RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3219
(102 letters)
>gnl|CDD|239074 cd02334, ZZ_dystrophin, Zinc finger, ZZ type. Zinc finger present
in dystrophin and dystrobrevin. The ZZ motif
coordinates two zinc ions and most likely participates
in ligand binding or molecular scaffolding. Dystrophin
attaches actin filaments to an integral membrane
glycoprotein complex in muscle cells. The ZZ domain in
dystrophin has been shown to be essential for binding
to the membrane protein beta-dystroglycan.
Length = 49
Score = 90.9 bits (226), Expect = 5e-26
Identities = 36/49 (73%), Positives = 44/49 (89%)
Query: 45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY 93
AKCNICKE PI GFRYRCLKCFN+D+CQ+CFF G+ +K+HK +HPM+EY
Sbjct: 1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTSKSHKNSHPMKEY 49
>gnl|CDD|144236 pfam00569, ZZ, Zinc finger, ZZ type. Zinc finger present in
dystrophin, CBP/p300. ZZ in dystrophin binds
calmodulin. Putative zinc finger; binding not yet
shown. Four to six cysteine residues in its sequence
are responsible for coordinating zinc ions, to
reinforce the structure.
Length = 46
Score = 66.3 bits (162), Expect = 2e-16
Identities = 30/46 (65%), Positives = 37/46 (80%)
Query: 41 AKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKL 86
H CNICKECPIIGFRY CL+CF++D+CQ+CFF G+KA HK+
Sbjct: 1 IHHVYTCNICKECPIIGFRYHCLRCFDYDLCQSCFFTGRKAGGHKM 46
>gnl|CDD|197633 smart00291, ZnF_ZZ, Zinc-binding domain, present in Dystrophin,
CREB-binding protein. Putative zinc-binding domain
present in dystrophin-like proteins, and CREB-binding
protein/p300 homologues. The ZZ in dystrophin appears
to bind calmodulin. A missense mutation of one of the
conserved cysteines in dystrophin results in a patient
with Duchenne muscular dystrophy.
Length = 44
Score = 56.7 bits (137), Expect = 1e-12
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 42 KHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHK 85
H C+ C + PI+G RY CL C ++D+CQ+CF +G H
Sbjct: 2 HHSYSCDTCGK-PIVGVRYHCLVCPDYDLCQSCFAKGSAGGEHS 44
>gnl|CDD|149946 pfam09069, efhand_2, EF-hand. Members of this family adopt a
helix-loop-helix motif, as per other EF hand domains.
However, since they do not contain the canonical
pattern of calcium binding residues found in many EF
hand domains, they do not bind calcium ions. The main
function of this domain is the provision of specificity
in beta-dystroglycan recognition, though in dystrophin
it serves an additional role: stabilisation of the WW
domain (pfam00397), enhancing dystroglycan binding.
Length = 89
Score = 51.9 bits (125), Expect = 2e-10
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 11 QAVHFLSWLQQEPQSIVWLPVLHRLS 36
+ HFL WL EPQS+VWLPVLHRL+
Sbjct: 64 ELNHFLDWLMLEPQSLVWLPVLHRLA 89
>gnl|CDD|239078 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type. Zinc finger present
in potassium channel modulatory factor (PCMF) 1 and
related proteins. The ZZ motif coordinates two zinc
ions and most likely participates in ligand binding or
molecular scaffolding. Human potassium channel
modulatory factor 1 or FIGC has been shown to possess
intrinsic E3 ubiquitin ligase activity and to promote
ubiquitination.
Length = 49
Score = 48.9 bits (117), Expect = 2e-09
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQ 91
C+ C + G RY+CL C+++D+C C+ G + H HPMQ
Sbjct: 3 CDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTTERHLFDHPMQ 47
>gnl|CDD|239069 cd02249, ZZ, Zinc finger, ZZ type. Zinc finger present in
dystrophin, CBP/p300 and many other proteins. The ZZ
motif coordinates one or two zinc ions and most likely
participates in ligand binding or molecular
scaffolding. Many proteins containing ZZ motifs have
other zinc-binding motifs as well, and the majority
serve as scaffolds in pathways involving
acetyltransferase, protein kinase, or ubiqitin-related
activity. ZZ proteins can be grouped into the following
functional classes: chromatin modifying, cytoskeletal
scaffolding, ubiquitin binding or conjugating, and
membrane receptor or ion-channel modifying proteins.
