RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3219
         (102 letters)



>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 97

 Score = 58.2 bits (141), Expect = 2e-13
 Identities = 19/30 (63%), Positives = 26/30 (86%)

Query: 11 QAVHFLSWLQQEPQSIVWLPVLHRLSAAES 40
          +A  FL W++ EPQS+VWLPVLHR++AAE+
Sbjct: 68 EAALFLDWMRLEPQSMVWLPVLHRVAAAET 97


>d2dipa1 g.44.1.6 (A:8-92) Zinc finger ZZ-type-containing protein
          2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 85

 Score = 55.0 bits (132), Expect = 4e-12
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 41 AKHQA-KCNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYCT 95
           KH    CN CK+ PI G  Y+C +C  + +CQ C F      +H  T   +    
Sbjct: 20 DKHLGIPCNNCKQFPIEGKCYKCTECIEYHLCQEC-FDSYCHLSHTFTFREKRNQK 74


>d2fc7a1 g.44.1.6 (A:8-76) Zinc finger ZZ-type-containing protein
          3, ZZZ3 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 69

 Score = 54.3 bits (130), Expect = 5e-12
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 43 HQAKCNICKECPIIGFRYRCLKC---FNFDMCQTCFFQGKKAKNHKLTHPMQ 91
             KC+ C   PI G R+ C  C    + D C +C     +   HK  H ++
Sbjct: 13 VGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLE 64


>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 52

 Score = 45.2 bits (107), Expect = 1e-08
 Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 8/48 (16%)

Query: 47 CNICKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTHPMQEYC 94
          CN CK    +  R+ C  C ++D+C  C+           TH M ++ 
Sbjct: 9  CNECKH--HVETRWHCTVCEDYDLCINCY------NTKSHTHKMVKWG 48


>d2g45a1 g.44.1.5 (A:173-285) Ubiquitin carboxyl-terminal
          hydrolase 5, UBP5 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 113

 Score = 24.5 bits (53), Expect = 1.7
 Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 1/39 (2%)

Query: 50 CKECPIIGFRYRCLKCFNFDMCQTCFFQGKKAKNHKLTH 88
          C +C +    +  L   +  +C   +F G    NH + H
Sbjct: 27 CSKCDMRENLWLNLTDGSI-LCGRRYFDGSGGNNHAVEH 64


>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing
          protein 2,  ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 46

 Score = 23.3 bits (50), Expect = 2.8
 Identities = 7/31 (22%), Positives = 10/31 (32%)

Query: 45 AKCNICKECPIIGFRYRCLKCFNFDMCQTCF 75
            C  C    +   RY C +C        C+
Sbjct: 5  GPCGFCPAGEVQPARYTCPRCNAPYCSLRCY 35


>d1s5pa_ c.31.1.5 (A:) NAD-dependent deacetylase CobB {Escherichia
           coli [TaxId: 562]}
          Length = 235

 Score = 22.8 bits (48), Expect = 9.3
 Identities = 9/64 (14%), Positives = 15/64 (23%), Gaps = 4/64 (6%)

Query: 8   YPQQAVHFLSWLQQEPQSIVWLPVLHRLSAAESAKHQAKCNICKECPIIGFRYRCLKCFN 67
            P  A   L+ LQ        L         ++   +A             + RC +   
Sbjct: 66  QPNAAHLALAKLQDALGDRFLL----VTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQ 121

Query: 68  FDMC 71
               
Sbjct: 122 VLDW 125


>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2
          {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 74

 Score = 22.2 bits (47), Expect = 9.7
 Identities = 8/22 (36%), Positives = 12/22 (54%), Gaps = 1/22 (4%)

Query: 46 KCNIC-KECPIIGFRYRCLKCF 66
          +C +C K+  + GF  RC   F
Sbjct: 27 RCFMCRKKVGLTGFDCRCGNLF 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.137    0.477 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 391,584
Number of extensions: 16169
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 21
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 47 (22.2 bits)