Query psy3224
Match_columns 1278
No_of_seqs 1206 out of 4550
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 19:31:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3224.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3224hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0495|consensus 100.0 4E-156 9E-161 1296.6 92.1 900 61-1274 13-913 (913)
2 KOG0495|consensus 100.0 2.6E-82 5.7E-87 706.3 71.9 664 382-1110 218-892 (913)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-49 2.7E-54 529.0 94.5 726 446-1254 138-879 (899)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 4.1E-49 8.9E-54 524.1 94.6 768 445-1256 34-847 (899)
5 PF06424 PRP1_N: PRP1 splicing 100.0 1.4E-54 3E-59 404.5 10.3 127 70-214 1-127 (133)
6 PRK11447 cellulose synthase su 100.0 3.8E-40 8.1E-45 440.2 82.5 675 479-1240 31-739 (1157)
7 PRK11447 cellulose synthase su 100.0 3.6E-38 7.8E-43 421.2 76.5 639 512-1247 25-706 (1157)
8 KOG4626|consensus 100.0 2.4E-39 5.3E-44 360.1 39.5 457 649-1240 61-518 (966)
9 KOG4626|consensus 100.0 1.6E-38 3.5E-43 353.6 37.1 447 747-1253 49-497 (966)
10 PF06424 PRP1_N: PRP1 splicing 100.0 2.7E-41 6E-46 315.4 9.9 133 239-389 1-133 (133)
11 PRK09782 bacteriophage N4 rece 100.0 2.3E-34 4.9E-39 366.1 73.7 663 492-1246 55-745 (987)
12 KOG2002|consensus 100.0 4.1E-34 8.9E-39 336.6 64.6 653 515-1225 41-763 (1018)
13 KOG2002|consensus 100.0 2.2E-32 4.7E-37 322.2 62.5 625 477-1129 42-742 (1018)
14 KOG1915|consensus 100.0 2.6E-31 5.7E-36 288.7 56.0 470 564-1113 58-550 (677)
15 PRK09782 bacteriophage N4 rece 100.0 4.8E-31 1E-35 335.8 68.0 670 447-1227 58-759 (987)
16 KOG1915|consensus 100.0 4.2E-30 9.1E-35 279.4 51.5 463 495-1012 52-551 (677)
17 PLN03077 Protein ECB2; Provisi 100.0 5.4E-28 1.2E-32 316.4 68.2 654 491-1257 61-738 (857)
18 TIGR00990 3a0801s09 mitochondr 100.0 1.2E-28 2.6E-33 310.4 52.4 266 948-1249 308-579 (615)
19 TIGR00990 3a0801s09 mitochondr 100.0 1.3E-27 2.7E-32 301.1 52.7 431 719-1214 137-578 (615)
20 KOG2047|consensus 100.0 8.4E-25 1.8E-29 246.5 61.4 613 504-1241 16-725 (835)
21 KOG2047|consensus 100.0 7E-25 1.5E-29 247.1 58.3 643 539-1269 17-719 (835)
22 PLN03077 Protein ECB2; Provisi 100.0 1.7E-24 3.7E-29 283.5 63.9 629 512-1254 48-699 (857)
23 PRK15174 Vi polysaccharide exp 100.0 1E-24 2.2E-29 273.5 47.4 339 746-1103 42-386 (656)
24 PRK10049 pgaA outer membrane p 99.9 1.3E-24 2.9E-29 278.3 47.2 406 746-1246 15-461 (765)
25 PRK15174 Vi polysaccharide exp 99.9 1.6E-24 3.5E-29 271.7 46.2 348 833-1229 49-408 (656)
26 KOG2076|consensus 99.9 4.2E-22 9.1E-27 234.9 62.3 652 495-1238 153-892 (895)
27 PRK10049 pgaA outer membrane p 99.9 6.2E-24 1.3E-28 272.2 50.0 401 618-1107 27-465 (765)
28 PLN03081 pentatricopeptide (PP 99.9 1.5E-22 3.3E-27 258.8 51.2 478 672-1257 89-575 (697)
29 KOG1127|consensus 99.9 2.2E-21 4.9E-26 228.4 52.2 492 725-1231 474-1026(1238)
30 KOG0547|consensus 99.9 1E-22 2.2E-27 223.9 36.7 434 748-1248 117-573 (606)
31 KOG2076|consensus 99.9 4.7E-20 1E-24 217.7 55.6 656 447-1129 153-892 (895)
32 PLN03218 maturation of RBCL 1; 99.9 2E-19 4.2E-24 231.6 66.3 482 611-1133 375-877 (1060)
33 KOG0547|consensus 99.9 2.3E-21 5E-26 213.3 36.9 378 715-1102 121-570 (606)
34 PLN03218 maturation of RBCL 1; 99.9 2E-18 4.2E-23 222.4 69.2 466 623-1130 354-839 (1060)
35 PRK14574 hmsH outer membrane p 99.9 6.2E-20 1.4E-24 230.0 53.5 446 743-1248 31-520 (822)
36 PLN03081 pentatricopeptide (PP 99.9 6.6E-20 1.4E-24 234.6 49.1 438 591-1098 102-557 (697)
37 KOG1173|consensus 99.9 4E-20 8.7E-25 207.9 40.1 477 710-1255 17-532 (611)
38 KOG1155|consensus 99.9 1.6E-19 3.4E-24 198.1 41.8 371 746-1210 164-539 (559)
39 KOG1127|consensus 99.9 3.6E-18 7.7E-23 201.8 55.8 636 560-1253 473-1187(1238)
40 PRK14574 hmsH outer membrane p 99.9 9.7E-19 2.1E-23 219.3 53.6 390 746-1215 102-521 (822)
41 KOG2003|consensus 99.9 9.6E-20 2.1E-24 197.2 37.2 467 709-1237 201-718 (840)
42 KOG1155|consensus 99.9 2.8E-19 6E-24 196.1 39.7 360 831-1243 169-538 (559)
43 KOG2003|consensus 99.9 5.6E-19 1.2E-23 191.3 36.6 458 745-1252 200-700 (840)
44 KOG1173|consensus 99.9 1.8E-18 4E-23 194.7 42.0 471 611-1107 21-527 (611)
45 PRK11788 tetratricopeptide rep 99.9 3.9E-19 8.5E-24 212.5 39.6 294 829-1129 38-344 (389)
46 KOG4162|consensus 99.9 3E-17 6.5E-22 191.1 53.2 383 824-1248 321-790 (799)
47 PRK11788 tetratricopeptide rep 99.9 6.1E-19 1.3E-23 210.9 39.4 302 747-1097 36-346 (389)
48 KOG1126|consensus 99.9 2.3E-20 5.1E-25 214.6 25.2 288 841-1134 334-623 (638)
49 KOG4162|consensus 99.9 4.2E-17 9.1E-22 189.9 51.4 433 638-1104 321-789 (799)
50 KOG1126|consensus 99.8 1.9E-19 4.1E-24 207.2 27.6 293 760-1070 333-626 (638)
51 KOG1174|consensus 99.8 4.6E-17 1E-21 175.9 38.6 447 715-1226 49-519 (564)
52 PF13429 TPR_15: Tetratricopep 99.8 5.6E-20 1.2E-24 208.6 14.2 259 864-1129 12-274 (280)
53 KOG0548|consensus 99.8 1.4E-16 3E-21 179.5 38.0 455 491-1081 12-472 (539)
54 KOG1156|consensus 99.8 1.3E-14 2.8E-19 166.2 53.5 570 621-1251 90-698 (700)
55 KOG0624|consensus 99.8 5.8E-17 1.3E-21 171.1 31.7 316 856-1218 34-381 (504)
56 KOG0548|consensus 99.8 6.4E-17 1.4E-21 182.2 33.6 416 750-1237 6-485 (539)
57 KOG1156|consensus 99.8 2.2E-15 4.7E-20 172.5 45.9 493 649-1235 20-539 (700)
58 PF13429 TPR_15: Tetratricopep 99.8 3.1E-19 6.6E-24 202.5 14.5 262 829-1098 11-277 (280)
59 KOG1174|consensus 99.8 4.6E-16 9.9E-21 168.3 37.4 309 752-1079 204-515 (564)
60 KOG0624|consensus 99.8 1.6E-15 3.5E-20 160.3 36.9 333 709-1071 38-377 (504)
61 TIGR00540 hemY_coli hemY prote 99.8 8.7E-16 1.9E-20 183.3 38.9 294 752-1098 90-399 (409)
62 TIGR00540 hemY_coli hemY prote 99.8 1.5E-15 3.3E-20 181.3 40.4 270 828-1103 86-371 (409)
63 PRK10747 putative protoheme IX 99.8 3.7E-15 8.1E-20 176.9 38.7 293 751-1064 89-390 (398)
64 PRK10747 putative protoheme IX 99.7 2.3E-14 5E-19 170.2 39.7 265 830-1103 88-362 (398)
65 PRK12370 invasion protein regu 99.7 2.1E-15 4.6E-20 186.7 31.7 249 841-1098 276-535 (553)
66 PRK12370 invasion protein regu 99.7 5.4E-15 1.2E-19 183.1 31.8 258 948-1254 275-544 (553)
67 KOG1129|consensus 99.7 7.6E-16 1.6E-20 161.8 19.7 239 939-1249 228-466 (478)
68 PRK11189 lipoprotein NlpI; Pro 99.7 7.1E-15 1.5E-19 167.1 28.8 242 947-1227 39-286 (296)
69 KOG2376|consensus 99.7 3.1E-13 6.7E-18 153.5 39.5 439 752-1251 18-497 (652)
70 KOG1129|consensus 99.7 3.8E-15 8.3E-20 156.6 20.8 240 864-1110 227-470 (478)
71 COG3063 PilF Tfp pilus assembl 99.7 3.1E-14 6.8E-19 144.7 25.4 208 861-1105 36-243 (250)
72 PRK11189 lipoprotein NlpI; Pro 99.7 3.5E-14 7.6E-19 161.4 28.4 232 840-1081 40-283 (296)
73 COG2956 Predicted N-acetylgluc 99.7 4.1E-13 8.9E-18 142.1 33.7 283 838-1129 47-344 (389)
74 KOG1125|consensus 99.7 6.9E-15 1.5E-19 167.3 21.6 229 832-1066 291-529 (579)
75 COG3063 PilF Tfp pilus assembl 99.6 4.3E-14 9.3E-19 143.7 24.9 207 826-1036 35-242 (250)
76 KOG1125|consensus 99.6 4E-15 8.7E-20 169.1 19.4 251 863-1120 288-559 (579)
77 TIGR02521 type_IV_pilW type IV 99.6 7.4E-14 1.6E-18 153.3 28.5 199 860-1064 31-232 (234)
78 KOG1914|consensus 99.6 6.5E-12 1.4E-16 141.2 42.4 406 470-921 14-499 (656)
79 KOG2376|consensus 99.6 2.1E-11 4.4E-16 139.0 45.1 450 649-1236 25-515 (652)
80 TIGR02521 type_IV_pilW type IV 99.6 1.9E-13 4.1E-18 150.1 28.6 202 893-1100 30-234 (234)
81 KOG3785|consensus 99.6 1.7E-12 3.7E-17 138.0 31.3 444 620-1106 36-497 (557)
82 COG2956 Predicted N-acetylgluc 99.6 5E-12 1.1E-16 134.0 33.6 292 756-1097 45-346 (389)
83 KOG3785|consensus 99.6 1.1E-11 2.4E-16 132.0 36.0 419 717-1210 30-493 (557)
84 PLN02789 farnesyltranstransfer 99.6 5.4E-13 1.2E-17 151.1 27.6 253 948-1257 34-318 (320)
85 PLN02789 farnesyltranstransfer 99.6 9.4E-13 2E-17 149.1 28.1 203 872-1080 49-266 (320)
86 KOG0550|consensus 99.6 7.2E-13 1.6E-17 144.6 24.9 283 748-1067 51-353 (486)
87 KOG0550|consensus 99.5 1.2E-12 2.5E-17 142.9 23.7 264 838-1101 61-353 (486)
88 KOG1914|consensus 99.5 1.4E-09 3E-14 122.8 47.3 186 910-1100 309-503 (656)
89 PF12569 NARP1: NMDA receptor- 99.5 1E-10 2.2E-15 139.9 40.3 313 746-1098 4-334 (517)
90 PF12569 NARP1: NMDA receptor- 99.5 2.1E-11 4.5E-16 145.8 34.3 314 827-1212 5-339 (517)
91 cd05804 StaR_like StaR_like; a 99.5 2.1E-11 4.6E-16 143.8 34.3 316 856-1210 2-339 (355)
92 cd05804 StaR_like StaR_like; a 99.5 6.8E-11 1.5E-15 139.5 36.7 308 776-1099 2-337 (355)
93 COG3071 HemY Uncharacterized e 99.5 4.4E-10 9.6E-15 123.5 36.3 292 751-1062 89-388 (400)
94 KOG1840|consensus 99.4 2.4E-11 5.1E-16 143.3 26.8 244 855-1098 194-479 (508)
95 COG3071 HemY Uncharacterized e 99.4 1.3E-09 2.9E-14 119.8 37.5 283 810-1101 68-360 (400)
96 KOG1258|consensus 99.4 1.4E-08 3E-13 117.8 44.5 398 562-1015 62-489 (577)
97 KOG1840|consensus 99.4 9.4E-11 2E-15 138.3 27.5 257 742-1063 195-478 (508)
98 KOG2396|consensus 99.4 8.2E-09 1.8E-13 116.1 40.5 112 499-610 89-205 (568)
99 TIGR03302 OM_YfiO outer membra 99.4 7.4E-11 1.6E-15 130.3 23.1 187 999-1243 31-234 (235)
100 COG5107 RNA14 Pre-mRNA 3'-end 99.4 1.3E-08 2.7E-13 112.4 39.2 451 630-1102 32-535 (660)
101 KOG2396|consensus 99.3 2.3E-08 5.1E-13 112.6 41.7 102 997-1098 456-559 (568)
102 TIGR03302 OM_YfiO outer membra 99.3 1.1E-10 2.4E-15 129.0 22.4 168 933-1100 32-234 (235)
103 KOG1070|consensus 99.3 3.7E-10 8E-15 139.1 27.5 246 845-1097 1443-1699(1710)
104 KOG1258|consensus 99.3 3.8E-08 8.2E-13 114.3 42.4 415 472-947 41-488 (577)
105 KOG1070|consensus 99.3 2.6E-10 5.6E-15 140.4 25.5 223 876-1099 1440-1664(1710)
106 KOG3060|consensus 99.3 1.3E-09 2.8E-14 112.6 25.9 206 947-1224 25-237 (289)
107 PRK14720 transcript cleavage f 99.3 5.7E-10 1.2E-14 138.7 27.7 255 855-1235 26-281 (906)
108 PRK04841 transcriptional regul 99.3 9.7E-09 2.1E-13 137.0 40.6 387 746-1213 341-766 (903)
109 PRK15359 type III secretion sy 99.3 1E-10 2.2E-15 117.6 16.1 123 955-1079 14-136 (144)
110 PRK15359 type III secretion sy 99.3 1E-10 2.2E-15 117.5 15.6 123 987-1112 13-135 (144)
111 PRK14720 transcript cleavage f 99.3 2.5E-09 5.4E-14 133.1 30.3 262 743-1068 28-310 (906)
112 COG5107 RNA14 Pre-mRNA 3'-end 99.2 5.1E-08 1.1E-12 107.7 36.3 458 470-999 36-534 (660)
113 KOG3060|consensus 99.2 2.2E-09 4.8E-14 110.9 24.0 199 873-1077 25-233 (289)
114 KOG4340|consensus 99.2 3.8E-09 8.2E-14 110.7 24.1 305 756-1092 20-333 (459)
115 PRK10370 formate-dependent nit 99.2 1.3E-09 2.8E-14 115.7 21.2 153 941-1103 23-178 (198)
116 KOG1128|consensus 99.2 5.4E-10 1.2E-14 130.7 19.0 223 857-1099 395-617 (777)
117 KOG1128|consensus 99.2 3.5E-10 7.5E-15 132.3 17.3 219 894-1132 398-616 (777)
118 PRK04841 transcriptional regul 99.2 2E-07 4.4E-12 124.3 43.6 345 752-1104 380-766 (903)
119 KOG3617|consensus 99.1 2E-06 4.4E-11 101.3 45.0 241 649-926 741-999 (1416)
120 PRK10370 formate-dependent nit 99.1 5.6E-09 1.2E-13 110.8 20.4 123 947-1069 52-178 (198)
121 COG5010 TadD Flp pilus assembl 99.1 6.6E-09 1.4E-13 109.0 20.0 178 984-1237 50-227 (257)
122 PRK15179 Vi polysaccharide bio 99.1 1E-08 2.2E-13 127.4 25.2 137 930-1066 82-219 (694)
123 KOG3617|consensus 99.1 2.5E-06 5.3E-11 100.6 42.2 383 491-961 738-1172(1416)
124 PRK15179 Vi polysaccharide bio 99.1 9.9E-09 2.1E-13 127.5 24.0 146 961-1106 79-225 (694)
125 TIGR02552 LcrH_SycD type III s 99.1 3.4E-09 7.3E-14 105.9 15.5 119 988-1106 4-122 (135)
126 PF04733 Coatomer_E: Coatomer 99.0 3.1E-09 6.7E-14 119.2 16.0 260 836-1107 11-274 (290)
127 COG5010 TadD Flp pilus assembl 99.0 1.4E-08 3E-13 106.5 19.4 174 953-1127 52-226 (257)
128 KOG4340|consensus 99.0 8.2E-07 1.8E-11 93.5 30.2 303 615-958 19-334 (459)
129 TIGR02552 LcrH_SycD type III s 99.0 1.1E-08 2.3E-13 102.3 15.6 117 955-1071 4-121 (135)
130 COG4783 Putative Zn-dependent 99.0 7.7E-08 1.7E-12 109.0 23.3 161 998-1216 303-463 (484)
131 PF04733 Coatomer_E: Coatomer 98.9 1.2E-08 2.6E-13 114.5 14.6 74 1178-1251 201-275 (290)
132 KOG3616|consensus 98.9 0.00028 6.1E-09 82.5 49.2 49 491-540 454-502 (1636)
133 KOG0553|consensus 98.9 1.7E-08 3.8E-13 107.7 13.8 115 972-1086 86-200 (304)
