 (69)
T 2cur_A 20 ITYQDQPWHADCFVCVTCSK-KLAGQRFTAV--EDQYYCVDCYKN 61 (69)
T ss_dssp EEETTEEECTTTTBCTTTCC-BCTTSCEEEC--SSCEEEHHHHHH
T ss_pred EEECccccccCcCEECCCCC-CCCCCccEeE--CCEEECHHHhHH
Confidence 3445567785 99999996 6666555422 234569999865
No 24
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.43 E-value=7.6 Score=22.55 Aligned_cols=39 Identities=15% Similarity=0.464 Sum_probs=23.9
Q ss_pred ccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 36 SAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 36 ~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
.+....+|. +.|..|.+ ++.+..|.-. .+--+|..||..
T Consensus 33 ~a~~~~~H~~CF~C~~C~~-~L~~~~f~~~--~~~~~C~~c~~~ 73 (82)
T 2ehe_A 33 FYEDRHFHEGCFRCCRCQR-SLADEPFTCQ--DSELLCNDCYCS 73 (82)
T ss_dssp CCSSCCCBTTTSBCTTTCC-BCSSCCEEEE--TTEEEETTTSSC
T ss_pred EeCCccccccCCeecCCCC-ccCCCccEee--CCEEECHHHHhh
Confidence 344567775 88998986 6666555221 233457777755
No 25
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=43.65 E-value=18 Score=22.20 Aligned_cols=25 Identities=20% Similarity=0.699 Sum_probs=19.0
Q ss_pred CccCceeCCCCCCcceeee-----eEeeccC
Q psy3219 40 SAKHQAKCNICKECPIIGF-----RYRCLKC 65 (102)
Q Consensus 40 ~v~h~~~Cd~C~~~~i~G~-----RykC~~C 65 (102)
....+..|+.|.. .|.|. .|+|..|
T Consensus 31 ~~~~PT~Cd~C~~-~lWGl~kqp~G~~C~~C 60 (84)
T 2row_A 31 LYHFPTNCEACMK-PLWHMFKPPPALECRRC 60 (84)
T ss_dssp CCSSCEECSSSSS-EECCSSSCCCEEEESSS
T ss_pred cCCCCcchhhcCH-hhhccccCCCCCEecCC
Confidence 3444699999995 78874 6888877
No 26
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=43.64 E-value=18 Score=22.74 Aligned_cols=39 Identities=21% Similarity=0.478 Sum_probs=26.8
Q ss_pred ccccCccCc--eeCCCCCCcce-eeeeEeeccCCCCccchhhhhC
Q psy3219 36 SAAESAKHQ--AKCNICKECPI-IGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 36 ~~~~~v~h~--~~Cd~C~~~~i-~G~RykC~~C~dfdLC~~C~~~ 77 (102)
.+...++|. +.|..|.+ ++ .|.+|.-. .+--+|..||..
T Consensus 26 ~a~~~~~H~~CF~C~~C~~-~L~~g~~f~~~--~g~~yC~~cy~~ 67 (123)
T 2l3k_A 26 RVKDKVYHLECFKCAACQK-HFSVGDRYLLI--NSDIVCEQDIYE 67 (123)
T ss_dssp CCSSCCCCTTTCBCTTTCC-BCCTTCEEEEC--SSSEEEGGGHHH
T ss_pred EECCcccccccCccccCCC-CCCCCCcEEee--CCEEEcHHHhHH
Confidence 455677885 99999996 66 56666433 345568888865
No 27
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=42.45 E-value=6.6 Score=21.97 Aligned_cols=39 Identities=18% Similarity=0.438 Sum_probs=24.5
Q ss_pred ccccCccC--c--eeCCCCCCcceeeeeEeeccCCCCccc-hhhhhC
Q psy3219 36 SAAESAKH--Q--AKCNICKECPIIGFRYRCLKCFNFDMC-QTCFFQ 77 (102)
Q Consensus 36 ~~~~~v~h--~--~~Cd~C~~~~i~G~RykC~~C~dfdLC-~~C~~~ 77 (102)
.+....+| . +.|..|++ ++.|..|.-.. +--+| .+||..
T Consensus 20 ~a~~~~wH~~~~CF~C~~C~~-~L~~~~f~~~~--g~~yC~~~C~~k 63 (65)
T 2iyb_E 20 TYNNFSWHASTECFLCSCCSK-CLIGQKFMPVE--GMVFCSVECKKR 63 (65)
T ss_dssp EETTEEEETTTTTSBCTTTCC-BCTTSCCEEET--TEEESSHHHHHT
T ss_pred EECCCccCCCCCCEECCCCCC-cCCCCceEEEC--CEEecCHHHhhh
Confidence 44456677 5 89999986 67766554322 33458 778753
No 28
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=42.26 E-value=7.5 Score=23.10 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=17.2
Q ss_pred ccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 38 AESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 38 ~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
....+|. +.|..|.+ ++.+..|--. .+--+|..||..
