BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3224
(1278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041
+ + A++ +A+++ P A+ W G ++ D+A + + +A++ P S W L
Sbjct: 16 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 75
Query: 1042 ANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECP 1100
N ++ +A +K +P AE W + G D A KAL+ P
Sbjct: 76 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 37.4 bits (85), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 42/106 (39%)
Query: 1001 AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEK 1060
A+ W G ++ D+A + + +A++ P S W L N ++ +A +K
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 1061 GRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILW 1106
+P AE W + G D A KAL+ P + W
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAW 106
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 11/111 (9%)
Query: 598 VYRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELWL----ALARL 649
Y+KALE P S W A + D ++A +A+E P S E W A +
Sbjct: 23 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82
Query: 650 ETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSL 700
Y+ A + KA E P + W L A+ D+ I+ +L
Sbjct: 83 GDYDEAIEYYQKALELDPRSAEAWYN---LGNAYYKQGDYDEAIEYYQKAL 130
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 55/148 (37%), Gaps = 16/148 (10%)
Query: 748 TWMEDAESCANQGAYECARAIYAQALATFPSKKSIW--LRAAYFEKNHGTRESLETLLQK 805
W + QG Y+ A Y +AL P W L AY+++ G + QK
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ--GDYDEAIEYYQK 60
Query: 806 AVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLM 865
A+ P+S W L AY+++ G + QKA+ P+S W
Sbjct: 61 ALELDPRSAEAWYN----------LGNAYYKQ--GDYDEAIEYYQKALELDPRSAEAWYN 108
Query: 866 GAKSKWLAGDVPAARGILSLAFQANPNS 893
+ + GD A A + +P S
Sbjct: 109 LGNAYYKQGDYDEAIEYYQKALELDPRS 136
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 39.3 bits (90), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 42/101 (41%)
Query: 1001 AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEK 1060
A+ W G ++ D+A + + +A++ P++ W L N ++ +A +K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 1061 GRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPN 1101
PN AE W + G D A KAL+ PN
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 44/89 (49%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041
+ + A++ +A++++P+ A+ W G ++ D+A + + +A++ P++ W L
Sbjct: 24 DYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNL 83
Query: 1042 ANLEERRKMLIKARSVLEKGRLRNPNCAE 1070
N ++ +A +K PN AE
Sbjct: 84 GNAYYKQGDYDEAIEYYQKALELYPNNAE 112
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 597 RVYRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELWLALA----R 648
Y+KALE PN+ W A + D ++A +A+E P + E W L +
Sbjct: 30 EYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYK 89
Query: 649 LETYENARKVLNKARENIPTD 669
Y+ A + KA E P +
Sbjct: 90 QGDYDEAIEYYQKALELYPNN 110
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr
Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr
Motif
Length = 125
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 43/101 (42%)
Query: 1001 AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEK 1060
A+ W G ++ D+A + + +A++ P++ W L N ++ +A +K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 1061 GRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPN 1101
+PN AE W + G D A KAL+ PN
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/89 (21%), Positives = 44/89 (49%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041
+ + A++ +A+++ P+ A+ W G ++ D+A + + +A++ P++ W L
Sbjct: 24 DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83
Query: 1042 ANLEERRKMLIKARSVLEKGRLRNPNCAE 1070
N ++ +A +K +PN AE
Sbjct: 84 GNAYYKQGDYDEAIEYYQKALELDPNNAE 112
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 597 RVYRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELWLALA----R 648
Y+KALE PN+ W A + D ++A +A+E P + E W L +
Sbjct: 30 EYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89
Query: 649 LETYENARKVLNKARENIPTDRQ 671
Y+ A + KA E P + +
Sbjct: 90 QGDYDEAIEYYQKALELDPNNAE 112
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 981 DNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK 1029
DN RAL L +E ++ PD+ + G++ E+ + D A DT++Q I+
Sbjct: 21 DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
Length = 99
Score = 36.2 bits (82), Expect = 0.12, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 981 DNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK 1029
DN RAL L +E ++ PD+ + G++ E+ + D A DT++Q I+
Sbjct: 20 DNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 68
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 1182 LAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQA 1232
LAV + C NK + R +F+++ +DP G AW F I G E QA
Sbjct: 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG-EHDQA 426
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
Length = 530
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 540 KGCEENQTSEDLW---LEAARLQPVDTARAVIAQAVRHIPTSVRIWIKAADLETETKAK- 595
K EEN D W + A+ QP+D AR + V P+S R W +E E KAK
Sbjct: 4 KKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFW--KLYIEAEIKAKN 61
Query: 596 ----RRVYRKALEHIPNSVRLWK 614
+++++ L + + + LWK
Sbjct: 62 YDKVEKLFQRCLMKVLH-IDLWK 83
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 35.0 bits (79), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 969 VMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAI 1028
+M++ L D A LL +A+K+ P+ + W G++ +K + AH FS A+
Sbjct: 105 LMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL 164
Query: 1029 KKCPHSVPL 1037
C + V L
Sbjct: 165 THCKNKVSL 173
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 33.5 bits (75), Expect = 0.87, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 7/144 (4%)