134 COG4783 Putative Zn-dependent 98.9 1.6E-07 3.4E-12 106.5 21.8 151 826-998 306-456 (484)
135 KOG1130|consensus 98.9 5.2E-08 1.1E-12 106.4 16.7 294 868-1230 25-373 (639)
136 KOG2300|consensus 98.8 0.0004 8.7E-09 78.5 46.1 441 715-1235 13-550 (629)
137 PRK15363 pathogenicity island 98.8 9.5E-08 2.1E-12 94.1 14.2 102 998-1099 32-133 (157)
138 KOG2053|consensus 98.8 0.00072 1.6E-08 82.3 48.6 417 648-1129 21-499 (932)
139 KOG1130|consensus 98.8 1.7E-07 3.6E-12 102.5 16.5 295 718-1052 26-372 (639)
140 COG3898 Uncharacterized membra 98.7 3.8E-05 8.3E-10 84.3 33.4 296 682-996 96-392 (531)
141 KOG0553|consensus 98.7 6.5E-08 1.4E-12 103.4 12.2 110 1003-1112 83-192 (304)
142 PLN03088 SGT1, suppressor of 98.7 1.6E-07 3.5E-12 109.4 16.7 113 970-1082 5-117 (356)
143 PRK15363 pathogenicity island 98.7 2.3E-07 5E-12 91.5 15.0 98 968-1065 36-133 (157)
144 PRK10866 outer membrane biogen 98.7 1.9E-06 4.2E-11 94.4 23.4 180 1001-1238 32-238 (243)
145 KOG2053|consensus 98.7 0.0017 3.7E-08 79.1 49.1 475 593-1092 26-564 (932)
146 PF13525 YfiO: Outer membrane 98.7 1.1E-06 2.4E-11 94.0 20.7 53 1180-1232 143-198 (203)
147 COG3898 Uncharacterized membra 98.7 6.9E-05 1.5E-09 82.4 32.8 289 754-1064 92-392 (531)
148 KOG0128|consensus 98.7 0.00013 2.9E-09 87.6 37.3 400 760-1240 93-525 (881)
149 PLN03088 SGT1, suppressor of 98.6 4.3E-07 9.4E-12 105.8 16.0 109 1004-1112 5-113 (356)
150 KOG0128|consensus 98.6 9.3E-05 2E-09 89.0 34.8 407 495-957 93-557 (881)
151 TIGR02795 tol_pal_ybgF tol-pal 98.6 1.1E-06 2.5E-11 85.1 15.3 102 1003-1104 4-111 (119)
152 COG4235 Cytochrome c biogenesi 98.6 1.1E-06 2.5E-11 94.9 16.1 122 982-1103 137-261 (287)
153 KOG2471|consensus 98.6 9.8E-05 2.1E-09 83.2 31.4 357 862-1241 208-684 (696)
154 TIGR02795 tol_pal_ybgF tol-pal 98.6 1E-06 2.2E-11 85.5 14.5 104 968-1071 3-112 (119)
155 PRK10866 outer membrane biogen 98.6 7.7E-06 1.7E-10 89.7 22.9 184 708-920 31-238 (243)
156 PF13525 YfiO: Outer membrane 98.6 3.9E-06 8.4E-11 89.9 20.0 175 711-914 7-198 (203)
157 PF05843 Suf: Suppressor of fo 98.6 1E-06 2.2E-11 99.2 15.9 140 968-1107 2-145 (280)
158 KOG3616|consensus 98.6 0.0046 1E-07 72.8 49.3 364 618-1027 744-1181(1636)
159 PF14938 SNAP: Soluble NSF att 98.6 1.6E-06 3.5E-11 98.1 17.3 124 875-998 89-227 (282)
160 cd00189 TPR Tetratricopeptide 98.5 8.8E-07 1.9E-11 81.1 11.8 97 970-1066 3-99 (100)
161 PF13414 TPR_11: TPR repeat; P 98.5 3.2E-07 7E-12 79.4 8.0 67 1177-1243 2-69 (69)
162 cd00189 TPR Tetratricopeptide 98.5 1E-06 2.2E-11 80.7 11.9 99 1003-1101 2-100 (100)
163 PRK02603 photosystem I assembl 98.5 7.5E-06 1.6E-10 85.4 18.9 91 932-1022 33-127 (172)
164 PF14938 SNAP: Soluble NSF att 98.5 5.9E-06 1.3E-10 93.5 19.3 171 862-1066 37-227 (282)
165 KOG3081|consensus 98.5 7.2E-05 1.6E-09 78.8 25.1 256 837-1106 19-279 (299)
166 PF09976 TPR_21: Tetratricopep 98.5 5.3E-06 1.2E-10 83.7 16.8 115 980-1095 24-144 (145)
167 COG0457 NrfG FOG: TPR repeat [ 98.5 0.00019 4E-09 77.7 30.6 221 841-1067 38-268 (291)
168 COG0457 NrfG FOG: TPR repeat [ 98.5 0.00027 5.9E-09 76.5 31.9 225 873-1101 36-268 (291)
169 KOG2300|consensus 98.5 0.0054 1.2E-07 69.8 40.9 437 747-1246 8-519 (629)
170 COG4235 Cytochrome c biogenesi 98.5 3.6E-06 7.9E-11 91.1 15.8 120 842-967 138-260 (287)
171 PRK11906 transcriptional regul 98.4 5.7E-06 1.2E-10 94.9 17.7 147 982-1129 273-433 (458)
172 PF13414 TPR_11: TPR repeat; P 98.4 8.1E-07 1.7E-11 76.9 8.3 66 1001-1066 3-69 (69)
173 PF13432 TPR_16: Tetratricopep 98.4 5.7E-07 1.2E-11 76.8 7.3 65 1182-1246 1-65 (65)
174 PF09976 TPR_21: Tetratricopep 98.4 9.2E-06 2E-10 82.0 16.9 117 838-961 23-145 (145)
175 COG4785 NlpI Lipoprotein NlpI, 98.4 1.5E-05 3.2E-10 80.8 17.7 202 968-1208 66-267 (297)
176 PRK02603 photosystem I assembl 98.4 8E-06 1.7E-10 85.1 16.8 116 967-1102 35-153 (172)
177 PF05843 Suf: Suppressor of fo 98.4 4.9E-06 1.1E-10 93.7 15.8 134 862-1001 3-141 (280)
178 KOG3081|consensus 98.4 0.00022 4.8E-09 75.2 26.0 127 942-1071 145-278 (299)
179 KOG1941|consensus 98.4 0.00018 3.9E-09 78.4 25.5 52 749-800 9-63 (518)
180 CHL00033 ycf3 photosystem I as 98.4 8.7E-06 1.9E-10 84.5 15.3 97 950-1046 15-117 (168)
181 PRK10153 DNA-binding transcrip 98.4 9.9E-06 2.1E-10 98.3 17.9 122 982-1104 357-488 (517)
182 PF13432 TPR_16: Tetratricopep 98.3 2.1E-06 4.5E-11 73.3 8.5 62 973-1034 3-64 (65)
183 COG4105 ComL DNA uptake lipopr 98.3 7.6E-05 1.6E-09 79.3 21.6 197 1001-1257 34-247 (254)
184 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.2E-05 2.6E-10 93.2 17.2 110 980-1092 182-291 (395)
185 PRK10803 tol-pal system protei 98.3 1.6E-05 3.4E-10 87.9 17.0 104 968-1071 143-253 (263)
186 COG4785 NlpI Lipoprotein NlpI, 98.3 6.1E-05 1.3E-09 76.4 19.0 191 861-1065 66-267 (297)
187 KOG0543|consensus 98.3 9.6E-06 2.1E-10 90.8 14.7 99 1002-1100 258-357 (397)
188 KOG0543|consensus 98.3 9.4E-06 2E-10 90.8 14.6 99 968-1066 258-357 (397)
189 KOG1941|consensus 98.3 0.00019 4.2E-09 78.1 23.8 230 869-1098 15-275 (518)
190 CHL00033 ycf3 photosystem I as 98.3 1.1E-05 2.4E-10 83.8 14.1 121 982-1102 14-153 (168)
191 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.9E-05 4.1E-10 91.5 17.2 120 939-1060 174-293 (395)
192 PRK11906 transcriptional regul 98.3 3E-05 6.5E-10 89.1 18.4 113 982-1095 319-433 (458)
193 PF12895 Apc3: Anaphase-promot 98.3 2.3E-06 5.1E-11 77.3 7.7 79 981-1060 3-83 (84)
194 PRK10803 tol-pal system protei 98.2 1.9E-05 4.1E-10 87.2 15.6 106 1001-1106 142-254 (263)
195 PRK10153 DNA-binding transcrip 98.2 3.9E-05 8.4E-10 93.2 19.3 151 852-1035 329-487 (517)
196 PRK15331 chaperone protein Sic 98.2 4.8E-05 1E-09 75.6 15.7 103 968-1071 38-140 (165)
197 PF12895 Apc3: Anaphase-promot 98.2 4.1E-06 9E-11 75.7 7.8 80 947-1027 2-84 (84)
198 COG4105 ComL DNA uptake lipopr 98.2 0.00066 1.4E-08 72.3 24.0 170 934-1103 34-238 (254)
199 PRK15331 chaperone protein Sic 98.1 2.6E-05 5.7E-10 77.4 12.3 110 996-1106 32-141 (165)
200 PF10345 Cohesin_load: Cohesin 98.1 0.076 1.6E-06 67.1 51.2 190 726-925 38-256 (608)
201 COG4700 Uncharacterized protei 98.1 0.00054 1.2E-08 68.2 20.2 134 883-1023 79-215 (251)
202 COG4700 Uncharacterized protei 98.1 0.00052 1.1E-08 68.3 20.0 148 949-1097 71-221 (251)
203 PF14559 TPR_19: Tetratricopep 98.1 8.3E-06 1.8E-10 70.3 6.7 60 1014-1073 4-63 (68)
204 PF12688 TPR_5: Tetratrico pep 98.1 7.8E-05 1.7E-09 71.5 13.6 93 936-1028 3-102 (120)
205 PF14559 TPR_19: Tetratricopep 98.1 1.2E-05 2.7E-10 69.2 7.5 65 979-1043 3-67 (68)
206 PF12688 TPR_5: Tetratrico pep 98.0 9.5E-05 2.1E-09 70.9 13.6 96 968-1063 2-103 (120)
207 COG1729 Uncharacterized protei 98.0 9.9E-05 2.2E-09 79.2 14.9 102 970-1071 144-251 (262)
208 KOG0985|consensus 98.0 0.12 2.6E-06 63.9 53.7 256 840-1136 1089-1348(1666)
209 PF13371 TPR_9: Tetratricopept 97.9 4.3E-05 9.2E-10 66.9 8.7 63 976-1038 4-66 (73)
210 PF08424 NRDE-2: NRDE-2, neces 97.9 0.00022 4.8E-09 82.0 16.6 105 595-699 50-183 (321)
211 PF13371 TPR_9: Tetratricopept 97.9 5.5E-05 1.2E-09 66.1 8.7 63 1009-1071 3-65 (73)
212 KOG2471|consensus 97.9 0.0031 6.8E-08 71.5 24.1 131 1003-1134 511-686 (696)
213 KOG4648|consensus 97.9 1.3E-05 2.8E-10 86.2 5.3 238 749-1071 100-337 (536)
214 KOG4234|consensus 97.9 0.00016 3.6E-09 72.5 12.4 100 978-1077 106-210 (271)
215 KOG0985|consensus 97.9 0.17 3.7E-06 62.7 58.1 167 1047-1253 1087-1256(1666)
216 COG1729 Uncharacterized protei 97.9 0.00029 6.4E-09 75.7 14.8 105 937-1041 144-255 (262)
217 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 9.1E-05 2E-09 85.1 11.4 70 1172-1241 69-141 (453)
218 KOG4648|consensus 97.8 2.2E-05 4.8E-10 84.4 5.9 242 971-1253 101-342 (536)
219 KOG4234|consensus 97.8 0.00022 4.8E-09 71.6 12.3 102 1011-1112 105-211 (271)
220 PF13512 TPR_18: Tetratricopep 97.8 0.0006 1.3E-08 66.4 14.4 82 934-1015 10-98 (142)
221 PF08424 NRDE-2: NRDE-2, neces 97.8 0.002 4.3E-08 74.2 20.8 176 767-997 6-184 (321)
222 PF13512 TPR_18: Tetratricopep 97.7 0.00074 1.6E-08 65.8 14.2 120 967-1105 10-135 (142)
223 KOG1586|consensus 97.7 0.0029 6.4E-08 65.5 18.9 121 982-1102 88-228 (288)
224 KOG1585|consensus 97.7 0.016 3.4E-07 60.7 23.9 130 834-963 79-219 (308)
225 KOG1586|consensus 97.7 0.014 3E-07 60.7 22.8 187 947-1215 27-232 (288)
226 KOG2796|consensus 97.6 0.02 4.3E-07 60.5 23.0 136 968-1103 178-320 (366)
227 KOG2796|consensus 97.6 0.05 1.1E-06 57.6 25.6 140 862-1034 179-319 (366)
228 KOG1585|consensus 97.6 0.014 3.1E-07 61.0 21.0 201 862-1097 33-255 (308)
229 PF06552 TOM20_plant: Plant sp 97.5 0.00074 1.6E-08 67.8 11.3 100 762-900 7-120 (186)
230 PF04184 ST7: ST7 protein; In 97.5 0.0046 1E-07 71.3 19.0 190 865-1073 173-384 (539)
231 PF13428 TPR_14: Tetratricopep 97.5 0.00016 3.5E-09 56.0 5.0 43 1178-1220 1-43 (44)
232 KOG0530|consensus 97.5 0.031 6.7E-07 59.2 22.5 235 982-1252 58-309 (318)
233 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00082 1.8E-08 77.5 12.0 64 967-1030 75-141 (453)
234 PF02259 FAT: FAT domain; Int 97.5 0.053 1.2E-06 63.7 28.2 167 930-1101 142-341 (352)
235 KOG4507|consensus 97.5 0.011 2.4E-07 68.5 20.5 110 748-869 214-326 (886)
236 PF07079 DUF1347: Protein of u 97.4 0.38 8.3E-06 55.1 42.7 187 942-1131 306-523 (549)
237 PF13428 TPR_14: Tetratricopep 97.4 0.00047 1E-08 53.4 6.0 43 515-557 1-43 (44)
238 PF04184 ST7: ST7 protein; In 97.3 0.017 3.8E-07 66.7 20.3 60 748-807 261-322 (539)
239 PF13281 DUF4071: Domain of un 97.3 0.029 6.2E-07 64.4 22.1 117 967-1084 141-274 (374)
240 KOG4555|consensus 97.3 0.0068 1.5E-07 56.9 13.7 97 973-1069 49-149 (175)
241 PF06552 TOM20_plant: Plant sp 97.3 0.0017 3.7E-08 65.2 10.4 88 983-1070 7-115 (186)
242 KOG0890|consensus 97.3 1.8 3.9E-05 59.5 40.9 322 675-1031 1388-1732(2382)
243 KOG4555|consensus 97.3 0.0055 1.2E-07 57.5 12.6 95 1005-1099 47-145 (175)
244 PF13424 TPR_12: Tetratricopep 97.3 0.00036 7.8E-09 61.9 4.8 64 1178-1241 5-75 (78)
245 PF10300 DUF3808: Protein of u 97.3 0.21 4.5E-06 60.6 30.0 152 945-1096 199-374 (468)
246 PF08631 SPO22: Meiosis protei 97.3 0.12 2.5E-06 58.4 26.1 121 946-1066 5-152 (278)
247 PF10345 Cohesin_load: Cohesin 97.2 1.3 2.8E-05 56.1 45.4 50 759-808 152-207 (608)
248 KOG0530|consensus 97.1 0.074 1.6E-06 56.5 20.6 163 845-1013 62-233 (318)
249 PF10300 DUF3808: Protein of u 97.1 0.25 5.4E-06 60.0 28.4 182 1022-1243 178-378 (468)
250 KOG4507|consensus 97.1 0.15 3.3E-06 59.6 24.1 116 845-966 198-315 (886)
251 PF02259 FAT: FAT domain; Int 97.1 0.27 5.8E-06 57.7 28.0 279 493-793 10-305 (352)
252 PF13424 TPR_12: Tetratricopep 97.0 0.00095 2.1E-08 59.2 5.3 62 1002-1063 6-74 (78)
253 KOG2041|consensus 97.0 1.2 2.6E-05 53.4 31.4 250 652-960 679-936 (1189)
254 KOG2610|consensus 97.0 0.055 1.2E-06 59.1 18.7 114 947-1060 116-234 (491)
255 COG5191 Uncharacterized conser 97.0 0.00069 1.5E-08 72.5 4.0 90 503-592 95-189 (435)
256 KOG2610|consensus 96.9 0.069 1.5E-06 58.4 18.9 159 898-1062 107-274 (491)
257 COG2909 MalT ATP-dependent tra 96.9 0.81 1.8E-05 57.0 30.2 236 967-1237 415-684 (894)
258 PF07719 TPR_2: Tetratricopept 96.9 0.0017 3.6E-08 47.0 4.8 34 1178-1211 1-34 (34)
259 PF07079 DUF1347: Protein of u 96.9 1.3 2.7E-05 51.1 42.0 33 863-895 382-415 (549)
260 KOG1464|consensus 96.9 0.27 5.8E-06 52.3 21.9 195 874-1101 41-263 (440)
261 COG3118 Thioredoxin domain-con 96.8 0.067 1.5E-06 58.3 18.0 149 748-908 136-286 (304)
262 KOG2041|consensus 96.8 1.8 4E-05 51.9 31.1 164 615-805 714-877 (1189)
263 PF13431 TPR_17: Tetratricopep 96.8 0.001 2.3E-08 48.0 2.9 33 1200-1232 1-33 (34)
264 PF00515 TPR_1: Tetratricopept 96.7 0.0023 4.9E-08 46.3 4.2 33 1179-1211 2-34 (34)
265 KOG4642|consensus 96.7 0.0079 1.7E-07 62.7 9.3 87 977-1063 20-106 (284)
266 COG2909 MalT ATP-dependent tra 96.7 2.5 5.5E-05 52.9 31.9 236 826-1061 415-685 (894)
267 PF13281 DUF4071: Domain of un 96.7 0.17 3.8E-06 58.1 20.9 126 826-982 141-274 (374)
268 COG3118 Thioredoxin domain-con 96.7 0.091 2E-06 57.3 17.3 142 833-981 141-286 (304)
