RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3219
(102 letters)
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 63
Score = 87.2 bits (216), Expect = 1e-24
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 36 SAAESAKHQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCT 95
S + H +C+ C ++GFRYRC +C N+ +CQ CF++G +H H M+EY +
Sbjct: 3 SGSSGVFHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTS 62
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Length = 82
Score = 63.5 bits (154), Expect = 4e-15
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 36 SAAESAKHQA-KCNICKECPIIGFRYRCLKC---FNFDMCQTCFFQGKKAKNHKLTHPMQ 91
+ + +H KC+ C PI G R+ C C + D C +C + HK H ++
Sbjct: 12 AESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLE 71
Query: 92 EYCT 95
Sbjct: 72 PIYR 75
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.44.1.6
Length = 98
Score = 56.6 bits (136), Expect = 3e-12
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 43 HQAKCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTE 97
CN CK+ PI G Y+C +C + +CQ CF L+H
Sbjct: 30 LGIPCNNCKQFPIEGKCYKCTECIEYHLCQECF-----DSYCHLSHTFTFREKRN 79
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 56.2 bits (135), Expect = 4e-11
Identities = 19/30 (63%), Positives = 26/30 (86%)
Query: 11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAES 40
+A FL W++ EPQS+VWLPVLHR++AAE+
Sbjct: 232 EAALFLDWMRLEPQSMVWLPVLHRVAAAET 261
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR
{Mus musculus} SCOP: g.44.1.6
Length = 52
Score = 46.6 bits (111), Expect = 9e-09
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 8/47 (17%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEY 93
CN CK + R+ C C ++D+C C+ K+H TH M ++
Sbjct: 9 CNECK--HHVETRWHCTVCEDYDLCINCY----NTKSH--THKMVKW 47
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding
domain, PDI-like protein, structural genomics; NMR
{Arabidopsis thaliana} SCOP: g.49.1.3
Length = 89
Score = 31.4 bits (71), Expect = 0.011
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 46 KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNH 84
C+ C+E + Y C +C +FD+ C ++
Sbjct: 49 TCDKCEE-EGTIWSYHCDEC-DFDLHAKCALNEDTKESG 85
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 29.5 bits (65), Expect = 0.15
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 50 CKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTH 88
C +C + + L + +C +F G NH + H
Sbjct: 218 CSKCDMRENLWLNLTDGSI-LCGRRYFDGSGGNNHAVEH 255
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.22
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 16/50 (32%)
Query: 8 YPQQAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIG 57
+ Q ++ L WL + P + L LS S CP+IG
Sbjct: 209 FTQ-GLNILEWL-ENPSNTPDKDYL--LSIPIS------------CPLIG 242
Score = 25.8 bits (56), Expect = 3.4
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 23 PQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRY 60
PQS+ L + R + A S Q++ + R+
Sbjct: 383 PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 1.0
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 19 LQQEPQSIV-W----LPVLHRLSAAESAKHQA 45
L QEP+SI W L L AA Q
Sbjct: 80 LTQEPESIRKWREEQRKRLQELDAASKVMEQE 111
>3h9m_A P-aminobenzoate synthetase, component I; para-aminobenzoate
synthetase, cytophaga hutchinsonii,YP_678417.1,
CHU_1808; HET: PGE; 1.57A {Cytophaga hutchinsonii atcc
33406}
Length = 436
Score = 25.8 bits (57), Expect = 2.7
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 1 MRRTLGPYPQQAVHF----LSWLQQEPQSIVWL 29
M + P + F L WL+ I +L
Sbjct: 1 MSLSFTPLHTTSEAFIEKALPWLEDRYFHIAYL 33
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled
coil, cytoplasm, cytoskeleton, disease mutation,
ligase, metal-binding; NMR {Homo sapiens}
Length = 101
Score = 24.9 bits (54), Expect = 3.6
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCF----FQGKKAKNHKLTHPMQE 92
C C + P C+ C C C K H+L P+ +
Sbjct: 6 CQFCDQDPAQDAVKTCVTCEVS-YCDECLKATHPNKKPFTGHRLIEPIPD 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.5 bits (52), Expect = 6.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 22 EPQSIVWLPVLHRLSAAESA 41
E Q++ L +L A +SA
Sbjct: 18 EKQALKKLQASLKLYADDSA 37
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2;
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.85.1.2
Length = 59
Score = 23.5 bits (50), Expect = 6.7
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 36 SAAESAKHQAKCNICKECPIIGFRYRCLKC 65
S + + C C + RY C +C
Sbjct: 3 SGSSGMEPAGPCGFCPAGEVQPARYTCPRC 32
>1wg2_A Zinc finger (AN1-like) family protein; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, DNA binding protein; NMR {Arabidopsis
thaliana} SCOP: g.80.1.1
Length = 64
Score = 23.6 bits (51), Expect = 7.2
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 36 SAAESAKHQAKCNIC-KECPIIGFRYRCLKCF 66
+ + +C C K+ ++GF+ +C F
Sbjct: 7 GPSRPVRPNNRCFSCNKKVGVMGFKCKCGSTF 38
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair,
loop-rich domain, relaxation, DNA binding protein; NMR
{Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Length = 111
Score = 24.2 bits (52), Expect = 7.9
Identities = 13/49 (26%), Positives = 17/49 (34%)
Query: 49 ICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCTTE 97
IC+EC + F+ C C K K T QEY +
Sbjct: 7 ICEECGKEFMDSYLMDHFDLPTCDDCRDADDKHKLITKTEAKQEYLLKD 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.137 0.477
Gapped
Lambda K H
0.267 0.0466 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,491,997
Number of extensions: 68728
Number of successful extensions: 309
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 38
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (24.1 bits)