Query: 971 IQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKK 1030
I A L ++ LERAL D+A+++ A + G + K + +A D F +A++
Sbjct: 61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120
Query: 1031 CPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANT 1090
+ L+ ML + + + A L++ N N E G+ D A +
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180
Query: 1091 MMAKALQECP-------NAGILWA 1107
A ++ P NAG+ +A
Sbjct: 181 QFAAVTEQDPGHADAFYNAGVTYA 204
>pdb|2LSE|A Chain A, Solution Nmr Structure Of De Novo Designed Four Helix Bundle
Protein, Northeast Structural Genomics Consortium (Nesg)
Target Or188
Length = 101
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
Query: 983 LERALQLLDEAIKVFPDFAKLWM------MKGQIEE--QKNLLDKAHDTFSQAIKKCPHS 1034
LE+ ++LDE PD A+ + +K ++EE KN+++K D Q K P++
Sbjct: 9 LEKLEKILDEVTDGAPDEARERIEKLAKDVKDELEEGDAKNMIEKFRDEMEQMYKDAPNA 68
Query: 1035 VPLWIMLANLEERRKMLIKARSVLEKG 1061
V M LEE K+L KA S++ +G
Sbjct: 69 V----MEQLLEEIEKLLKKAGSLVPRG 91
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With
A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex With
A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex With
A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex With
A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With
A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex With
A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp And
A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp And
A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032
N+E A++L +A++VFP+FA + +Q+ L +A + +AI+ P
Sbjct: 24 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 74
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032
N+E A++L +A++VFP+FA + +Q+ L +A + +AI+ P
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 980 LDNLERALQLLDEA-------IKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032
L NL +AL L+EA I+ P+FA W G + + + A F +A+ P
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 1033 HSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMM 1092
+ + +I L N+ + ++ +A + + +PN A + V GL D+A
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTY 260
Query: 1093 AKALQECPN 1101
+A++ P+
Sbjct: 261 RRAIELQPH 269
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 41/101 (40%)
Query: 1001 AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEK 1060
A+ W G ++ KA + + +A++ P++ W L N ++ KA +K
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 1061 GRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPN 1101
+PN A+ W + G A KAL+ PN
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
>pdb|3I9K|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad
pdb|3I9K|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad
pdb|3I9L|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
N1-Cidpr
pdb|3I9L|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
N1-Cidpr
Length = 258
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 796 RESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEK-------NHGTRES---L 845
RES + + AH + EV +++ + K + ++F K N TR L
Sbjct: 136 RESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYGLPNLTNKVTRVKVIVL 195
Query: 846 ETLLQKAVAHCPKSEVLWLMG-AKSKWLAGD-VPAARGILSLAFQANPNSEEIWLA 899
L +K + C +L L K+K A D V R +L L NPN+ E LA
Sbjct: 196 HRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 251
>pdb|1LBE|A Chain A, Aplysia Adp Ribosyl Cyclase
pdb|1LBE|B Chain B, Aplysia Adp Ribosyl Cyclase
pdb|1R12|A Chain A, Native Aplysia Adp Ribosyl Cyclase
pdb|1R12|B Chain B, Native Aplysia Adp Ribosyl Cyclase
pdb|1R15|A Chain A, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|B Chain B, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|C Chain C, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|D Chain D, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|E Chain E, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|F Chain F, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|G Chain G, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R15|H Chain H, Aplysia Adp Ribosyl Cyclase With Bound Nicotinamide And
R5p
pdb|1R16|A Chain A, Aplysia Adp Ribosyl Cyclase With Bound Pyridylcarbinol And
R5p
pdb|1R16|B Chain B, Aplysia Adp Ribosyl Cyclase With Bound Pyridylcarbinol And
R5p
pdb|3I9J|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With A
Substrate Analog And A Product Nicotinamide
pdb|3I9J|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With A
Substrate Analog And A Product Nicotinamide
pdb|3I9O|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ribo-2'f-Adp Ribose
pdb|3I9O|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ribo-2'f-Adp Ribose
Length = 258
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 796 RESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEK-------NHGTRES---L 845
RES + + AH + EV +++ + K + ++F K N TR L
Sbjct: 136 RESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVL 195
Query: 846 ETLLQKAVAHCPKSEVLWLMG-AKSKWLAGD-VPAARGILSLAFQANPNSEEIWLA 899
L +K + C +L L K+K A D V R +L L NPN+ E LA
Sbjct: 196 HRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 251
>pdb|1R0S|A Chain A, Crystal Structure Of Adp-Ribosyl Cyclase Glu179ala Mutant
pdb|1R0S|B Chain B, Crystal Structure Of Adp-Ribosyl Cyclase Glu179ala Mutant
Length = 258
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 796 RESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEK-------NHGTRES---L 845
RES + + AH + EV +++ + K + ++F K N TR L
Sbjct: 136 RESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYALPNLTNKVTRVKVIVL 195
Query: 846 ETLLQKAVAHCPKSEVLWLMG-AKSKWLAGD-VPAARGILSLAFQANPNSEEIWLA 899
L +K + C +L L K+K A D V R +L L NPN+ E LA
Sbjct: 196 HRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 251