T Consensus 43 ~~~~~H~~CF~C~~C~~-~L~~~~~~~~--~g~~yC~~~y~~ 81 (89)
T 1x64_A 43 RDKYRHPECFVCADCNL-NLKQKGYFFV--EGELYCETHARA 81 (89)
T ss_dssp SSCEECTTTCCCSSSCC-CTTTSCCEEE--TTEEECHHHHHH
T ss_pred CCceECccCCEecCCCC-CCCCCCeEeE--CCEEECHHHHHH
Confidence 3345553 66666664 3333222211 223357777754
No 29
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=42.05 E-value=7.9 Score=21.47 Aligned_cols=39 Identities=26% Similarity=0.452 Sum_probs=24.5
Q ss_pred ccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 36 SAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 36 ~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
.+....+|. +.|..|.. ++.+..|.-. .+--+|..||..
T Consensus 21 ~a~~~~~H~~CF~C~~C~~-~L~~~~~~~~--~g~~yC~~~y~~ 61 (66)
T 1nyp_A 21 NAMGKQWHVEHFVCAKCEK-PFLGHRHYER--KGLAYCETHYNQ 61 (66)
T ss_dssp CCTTSBEETTTCBCTTTCC-BCSSSCCEEE--TTEEECHHHHHH
T ss_pred EECccccccCcCEECCCCC-CCCCCceEeE--CCcEECHHHHHH
Confidence 445567775 89999986 6666544321 233458888864
No 30
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.89 E-value=7.9 Score=22.46 Aligned_cols=40 Identities=10% Similarity=0.126 Sum_probs=24.4
Q ss_pred cccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 35 LSAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 35 ~~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
+.+...++|. +.|..|.+ ++.+..|--. .+--+|..||..
T Consensus 30 ~~a~~~~~H~~CF~C~~C~~-~L~~~~~~~~--~g~~yC~~cy~~ 71 (79)
T 1x62_A 30 VKLRDRHRHPECYVCTDCGT-NLKQKGHFFV--EDQIYCEKHARE 71 (79)
T ss_dssp EECSSCEECTTTTSCSSSCC-CHHHHCCEES--SSCEECHHHHHH
T ss_pred EEECcceeCcCcCeeCCCCC-CCCCCCeEeE--CCEEECHHHHHH
Confidence 3455567775 88888885 5655444322 234458888865
No 31
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=40.56 E-value=17 Score=20.73 Aligned_cols=22 Identities=27% Similarity=0.703 Sum_probs=16.2
Q ss_pred CceeCCCCCCcceee---eeEeeccC
Q psy3219 43 HQAKCNICKECPIIG---FRYRCLKC 65 (102)
Q Consensus 43 h~~~Cd~C~~~~i~G---~RykC~~C 65 (102)
....|+.|.. .|.| .-|+|..|
T Consensus 23 ~pt~C~~C~~-~l~Gl~~qg~~C~~C 47 (66)
T 1y8f_A 23 TPTYCYECEG-LLWGIARQGMRCTEC 47 (66)
T ss_dssp SCCCCTTTCC-CCCSSCCEEEEETTT
T ss_pred CCcChhhcCh-hhcccCcceeEcCCC
Confidence 4589999996 6777 34777766
No 32
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.26 E-value=19 Score=21.09 Aligned_cols=22 Identities=32% Similarity=0.874 Sum_probs=17.2
Q ss_pred CceeCCCCCCcceee---eeEeeccC
Q psy3219 43 HQAKCNICKECPIIG---FRYRCLKC 65 (102)
Q Consensus 43 h~~~Cd~C~~~~i~G---~RykC~~C 65 (102)
....|+.|.. .|.| .-|+|..|
T Consensus 27 ~pt~C~~C~~-~lwGl~kqG~~C~~C 51 (74)
T 2db6_A 27 KPKFCDVCAR-MIVLNNKFGLRCKNC 51 (74)
T ss_dssp SCEECSSSCC-EECHHHHEEEEESSS
T ss_pred CCcCchhcCh-hhccccCCccccCCC
Confidence 3599999995 7877 46888777
No 33
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=39.97 E-value=20 Score=20.29 Aligned_cols=22 Identities=23% Similarity=0.613 Sum_probs=16.2
Q ss_pred CceeCCCCCCcceee---eeEeeccC
Q psy3219 43 HQAKCNICKECPIIG---FRYRCLKC 65 (102)
Q Consensus 43 h~~~Cd~C~~~~i~G---~RykC~~C 65 (102)
.+..|+.|.. .|.| .-|+|..|
T Consensus 22 ~pt~C~~C~~-~l~Gl~~qg~~C~~C 46 (65)
T 2enz_A 22 SPTFCEHCGT-LLWGLARQGLKCDAC 46 (65)
T ss_dssp SCCBCSSSCC-BCCCSSSCSEEESSS
T ss_pred CCcCchhcCh-hheecCCcccccCCC
Confidence 3589999996 6777 35777766
No 34
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=39.44 E-value=19 Score=27.09 Aligned_cols=32 Identities=25% Similarity=0.719 Sum_probs=25.1
Q ss_pred ceeCCCCCCcceee---eeEeeccCCCCccchhhhhC
Q psy3219 44 QAKCNICKECPIIG---FRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 44 ~~~Cd~C~~~~i~G---~RykC~~C~dfdLC~~C~~~ 77 (102)
...|+.|.. .+.| .+|+|..| .+..|..|...