Length = 46
Score = 48.6 bits (116), Expect = 2e-09
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY 93
C+ C + PI+G RY CL C +FD+C +C+ +GKK H H E
Sbjct: 3 CDGCLK-PIVGVRYHCLVCEDFDLCSSCYAKGKKG--HPPDHSFTEI 46
>gnl|CDD|239079 cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type. Zinc finger present
in Drosophila Mind bomb (D-mib) and related proteins.
The ZZ motif coordinates two zinc ions and most likely
participates in ligand binding or molecular
scaffolding. Mind bomb is an E3 ubiqitin ligase that
has been shown to regulate signaling by the Notch
ligand Delta in Drosophila melanogaster.
Length = 45
Score = 43.6 bits (103), Expect = 2e-07
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY 93
C+ C++ IIG R++C +C N+D+C TC+ K H L H Y
Sbjct: 3 CDTCRKQGIIGIRWKCAECPNYDLCTTCYHGDK----HDLEHRFYRY 45
>gnl|CDD|239075 cd02335, ZZ_ADA2, Zinc finger, ZZ type. Zinc finger present in
ADA2, a putative transcriptional adaptor, and related
proteins. The ZZ motif coordinates two zinc ions and
most likely participates in ligand binding or molecular
scaffolding.
Length = 49
Score = 40.7 bits (96), Expect = 2e-06
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 46 KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQ 91
C+ C + R +C +C +FD+C CF G + H+ H +
Sbjct: 2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEIGKHRNDHNYR 47
>gnl|CDD|239083 cd02343, ZZ_EF, Zinc finger, ZZ type. Zinc finger present in
proteins with an EF_hand motif. The ZZ motif
coordinates two zinc ions and most likely participates
in ligand binding or molecular scaffolding.
Length = 48
Score = 40.0 bits (93), Expect = 4e-06
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 59 RYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPM 90
RYRCL+C + D+C+TCF G K + H+ H M
Sbjct: 14 RYRCLQCTDMDLCKTCFLGGVKPEGHEDDHEM 45
>gnl|CDD|239084 cd02344, ZZ_HERC2, Zinc finger, ZZ type. Zinc finger present in
HERC2 and related proteins. HERC2 is a potential E3
ubiquitin protein ligase and/or guanine nucleotide
exchange factor. The ZZ motif coordinates two zinc ions
and most likely participates in ligand binding or
molecular scaffolding.
Length = 45
Score = 37.2 bits (86), Expect = 6e-05
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 46 KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNH 84
C+ C+ PI G R++C C +FD C+ CF K H
Sbjct: 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCFKTRKHNTRH 40
>gnl|CDD|239080 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type. Zinc finger present
in Drosophila ref(2)P, NBR1, Human sequestosome 1 and
related proteins. The ZZ motif coordinates two zinc
ions and most likely participates in ligand binding or
molecular scaffolding. Drosophila ref(2)P appears to
control the multiplication of sigma rhabdovirus. NBR1
(Next to BRCA1 gene 1 protein) interacts with
fasciculation and elongation protein zeta-1 (FEZ1) and
calcium and integrin binding protein (CIB), and may
function in cell signalling pathways. Sequestosome 1 is
a phosphotyrosine independent ligand for the Lck SH2
domain and binds noncovalently to ubiquitin via its UBA
domain.