269 PF13431 TPR_17: Tetratricopep 96.5 0.0028 6.1E-08 45.8 3.2 34 503-536 1-34 (34)
270 KOG4642|consensus 96.3 0.036 7.9E-07 57.9 11.4 85 840-924 24-108 (284)
271 PF03704 BTAD: Bacterial trans 96.3 0.092 2E-06 52.9 14.3 111 676-807 12-123 (146)
272 KOG1550|consensus 96.3 1.4 3E-05 54.9 27.1 274 910-1243 228-540 (552)
273 KOG0890|consensus 96.2 9.7 0.00021 52.9 44.9 123 520-646 1388-1523(2382)
274 PF08631 SPO22: Meiosis protei 96.2 3.1 6.7E-05 47.0 28.0 102 747-891 36-152 (278)
275 COG5191 Uncharacterized conser 96.1 0.0095 2.1E-07 64.1 6.0 91 989-1079 95-186 (435)
276 KOG0545|consensus 96.1 0.1 2.2E-06 54.8 12.9 71 1001-1071 230-300 (329)
277 KOG0376|consensus 96.0 0.01 2.2E-07 68.4 6.2 93 979-1071 16-108 (476)
278 KOG0545|consensus 96.0 0.1 2.2E-06 54.8 12.7 71 967-1037 230-300 (329)
279 PF03704 BTAD: Bacterial trans 96.0 0.14 3.1E-06 51.5 14.1 62 1002-1063 63-124 (146)
280 PF04910 Tcf25: Transcriptiona 96.0 0.35 7.7E-06 56.3 18.7 35 887-921 33-67 (360)
281 PF07719 TPR_2: Tetratricopept 95.9 0.019 4.1E-07 41.3 5.2 29 1004-1032 4-32 (34)
282 PF04910 Tcf25: Transcriptiona 95.9 0.21 4.5E-06 58.2 16.4 174 993-1210 32-225 (360)
283 COG2976 Uncharacterized protei 95.8 0.6 1.3E-05 48.0 16.8 115 952-1067 70-191 (207)
284 KOG1464|consensus 95.8 1.2 2.6E-05 47.5 19.5 198 760-997 41-261 (440)
285 PRK15180 Vi polysaccharide bio 95.8 5.3 0.00011 46.2 28.1 129 650-786 303-431 (831)
286 PF00515 TPR_1: Tetratricopept 95.7 0.021 4.5E-07 41.2 4.5 29 1004-1032 4-32 (34)
287 PF13181 TPR_8: Tetratricopept 95.6 0.017 3.7E-07 41.6 4.0 32 1180-1211 3-34 (34)
288 COG2976 Uncharacterized protei 95.5 0.98 2.1E-05 46.5 16.9 94 939-1033 94-191 (207)
289 KOG0376|consensus 95.5 0.022 4.8E-07 65.7 6.0 103 1007-1109 10-112 (476)
290 COG5159 RPN6 26S proteasome re 95.3 5.6 0.00012 43.1 25.3 168 899-1066 130-316 (421)
291 KOG1308|consensus 95.1 0.019 4E-07 63.3 3.8 118 978-1096 125-242 (377)
292 KOG1463|consensus 95.0 5 0.00011 44.7 21.7 168 899-1066 133-318 (411)
293 PF13174 TPR_6: Tetratricopept 94.9 0.043 9.3E-07 39.1 4.1 32 1180-1211 2-33 (33)
294 KOG2422|consensus 94.7 1.7 3.8E-05 51.4 18.3 167 871-1066 249-450 (665)
295 KOG3824|consensus 94.6 0.13 2.9E-06 55.5 8.4 66 492-557 127-192 (472)
296 COG0790 FOG: TPR repeat, SEL1 94.5 11 0.00024 42.8 25.8 60 985-1049 173-236 (292)
297 KOG0551|consensus 94.5 1.2 2.6E-05 49.3 15.3 93 939-1031 86-183 (390)
298 KOG1538|consensus 94.4 5.5 0.00012 47.7 21.5 24 186-209 93-117 (1081)
299 COG0790 FOG: TPR repeat, SEL1 94.4 4.6 0.0001 45.9 21.5 188 978-1242 52-267 (292)
300 KOG1550|consensus 94.3 20 0.00042 44.9 30.7 80 1016-1100 454-540 (552)
301 KOG0551|consensus 94.2 0.25 5.4E-06 54.4 9.6 100 968-1067 82-185 (390)
302 KOG1538|consensus 93.8 7.6 0.00017 46.6 20.9 87 856-960 743-830 (1081)
303 PF13181 TPR_8: Tetratricopept 93.7 0.12 2.6E-06 37.1 4.3 29 1004-1032 4-32 (34)
304 KOG3824|consensus 93.6 0.19 4.2E-06 54.3 7.3 69 975-1043 124-192 (472)
305 PF13174 TPR_6: Tetratricopept 93.6 0.12 2.6E-06 36.7 4.2 33 516-548 1-33 (33)
306 COG5159 RPN6 26S proteasome re 93.6 13 0.00028 40.5 23.5 170 863-1033 128-317 (421)
307 PF13176 TPR_7: Tetratricopept 93.5 0.065 1.4E-06 39.3 2.6 28 1180-1207 1-28 (36)
308 KOG3807|consensus 93.3 9.8 0.00021 42.0 19.4 52 868-921 192-243 (556)
309 PF14853 Fis1_TPR_C: Fis1 C-te 93.1 0.37 8.1E-06 38.7 6.5 42 1180-1221 3-44 (53)
310 KOG2422|consensus 93.0 5.5 0.00012 47.5 18.3 134 967-1101 284-451 (665)
311 PRK10941 hypothetical protein; 92.9 0.89 1.9E-05 50.5 11.4 73 970-1042 184-256 (269)
312 smart00386 HAT HAT (Half-A-TPR 92.7 0.17 3.6E-06 35.8 3.8 26 531-556 3-28 (33)
313 PRK11619 lytic murein transgly 92.6 37 0.00081 43.0 45.2 123 732-886 85-207 (644)
314 PF04781 DUF627: Protein of un 92.6 1.2 2.6E-05 41.6 9.9 105 752-889 2-107 (111)
315 smart00028 TPR Tetratricopepti 92.5 0.19 4.1E-06 34.7 3.9 32 1180-1211 3-34 (34)
316 KOG1308|consensus 92.3 0.14 3E-06 56.7 4.2 85 837-921 125-209 (377)
317 PRK10941 hypothetical protein; 92.3 0.78 1.7E-05 50.9 10.2 65 1041-1105 187-251 (269)
318 PF08311 Mad3_BUB1_I: Mad3/BUB 92.2 2.1 4.6E-05 41.7 11.9 56 640-697 69-126 (126)
319 PF14561 TPR_20: Tetratricopep 92.0 1.1 2.4E-05 40.7 9.0 70 1168-1237 12-83 (90)
320 smart00386 HAT HAT (Half-A-TPR 91.9 0.29 6.3E-06 34.5 4.3 31 495-525 1-31 (33)
321 KOG1463|consensus 91.9 25 0.00054 39.5 24.1 169 863-1032 131-318 (411)
322 PF09613 HrpB1_HrpK: Bacterial 91.9 5.9 0.00013 39.9 14.6 75 976-1050 19-93 (160)
323 COG4649 Uncharacterized protei 91.8 11 0.00023 38.2 15.9 92 972-1063 99-195 (221)
324 COG4649 Uncharacterized protei 90.7 16 0.00034 37.0 15.8 142 753-903 65-209 (221)
325 PRK13184 pknD serine/threonine 90.4 72 0.0016 42.0 31.6 53 762-815 535-587 (932)
326 PF14561 TPR_20: Tetratricopep 90.4 2 4.3E-05 39.1 9.0 46 988-1033 9-54 (90)
327 KOG3783|consensus 90.3 48 0.001 39.8 25.3 77 843-921 250-330 (546)
328 COG1747 Uncharacterized N-term 90.3 46 0.00099 39.5 25.9 180 928-1111 60-247 (711)
329 PF13176 TPR_7: Tetratricopept 90.0 0.54 1.2E-05 34.4 4.1 26 749-774 2-27 (36)
330 PF08311 Mad3_BUB1_I: Mad3/BUB 89.9 13 0.00028 36.2 14.9 112 655-773 4-126 (126)
331 PF09613 HrpB1_HrpK: Bacterial 89.8 4.7 0.0001 40.6 11.8 98 1002-1100 11-108 (160)
332 PF10602 RPN7: 26S proteasome 89.7 3.3 7.2E-05 43.0 11.3 93 935-1027 37-139 (177)
333 COG3629 DnrI DNA-binding trans 89.6 12 0.00026 41.6 15.8 64 746-809 153-216 (280)
334 PF10602 RPN7: 26S proteasome 89.4 2.8 6.1E-05 43.6 10.4 62 861-922 37-101 (177)
335 PF04781 DUF627: Protein of un 89.2 2.5 5.5E-05 39.5 8.7 44 1020-1063 63-106 (111)
336 PRK15180 Vi polysaccharide bio 89.1 52 0.0011 38.5 29.1 53 492-544 300-352 (831)
337 COG3914 Spy Predicted O-linked 88.8 11 0.00024 45.3 15.6 105 974-1078 74-185 (620)
338 PF09986 DUF2225: Uncharacteri 88.4 3.6 7.8E-05 44.2 10.7 24 967-990 118-141 (214)
339 PF04053 Coatomer_WDAD: Coatom 88.2 6.8 0.00015 47.1 14.0 28 1000-1027 346-373 (443)
340 PF04053 Coatomer_WDAD: Coatom 88.1 11 0.00025 45.2 15.8 159 946-1134 273-433 (443)
341 PRK11619 lytic murein transgly 87.5 93 0.002 39.5 37.7 210 866-1095 247-465 (644)
342 COG4976 Predicted methyltransf 87.4 0.75 1.6E-05 48.2 4.5 55 1013-1067 7-61 (287)
343 COG3914 Spy Predicted O-linked 87.2 36 0.00078 41.2 18.5 93 1019-1111 49-144 (620)
344 PF13374 TPR_10: Tetratricopep 87.2 1 2.2E-05 33.8 4.2 28 1180-1207 4-31 (42)
345 KOG0889|consensus 87.1 76 0.0016 46.6 24.0 44 1070-1113 2813-2856(3550)
346 KOG1920|consensus 87.0 1.1E+02 0.0023 40.4 23.4 109 1012-1134 919-1030(1265)
347 smart00028 TPR Tetratricopepti 86.6 0.96 2.1E-05 30.9 3.6 23 1007-1029 7-29 (34)
348 COG1747 Uncharacterized N-term 86.3 80 0.0017 37.6 26.7 184 845-1033 85-291 (711)
349 PF14853 Fis1_TPR_C: Fis1 C-te 86.2 3.8 8.3E-05 33.0 7.0 42 862-903 3-44 (53)
350 KOG0529|consensus 85.7 19 0.0004 41.7 14.7 134 982-1115 90-241 (421)
351 COG4976 Predicted methyltransf 85.4 1.2 2.6E-05 46.7 4.8 59 1187-1245 4-62 (287)
352 PF09986 DUF2225: Uncharacteri 85.4 7.3 0.00016 41.8 11.0 29 968-996 166-194 (214)
353 TIGR02561 HrpB1_HrpK type III 85.3 23 0.0005 35.2 13.2 72 979-1050 22-93 (153)
354 PF02184 HAT: HAT (Half-A-TPR) 84.3 1.6 3.6E-05 30.7 3.5 26 623-649 4-29 (32)
355 PRK13184 pknD serine/threonine 84.2 1.5E+02 0.0034 39.1 33.9 112 973-1096 810-923 (932)
356 COG4941 Predicted RNA polymera 84.1 44 0.00095 37.6 16.0 30 843-872 213-242 (415)
357 KOG4422|consensus 84.1 91 0.002 36.3 41.1 130 605-735 205-339 (625)
358 KOG2581|consensus 83.5 73 0.0016 36.8 17.7 105 895-1000 170-280 (493)
359 KOG4814|consensus 83.1 66 0.0014 39.2 17.9 87 977-1063 364-456 (872)
360 TIGR02561 HrpB1_HrpK type III 83.1 36 0.00077 33.9 13.4 72 838-909 22-93 (153)
361 KOG3783|consensus 83.0 1.2E+02 0.0025 36.7 27.9 66 1180-1245 451-524 (546)
362 PF15015 NYD-SP12_N: Spermatog 82.9 14 0.00031 42.3 12.1 80 968-1047 229-311 (569)
363 KOG0292|consensus 82.7 93 0.002 39.5 19.4 102 1006-1107 996-1122(1202)
364 KOG1920|consensus 82.7 1.8E+02 0.0038 38.6 26.3 25 746-770 939-963 (1265)
365 PF11207 DUF2989: Protein of u 82.3 60 0.0013 34.2 15.5 55 1176-1231 139-197 (203)
366 KOG2066|consensus 81.6 1.6E+02 0.0034 37.2 24.4 44 1214-1257 649-701 (846)
367 KOG3807|consensus 81.5 96 0.0021 34.7 20.8 132 840-990 198-334 (556)
368 KOG2581|consensus 81.4 52 0.0011 38.0 15.6 130 904-1033 136-279 (493)
369 PF02184 HAT: HAT (Half-A-TPR) 81.2 2.2 4.8E-05 30.1 3.2 30 651-681 2-31 (32)
370 PF04840 Vps16_C: Vps16, C-ter 80.8 1.1E+02 0.0024 35.1 27.1 96 979-1091 189-284 (319)
371 PF07720 TPR_3: Tetratricopept 80.7 4.1 8.8E-05 29.9 4.7 33 1179-1211 2-36 (36)
372 KOG0529|consensus 79.9 47 0.001 38.5 15.0 59 1195-1253 353-414 (421)
373 PF11207 DUF2989: Protein of u 79.6 26 0.00055 36.8 11.8 55 999-1054 139-197 (203)
374 KOG1310|consensus 79.1 5.9 0.00013 46.5 7.7 90 980-1069 387-479 (758)
375 PF04097 Nic96: Nup93/Nic96; 78.5 1E+02 0.0022 39.1 19.3 24 748-771 260-283 (613)
376 smart00299 CLH Clathrin heavy 78.2 43 0.00093 33.1 13.1 46 838-884 19-64 (140)
377 COG3629 DnrI DNA-binding trans 77.1 39 0.00084 37.7 13.1 62 1036-1097 154-215 (280)
378 PF12862 Apc5: Anaphase-promot 76.3 5.6 0.00012 36.5 5.5 34 1180-1213 43-76 (94)
379 KOG3364|consensus 76.2 38 0.00083 33.0 10.8 73 965-1037 30-107 (149)
380 COG4941 Predicted RNA polymera 75.7 88 0.0019 35.3 15.0 181 876-1071 212-401 (415)
381 PF12968 DUF3856: Domain of Un 75.6 76 0.0016 30.2 13.5 83 946-1028 21-127 (144)
382 KOG3364|consensus 75.3 49 0.0011 32.3 11.3 74 709-783 32-108 (149)
383 KOG4014|consensus 75.0 1.1E+02 0.0023 31.6 15.7 109 934-1046 34-155 (248)
384 PF12968 DUF3856: Domain of Un 74.9 79 0.0017 30.1 13.3 96 754-888 17-128 (144)
385 KOG1310|consensus 74.5 8.2 0.00018 45.4 7.2 89 947-1035 387-479 (758)
386 PTZ00046 rifin; Provisional 74.0 5.5 0.00012 45.3 5.6 49 149-198 65-116 (358)
387 COG2912 Uncharacterized conser 73.5 18 0.0004 39.7 9.2 64 976-1039 190-253 (269)
388 COG2912 Uncharacterized conser 73.4 12 0.00027 41.0 7.9 60 1045-1104 191-250 (269)
389 PF13041 PPR_2: PPR repeat fam 72.8 14 0.00031 29.0 6.4 45 669-717 2-46 (50)
390 PF13041 PPR_2: PPR repeat fam 72.5 14 0.00031 29.0 6.3 43 933-975 2-46 (50)
391 PF07721 TPR_4: Tetratricopept 72.3 4.5 9.8E-05 27.0 2.8 23 1180-1202 3-25 (26)
392 PF09797 NatB_MDM20: N-acetylt 72.3 2E+02 0.0044 33.7 23.5 44 1017-1060 199-242 (365)
393 PF04190 DUF410: Protein of un 72.3 1.7E+02 0.0036 32.6 19.8 80 858-963 88-170 (260)
394 PF10516 SHNi-TPR: SHNi-TPR; 71.1 6.7 0.00015 29.1 3.7 28 1180-1207 3-30 (38)
395 smart00299 CLH Clathrin heavy 71.1 1.1E+02 0.0024 30.1 14.5 116 979-1113 19-135 (140)
396 PRK12798 chemotaxis protein; R 70.1 2.3E+02 0.005 33.4 22.6 192 898-1095 116-321 (421)
397 TIGR01477 RIFIN variant surfac 69.4 7.1 0.00015 44.3 5.1 49 149-198 68-119 (353)
398 KOG1839|consensus 69.4 25 0.00054 46.5 10.6 119 845-963 957-1086(1236)
399 KOG4279|consensus 69.0 83 0.0018 39.0 13.8 115 967-1083 201-334 (1226)
400 PF13374 TPR_10: Tetratricopep 68.1 12 0.00025 27.8 4.8 26 1004-1029 5-30 (42)
401 PF10579 Rapsyn_N: Rapsyn N-te 67.9 20 0.00042 31.4 6.3 56 1182-1237 10-68 (80)
402 KOG0889|consensus 67.5 6.8E+02 0.015 37.8 31.1 139 967-1107 2812-2963(3550)
403 PF04097 Nic96: Nup93/Nic96; 66.6 3.2E+02 0.0069 34.7 19.7 33 1180-1213 505-539 (613)
404 KOG1839|consensus 66.5 45 0.00097 44.3 12.0 135 928-1062 967-1126(1236)
405 PF07720 TPR_3: Tetratricopept 64.0 20 0.00043 26.3 4.9 34 515-548 1-36 (36)
406 PF12862 Apc5: Anaphase-promot 64.0 34 0.00073 31.3 7.8 24 898-921 45-68 (94)
407 PF15015 NYD-SP12_N: Spermatog 63.1 42 0.00091 38.8 9.5 88 974-1061 183-288 (569)
408 PF10581 Synapsin_N: Synapsin 62.7 3.2 6.9E-05 28.1 0.5 15 31-45 17-31 (32)
409 KOG2063|consensus 62.2 3.9E+02 0.0085 35.0 18.9 29 934-962 684-712 (877)
410 PF12854 PPR_1: PPR repeat 62.0 16 0.00034 26.3 4.1 28 932-959 5-32 (34)
411 COG4455 ImpE Protein of avirul 61.6 40 0.00086 35.7 8.3 63 753-815 8-70 (273)