T Consensus 357 ~t~C~~C~~-~~~g~~~qg~~C~~C-~~~~h~~C~~~ 391 (406)
T 2vrw_B 357 TTSCKACQM-LLRGTFYQGYRCYRC-RAPAHKECLGR 391 (406)
T ss_dssp CCBCTTTCC-BCCSSSSCEEEETTT-CCEECGGGGGG
T ss_pred CCCCccccc-hhceeCCCCCCCCCC-cCccchhhhhh
Confidence 489999996 6665 68999998 45678999765
No 35
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=39.06 E-value=5.5 Score=22.83 Aligned_cols=37 Identities=16% Similarity=0.282 Sum_probs=17.5
Q ss_pred cccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhh
Q psy3219 37 AAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFF 76 (102)
Q Consensus 37 ~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~ 76 (102)
+....+|. +.|..|.. ++.|..|. .=.+--+|..||.
T Consensus 37 a~~~~~H~~CF~C~~C~~-~L~~~~f~--~~~~~~yC~~cy~ 75 (77)
T 2egq_A 37 YEGQSWHDYCFHCKKCSV-NLANKRFV--FHQEQVYCPDCAK 75 (77)
T ss_dssp ETTEEEETTTCBCSSSCC-BCTTSCCC--EETTEECCHHHHH
T ss_pred ECcceeCcccCEehhcCC-CCCCCccE--eECCEEEChHHhc
Confidence 33445553 66666664 45443332 1112234666663
No 36
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.47 E-value=8.3 Score=21.66 Aligned_cols=40 Identities=18% Similarity=0.497 Sum_probs=25.3
Q ss_pred ccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhCC
Q psy3219 36 SAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQG 78 (102)
Q Consensus 36 ~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~ 78 (102)
.+....+|. +.|..|.. ++.+..|.- =.+--+|..||...
T Consensus 21 ~a~~~~~H~~CF~C~~C~~-~L~~~~f~~--~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 21 KAMNNSWHPECFRCDLCQE-VLADIGFVK--NAGRHLCRPCHNRE 62 (70)
T ss_dssp EETTEEECTTTSBCSSSCC-BCSSSCCEE--ETTEEECHHHHHHH
T ss_pred EECcccccccCCEeCCCCC-cCCCCccEe--ECCeEECHHHhhhh
Confidence 445567785 99999996 665543331 12344699998763
No 37
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.41 E-value=7.7 Score=22.27 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=25.9
Q ss_pred cccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhCC
Q psy3219 35 LSAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQG 78 (102)
Q Consensus 35 ~~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~ 78 (102)
+.+....+|. +.|..|.. ++.+..|--. .+--+|..||...
T Consensus 24 ~~a~~~~wH~~CF~C~~C~~-~L~~~~f~~~--~g~~yC~~cy~~~ 66 (76)
T 1x68_A 24 ICFQDSQWHSECFNCGKCSV-SLVGKGFLTQ--NKEIFCQKCGSGM 66 (76)
T ss_dssp EEETTEEEEGGGCBCTTTCC-BCSSSCEEEE--TTEEEETTTTCCC
T ss_pred EEECCcccCcccCChhhCCC-cCCCCceEeE--CCEEECHHHhhhh
Confidence 3445567785 99999986 6666555422 2344588888653
No 38
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=37.27 E-value=26 Score=20.60 Aligned_cols=23 Identities=30% Similarity=0.883 Sum_probs=16.8
Q ss_pred cCceeCCCCCCcceee---eeEeeccC
Q psy3219 42 KHQAKCNICKECPIIG---FRYRCLKC 65 (102)
Q Consensus 42 ~h~~~Cd~C~~~~i~G---~RykC~~C 65 (102)
..+..|+.|.. .|.| .-|+|..|
T Consensus 32 ~~pt~C~~C~~-~lwGl~kqG~~C~~C 57 (77)
T 2enn_A 32 PQPTFCSVCHE-FVWGLNKQGYQCRQC 57 (77)
T ss_dssp SSCEECSSSCC-EECCTTCCEEECSSS
T ss_pred CCCcCccccCh-hhccccccccCcCCC
Confidence 34599999995 7776 35777766
No 39
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=36.52 E-value=23 Score=19.81 Aligned_cols=25 Identities=20% Similarity=0.632 Sum_probs=16.7
Q ss_pred CccCceeCCCCCCcceeeeeEeeccC
Q psy3219 40 SAKHQAKCNICKECPIIGFRYRCLKC 65 (102)
Q Consensus 40 ~v~h~~~Cd~C~~~~i~G~RykC~~C 65 (102)
.......||.|.. -|...-|+|..|
T Consensus 18 ~~~~pt~C~~C~~-~i~kqg~kC~~C 42 (59)
T 1rfh_A 18 LRGGPGWCDLCGR-EVLRQALRCANC 42 (59)
T ss_dssp CSSCCEECTTTCS-EECSCCEECTTT
T ss_pred ccCCCeEchhcch-hhhhCccEeCCC
Confidence 3444689999995 553345777766
No 40
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=36.34 E-value=21 Score=20.34 Aligned_cols=25 Identities=24% Similarity=0.668 Sum_probs=17.6
Q ss_pred ccCceeCCCCCCcce-ee-eeEeeccCC
Q psy3219 41 AKHQAKCNICKECPI-IG-FRYRCLKCF 66 (102)
Q Consensus 41 v~h~~~Cd~C~~~~i-~G-~RykC~~C~ 66 (102)
+.....|+.|.+ .| .| .-|||..|.