Length = 43
Score = 36.9 bits (86), Expect = 7e-05
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Query: 45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPM 90
C+ C+ PI+G RY+CL C ++D+C++C +AK H M
Sbjct: 1 VICDGCQG-PIVGVRYKCLVCPDYDLCESC-----EAKGVHPEHAM 40
>gnl|CDD|239085 cd02345, ZZ_dah, Zinc finger, ZZ type. Zinc finger present in
Drosophila dah and related proteins. The ZZ motif
coordinates two zinc ions and most likely participates
in ligand binding or molecular scaffolding. Dah
(discontinuous actin hexagon) is a membrane associated
protein essential for cortical furrow formation in
Drosophila. .
Length = 49
Score = 36.0 bits (83), Expect = 2e-04
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQE 92
C+ C++ I G R+ C C ++ +C C+ +G++ K H H M E
Sbjct: 3 CSACRKQDISGIRFPCQVCRDYSLCLGCYTKGRETKRHNSLHIMYE 48
>gnl|CDD|239081 cd02341, ZZ_ZZZ3, Zinc finger, ZZ type. Zinc finger present in
ZZZ3 (ZZ finger containing 3) and related proteins. The
ZZ motif coordinates two zinc ions and most likely
participates in ligand binding or molecular
scaffolding.
Length = 48
Score = 35.5 bits (82), Expect = 2e-04
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 46 KCNICKECPIIGFRYRCLKCFN--FDMCQTCFFQG 78
KC+ C PI G RY C +C + FD+CQ C +G
Sbjct: 2 KCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKG 36
>gnl|CDD|227445 COG5114, COG5114, Histone acetyltransferase complex SAGA/ADA,
subunit ADA2 [Chromatin structure and dynamics].
Length = 432
Score = 34.7 bits (79), Expect = 0.003
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHP 89
C++C +C +C D+C CF G + H H
Sbjct: 8 CDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPYHG 50
>gnl|CDD|239082 cd02342, ZZ_UBA_plant, Zinc finger, ZZ type. Zinc finger present
in plant ubiquitin-associated (UBA) proteins. The ZZ
motif coordinates a zinc ion and most likely
participates in ligand binding or molecular
scaffolding.
Length = 43
Score = 28.7 bits (64), Expect = 0.084
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 46 KCNICKECPIIGFRYRCLKCFNFDMCQTCF 75
+C+ C PI G RY+ ++D+C CF
Sbjct: 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICF 31
>gnl|CDD|239077 cd02337, ZZ_CBP, Zinc finger, ZZ type. Zinc finger present in
CBP/p300 and related proteins. The ZZ motif coordinates
two zinc ions and most likely participates in ligand
binding or molecular scaffolding. CREB-binding protein
(CBP) is a large multidomain protein that provides
binding sites for transcriptional coactivators, the
role of the ZZ domain in CBP/p300 is unclear.
Length = 41
Score = 27.1 bits (60), Expect = 0.31
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLT 87
CN CK + R+ C C ++D+C TC+ K HK+
Sbjct: 3 CNECKH--HVETRWHCTVCEDYDLCITCY--NTKNHPHKME 39
>gnl|CDD|239076 cd02336, ZZ_RSC8, Zinc finger, ZZ type. Zinc finger present in
RSC8 and related proteins. RSC8 is a component of the
RSC complex, which is closely related to the SWI/SNF
complex and is involved in remodeling chromatin
structure. The ZZ motif coordinates a zinc ion and most
likely participates in ligand binding or molecular
scaffolding.
Length = 45
Score = 26.1 bits (58), Expect = 0.83
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 47 CNIC-KECPIIGFRYRCLKCFNFDMCQTCFFQGK 79
C C +C RY LK +D+C +C+ +G+
Sbjct: 3 CFTCGNDC--TRVRYHNLKAKKYDLCPSCYQEGR 34
>gnl|CDD|220261 pfam09484, Cas_TM1802, CRISPR-associated protein TM1802
(cas_TM1802). Clusters of short DNA repeats with
non-homologous spacers, which are found at regular
intervals in the genomes of phylogenetically distinct
prokaryotic species, comprise a family with recognisable
features. This family is known as CRISPR (short for
Clustered, Regularly Interspaced Short Palindromic
Repeats). A number of protein families appear only in
association with these repeats and are designated Cas
(CRISPR-Associated) proteins. This minor cas protein is
found in at least five prokaryotic genomes:
Methanosarcina mazei, Sulfurihydrogenibium azorense,
Thermotoga maritima, Carboxydothermus hydrogenoformans,
and Dictyoglomus thermophilum, the first of which is
archaeal while the rest are bacterial.