412 COG3947 Response regulator con 61.5 28 0.00061 38.3 7.5 59 748-806 281-339 (361)
413 KOG0276|consensus 61.4 1E+02 0.0022 37.5 12.6 44 979-1027 649-692 (794)
414 COG3947 Response regulator con 61.0 28 0.00062 38.3 7.4 61 1180-1240 281-341 (361)
415 COG4455 ImpE Protein of avirul 60.7 2E+02 0.0043 30.8 13.0 119 976-1103 10-139 (273)
416 PF07721 TPR_4: Tetratricopept 59.8 13 0.00028 24.8 3.1 24 516-539 2-25 (26)
417 smart00777 Mad3_BUB1_I Mad3/BU 59.5 83 0.0018 30.6 9.7 58 636-695 65-124 (125)
418 PF12739 TRAPPC-Trs85: ER-Golg 58.5 2.1E+02 0.0045 34.4 15.3 43 968-1011 209-251 (414)
419 KOG2066|consensus 57.8 5E+02 0.011 33.0 26.4 72 837-911 367-440 (846)
420 COG5536 BET4 Protein prenyltra 57.0 1.1E+02 0.0023 33.8 10.8 136 1051-1224 90-239 (328)
421 PF12739 TRAPPC-Trs85: ER-Golg 56.3 2.9E+02 0.0064 33.1 16.1 29 1072-1100 372-401 (414)
422 KOG0276|consensus 56.3 81 0.0018 38.3 10.6 73 622-699 623-695 (794)
423 PF11817 Foie-gras_1: Foie gra 56.2 80 0.0017 34.8 10.5 23 939-961 183-205 (247)
424 PF00244 14-3-3: 14-3-3 protei 56.0 1.9E+02 0.0041 31.7 13.1 48 1051-1098 142-198 (236)
425 PF11817 Foie-gras_1: Foie gra 54.8 77 0.0017 35.0 10.1 76 949-1024 153-241 (247)
426 PF00244 14-3-3: 14-3-3 protei 54.0 2E+02 0.0044 31.4 13.0 30 863-892 4-33 (236)
427 KOG2114|consensus 53.5 6E+02 0.013 32.7 29.7 52 1186-1240 713-764 (933)
428 KOG4422|consensus 52.9 4.5E+02 0.0097 31.0 42.9 66 1035-1100 522-592 (625)
429 PF12854 PPR_1: PPR repeat 51.2 33 0.00071 24.6 4.3 29 964-992 4-32 (34)
430 KOG0686|consensus 51.1 4.7E+02 0.01 30.7 16.5 94 935-1028 151-256 (466)
431 PF14929 TAF1_subA: TAF RNA Po 49.6 6E+02 0.013 31.5 29.9 102 947-1052 322-429 (547)
432 PF10373 EST1_DNA_bind: Est1 D 49.6 48 0.001 37.1 7.7 62 986-1047 1-62 (278)
433 PF10516 SHNi-TPR: SHNi-TPR; 49.2 28 0.00061 25.9 3.6 27 1003-1029 3-29 (38)
434 COG5187 RPN7 26S proteasome re 48.6 4.2E+02 0.0092 29.5 14.9 171 842-1012 53-237 (412)
435 PF10373 EST1_DNA_bind: Est1 D 48.4 46 0.001 37.2 7.3 62 1020-1081 1-62 (278)
436 PF09797 NatB_MDM20: N-acetylt 48.3 5.1E+02 0.011 30.3 25.2 43 877-919 200-242 (365)
437 KOG0687|consensus 48.1 2.6E+02 0.0057 31.7 12.2 110 669-778 103-213 (393)
438 TIGR03504 FimV_Cterm FimV C-te 47.9 33 0.00072 26.5 4.0 25 750-774 3-27 (44)
439 KOG0686|consensus 47.3 5.3E+02 0.012 30.3 15.2 61 861-921 151-214 (466)
440 PF09670 Cas_Cas02710: CRISPR- 46.7 3.7E+02 0.008 31.8 14.6 54 977-1030 141-198 (379)
441 TIGR03362 VI_chp_7 type VI sec 46.4 4.9E+02 0.011 29.6 16.0 60 714-773 218-277 (301)
442 TIGR03504 FimV_Cterm FimV C-te 44.7 36 0.00078 26.3 3.7 25 1182-1206 3-27 (44)
443 PF09670 Cas_Cas02710: CRISPR- 43.9 4E+02 0.0086 31.5 14.3 57 865-921 136-196 (379)
444 PF13226 DUF4034: Domain of un 43.5 1.9E+02 0.0041 32.3 10.7 36 1051-1086 115-150 (277)
445 PF01535 PPR: PPR repeat; Int 42.4 36 0.00077 23.1 3.3 25 937-961 3-27 (31)
446 PF10579 Rapsyn_N: Rapsyn N-te 42.4 1.3E+02 0.0028 26.5 7.1 45 1013-1057 18-65 (80)
447 PRK12798 chemotaxis protein; R 42.1 6.6E+02 0.014 29.8 24.6 60 1001-1061 257-321 (421)
448 COG5536 BET4 Protein prenyltra 40.4 3E+02 0.0065 30.5 11.0 130 983-1112 90-236 (328)
449 KOG2063|consensus 40.0 9.7E+02 0.021 31.6 17.4 29 936-964 506-534 (877)
450 KOG4014|consensus 39.9 4.5E+02 0.0098 27.3 15.6 53 1187-1241 177-233 (248)
451 PF10255 Paf67: RNA polymerase 39.6 1.8E+02 0.0038 34.5 10.2 29 1000-1028 163-191 (404)
452 PF11846 DUF3366: Domain of un 38.6 94 0.002 32.7 7.4 49 950-998 127-175 (193)
453 PF09205 DUF1955: Domain of un 37.9 4.1E+02 0.0088 26.2 13.5 111 750-889 6-149 (161)
454 KOG2114|consensus 36.6 1.1E+03 0.023 30.6 29.6 54 1042-1098 712-765 (933)
455 COG3014 Uncharacterized protei 35.8 7.2E+02 0.016 28.5 16.5 28 748-775 127-154 (449)
456 PF01535 PPR: PPR repeat; Int 35.7 54 0.0012 22.2 3.4 26 749-774 3-28 (31)
457 TIGR00756 PPR pentatricopeptid 35.5 69 0.0015 22.1 4.0 27 937-963 3-29 (35)
458 PF04190 DUF410: Protein of un 33.9 7E+02 0.015 27.7 22.0 27 745-771 89-115 (260)
459 TIGR01987 HI0074 nucleotidyltr 33.9 4.5E+02 0.0097 25.5 11.8 85 494-588 2-87 (123)
460 KOG0687|consensus 33.8 7.7E+02 0.017 28.2 17.6 33 967-999 181-213 (393)
461 KOG2034|consensus 33.0 1.2E+03 0.027 30.3 28.5 19 611-629 363-381 (911)
462 PF10255 Paf67: RNA polymerase 32.0 76 0.0016 37.5 5.6 65 1180-1244 166-231 (404)
463 PF14863 Alkyl_sulf_dimr: Alky 31.9 2.4E+02 0.0051 28.1 8.3 51 965-1015 68-118 (141)
464 KOG4521|consensus 31.2 1.5E+03 0.032 30.6 18.8 29 894-922 920-948 (1480)
465 smart00777 Mad3_BUB1_I Mad3/BU 31.2 5E+02 0.011 25.2 12.8 77 688-771 44-124 (125)
466 cd02682 MIT_AAA_Arch MIT: doma 30.5 1.7E+02 0.0038 25.5 6.1 17 593-609 4-20 (75)
467 PF13226 DUF4034: Domain of un 30.2 7.9E+02 0.017 27.6 12.8 41 876-916 115-155 (277)
468 PTZ00046 rifin; Provisional 29.9 76 0.0017 36.4 5.0 51 320-370 67-119 (358)
469 PF15297 CKAP2_C: Cytoskeleton 29.6 3E+02 0.0066 31.6 9.5 72 720-791 113-186 (353)
470 smart00671 SEL1 Sel1-like repe 29.4 1E+02 0.0022 21.8 4.1 28 1180-1207 3-34 (36)
471 TIGR00756 PPR pentatricopeptid 29.2 1E+02 0.0022 21.2 4.1 26 749-774 3-28 (35)
472 PF13812 PPR_3: Pentatricopept 28.4 1.3E+02 0.0027 20.9 4.4 26 937-962 4-29 (34)
473 PF11846 DUF3366: Domain of un 28.2 1.8E+02 0.0039 30.5 7.4 45 987-1032 131-175 (193)
474 PF14863 Alkyl_sulf_dimr: Alky 27.9 1.4E+02 0.0031 29.7 5.9 52 1177-1228 69-120 (141)
475 cd02682 MIT_AAA_Arch MIT: doma 27.0 4E+02 0.0086 23.4 7.7 17 845-861 32-48 (75)
476 PF03670 UPF0184: Uncharacteri 27.0 1.4E+02 0.0031 26.4 5.0 30 165-194 46-75 (83)
477 cd02680 MIT_calpain7_2 MIT: do 26.9 95 0.0021 27.1 3.9 14 981-994 20-33 (75)
478 PF07840 FadR_C: FadR C-termin 26.8 5.5E+02 0.012 26.3 9.9 76 500-579 8-88 (164)
479 PF10587 EF-1_beta_acid: Eukar 26.6 64 0.0014 22.1 2.1 16 139-155 1-16 (28)
480 PRK15338 type III secretion sy 26.6 7.6E+02 0.017 28.8 12.1 139 957-1099 82-230 (372)
481 PF08238 Sel1: Sel1 repeat; I 25.8 1.2E+02 0.0026 21.9 4.0 29 1179-1207 2-37 (39)
482 TIGR01477 RIFIN variant surfac 25.7 93 0.002 35.7 4.7 51 320-370 70-122 (353)
483 cd02680 MIT_calpain7_2 MIT: do 25.4 94 0.002 27.2 3.6 34 983-1031 3-36 (75)
484 PF04840 Vps16_C: Vps16, C-ter 25.3 1.1E+03 0.023 27.2 29.0 81 714-805 182-262 (319)
485 PF04090 RNA_pol_I_TF: RNA pol 25.3 8.4E+02 0.018 25.9 12.5 60 751-810 46-106 (199)
486 PHA03321 tegument protein VP11 25.1 42 0.00091 40.6 1.9 18 80-97 515-532 (694)
487 PF04762 IKI3: IKI3 family; I 24.8 1.1E+03 0.023 31.8 14.9 52 1015-1066 792-845 (928)
488 KOG3910|consensus 24.4 3.5E+02 0.0075 32.2 8.8 41 145-198 510-550 (632)
489 PRK09687 putative lyase; Provi 24.3 1E+03 0.023 26.7 30.0 44 1195-1243 222-265 (280)
490 cd02683 MIT_1 MIT: domain cont 24.3 4.9E+02 0.011 22.8 9.1 15 757-771 17-31 (77)
491 KOG4279|consensus 24.0 5.4E+02 0.012 32.4 10.7 67 839-906 256-332 (1226)
492 PF08780 NTase_sub_bind: Nucle 23.8 4.6E+02 0.01 25.4 8.6 97 494-603 3-108 (124)
493 COG4016 Uncharacterized protei 23.0 1.1E+02 0.0024 29.4 3.9 22 66-87 98-119 (165)
494 KOG4814|consensus 22.4 1.6E+03 0.035 28.2 35.3 97 714-810 359-458 (872)
495 PF10952 DUF2753: Protein of u 22.4 3.5E+02 0.0076 26.1 6.9 68 1181-1248 4-90 (140)
496 PF12380 Peptidase_C62: Gill-a 22.0 33 0.00071 34.2 0.3 61 14-85 212-283 (284)
497 PF14929 TAF1_subA: TAF RNA Po 21.9 1.6E+03 0.035 27.9 29.0 24 672-695 135-158 (547)
498 PF13812 PPR_3: Pentatricopept 21.8 2E+02 0.0042 19.8 4.3 25 673-697 4-28 (34)
499 KOG3895|consensus 21.5 48 0.001 37.1 1.4 39 31-77 17-55 (488)
500 cd02677 MIT_SNX15 MIT: domain 21.3 3.2E+02 0.0069 23.9 6.2 16 529-544 20-35 (75)
No 1
>KOG0495|consensus
Probab=100.00 E-value=4e-156 Score=1296.57 Aligned_cols=900 Identities=68% Similarity=1.102 Sum_probs=843.8
Q ss_pred cccccCCCCCCCCCccCCCCCCCCccccCCCccCCCCCCCCcccccccccccCCCcccccccccCCCCCCCCCCCcccCC
Q psy3224 61 KSKHFMGVPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAAPVKRKKKDEEEDDEEDLNDSNFDEFNGYGGSLF 140 (1278)
Q Consensus 61 ~~~~f~~~~~p~~yv~g~grga~gf~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 140 (1278)
.+++||+||||+|||||||||||||||||||||||++++.+ ...++|.++. .++|++|+++.+||||+||++|||
T Consensus 13 ~r~~Fl~~~pP~gYVaGlGRGATGFTTRsdigpArd~~~~~-~~~~~~~~~~----~e~d~e~~~~~~ydefeg~~~~lf 87 (913)
T KOG0495|consen 13 PRPDFLGMPPPSGYVAGLGRGATGFTTRSDIGPARDAPDLP-SGKAAPEKRK----SEDDEEDDNDINYDEFEGNDGSLF 87 (913)
T ss_pred CCccccCCCCCCCcCCCcCCCccCccchhhcCcccCCcccC-CCccchhhhh----ccchhhhcccCCccccccccchhh
Confidence 78999999999999999999999999999999999887655 2333343332 234447899999999999999999
Q ss_pred CCCCCCCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhcccCChHHhhcccccccccCC
Q psy3224 141 NKDPYDKDDEEADMIYEEIDKRMDEKRKDYREKRLREELERYRQERPKIQQQFSDLKRGLVTVSMDEWKNEGQVVGQAIP 220 (1278)
Q Consensus 141 ~~~~~~~~d~ead~i~~~~d~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~qf~~lkr~l~~~~~~~w~~~~~~~~~~~~ 220 (1278)
+++|||+||+|||+||++||.|||+|||+|||+++++++|+||.+||||||||+||||+|++||+|||.+||+
T Consensus 88 a~~pyD~eDeEAd~Iy~sid~rld~rrK~rre~k~ke~iE~y~~e~pkv~~QFaDLKr~LatvTe~EW~~IPE------- 160 (913)
T KOG0495|consen 88 ASAPYDDEDEEADAIYDSIDLRLDERRKERREKKLKEEIEKYRKENPKVQQQFADLKRKLATVTEDEWDSIPE------- 160 (913)
T ss_pred cCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHhhcCHHHhhcCCc-------
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987433
Q ss_pred CCCCcccccCCCCCCCCCCCCCCcCCCCCCcccccccccCCCCCCCCCCCcccccccccccccCcccccccccCCCCCcc
Q psy3224 221 PPPIPLVNRNKKHFMGVPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAAPVKRKKKDEEEDDEEDLNDSNFDE 300 (1278)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~r~~~~~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1278)
T Consensus 161 -------------------------------------------------------------------------------- 160 (913)
T KOG0495|consen 161 -------------------------------------------------------------------------------- 160 (913)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhhhhhhhhhccCcCChHhhhcC
Q psy3224 301 FNGYGGSLFNKDPYDKDDEEADMIYEEIDKRMDEKRKDYREKRLREELERYRQERPKIQQQFSDLKRGLVTVSMDEWKNV 380 (1278)
Q Consensus 301 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~l~~~~~~~w~~~ 380 (1278)
T Consensus 161 -------------------------------------------------------------------------------- 160 (913)
T KOG0495|consen 161 -------------------------------------------------------------------------------- 160 (913)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccchhcccccccccccccCCcchhccCC-CCCCcccccCCCCCccCCCCCCCCCCCCCCcccchHHhHHHHHhHhhh
Q psy3224 381 PEVGDARNRKQRNPRAEKFTPLPDSVLRGNL-GGESTGAIDPNSGLMSQIPGTATPGMLTPSGDLDLRKMGQARNTLMNV 459 (1278)
Q Consensus 381 ~~~g~~~~~~~~~~~~~~~~~~~ds~~~~~~-~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~di~kar~~l~~~ 459 (1278)
+||+|+|++|+++..||+++|||++.+.+ .++..+++||+||+.|++.+. + .+...+|++||..|+++
T Consensus 161 --vgD~r~r~krn~r~Ekf~p~pds~~~~~~~~~~~~~~ld~~~g~etp~~~g----~-----~t~~~kig~ar~~l~~~ 229 (913)
T KOG0495|consen 161 --VGDYRNRNKRNPRAEKFTPVPDSLLASAINENEDSSSLDPEGGLETPLQSG----Q-----MTPGVKIGQARNTLMDM 229 (913)
T ss_pred --ccchhhhhhccchhhhcCCCchHHHHHhcccCccccccCccCCccCCCcCC----C-----cCccchhhHHHHHHHhh
Confidence 33333444444455778888888888877 577789999999998887551 1 22344999999999999
Q ss_pred hhhhccCCCcCCCcCChhhhHhhhhccCCCcccccchHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Q psy3224 460 KLNQISDSVVGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIM 539 (1278)
Q Consensus 460 ~l~~~~~sv~~~~~~~~~g~ia~a~~~l~~~~~~~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~ 539 (1278)
+|+++++||++++..||+||++.+.+.+-...+.++|+++||.+++++.+.||+||.+|+..||++...|++..|+.++.
T Consensus 230 kl~qvsdsvtgqtvvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~ 309 (913)
T KOG0495|consen 230 KLNQVSDSVTGQTVVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIM 309 (913)
T ss_pred hhhhccccCCCCcccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCHHHHHHHHhcCCchHHHHHHHHHHHhCCCCHHHHHHHHHchhhHHHHHHHHHHHHHhCCCCHHHHHHHHhc