T Consensus 16 ~~~~~~C~~Cg~-~i~~gkq~~kC~dC~ 42 (61)
T 4b6d_A 16 VIKPESCVPCGK-RIKFGKLSLKCRDCR 42 (61)
T ss_dssp CCSCEECTTTCC-EECTTCEEEEESSSS
T ss_pred ccCCcccccccC-EEEEeeEeeECCCCC
Confidence 344699999985 55 33 458988874
No 41
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.29 E-value=24 Score=20.95 Aligned_cols=23 Identities=30% Similarity=0.918 Sum_probs=17.1
Q ss_pred cCceeCCCCCCcceee---eeEeeccC
Q psy3219 42 KHQAKCNICKECPIIG---FRYRCLKC 65 (102)
Q Consensus 42 ~h~~~Cd~C~~~~i~G---~RykC~~C 65 (102)
.....|+.|.. .|.| .-|+|..|
T Consensus 26 ~~pt~C~~C~~-~lwGl~kqg~~C~~C 51 (83)
T 2yuu_A 26 GQPTFCSVCKD-FVWGLNKQGYKCRQC 51 (83)
T ss_dssp SSCCCCSSSCC-CCCSSSCCEEEETTT
T ss_pred CCCcChhhcCh-hhccccccccccCCc
Confidence 34589999996 6776 35788777
No 42
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.34 E-value=16 Score=21.04 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=25.8
Q ss_pred cccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 35 LSAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 35 ~~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
+.+....+|. +.|..|.+ ++.|..|.-.. .+--+|..||..
T Consensus 30 ~~a~~~~~H~~CF~C~~C~~-~L~~~~f~~~~-~g~~yC~~cy~~ 72 (81)
T 2dlo_A 30 LRAMGKAYHPGCFTCVVCHR-GLDGIPFTVDA-TSQIHCIEDFHR 72 (81)
T ss_dssp EEETTEEECTTTCBCSSSCC-BCTTSCEECCT-TCCCEEHHHHHH
T ss_pred EEECCccccHHhcCcccCCC-ccCCCeeEECC-CCEEECHHHHHH
Confidence 3455567785 89999986 67666553211 123468999865
No 43
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=34.26 E-value=22 Score=20.84 Aligned_cols=25 Identities=20% Similarity=0.632 Sum_probs=17.0
Q ss_pred CccCceeCCCCCCcceeeeeEeeccC
Q psy3219 40 SAKHQAKCNICKECPIIGFRYRCLKC 65 (102)
Q Consensus 40 ~v~h~~~Cd~C~~~~i~G~RykC~~C 65 (102)
.......|+.|.. -|...-|+|..|
T Consensus 31 ~~~~pt~C~~C~~-~l~~qG~kC~~C 55 (72)
T 2fnf_X 31 LRGGPGWCDLCGR-EVLRQALRCANC 55 (72)
T ss_dssp CCSSCCBCTTTSS-BCSSCCEECTTS
T ss_pred cCCCCcchhhhhH-HHHhCcCccCCC
Confidence 3344589999995 454456788776
No 44
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=34.25 E-value=11 Score=21.77 Aligned_cols=40 Identities=13% Similarity=0.309 Sum_probs=25.6
Q ss_pred cccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 35 LSAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 35 ~~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
+.+....+|. +.|..|.. ++.+..|.-. .+--+|..||..