Length = 584
Score = 26.2 bits (58), Expect = 4.1
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 22/69 (31%)
Query: 41 AKHQAKCNIC-KECPIIGFRYRCLKCF------------------NFDMCQTCFFQ---G 78
+K + C+IC KE + G K + NF +C+ C + G
Sbjct: 186 SKEEGVCSICGKEDEVTGDVDTPFKFYTTDKPGFASGLSKKNAWKNFPICKECALKLLAG 245
Query: 79 KKAKNHKLT 87
KK +KL+
Sbjct: 246 KKYIRNKLS 254
>gnl|CDD|236644 PRK10049, pgaA, outer membrane protein PgaA; Provisional.
Length = 765
Score = 25.8 bits (57), Expect = 4.7
Identities = 8/29 (27%), Positives = 11/29 (37%), Gaps = 8/29 (27%)
Query: 15 FLSWLQQEPQSIVWLPVLHRLSAAESAKH 43
LSWL+Q + LS + A
Sbjct: 1 ALSWLRQALK--------SALSNNQIADW 21
>gnl|CDD|224356 COG1439, COG1439, Predicted nucleic acid-binding protein, consists
of a PIN domain and a Zn-ribbon module [General function
prediction only].
Length = 177
Score = 25.4 bits (56), Expect = 5.3
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 5/25 (20%)
Query: 55 IIGFRYRCLKCF-----NFDMCQTC 74
+ +R RC C D C C
Sbjct: 135 VRKWRLRCHGCKRIFPEPKDFCPIC 159
>gnl|CDD|233755 TIGR02165, cas_GSU0054, CRISPR-associated protein GSU0054/csb2,
Dpsyc system. This model represents a
CRISPR-associated protein from the Dpsyc subtype, named
for Desulfotalea psychrophila LSv54. CRISPR systems
confer resistance in prokaryotes to invasive DNA or
RNA, including phage and plasmids. CRISPR-associated
proteins typically are found near CRISPR repeats and
other CRISPR-associated proteins, have low levels of
sequence identify, have sequence relationships that
suggest lateral transfer, and show some sequence
similarity to DNA-active proteins such as helicases and
repair proteins [Mobile and extrachromosomal element
functions, Other].
Length = 487
Score = 25.5 bits (56), Expect = 5.9
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 1 MRRTLGPYPQQAVHFLSWLQQEPQSIVWLP 30
R G + + L WL+ P + P
Sbjct: 40 ARGEKGELSDEDLAALKWLEALPPPAIRAP 69
>gnl|CDD|233996 TIGR02750, TraN_Ftype, type-F conjugative transfer system
mating-pair stabilization protein TraN. TraN is a large
cysteine-rich outer membrane protein involved in the
mating-pair stabilization (adhesin) component of the
F-type conjugative plamid transfer system. TraN is
believed to interact with the core type IV secretion
system apparatus through the TraV protein.
Length = 572
Score = 24.8 bits (54), Expect = 9.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 80 KAKNHKLTHPMQEYCTTELL 99
KAK +KLT + EYC ++L
Sbjct: 466 KAKENKLTVYLGEYCAKKVL 485
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.137 0.477
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,842,295
Number of extensions: 351341
Number of successful extensions: 427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 423
Number of HSP's successfully gapped: 31
Length of query: 102
Length of database: 10,937,602
Length adjustment: 68
Effective length of query: 34
Effective length of database: 7,921,530
Effective search space: 269332020
Effective search space used: 269332020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.3 bits)