Q psy3224 540 KGCEENQTSEDLWLEAARLQPVDTARAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLWKAAVEL 619 (1278)
Q Consensus 540 ~al~~~P~s~~lwl~~a~L~~~~~A~~~l~kaL~~~P~s~~lw~~~~~le~~~~~A~~ll~rAle~~P~s~~Lw~al~~l 619 (1278)
++|+.||+|.++||++++|+.++.|+.++.+|+.++|+|+.+|++++.|+.+..+..+++++||+.+|+|+.||++.+.+
T Consensus 310 ~GCe~cprSeDvWLeaiRLhp~d~aK~vvA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVel 389 (913)
T KOG0495|consen 310 KGCEECPRSEDVWLEAIRLHPPDVAKTVVANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVEL 389 (913)
T ss_pred HHHhhCCchHHHHHHHHhcCChHHHHHHHHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 620 EDPEDARILLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSS 699 (1278)
Q Consensus 620 ~~~e~A~~~l~kal~~~P~~~~~w~~la~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~ 699 (1278)
++.+.|+.+|.+|++++|.+.++|++|++|+.|++|.++++++.+..|.++.+|+..+.+.+.+|+.+...+|+.+.+..
T Consensus 390 E~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~ 469 (913)
T KOG0495|consen 390 EEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSE 469 (913)
T ss_pred cChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy3224 700 LSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSK 779 (1278)
Q Consensus 700 ~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~ 779 (1278)
+..+|+..+++.|+..|+.|...|...+|.+|+..++..+.+..+....|+.-++.+...+.++-|+.+|..+++.+|..
T Consensus 470 L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k 549 (913)
T KOG0495|consen 470 LQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCK 549 (913)
T ss_pred HhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q psy3224 780 KSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKS 859 (1278)
Q Consensus 780 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~ 859 (1278)
..+|...+.+...+|..++ ...++++++..+|..
T Consensus 550 ~slWlra~~~ek~hgt~Es----------------------------------------------l~Allqkav~~~pka 583 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRES----------------------------------------------LEALLQKAVEQCPKA 583 (913)
T ss_pred hHHHHHHHHHHHhcCcHHH----------------------------------------------HHHHHHHHHHhCCcc
Confidence 8888877777777766665 666778888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHH
Q psy3224 860 EVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLA 939 (1278)
Q Consensus 860 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~ 939 (1278)
+.+|++++..++..|+...|+.++.++++.+|++.++|+....++.
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~---------------------------------- 629 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEF---------------------------------- 629 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhh----------------------------------
Confidence 9999999999999999999999999999999999999999998887
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHH
Q psy3224 940 AVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDK 1019 (1278)
Q Consensus 940 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 1019 (1278)
...++++|+.+|.++....|+..+|+..+.+.+.+++.++|+.+++++++.+|++..+|+.+|+++.+.++.+.
T Consensus 630 ------en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 630 ------ENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred ------ccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHH
Confidence 56667777777777777889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q psy3224 1020 AHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQEC 1099 (1278)
Q Consensus 1020 A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~ 1099 (1278)
|+..|...++.||+++.+|..++.+..+.|...+|+.+|+++...+|++..+|+..++++.+.|+.++|..++.++|+.|
T Consensus 704 aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec 783 (913)
T KOG0495|consen 704 AREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQEC 783 (913)
T ss_pred HHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHH
Q psy3224 1100 PNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPH 1179 (1278)
Q Consensus 1100 P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~ 1179 (1278)
|+++.+|...+.+..+.++..+++++|++|.+||+
T Consensus 784 p~sg~LWaEaI~le~~~~rkTks~DALkkce~dph--------------------------------------------- 818 (913)
T KOG0495|consen 784 PSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPH--------------------------------------------- 818 (913)
T ss_pred CccchhHHHHHHhccCcccchHHHHHHHhccCCch---------------------------------------------
Confidence 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchhhhhhhccccC
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCRVAKNVSNW 1259 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w~~~~k~~~~~ 1259 (1278)
++..+|.+||...++++|++||.++++.+|+++|+|.+++.++..+|+.++-.+++.+|...+|.||+.|+.+.|++.||
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i~n~ 898 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDIKNW 898 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhhC
Q psy3224 1260 KLPRETILSLVAKDL 1274 (1278)
Q Consensus 1260 ~~~~~~~l~~~~~~~ 1274 (1278)
+++++|||..+...+
T Consensus 899 ~~t~~eiL~~~~n~l 913 (913)
T KOG0495|consen 899 RKTPEEILLLVVNDL 913 (913)
T ss_pred cCCHHHHHHHHhccC
Confidence 999999999998654
No 2
>KOG0495|consensus
Probab=100.00 E-value=2.6e-82 Score=706.33 Aligned_cols=664 Identities=27% Similarity=0.434 Sum_probs=614.9
Q ss_pred ccccchhcccccccccccccCCcchhccCCCCCCcccccCCCCCccCCCCCCCCCCCCCCcccchHHhHHHHHhHhhhhh
Q psy3224 382 EVGDARNRKQRNPRAEKFTPLPDSVLRGNLGGESTGAIDPNSGLMSQIPGTATPGMLTPSGDLDLRKMGQARNTLMNVKL 461 (1278)
Q Consensus 382 ~~g~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~t~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~di~kar~~l~~~~l 461 (1278)
.||.+|.+.. ..|+.++|||| +|+|+|||| ||+|+|++ | +++++.||+||+|||.+|+|
T Consensus 218 kig~ar~~l~----~~kl~qvsdsv-------tgqtvvDpk-gYLtdL~s-----m-~p~~~~dl~DikKaR~llKS--- 276 (913)
T KOG0495|consen 218 KIGQARNTLM----DMKLNQVSDSV-------TGQTVVDPK-GYLTDLNS-----M-IPTSGGDLEDIKKARLLLKS--- 276 (913)
T ss_pred hhhHHHHHHH----hhhhhhccccC-------CCCcccCch-HHHhHHHh-----c-CCCccCcHHHHHHHHHHHHH---
Confidence 6899988877 47899999999 689999999 55666654 3 34567899999999999965
Q ss_pred hhccCCCcCCCcCChhhhHhhhhccCCCcccccchHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy3224 462 NQISDSVVGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKG 541 (1278)
Q Consensus 462 ~~~~~sv~~~~~~~~~g~ia~a~~~l~~~~~~~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~a 541 (1278)
|+++||+||+||||++|. ++..|+++.|+.++.++|+.||+++++|++.+|++ ..+.|+.++++|
T Consensus 277 ------vretnP~hp~gWIAsArL-----EEvagKl~~Ar~~I~~GCe~cprSeDvWLeaiRLh----p~d~aK~vvA~A 341 (913)
T KOG0495|consen 277 ------VRETNPKHPPGWIASARL-----EEVAGKLSVARNLIMKGCEECPRSEDVWLEAIRLH----PPDVAKTVVANA 341 (913)
T ss_pred ------HHhcCCCCCchHHHHHHH-----HHHhhHHHHHHHHHHHHHhhCCchHHHHHHHHhcC----ChHHHHHHHHHH
Confidence 889999999999999998 88899999999999999999999999999999998 789999999999
Q ss_pred HHhcCCCHHHHHHHHhcCCch-HHHHHHHHHHHhCCCCHHHHHHHHHchhhHHHHHHHHHHHHHhCCCCHHHHHHHHhcC
Q psy3224 542 CEENQTSEDLWLEAARLQPVD-TARAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLWKAAVELE 620 (1278)
Q Consensus 542 l~~~P~s~~lwl~~a~L~~~~-~A~~~l~kaL~~~P~s~~lw~~~~~le~~~~~A~~ll~rAle~~P~s~~Lw~al~~l~ 620 (1278)
++++|+|+.+|+.+++|++.- ..++++++||+++|+|++||+.+++|+...+ |++++.||++|||.|.+||++|++++
T Consensus 342 vr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~d-arilL~rAveccp~s~dLwlAlarLe 420 (913)
T KOG0495|consen 342 VRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPED-ARILLERAVECCPQSMDLWLALARLE 420 (913)
T ss_pred HHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHH-HHHHHHHHHHhccchHHHHHHHHHHH
Confidence 999999999999999999665 4679999999999999999999999996544 99999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHhc----CHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 621 DPEDARILLSRAVECCPTSVELWLALARLE----TYENARKVLNKARENI-----PTDRQIWTTAAKLEEAHGNNAMVDK 691 (1278)
Q Consensus 621 ~~e~A~~~l~kal~~~P~~~~~w~~la~l~----~~~~A~~~l~~al~~~-----p~~~~~~~~la~~~~~~g~~~~A~~ 691 (1278)
.|++|+++|++|++..|+++++|+..++|+ +.+...+++.+.+... ..+.+.|+.-|..++..|...+|.+
T Consensus 421 tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQA 500 (913)
T KOG0495|consen 421 TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQA 500 (913)
T ss_pred HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHH
Confidence 999999999999999999999999999984 5777777777776643 3378999999999999999999999
Q ss_pred HHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 692 IIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQ 771 (1278)
Q Consensus 692 il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 771 (1278)
|+..++...-.. ++...+|+..|..|.+.+.++.|+++|..++..++. +..+|...+.+....|..+.-..+|++
T Consensus 501 Ii~avigigvEe--ed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~---k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 501 IIRAVIGIGVEE--EDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC---KKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred HHHHHHhhcccc--chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999873332 355779999999999999999999999999998765 467999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy3224 772 ALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQK 851 (1278)
Q Consensus 772 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~ 851 (1278)
++...|....+|+.++..+...|+...|+.++.++++.+|++.. +|+....++....++++|+.+|.+
T Consensus 576 av~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnsee------------iwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 576 AVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEE------------IWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHH------------HHHHHHHHhhccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999865 788889999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCC
Q psy3224 852 AVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANP 931 (1278)
Q Consensus 852 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p 931 (1278)
+....|. ..+|+..+.+.+.+++.++|+.+++.+++.+|+...+|+.+|+++.+.++.+.|+..|...+ +.+|
T Consensus 644 ar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~------k~cP 716 (913)
T KOG0495|consen 644 ARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGT------KKCP 716 (913)
T ss_pred HhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc------ccCC
Confidence 9997775 57799999999999999999999999999999999999999999999999999999999987 9999
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy3224 932 NSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQI 1010 (1278)
Q Consensus 932 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 1010 (1278)
..+.+|..++.+....|+.-+|+.+++++.-.+|. ..+|+...++..+.|+.+.|..++.+||+.+|++..+|..-+.+
T Consensus 717 ~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWL 796 (913)
T ss_pred CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHh
Confidence 99999999999999999999999999999999996 69999999999999999999999999999999999999999998
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 1011 EEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANT 1090 (1278)
Q Consensus 1011 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 1090 (1278)
.-+.++-..+++ |++.|.+++.+++.++.+++...++++|++||+++++.+|+++++|..+..++.++|..++-.+
T Consensus 797 e~~~~rkTks~D----ALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 797 EPRPQRKTKSID----ALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred ccCcccchHHHH----HHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHH
Confidence 888888666655 8888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCcHHHHHHHH
Q psy3224 1091 MMAKALQECPNAGILWAEAI 1110 (1278)
Q Consensus 1091 ~~~kal~~~P~~~~~~~~~~ 1110 (1278)
++.++....|.+++.|....