T Consensus 23 ~~a~~~~~H~~CF~C~~C~~-~L~~~~~~~~--~~~~yC~~cy~~ 64 (81)
T 1a7i_A 23 VQCDGRSFHRCCFLCMVCRK-NLDSTTVAIH--DAEVYCKSCYGK 64 (81)
T ss_dssp EEETTEEEESSSEECSSSCC-EECSSCCEEE--TTEEECSHHHHH
T ss_pred EEeCCcccccccCccCCCCC-CCCCCCeEee--CCEEECHHHHHH
Confidence 3445567775 99999996 6666544322 334458888865
No 45
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=33.32 E-value=30 Score=19.42 Aligned_cols=23 Identities=22% Similarity=0.564 Sum_probs=16.5
Q ss_pred CceeCCCCCCcceee---eeEeeccCC
Q psy3219 43 HQAKCNICKECPIIG---FRYRCLKCF 66 (102)
Q Consensus 43 h~~~Cd~C~~~~i~G---~RykC~~C~ 66 (102)
....|+.|.. .|.| .-|+|..|.
T Consensus 19 ~pt~C~~C~~-~l~Gl~~qg~~C~~C~ 44 (65)
T 3uej_A 19 SPTFCDHCGS-LLWGLVKQGLKCEDCG 44 (65)
T ss_dssp SCCBCTTTCC-BCCSSSSCEEEETTTC
T ss_pred CCCcccccCh-hhhccCceeeECCCCC
Confidence 4589999995 6666 357777763
No 46
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.34 E-value=31 Score=20.65 Aligned_cols=22 Identities=23% Similarity=0.658 Sum_probs=16.4
Q ss_pred CceeCCCCCCcceee---eeEeeccC
Q psy3219 43 HQAKCNICKECPIIG---FRYRCLKC 65 (102)
Q Consensus 43 h~~~Cd~C~~~~i~G---~RykC~~C 65 (102)
....|+.|.. .|.| .-|+|..|
T Consensus 27 ~pt~C~~C~~-~l~Gl~kqG~~C~~C 51 (85)
T 2eli_A 27 SPTFCDHCGS-LLYGLIHQGMKCDTC 51 (85)
T ss_dssp SCCBCSSSCC-BCCCSSSCEEECSSS
T ss_pred CCcCCcccCc-cccccccCCCcCCCc
Confidence 4589999996 6777 45777766
No 47
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.25 E-value=10 Score=22.21 Aligned_cols=38 Identities=21% Similarity=0.447 Sum_probs=23.2
Q ss_pred ccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 36 SAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 36 ~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
.+....+|. +.|..|.. ++.| .| ..=.+--+|..||..
T Consensus 32 ~a~~~~wH~~CF~C~~C~~-~L~~-~~--~~~~g~~yC~~~y~~ 71 (80)
T 2dj7_A 32 LALDKQWHVSCFKCQTCSV-ILTG-EY--ISKDGVPYCESDYHA 71 (80)
T ss_dssp EETTEEECTTTCBCSSSCC-BCSS-CC--EEETTEEECTTHHHH
T ss_pred EECCcccccccCCcCcCCC-CcCC-Ce--EEECCEEECHHHHHH
Confidence 344556775 88888885 6665 23 222344468888865
No 48
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.97 E-value=19 Score=20.55 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=25.1
Q ss_pred cccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 35 LSAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 35 ~~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
+.+....+|. +.|..|.. ++.+..|.-. .+--+|..||..
T Consensus 30 v~a~~~~~H~~CF~C~~C~~-~L~~~~~~~~--~~~~yC~~~y~~ 71 (80)
T 1x3h_A 30 LSAMDTVWHPECFVCGDCFT-SFSTGSFFEL--DGRPFCELHYHH 71 (80)
T ss_dssp EEETTEEECTTTCBCSSSCC-BSCSSCCEES--SSCEECHHHHHH
T ss_pred EEECCCeEecCcCChhhCCC-CCCCCcEEeE--CCEEECHHHHHH
Confidence 3455567785 89999986 6655443322 334468888865
No 49
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.64 E-value=15 Score=20.55 Aligned_cols=39 Identities=15% Similarity=0.326 Sum_probs=24.5
Q ss_pred ccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 36 SAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 36 ~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
.+....+|. +.|..|.. ++.+..|.-. .+--+|..||..
T Consensus 23 ~a~~~~~H~~CF~C~~C~~-~L~~~~~~~~--~~~~yC~~cy~~ 63 (72)
T 1wyh_A 23 EYGGQTWHEHCFLCSGCEQ-PLGSRSFVPD--KGAHYCVPCYEN 63 (72)
T ss_dssp CSTTCCEETTTCBCTTTCC-BTTTSCEEEE--TTEEEEHHHHHH
T ss_pred EECccccCcccCeECCCCC-cCCCCccCCc--CCeEECHHHHHH
Confidence 344567775 89999986 6665444321 233458888865
No 50
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=31.13 E-value=20 Score=18.22 Aligned_cols=11 Identities=27% Similarity=0.800 Sum_probs=8.8
Q ss_pred chHHHHHHHhc
Q psy3219 11 QAVHFLSWLQQ 21 (102)
Q Consensus 11 ~~~~f~~~~~~ 21 (102)
.+.+|++|++.