>pdb|3ZWO|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|C Chain C, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|D Chain D, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|E Chain E, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|F Chain F, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|G Chain G, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
pdb|3ZWO|H Chain H, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Reaction Intermediate
Length = 259
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 796 RESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEK-------NHGTRES---L 845
RES + + AH + EV +++ + K + ++F K N TR L
Sbjct: 137 RESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVL 196
Query: 846 ETLLQKAVAHCPKSEVLWLMG-AKSKWLAGD-VPAARGILSLAFQANPNSEEIWLA 899
L +K + C +L L K+K A D V R +L L NPN+ E LA
Sbjct: 197 HRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 252
>pdb|3ZWM|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|C Chain C, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|D Chain D, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|E Chain E, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|F Chain F, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|G Chain G, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWM|H Chain H, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Substrate Nad And Product Cadpr
pdb|3ZWN|A Chain A, Crystal Structure Of Aplysia Cyclase Complexed With
Substrate Ngd And Product Cgdpr
pdb|3ZWN|B Chain B, Crystal Structure Of Aplysia Cyclase Complexed With
Substrate Ngd And Product Cgdpr
pdb|3ZWP|A Chain A, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|B Chain B, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|C Chain C, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|D Chain D, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|E Chain E, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|F Chain F, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|G Chain G, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWP|H Chain H, Crystal Structure Of Adp Ribosyl Cyclase Complexed With
Ara- 2'f-Adp-Ribose At 2.1 Angstrom
pdb|3ZWV|A Chain A, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|B Chain B, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|C Chain C, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|D Chain D, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|E Chain E, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|F Chain F, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|G Chain G, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWV|H Chain H, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|A Chain A, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|B Chain B, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|C Chain C, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|D Chain D, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|E Chain E, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|F Chain F, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|G Chain G, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWW|H Chain H, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With
Ara-2'f-Adp-Ribose At 2.3 Angstrom
pdb|3ZWX|A Chain A, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|B Chain B, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|C Chain C, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|D Chain D, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|E Chain E, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|F Chain F, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|G Chain G, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWX|H Chain H, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose
pdb|3ZWY|A Chain A, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|B Chain B, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|C Chain C, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|D Chain D, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|E Chain E, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|F Chain F, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|G Chain G, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
pdb|3ZWY|H Chain H, Crystal Structure Of Adp-Ribosyl Cyclase Complexed With 8-
Bromo-Adp-Ribose And Cyclic 8-Bromo-Cyclic-Adp-Ribose
Length = 260
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 12/116 (10%)
Query: 796 RESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEK-------NHGTRES---L 845
RES + + AH + EV +++ + K + ++F K N TR L
Sbjct: 138 RESFWGMASSSYAHSAEGEVTYMVDGSNPKVPAYRPDSFFGKYELPNLTNKVTRVKVIVL 197
Query: 846 ETLLQKAVAHCPKSEVLWLMG-AKSKWLAGD-VPAARGILSLAFQANPNSEEIWLA 899
L +K + C +L L K+K A D V R +L L NPN+ E LA
Sbjct: 198 HRLGEKIIEKCGAGSLLDLEKLVKAKHFAFDCVENPRAVLFLLCSDNPNARECRLA 253
>pdb|2AF0|A Chain A, Structure Of The Regulator Of G-Protein Signaling Domain
Of Rgs2
Length = 146
Score = 30.0 bits (66), Expect = 9.1, Method: Composition-based stats.
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 8/82 (9%)
Query: 586 ADLETETKAKRRVYRKALEHIPNSVRLWKAAVELEDPEDARILLSRAV---ECCPTSVEL 642
ADL TE +Y ++++ P +LW A + + RA E C ++E
Sbjct: 1 ADLGTEN-----LYFQSMKPSPEEAQLWSEAFDELLASKYGLAAFRAFLKSEFCEENIEF 55
Query: 643 WLALARLETYENARKVLNKARE 664
WLA + ++ +K+ +KAR+
Sbjct: 56 WLACEDFKKTKSPQKLSSKARK 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,093,115
Number of Sequences: 62578
Number of extensions: 1335539
Number of successful extensions: 3477
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 3387
Number of HSP's gapped (non-prelim): 92
length of query: 1278
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1168
effective length of database: 8,089,757
effective search space: 9448836176
effective search space used: 9448836176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)