T Consensus 873 v~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 873 VLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHhccCCCCCcHHHHHh
Confidence 99999999999999998543
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-49 Score=529.04 Aligned_cols=726 Identities=17% Similarity=0.144 Sum_probs=512.3
Q ss_pred hHHhHHHHHhHhhhhhhhccCCCcCCCcCChhhhHhhhhccCCCcccccchHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy3224 446 LRKMGQARNTLMNVKLNQISDSVVGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLE 525 (1278)
Q Consensus 446 ~~di~kar~~l~~~~l~~~~~sv~~~~~~~~~g~ia~a~~~l~~~~~~~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~ 525 (1278)
.+++.+|...|.. ++..+|.++..|+..+.. +...|++++|..+++++++.+|.+..+|..++.++
T Consensus 138 ~~~~~~A~~~~~~---------a~~~~~~~~~~~~~la~~-----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (899)
T TIGR02917 138 LGQLELAQKSYEQ---------ALAIDPRSLYAKLGLAQL-----ALAENRFDEARALIDEVLTADPGNVDALLLKGDLL 203 (899)
T ss_pred cCCHHHHHHHHHH---------HHhcCCCChhhHHHHHHH-----HHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3456666666632 444566666666665544 55567777777777777777777777777777777
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH----hcCCchHHHHHHHHHHHhCCCCHHHHHHHHHch---hhHHHHHHH
Q psy3224 526 EVTGKVQAARNLIMKGCEENQTSEDLWLEAA----RLQPVDTARAVIAQAVRHIPTSVRIWIKAADLE---TETKAKRRV 598 (1278)
Q Consensus 526 ~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a----~L~~~~~A~~~l~kaL~~~P~s~~lw~~~~~le---~~~~~A~~l 598 (1278)
...|++++|...|.+++..+|.+..+|...+ ..++.+.|...++++++..|+++..+...+.+. .+.+.|...
T Consensus 204 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 283 (899)
T TIGR02917 204 LSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARET 283 (899)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHH
Confidence 7777777777777777777777777664443 245667777777777777777665444333221 256667777
Q ss_pred HHHHHHhCCCCHHHH----HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH----HhcCHHHHHHHHHHHHHhCCCCH
Q psy3224 599 YRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELWLALA----RLETYENARKVLNKARENIPTDR 670 (1278)
Q Consensus 599 l~rAle~~P~s~~Lw----~al~~l~~~e~A~~~l~kal~~~P~~~~~w~~la----~l~~~~~A~~~l~~al~~~p~~~ 670 (1278)
|+++++..|.....+ ..+...|++++|..+|.++++..|.++..+..++ +.+++++|...+.+++...|.+.
T Consensus 284 ~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 363 (899)
T TIGR02917 284 LQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDP 363 (899)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 777777777665322 2355667777777777777777777766654433 45777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHH
Q psy3224 671 QIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWM 750 (1278)
Q Consensus 671 ~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~ 750 (1278)
..|..++.++...|++++|...|++++...|. ....|...+..+...|++..|...+..++...+.. ...+.
T Consensus 364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~ 435 (899)
T TIGR02917 364 AALSLLGEAYLALGDFEKAAEYLAKATELDPE-----NAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL---GRADL 435 (899)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcc---hhhHH
Confidence 77777777777777777777777777765332 24466667777777777777777777777655433 34556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHH
Q psy3224 751 EDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWL 830 (1278)
Q Consensus 751 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l 830 (1278)
.++..+...|++++|+.++++.+...|.+..+|..++.++...|++++|..+|+++++..|.+.. .+.
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------~~~ 503 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP------------AAA 503 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH------------HHH
Confidence 66777777777777777777777777777777777777777777777777777777777776643 455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcH
Q psy3224 831 RAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEY 910 (1278)
Q Consensus 831 ~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~ 910 (1278)
..+.++...|++++|+..|++++...|.+..++..++.++...|++++|+..+.+++...|.+...+..++.++...|++
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 583 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQL 583 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCH
Confidence 56666667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 911 ERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQL 989 (1278)
Q Consensus 911 ~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~ 989 (1278)
++|+.++++++ ...|.++.+|..++.++...|++++|+..|++++...|. +..+..++.++...|++++|..+
T Consensus 584 ~~A~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 657 (899)
T TIGR02917 584 KKALAILNEAA------DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657 (899)
T ss_pred HHHHHHHHHHH------HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 77777777776 666777777777777777777777777777777777664 56677777777777777777777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy3224 990 LDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCA 1069 (1278)
Q Consensus 990 l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~ 1069 (1278)
|++++..+|++...+..++.++...|++++|..+++.+....|.++..+..++.++...|++++|+..|++++...|++
T Consensus 658 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~- 736 (899)
T TIGR02917 658 LKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS- 736 (899)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777777777766
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhccc
Q psy3224 1070 ELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKN 1149 (1278)
Q Consensus 1070 ~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~ 1149 (1278)
..+..++.++...|++++|...+.+++...|++..++..++.++...|++++|...|+++.
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~------------------- 797 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVV------------------- 797 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH-------------------
Confidence 4556677777777777777777777777777777777777777777777777777777661
Q ss_pred ccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHH
Q psy3224 1150 QKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEE 1229 (1278)
Q Consensus 1150 ~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~ 1229 (1278)
+..|+++.++..+|+++...|+ .+|+.++++++...|+++.++..++.++...|+++
T Consensus 798 ----------------------~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 798 ----------------------KKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred ----------------------HhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 2334455566666666666666 66666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhCCCCcchhhhhhh
Q psy3224 1230 TQAEVKKRCLAAEPKHGENWCRVAK 1254 (1278)
Q Consensus 1230 ~A~~~l~ka~~~~P~~~~~w~~~~k 1254 (1278)
+|.++++++++..|.++.++..++.
T Consensus 855 ~A~~~~~~a~~~~~~~~~~~~~l~~ 879 (899)
T TIGR02917 855 RALPLLRKAVNIAPEAAAIRYHLAL 879 (899)
T ss_pred HHHHHHHHHHhhCCCChHHHHHHHH
Confidence 6666666666666666666666655
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.1e-49 Score=524.05 Aligned_cols=768 Identities=17% Similarity=0.129 Sum_probs=553.9
Q ss_pred chHHhHHHHHhHhhhhhhhccCCCcCCCcCChhhhHhhhhccCCCcccccchHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q psy3224 445 DLRKMGQARNTLMNVKLNQISDSVVGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARL 524 (1278)
Q Consensus 445 ~~~di~kar~~l~~~~l~~~~~sv~~~~~~~~~g~ia~a~~~l~~~~~~~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl 524 (1278)
..|+...|...+.. ++..+|.++..|...+.. +...|++++|...++++++..|.+..++..++++
T Consensus 34 ~~~~~~~A~~~~~~---------~~~~~p~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 99 (899)
T TIGR02917 34 QKNKYKAAIIQLKN---------ALQKDPNDAEARFLLGKI-----YLALGDYAAAEKELRKALSLGYPKNQVLPLLARA 99 (899)
T ss_pred HcCChHhHHHHHHH---------HHHhCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHH
Confidence 34566667666633 556688888877665544 7788999999999999999888877776666666
Q ss_pred HHhcCCHHHHHHHHHHHH-HhcCCCHHHHHH----HHhcCCchHHHHHHHHHHHhCCCCHHHHHHHHHchh---hHHHHH
Q psy3224 525 EEVTGKVQAARNLIMKGC-EENQTSEDLWLE----AARLQPVDTARAVIAQAVRHIPTSVRIWIKAADLET---ETKAKR 596 (1278)
Q Consensus 525 ~~~~g~~~~A~~~l~~al-~~~P~s~~lwl~----~a~L~~~~~A~~~l~kaL~~~P~s~~lw~~~~~le~---~~~~A~ 596 (1278)
+...|++++|..++.++. ...|....++.. +...++++.|...|+++++..|+++..|...+.+.. +.+.|.
T Consensus 100 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~ 179 (899)
T TIGR02917 100 YLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEAR 179 (899)
T ss_pred HHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHH
Confidence 666666666665555443 222333333322 122345555666666666666666555555444332 345555
Q ss_pred HHHHHHHHhCCCCHHHHHH----HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH----HhcCHHHHHHHHHHHHHhCCC
Q psy3224 597 RVYRKALEHIPNSVRLWKA----AVELEDPEDARILLSRAVECCPTSVELWLALA----RLETYENARKVLNKARENIPT 668 (1278)
Q Consensus 597 ~ll~rAle~~P~s~~Lw~a----l~~l~~~e~A~~~l~kal~~~P~~~~~w~~la----~l~~~~~A~~~l~~al~~~p~ 668 (1278)
.+++++++.+|.+...|.. +...|++++|...|+++++..|.+..+|..++ ..+++++|...++++++..|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 259 (899)
T TIGR02917 180 ALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN 259 (899)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6666666666655544433 23345666666666666666665555554332 335555555555555555555
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhh
Q psy3224 669 DRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHT 748 (1278)
Q Consensus 669 ~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~ 748 (1278)
++..++..+.++...|++++|...+++++...|.. ...+...+..+...|+++.|...+..++...+.. ...
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~ 331 (899)
T TIGR02917 260 SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEY-----LPALLLAGASEYQLGNLEQAYQYLNQILKYAPNS---HQA 331 (899)
T ss_pred CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc-----hhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHH
Confidence 55555555555555555555555555555443221 1233344444445555555555555554443322 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcc------
Q psy3224 749 WMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAK------ 822 (1278)
Q Consensus 749 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~------ 822 (1278)
+..++.++...|++++|+..+++++..+|.+..++..++.++...|++++|...|++++...|.+...|...+.
T Consensus 332 ~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 411 (899)
T TIGR02917 332 RRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQG 411 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Confidence 44444444444555555555554444444444444444444444455555554554444444444332221100
Q ss_pred ----------------cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 823 ----------------SNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLA 886 (1278)
Q Consensus 823 ----------------~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~a 886 (1278)
+.....+...+..+...|++++|+.++++++...|.++.+|..+|.++...|++++|+.+|.++
T Consensus 412 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 491 (899)
T TIGR02917 412 DPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKA 491 (899)
T ss_pred ChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 0112234455666677899999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 887 FQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT 966 (1278)
Q Consensus 887 l~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 966 (1278)
++..|++..++..++.++...|++++|...|++++ ...|.+..++..++.++...|++++|+..+++++...|.
T Consensus 492 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 565 (899)
T TIGR02917 492 LSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL------TIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ 565 (899)
T ss_pred HhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH------HhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999999999987 778999999999999999999999999999999998885
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy3224 967 -PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLE 1045 (1278)
Q Consensus 967 -~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~ 1045 (1278)
...+..++.++...|++++|+.++++++...|.++.+|..+|.++...|++++|+.+|+++++..|.++..+..++.++
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY 645 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 5788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHH
Q psy3224 1046 ERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDA 1125 (1278)
Q Consensus 1046 ~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~ 1125 (1278)
...|++++|..+|++++..+|++...|..++.++...|++++|..++..+....|.+...+..++.++...|++++|+..
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-ccCcchhh--hhhhhhhhhcccccccccCccccccccchh----hhhhhhCCCCHHHHHHHHHHHHhcCCHHHHH
Q psy3224 1126 LKKC-EHDPHVLL--AVSKLFWCENKNQKCHRSGSRRCMGVKTKS----VDALKKCEHDPHVLLAVSKLFWCENKNQKCR 1198 (1278)
Q Consensus 1126 l~k~-~~~p~~~~--~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a----~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~ 1198 (1278)
|+++ ...|.... ....... ..+....+ ...++..|+++.+++.+|.+|...|++++|+
T Consensus 726 ~~~~~~~~~~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~ 790 (899)
T TIGR02917 726 YRKALKRAPSSQNAIKLHRALL---------------ASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAI 790 (899)
T ss_pred HHHHHhhCCCchHHHHHHHHHH---------------HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 9988 44454211 1111111 12222333 3345678999999999999999999999999
Q ss_pred HHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchhhhhhhcc
Q psy3224 1199 EWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCRVAKNV 1256 (1278)
Q Consensus 1199 ~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w~~~~k~~ 1256 (1278)
.+|+++++.+|+++.++..++.++...|+ .+|..++++++...|+++..|..++.-.