T Consensus 10 aakdFv~WL~n 20 (31)
T 3c5t_B 10 AVRLFIEWLKN 20 (31)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 45679999995
No 51
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=30.30 E-value=23 Score=22.70 Aligned_cols=31 Identities=26% Similarity=0.667 Sum_probs=20.5
Q ss_pred ceeCCCCCCcce--eeeeEeeccCC-CCcc---chhhh
Q psy3219 44 QAKCNICKECPI--IGFRYRCLKCF-NFDM---CQTCF 75 (102)
Q Consensus 44 ~~~Cd~C~~~~i--~G~RykC~~C~-dfdL---C~~C~ 75 (102)
...|..|++ .+ .|..|.|..|. ||.+ |.+|-
T Consensus 32 ~~~CP~Cq~-eL~~~g~~~hC~~C~~~f~~~a~CPdC~ 68 (101)
T 2jne_A 32 ELHCPQCQH-VLDQDNGHARCRSCGEFIEMKALCPDCH 68 (101)
T ss_dssp CCBCSSSCS-BEEEETTEEEETTTCCEEEEEEECTTTC
T ss_pred cccCccCCC-cceecCCEEECccccchhhccccCcchh
Confidence 478888886 33 55567788885 4543 66664
No 52
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=29.21 E-value=12 Score=20.77 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=21.2
Q ss_pred cccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 37 AAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 37 ~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
+...++|. +.|..|++ ++.+..|.- =.+--+|..||..
T Consensus 30 ~~~~~~H~~CF~C~~C~~-~L~~~~~~~--~~g~~yC~~~y~~ 69 (72)
T 3f6q_B 30 SNGELYHEQCFVCAQCFQ-QFPEGLFYE--FEGRKYCEHDFQM 69 (72)
T ss_dssp ETTEEEETTTSSCTTTCC-CCGGGCCEE--ETTEEECHHHHHH
T ss_pred eCcCeeCcCCCcccCCCC-CCCCCCeEe--ECCeEeCHHHHHH
Confidence 44455674 88888886 554433321 1233457777753
No 53
>2kn0_A FN14; tweak, TNF receptor, CRD, mutagenesis, apoptosis; NMR {Xenopus laevis}
Probab=28.89 E-value=23 Score=20.80 Aligned_cols=20 Identities=30% Similarity=0.590 Sum_probs=13.1
Q ss_pred eeEeeccC---CCCccchhhhhC
Q psy3219 58 FRYRCLKC---FNFDMCQTCFFQ 77 (102)
Q Consensus 58 ~RykC~~C---~dfdLC~~C~~~ 77 (102)
.-+.|..| ++-|+|+.|-+.
T Consensus 17 kCM~Cs~C~~~p~SdfC~~cps~ 39 (66)
T 2kn0_A 17 KCMECSVCKNSEKSDFCQNCPSK 39 (66)
T ss_dssp EEEESTTCSSCCCCTTTTTCCCC
T ss_pred hhcccCcCCCCCCcccccCCCCC
Confidence 34455555 457899999654
No 54
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=27.64 E-value=44 Score=17.66 Aligned_cols=22 Identities=32% Similarity=0.862 Sum_probs=15.2
Q ss_pred cCceeCCCCCCcceeeeeEeeccC
Q psy3219 42 KHQAKCNICKECPIIGFRYRCLKC 65 (102)
Q Consensus 42 ~h~~~Cd~C~~~~i~G~RykC~~C 65 (102)
.....|+.|.+ .|. .-|+|..|
T Consensus 12 ~~pt~C~~C~~-~l~-qG~~C~~C 33 (52)
T 1faq_A 12 LKLAFCDICQK-FLL-NGFRCQTC 33 (52)
T ss_dssp SSCEECTTSSS-EEC-SEEECTTT
T ss_pred CCCcCCCCccc-ccc-cCCEeCCC
Confidence 34699999996 443 45777766
No 55
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.36 E-value=19 Score=20.66 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=24.0
Q ss_pred cccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 35 LSAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 35 ~~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
+.+....+|. +.|..|.+ ++.+..|.-. .+--+|..||..
T Consensus 32 ~~a~~~~~H~~CF~C~~C~~-~L~~~~~~~~--~~~~yC~~cy~~ 73 (82)
T 1x63_A 32 VEYKGTVWHKDCFTCSNCKQ-VIGTGSFFPK--GEDFYCVTCHET 73 (82)
T ss_dssp EECSSCEEETTTCCCSSSCC-CCTTSCEEEE--TTEEEEHHHHHH
T ss_pred EEECccccccccCchhhCCC-ccCCCccEee--CCEEECHHHHHH
Confidence 3445566774 88888885 5555444322 233458888865
No 56
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.79 E-value=15 Score=20.88 Aligned_cols=38 Identities=13% Similarity=0.167 Sum_probs=21.9
Q ss_pred cccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 37 AAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 37 ~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
+....+|. +.|..|.+ ++.+..|.-. .+--+|..||..
T Consensus 30 a~~~~~H~~CF~C~~C~~-~L~~~~~~~~--~g~~yC~~~y~~ 69 (77)
T 1g47_A 30 SNGELYHEQCFVCAQCFQ-QFPEGLFYEF--EGRKYCEHDFQM 69 (77)
T ss_dssp ETTEEECTTTCCCTTTCC-CCGGGCSEEE--TTEEECHHHHHH
T ss_pred eCccEeccccCeECCCCC-CCCCCCeEeE--CCeEeCHHHHHH
Confidence 34456674 88888885 5554333311 223358888864
No 57
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.61 E-value=16 Score=20.34 Aligned_cols=39 Identities=23% Similarity=0.426 Sum_probs=24.3
Q ss_pred ccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 36 SAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 36 ~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
.+....+|. +.|..|.. ++.+..|.-. .+--+|..||..
T Consensus 23 ~a~~~~~H~~CF~C~~C~~-~L~~~~~~~~--~~~~yC~~cy~~ 63 (72)
T 1x4k_A 23 EYKGSSWHETCFICHRCQQ-PIGTKSFIPK--DNQNFCVPCYEK 63 (72)
T ss_dssp EETTEEEETTTTCCSSSCC-CCCSSSEEEE--TTEEEEHHHHHH
T ss_pred EECcCeecccCCcccccCC-ccCCCccCcc--CCeEECHHHHhH
Confidence 344456775 88999986 6665544322 233458889865
No 58
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=26.53 E-value=19 Score=22.64 Aligned_cols=38 Identities=21% Similarity=0.492 Sum_probs=21.4
Q ss_pred cccCccCc--eeCCCCCCcce-eeeeEeeccCCCCccchhhhhC
Q psy3219 37 AAESAKHQ--AKCNICKECPI-IGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 37 ~~~~v~h~--~~Cd~C~~~~i-~G~RykC~~C~dfdLC~~C~~~ 77 (102)
+...++|. +.|..|.+ ++ .|.+|.=. .+--+|..||..
T Consensus 85 a~~~~~H~~CF~C~~C~~-~L~~g~~f~~~--~~~~~C~~c~~~ 125 (131)
T 2xjy_A 85 VKDKVYHLECFKCAACQK-HFCVGDRYLLI--NSDIVCEQDIYE 125 (131)
T ss_dssp ETTEEEEGGGCBCTTTCC-BCCTTCEEEEE--TTEEEEGGGHHH
T ss_pred eCCceECccCcccCCCCC-CCCCCCEEEEE--CCEEEcHHHHHH
Confidence 34455664 77777775 55 45555332 244457777753
No 59
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=24.48 E-value=40 Score=22.23 Aligned_cols=38 Identities=24% Similarity=0.419 Sum_probs=24.6
Q ss_pred ccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhC
Q psy3219 36 SAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 36 ~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~ 77 (102)
.+....+|. +.|..|.. ++.+..|. =.+--+|..||..
T Consensus 23 ~a~~~~wH~~CF~C~~C~~-~L~~~~f~---~~g~~yC~~~y~~ 62 (169)
T 2rgt_A 23 KALDRHWHSKCLKCSDCHV-PLAERCFS---RGESVYCKDDFFK 62 (169)
T ss_dssp ECSSCEECTTTSBCTTTCC-BCCSCCEE---SSSCEECHHHHHH
T ss_pred EECCcEEccccCccCCCCC-cCCCCCcc---cCCeeeecccccc
Confidence 345567785 99999996 77665552 1344458777754
No 60
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=24.19 E-value=32 Score=21.51 Aligned_cols=38 Identities=18% Similarity=0.515 Sum_probs=26.8
Q ss_pred cccCccCceeCCCCCCcceeeeeEeeccCCC-CccchhhhhC
Q psy3219 37 AAESAKHQAKCNICKECPIIGFRYRCLKCFN-FDMCQTCFFQ 77 (102)
Q Consensus 37 ~~~~v~h~~~Cd~C~~~~i~G~RykC~~C~d-fdLC~~C~~~ 77 (102)
..+.+.++..|..|.. -..+.-|.|.+|.- |. ..|...