T Consensus 791 ~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 791 KHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 99999999999999999999999999999 8899999999999999999998877643
No 5
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=100.00 E-value=1.4e-54 Score=404.49 Aligned_cols=127 Identities=66% Similarity=1.087 Sum_probs=115.3
Q ss_pred CCCCCccCCCCCCCCccccCCCccCCCCCCCCcccccccccccCCCcccccccccCCCCCCCCCCCcccCCCCCCCCCCh
Q psy3224 70 APLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAAPVKRKKKDEEEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDD 149 (1278)
Q Consensus 70 ~p~~yv~g~grga~gf~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~d 149 (1278)
||||||||||||||||||||||||||.+++ ...+++++.++.+|++ ||++|||++++||+||
T Consensus 1 pPpgYVaGlGRGAtGFtTrsdiGpar~~~~----------------~~~~~~~~~~~~~~~~--~~~~~lf~~~~yD~dD 62 (133)
T PF06424_consen 1 PPPGYVAGLGRGATGFTTRSDIGPAREGPD----------------DEEDDEEDDDDERFDD--GYNEGLFASGPYDDDD 62 (133)
T ss_pred CCCCcCCCcccCCcCCCCcccCCccccccc----------------cccccccccchhhcCc--ccccccccCCCCccch
Confidence 799999999999999999999999996532 1234445667788888 6788999999999999
Q ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhhhhhhcccCChHHhhccccc
Q psy3224 150 EEADMIYEEIDKRMDEKRKDYREKRLREELERYRQERPKIQQQFSDLKRGLVTVSMDEWKNEGQV 214 (1278)
Q Consensus 150 ~ead~i~~~~d~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~qf~~lkr~l~~~~~~~w~~~~~~ 214 (1278)
+|||+||++||+||++|||++||+++++++++|+++|||||+||+||||+|++||+|||+|||++
T Consensus 63 ~EAD~Iy~~ID~rmd~Rrk~~re~~~~~e~e~~~~~~pkI~~QFaDLKR~La~VS~eeW~~IPE~ 127 (133)
T PF06424_consen 63 EEADRIYESIDRRMDSRRKKRREAREKEEIEKYRKENPKIQQQFADLKRSLATVSEEEWENIPEA 127 (133)
T ss_pred HHHHHHHHHHHHHHHhcccchhhhhhhhHHHhhhccCchHHHHHHHHHHHHccCCHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999997653
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.8e-40 Score=440.16 Aligned_cols=675 Identities=15% Similarity=0.074 Sum_probs=496.9
Q ss_pred hHhhhhccCCCcccccchHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHhc
Q psy3224 479 YLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARL 558 (1278)
Q Consensus 479 ~ia~a~~~l~~~~~~~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~L 558 (1278)
.+..+|. ....++.+.|+..+.+++..+|++++++..+++++...|++++|...++++++.+|++..++...
T Consensus 31 Ll~q~~~-----~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~--- 102 (1157)
T PRK11447 31 LLEQVRL-----GEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSR--- 102 (1157)
T ss_pred HHHHHHH-----HHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHH---
Confidence 4555666 45568999999999999999999999999999999999999999999999999999998776322
Q ss_pred CCchHHHHHHHHHHHhCCCCHHHHHHHHHch---hhHHHHHHHHHHHHHhCCCCHH----HHHHHHh-cCCHHHHHHHHH
Q psy3224 559 QPVDTARAVIAQAVRHIPTSVRIWIKAADLE---TETKAKRRVYRKALEHIPNSVR----LWKAAVE-LEDPEDARILLS 630 (1278)
Q Consensus 559 ~~~~~A~~~l~kaL~~~P~s~~lw~~~~~le---~~~~~A~~ll~rAle~~P~s~~----Lw~al~~-l~~~e~A~~~l~ 630 (1278)
..+...+.+.+.++..+.+. .+.++|...|+++++..|.+.. +|..... .+++++|+..|+
T Consensus 103 -----------~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~ 171 (1157)
T PRK11447 103 -----------TTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQ 171 (1157)
T ss_pred -----------HHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHH
Confidence 12222222222222221111 1344555555555555554432 2222221 245555555555
Q ss_pred HHHHhCCCCHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCcc
Q psy3224 631 RAVECCPTSVELWLALARL----ETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVE 706 (1278)
Q Consensus 631 kal~~~P~~~~~w~~la~l----~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~ 706 (1278)
++++.+|.+..++..++++ +++++|+..|++++...+....+-..........+....+...+...+..+|...
T Consensus 172 ~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~-- 249 (1157)
T PRK11447 172 RLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGD-- 249 (1157)
T ss_pred HHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCch--
Confidence 5555555555555444432 4555555555555443322111111111111122223333444444443332221
Q ss_pred ccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy3224 707 INREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRA 786 (1278)
Q Consensus 707 ~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 786 (1278)
....|...+........++ .......|..+...|++++|+..|+++++.+|++..++..+
T Consensus 250 -----------------~~~~A~~~L~~~~~~~~dp---~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~L 309 (1157)
T PRK11447 250 -----------------SVAAARSQLAEQQKQLADP---AFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGAL 309 (1157)
T ss_pred -----------------HHHHHHHHHHHHHHhccCc---chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 1122333333322221111 11223458888999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCchHHH--HHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH
Q psy3224 787 AYFEKNHGTRESLETLLQKAVAHCPKSEVL--WLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWL 864 (1278)
Q Consensus 787 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~--~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~ 864 (1278)
+.++...|++++|+..|+++++.+|++... |............+..+......|++++|+..|++++..+|.+..+++
T Consensus 310 g~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~ 389 (1157)
T PRK11447 310 GQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVL 389 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999986531 211111111112234456677889999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhh-h--hcCCCcHHHHHHHH
Q psy3224 865 MGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGA-F--QANPNSEEIWLAAV 941 (1278)
Q Consensus 865 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~-l--~~~p~~~~~~~~la 941 (1278)
.+|.++...|++++|+..|+++++..|++..++..++.++. .+++++|+.+++++...... + ....-....+..++
T Consensus 390 ~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 390 GLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999886 45789999888764311000 0 00011134566789
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHH
Q psy3224 942 KLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKA 1020 (1278)
Q Consensus 942 ~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A 1020 (1278)
.++...|++++|+..|+++++..|+ +.+++.++.++...|++++|+..|++++...|+++..++.++.++...+++++|
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~A 548 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAA 548 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999996 689999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 1021 HDTFSQAIKKCPHS----------VPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANT 1090 (1278)
Q Consensus 1021 ~~~~~~al~~~p~~----------~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 1090 (1278)
+..++++....... ......++..+...|++++|+.+++ ..|.++.++..++.++...|++++|+.
T Consensus 549 l~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~ 624 (1157)
T PRK11447 549 LAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARA 624 (1157)
T ss_pred HHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHH
Confidence 99998764332211 1234466888899999999999887 589999999999999999999999999
Q ss_pred HHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhh
Q psy3224 1091 MMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDA 1170 (1278)
Q Consensus 1091 ~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~ 1170 (1278)
.|+++++..|++..++..++.++...|++++|+..|+++.
T Consensus 625 ~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll---------------------------------------- 664 (1157)
T PRK11447 625 AYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLP---------------------------------------- 664 (1157)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh----------------------------------------
Confidence 9999999999999999999999999999999999998762
Q ss_pred hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh------hHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy3224 1171 LKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLG------DAWAYFYKFEIINGTEETQAEVKKRCLA 1240 (1278)
Q Consensus 1171 l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~------d~~~~l~~~~~~~G~~~~A~~~l~ka~~ 1240 (1278)
...|+++.++..+|.++...|++++|+.+|++++...|+.+ .++..++.++...|+.++|...+++++.
T Consensus 665 -~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 665 -ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred -ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 12345566888999999999999999999999999877654 3667789999999999999999999986
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3.6e-38 Score=421.16 Aligned_cols=639 Identities=14% Similarity=0.093 Sum_probs=517.4
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHh----cCCchHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 512 PNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAAR----LQPVDTARAVIAQAVRHIPTSVRIWIKAAD 587 (1278)
Q Consensus 512 P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~----L~~~~~A~~~l~kaL~~~P~s~~lw~~~~~ 587 (1278)
|...+.++..+++....++.+.|+..+.+++...|+++.++...++ .++.++|.+.++++++..|+++.++.....
T Consensus 25 ~~~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~ 104 (1157)
T PRK11447 25 PTAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTT 104 (1157)
T ss_pred CCHHHHHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence 4556678999999999999999999999999999999999966654 467889999999999999999988764433
Q ss_pred chhhHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHH-hcCHHHHHHHHHHH
Q psy3224 588 LETETKAKRRVYRKALEHIPNSVRLWKAAVELEDPEDARILLSRAVECCPTSVEL----WLALAR-LETYENARKVLNKA 662 (1278)
Q Consensus 588 le~~~~~A~~ll~rAle~~P~s~~Lw~al~~l~~~e~A~~~l~kal~~~P~~~~~----w~~la~-l~~~~~A~~~l~~a 662 (1278)
+.......+..+. +-..++..+++++|+..|+++++..|.+..+ |...+. .+++++|+..|+++
T Consensus 105 ~~~~~~~~~~~l~-----------~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~l 173 (1157)
T PRK11447 105 MLLSTPEGRQALQ-----------QARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRL 173 (1157)
T ss_pred HHhcCCchhhHHH-----------HHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHH
Confidence 2221111111121 1234677889999999999999999988653 333332 48999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q psy3224 663 RENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQ 742 (1278)
Q Consensus 663 l~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~ 742 (1278)
++.+|.+..++..+|.++...|++++|...+++++...+.. ......|+.. ....+....+...+...+...++
T Consensus 174 l~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~--~~aa~~~~~~---l~~~~~~~~~~~~l~~~l~~~p~- 247 (1157)
T PRK11447 174 NADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGR--DAAAQLWYGQ---IKDMPVSDASVAALQKYLQVFSD- 247 (1157)
T ss_pred HHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCch--HHHHHHHHHH---HhccCCChhhHHHHHHHHHHCCC-
Confidence 99999999999999999999999999999999987642111 0111222221 11222233334444444333322
Q ss_pred cchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcc
Q psy3224 743 EDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAK 822 (1278)
Q Consensus 743 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~ 822 (1278)
...+..|...+.+.....++........+.++...|++++|+..|+++++.+|.+..
T Consensus 248 ----------------~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~------- 304 (1157)
T PRK11447 248 ----------------GDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSE------- 304 (1157)
T ss_pred ----------------chHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------
Confidence 123445666666655443332233345588889999999999999999999999864
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHH--------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 823 SNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEV--------------LWLMGAKSKWLAGDVPAARGILSLAFQ 888 (1278)
Q Consensus 823 ~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~--------------~~~~la~~~~~~g~~~~A~~~l~~al~ 888 (1278)
++..++.++...|++++|+..|+++++.+|++.. ..+..+.++...|++++|+..|++++.
T Consensus 305 -----a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~ 379 (1157)
T PRK11447 305 -----ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQ 379 (1157)
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777888889999999999999999999997642 123457788899999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q psy3224 889 ANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-- 966 (1278)
Q Consensus 889 ~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-- 966 (1278)
.+|++..++..++.++...|++++|+..|++++ ..+|.+..++..++.++. .+++++|+.+++++....+.
T Consensus 380 ~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL------~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 380 VDNTDSYAVLGLGDVAMARKDYAAAERYYQQAL------RMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 999999999999999999999999999999998 889999999999999885 46789999888765433221
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy3224 967 --------PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLW 1038 (1278)
Q Consensus 967 --------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 1038 (1278)
...+..++.++...|++++|+.+|+++++.+|+++.+++.++.++...|++++|+..|+++++..|.++..+
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~ 532 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQV 532 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 245667888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Q psy3224 1039 IMLANLEERRKMLIKARSVLEKGRLRNPNCA----------ELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAE 1108 (1278)
Q Consensus 1039 ~~la~l~~~~g~~~~A~~~l~kal~~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~ 1108 (1278)
+.++.++...+++++|+.+++++.....+.. ...+..+..+...|++++|+.+++ ..|.++.++..
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~ 608 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPSTRIDLT 608 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHH
Confidence 9999999999999999999987643222111 123566778899999999998876 68999999999
Q ss_pred HHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHH
Q psy3224 1109 AIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLF 1188 (1278)
Q Consensus 1109 ~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~ 1188 (1278)
++.++...|++++|+..|+++ ++..|+++.+++.+|.+|
T Consensus 609 La~~~~~~g~~~~A~~~y~~a-----------------------------------------l~~~P~~~~a~~~la~~~ 647 (1157)
T PRK11447 609 LADWAQQRGDYAAARAAYQRV-----------------------------------------LTREPGNADARLGLIEVD 647 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHH-----------------------------------------HHhCCCCHHHHHHHHHHH
Confidence 999999999999999999876 234566778999999999
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Q psy3224 1189 WCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGE 1247 (1278)
Q Consensus 1189 ~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~ 1247 (1278)
...|++++|+..|+++++..|+++.++..++.++...|+.++|.+++++++...|+++.
T Consensus 648 ~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 648 IAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 99999999999999999999999999999999999999999999999999998887654
No 8
>KOG4626|consensus
Probab=100.00 E-value=2.4e-39 Score=360.15 Aligned_cols=457 Identities=15% Similarity=0.107 Sum_probs=383.9
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHH
Q psy3224 649 LETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTC 728 (1278)
Q Consensus 649 l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A 728 (1278)
-|+|.+|.+..+-.-..+|.+.+....+..++.+..+.+++.+.-..+++..
T Consensus 61 ~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~---------------------------- 112 (966)
T KOG4626|consen 61 GGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN---------------------------- 112 (966)
T ss_pred ccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhcc----------------------------
Confidence 4778888888887777888777777777777777666666655554444432
Q ss_pred HHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 729 QALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVA 808 (1278)
Q Consensus 729 ~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 808 (1278)
+.-.+.+..+|+++...|+++.|+..|+.++++.|+..++|..++.++...|+.+.|..+|..+++
T Consensus 113 --------------~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq 178 (966)
T KOG4626|consen 113 --------------PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ 178 (966)
T ss_pred --------------chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh
Confidence 222567888999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 809 HCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQ 888 (1278)
Q Consensus 809 ~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 888 (1278)
++|.... +....+.+....|...+|..+|.+|+...|....+|..+|.++..+|++..|+..|+++++
T Consensus 179 lnP~l~c------------a~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk 246 (966)
T KOG4626|consen 179 LNPDLYC------------ARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK 246 (966)
T ss_pred cCcchhh------------hhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc
Confidence 8888754 3445566777788888899999999999998888899999998889999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-H
Q psy3224 889 ANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-P 967 (1278)
Q Consensus 889 ~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~ 967 (1278)
++|+..++|+.+|.++...+.+++|+..|.+++ ...|++..++-+++.+|..+|..+-|+..|++++...|+ +
T Consensus 247 ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl------~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~ 320 (966)
T KOG4626|consen 247 LDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL------NLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP 320 (966)
T ss_pred CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH------hcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch
Confidence 999989999999999998888888888888887 778888888888888888888888888888888888887 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~ 1047 (1278)
.++.+++..+...|+..+|..+|.+++..+|+.+++..++|.++..+|.++.|..+|.++++..|....++.++|.+|.+
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq 400 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ 400 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHH
Q psy3224 1048 RKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALK 1127 (1278)
Q Consensus 1048 ~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~ 1127 (1278)
+|++++|+..|+.++.+.|...+++.+++..|...|+...|++.|.+++..+|...+
T Consensus 401 qgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~Ae----------------------- 457 (966)
T KOG4626|consen 401 QGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAE----------------------- 457 (966)
T ss_pred cccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHH-----------------------
Confidence 888888888888888888888888888888888888888888888888888875322
Q ss_pred HhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy3224 1128 KCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKI 1207 (1278)
Q Consensus 1128 k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~ 1207 (1278)
+..+||.+|-..|+...|+..|+.||++
T Consensus 458 ----------------------------------------------------AhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 458 ----------------------------------------------------AHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred ----------------------------------------------------HHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 5677888898999999999999999999
Q ss_pred CCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy3224 1208 DPDLGDAWAYFYKFEIINGTEETQAEVKKRCLA 1240 (1278)
Q Consensus 1208 ~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~ 1240 (1278)
.|++++++.++..++.--.++.+-.+.++++++
T Consensus 486 kPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~s 518 (966)
T KOG4626|consen 486 KPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVS 518 (966)
T ss_pred CCCCchhhhHHHHHHHHHhcccchHHHHHHHHH
Confidence 999999999998887766655554444444444
No 9
>KOG4626|consensus
Probab=100.00 E-value=1.6e-38 Score=353.62 Aligned_cols=447 Identities=17% Similarity=0.127 Sum_probs=419.4
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchH
Q psy3224 747 HTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKK 826 (1278)
Q Consensus 747 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~ 826 (1278)
...+.+|.-.++.|+|.+|.+....+...+|.+.+....+..++.+..+++.....-..+++.+|.-..