T Consensus 8 ~~e~~~~D~~C~VC~~-~t~~~l~pCRvC~RvfH--~~CL~r 46 (89)
T 1wil_A 8 PREPVVNDEMCDVCEV-WTAESLFPCRVCTRVFH--DGCLRR 46 (89)
T ss_dssp SCCCCCCSCCCTTTCC-CCSSCCSSCSSSSSCCC--HHHHHH
T ss_pred cccCCCCCcccCcccc-ccccceecccccccccc--Hhhccc
Confidence 3467788899999996 44667899999864 32 345544
No 61
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.07 E-value=42 Score=19.70 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=24.4
Q ss_pred cccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccchhhhhCC
Q psy3219 35 LSAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQG 78 (102)
Q Consensus 35 ~~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~~C~~~~ 78 (102)
+.+...++|. +.|..|.. ++.+..|. .=.+--+|..||...
T Consensus 31 v~a~~~~~H~~CF~C~~C~~-~L~~~~~~--~~~g~~yC~~~y~~~ 73 (91)
T 2d8y_A 31 LLANQQVFHISCFRCSYCNN-KLSLGTYA--SLHGRIYCKPHFNQL 73 (91)
T ss_dssp EECSSSEEETTTCBCTTTCC-BCCTTTCC--CSSSCCCCHHHHHHH
T ss_pred EEECCCEECCCCCeeCCCCC-CCCCCCcE--eECCEEECHHHHHHH
Confidence 3455567775 88888885 55543332 212334599998753
No 62
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.38 E-value=70 Score=18.09 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=25.6
Q ss_pred cccccCccCc--eeCCCCCCccee-eeeEeeccCCCCccchhhhhC
Q psy3219 35 LSAAESAKHQ--AKCNICKECPII-GFRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 35 ~~~~~~v~h~--~~Cd~C~~~~i~-G~RykC~~C~dfdLC~~C~~~ 77 (102)
+.+....+|. +.|..|.+ ++. |..|.=.. .+--+|..||..
T Consensus 30 ~~a~~~~~H~~CF~C~~C~~-~L~~g~~f~~~~-~~~~~C~~c~~~ 73 (81)
T 1x6a_A 30 MVAGEFKYHPECFACMSCKV-IIEDGDAYALVQ-HATLYCGKCHNE 73 (81)
T ss_dssp BCCTTCCBCTTSCBCTTTCC-BCCTTSCEEECS-SSCEEEHHHHHH
T ss_pred EEECCceeccccCCccCCCC-ccCCCCcEEEee-CCEEECHHHHHH
Confidence 4455677785 89999996 553 55553111 234568988865
No 63
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=20.28 E-value=68 Score=25.41 Aligned_cols=32 Identities=25% Similarity=0.712 Sum_probs=24.3
Q ss_pred ceeCCCCCCcceee---eeEeeccCCCCccchhhhhC
Q psy3219 44 QAKCNICKECPIIG---FRYRCLKCFNFDMCQTCFFQ 77 (102)
Q Consensus 44 ~~~Cd~C~~~~i~G---~RykC~~C~dfdLC~~C~~~ 77 (102)
...|+.|.. .+.| .+|+|..| .+..|..|...
T Consensus 529 ~t~C~~C~~-~l~gl~~qg~~C~~C-~~~vHk~C~~~ 563 (587)
T 3ky9_A 529 TTSCKACQM-LLRGTFYQGYRCHRC-RASAHKECLGR 563 (587)
T ss_dssp CCBCTTTCS-BCCSSSCCEEEETTT-CCEECSGGGGG
T ss_pred Ccccccccc-cccccccCCcCCCCC-CCccchhhhhc
Confidence 489999996 5555 57999998 45677888765
No 64
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.27 E-value=21 Score=20.22 Aligned_cols=39 Identities=18% Similarity=0.320 Sum_probs=24.0
Q ss_pred ccccCccCc--eeCCCCCCcceeeeeEeeccCCCCccch-hhhhC
Q psy3219 36 SAAESAKHQ--AKCNICKECPIIGFRYRCLKCFNFDMCQ-TCFFQ 77 (102)
Q Consensus 36 ~~~~~v~h~--~~Cd~C~~~~i~G~RykC~~C~dfdLC~-~C~~~ 77 (102)
.+....+|. +.|..|.. ++.+..|.-. .+--+|. .||..
T Consensus 26 ~a~~~~~H~~CF~C~~C~~-~L~~~~~~~~--~g~~yC~~~cy~~ 67 (76)
T 2cu8_A 26 SSLGKDWHKFCLKCERCSK-TLTPGGHAEH--DGKPFCHKPCYAT 67 (76)
T ss_dssp EETTEEEETTTCBCSSSCC-BCCTTSCEEE--TTEEECTTTHHHH
T ss_pred EECCeEeeCCCCCCCCCCC-ccCCCceEeE--CCEEecchHHHHH
Confidence 445566775 88999986 6665444322 2334588 68865
Done!