T Consensus 49 ~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae----------- 117 (966)
T KOG4626|consen 49 DDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAE----------- 117 (966)
T ss_pred hhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHH-----------
Confidence 357788999999999999999999999999999999999999999999999888888888888887643
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q psy3224 827 SIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESE 906 (1278)
Q Consensus 827 ~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~ 906 (1278)
.+.+++.+++..|+++.|+.+|+.++++.|++.++|..+|.++...|+.+.|...|..+++++|+...+...++.+...
T Consensus 118 -~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka 196 (966)
T KOG4626|consen 118 -AYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKA 196 (966)
T ss_pred -HHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHh
Confidence 5777888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHH
Q psy3224 907 NNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLER 985 (1278)
Q Consensus 907 ~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~ 985 (1278)
.|.+.+|..+|.+++ ...|....+|..+|.++..+|+...|+..|+++++++|+ ..+|+++|.+|...+.++.
T Consensus 197 ~Grl~ea~~cYlkAi------~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAI------ETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred hcccchhHHHHHHHH------hhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 999999999999998 889999999999999999999999999999999999998 6999999999999999999
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 986 ALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRN 1065 (1278)
Q Consensus 986 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~ 1065 (1278)
|+.+|.+++...|++..++-++|.+|..+|..+-|+..|++++...|+.+.++.++|..+...|+..+|..+|.+++.+.
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHh-ccCcchhhhhhhhhh
Q psy3224 1066 PNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKC-EHDPHVLLAVSKLFW 1144 (1278)
Q Consensus 1066 p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~-~~~p~~~~~~~~l~~ 1144 (1278)
|++++...+++.++.+.|.+++|..+|.+++..+|.-......++.++.+.|++++|+..|+.+ .-+|.
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~---------- 420 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT---------- 420 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch----------
Confidence 9999999999999999999999999999999999999999999999999999999999999876 33444
Q ss_pred hhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q psy3224 1145 CENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEII 1224 (1278)
Q Consensus 1145 ~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~ 1224 (1278)
-.+++.++|..|-..|+...|+..|.+|+.++|...+++.+|+.++..
T Consensus 421 --------------------------------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD 468 (966)
T KOG4626|consen 421 --------------------------------FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD 468 (966)
T ss_pred --------------------------------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc
Confidence 345899999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHhCCCCcchhhhhh
Q psy3224 1225 NGTEETQAEVKKRCLAAEPKHGENWCRVA 1253 (1278)
Q Consensus 1225 ~G~~~~A~~~l~ka~~~~P~~~~~w~~~~ 1253 (1278)
.|+..+|...|+.++.+.|+.++.++.+.
T Consensus 469 sGni~~AI~sY~~aLklkPDfpdA~cNll 497 (966)
T KOG4626|consen 469 SGNIPEAIQSYRTALKLKPDFPDAYCNLL 497 (966)
T ss_pred cCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence 99999999999999999999998887764
No 10
>PF06424 PRP1_N: PRP1 splicing factor, N-terminal; InterPro: IPR010491 This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 []. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.; GO: 0000398 nuclear mRNA splicing, via spliceosome, 0005634 nucleus
Probab=100.00 E-value=2.7e-41 Score=315.42 Aligned_cols=133 Identities=65% Similarity=1.087 Sum_probs=118.8
Q ss_pred CCCCCcCCCCCCcccccccccCCCCCCCCCCCcccccccccccccCcccccccccCCCCCcccCCCCCCCCCCCCCCCCc
Q psy3224 239 APLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAAPVKRKKKDEEEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDD 318 (1278)
Q Consensus 239 ~p~~~~~~~~r~~~~~~t~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 318 (1278)
||+|||||+|||||||||++|||++|..+... ..++++..+.+|++ +++.+||+.++||+||
T Consensus 1 pPpgYVaGlGRGAtGFtTrsdiGpar~~~~~~----------------~~~~~~~~~~~~~~--~~~~~lf~~~~yD~dD 62 (133)
T PF06424_consen 1 PPPGYVAGLGRGATGFTTRSDIGPAREGPDDE----------------EDDEEDDDDERFDD--GYNEGLFASGPYDDDD 62 (133)
T ss_pred CCCCcCCCcccCCcCCCCcccCCccccccccc----------------cccccccchhhcCc--ccccccccCCCCccch
Confidence 69999999999999999999999999744311 12334445667776 4566999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCchhhhhhhhhhhccCcCChHhhhcCCccccchhc
Q psy3224 319 EEADMIYEEIDKRMDEKRKDYREKRLREELERYRQERPKIQQQFSDLKRGLVTVSMDEWKNVPEVGDARNR 389 (1278)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~l~~~l~~~~~~~w~~~~~~g~~~~~ 389 (1278)
+|||+||++||+||++|||+++|.++++++++++.++|+|++||+||||+|++||++||+||||+||+|+|
T Consensus 63 ~EAD~Iy~~ID~rmd~Rrk~~re~~~~~e~e~~~~~~pkI~~QFaDLKR~La~VS~eeW~~IPE~GD~t~k 133 (133)
T PF06424_consen 63 EEADRIYESIDRRMDSRRKKRREAREKEEIEKYRKENPKIQQQFADLKRSLATVSEEEWENIPEAGDYTRK 133 (133)
T ss_pred HHHHHHHHHHHHHHHhcccchhhhhhhhHHHhhhccCchHHHHHHHHHHHHccCCHHHHhcCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999965
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2.3e-34 Score=366.09 Aligned_cols=663 Identities=12% Similarity=0.010 Sum_probs=470.6
Q ss_pred cccchHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHhcCCchHHHHHHHHH
Q psy3224 492 GDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARLQPVDTARAVIAQA 571 (1278)
Q Consensus 492 ~~~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~L~~~~~A~~~l~ka 571 (1278)
...|++++|+..|+++++.+|+++.+++.+++++...|++++|+..++++++.+|.+...++..+.+.++++|..+|+++
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~kA~~~ye~l 134 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEVKSVTTVEEL 134 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccChhHHHHHHHH
Confidence 34489999999999999999999999999999999999999999999999999999998888778889999999999999
Q ss_pred HHhCCCCHHHHHHHHHc--------hhhHHHHHHHHHHHHHhCC--CCHHH----HHHHHhcCCHHHHHHHHHHHHHhCC
Q psy3224 572 VRHIPTSVRIWIKAADL--------ETETKAKRRVYRKALEHIP--NSVRL----WKAAVELEDPEDARILLSRAVECCP 637 (1278)
Q Consensus 572 L~~~P~s~~lw~~~~~l--------e~~~~~A~~ll~rAle~~P--~s~~L----w~al~~l~~~e~A~~~l~kal~~~P 637 (1278)
++..|.+..+....+.+ +...+.|...+. .-...| ....+ ...|..++++++|+..|.++++..|
T Consensus 135 ~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p 213 (987)
T PRK09782 135 LAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT 213 (987)
T ss_pred HHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC
Confidence 99999998877766665 445555666665 222223 23222 2346778888888888888888888
Q ss_pred CCHHHHHHHH----H-hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHH
Q psy3224 638 TSVELWLALA----R-LETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHW 712 (1278)
Q Consensus 638 ~~~~~w~~la----~-l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~ 712 (1278)
.+...+..++ + +++ +.+..++...+ ..++.+|..++..+.+.|+.++|..+++..-...+.. +....|
T Consensus 214 l~~~~~~~L~~ay~q~l~~-~~a~al~~~~l---k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~---~~~~~~ 286 (987)
T PRK09782 214 LSAAERRQWFDVLLAGQLD-DRLLALQSQGI---FTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD---AQEKSW 286 (987)
T ss_pred CCHHHHHHHHHHHHHhhCH-HHHHHHhchhc---ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC---CccHHH
Confidence 8877665443 3 344 66666655422 2678888888888888888888888887754433221 233455
Q ss_pred HHHHHHHHHcCCh-hHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy3224 713 FKEAIEAEKAGSV-HTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEK 791 (1278)
Q Consensus 713 l~~A~~~~~~g~~-~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 791 (1278)
+-.+. +.+.. ..|..-+.. ... ++.....+..+..+..++.++.+..+ +...|.+... ........
T Consensus 287 ~~~l~---r~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~r~~~~~ 353 (987)
T PRK09782 287 LYLLS---KYSANPVQALANYTV--QFA---DNRQYVVGATLPVLLKEGQYDAAQKL----LATLPANEML-EERYAVSV 353 (987)
T ss_pred HHHHH---hccCchhhhccchhh--hhH---HHHHHHHHHHHHHHHhccHHHHHHHH----hcCCCcchHH-HHHHhhcc
Confidence 43322 11211 111111111 000 11223444556666666666644433 3344554431 11111222
Q ss_pred HcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHH
Q psy3224 792 NHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPK---SEVLWLMGAK 868 (1278)
Q Consensus 792 ~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~---~~~~~~~la~ 868 (1278)
..+...++...+....+..|.+.. .......+..+.|++++|..+|++++...++ +..+...++.
T Consensus 354 ~~~~~~~~~~~~~~~y~~~~~~~~------------~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~ 421 (987)
T PRK09782 354 ATRNKAEALRLARLLYQQEPANLT------------RLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLAS 421 (987)
T ss_pred ccCchhHHHHHHHHHHhcCCCCHH------------HHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHH
Confidence 334555555555555555454432 3444455555666666666666666654221 1223335555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHH---HHHHHHHHHHhhhhhhcCCC--cHHHHHHHHHH
Q psy3224 869 SKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYER---ARRLLAKARAQAGAFQANPN--SEEIWLAAVKL 943 (1278)
Q Consensus 869 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~---A~~~l~~al~~~~~l~~~p~--~~~~~~~la~~ 943 (1278)
+|...+.......+..-+-....... ..-.|++.. +...+.+++ ...|. +..+|..++.+
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~al------~~~p~~~~~~a~~~LG~~ 486 (987)
T PRK09782 422 LLESHPYLATPAKVAILSKPLPLAEQ---------RQWQSQLPGIADNCPAIVRLL------GDMSPSYDAAAWNRLAKC 486 (987)
T ss_pred HHHhCCcccchHHHHHhccccccchh---------HHHHhhhhhhhhhHHHHHHhc------ccCCCCCCHHHHHHHHHH
Confidence 66555442222111111000000000 011122222 233333333 56677 89999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 944 ESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDT 1023 (1278)
Q Consensus 944 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 1023 (1278)
+.. +++.+|+..|.+++...|+....+.++.++...|++++|+..|++++...|. ...++.+|.++...|++++|..+
T Consensus 487 l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~ 564 (987)
T PRK09782 487 YRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRW 564 (987)
T ss_pred HHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHH
Confidence 877 7888999999999999988666666777778899999999999998777665 45578889999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Q psy3224 1024 FSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAG 1103 (1278)
Q Consensus 1024 ~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~ 1103 (1278)
|.+++..+|.+...+..++......|++++|+..|++++..+|+ +..|..++.++.+.|++++|+..|.+++...|+++
T Consensus 565 l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~ 643 (987)
T PRK09782 565 LQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS 643 (987)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999988777777766666779999999999999999996 88899999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHH
Q psy3224 1104 ILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLA 1183 (1278)
Q Consensus 1104 ~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~ 1183 (1278)
.++..++.++...|++++|+..|+++ ++.+|+++.++++
T Consensus 644 ~a~~nLG~aL~~~G~~eeAi~~l~~A-----------------------------------------L~l~P~~~~a~~n 682 (987)
T PRK09782 644 NYQAALGYALWDSGDIAQSREMLERA-----------------------------------------HKGLPDDPALIRQ 682 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHH-----------------------------------------HHhCCCCHHHHHH
Confidence 99999999999999999999988865 3345667889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc
Q psy3224 1184 VSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHG 1246 (1278)
Q Consensus 1184 lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~ 1246 (1278)
+|.++...|+++.|+.+|+++++++|++..+...++.++....++..+.+.+++....+|..-
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 999999999999999999999999999999999999999999999999999999999888654
No 12
>KOG2002|consensus
Probab=100.00 E-value=4.1e-34 Score=336.64 Aligned_cols=653 Identities=15% Similarity=0.098 Sum_probs=500.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------cCCCHHHHHHH---Hhc--------CC------chHHHHHHHHH
Q psy3224 515 PPAWIASARLEEVTGKVQAARNLIMKGCEE------NQTSEDLWLEA---ARL--------QP------VDTARAVIAQA 571 (1278)
Q Consensus 515 ~~~wl~~arl~~~~g~~~~A~~~l~~al~~------~P~s~~lwl~~---a~L--------~~------~~~A~~~l~ka 571 (1278)
.+.|+..|.-|+..|+.++.+.+++.++-. .+++...|... +-+ .. ...|...|..+
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 467777777777778888888877777722 13333333111 100 00 12244455555
Q ss_pred HHhCCCCHHHHHH-----HHHchhhHHHHHHHHHHHHHhCCCCHHHHH--HHHhc--CCHHHHHHHHHHHHHhCCCC---
Q psy3224 572 VRHIPTSVRIWIK-----AADLETETKAKRRVYRKALEHIPNSVRLWK--AAVEL--EDPEDARILLSRAVECCPTS--- 639 (1278)
Q Consensus 572 L~~~P~s~~lw~~-----~~~le~~~~~A~~ll~rAle~~P~s~~Lw~--al~~l--~~~e~A~~~l~kal~~~P~~--- 639 (1278)
-..+-.....|.. +.....+.+.|...|...+...|.++-..+ +-+.+ ++|-.|+.+|.+++..+|..
T Consensus 121 ~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD 200 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKAD 200 (1018)
T ss_pred HHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC
Confidence 4444332222211 111111346777778888888887774333 33333 37888888888888777642
Q ss_pred H--HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhhhhCCccccHHHHHH
Q psy3224 640 V--ELWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNA---MVDKIIDRALSSLSANGVEINREHWFK 714 (1278)
Q Consensus 640 ~--~~w~~la~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~---~A~~il~~al~~~~~~~~~~~~~~~l~ 714 (1278)
+ .+|..+.+++..+.|+..|.++++++|.+..++..++.+.....+.+ .+...+.++....+.+ +.....
T Consensus 201 ~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~n-----P~~l~~ 275 (1018)
T KOG2002|consen 201 VRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNEN-----PVALNH 275 (1018)
T ss_pred ccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCC-----cHHHHH
Confidence 2 34666677788888888888888888888888888887777766543 4555555555443333 345666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Q psy3224 715 EAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSK-KSIWLRAAYFEKNH 793 (1278)
Q Consensus 715 ~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~ 793 (1278)
.|..+.-.|++..+..+...++............++.+|+.+..+|+|++|..+|.++++.+|++ .-.++.++.++...
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~ 355 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKR 355 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHh
Confidence 77777777888888888877777665555566789999999999999999999999999999998 67788999999999
Q ss_pred CCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy3224 794 GTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEK----NHGTRESLETLLQKAVAHCPKSEVLWLMGAKS 869 (1278)
Q Consensus 794 g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~----~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~ 869 (1278)
|+++.+..+|++.++..|++.....+ ++.++. .....+.|..++.++++..|.+..+|+.++++
T Consensus 356 ~dle~s~~~fEkv~k~~p~~~etm~i------------LG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 356 GDLEESKFCFEKVLKQLPNNYETMKI------------LGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred chHHHHHHHHHHHHHhCcchHHHHHH------------HHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 99999999999999999999864332 222222 22356789999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCC-----CcHHHHHH
Q psy3224 870 KWLAGDVPAARGILSLAFQAN-----PNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANP-----NSEEIWLA 939 (1278)
Q Consensus 870 ~~~~g~~~~A~~~l~~al~~~-----p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p-----~~~~~~~~ 939 (1278)
+... +...++.+|.+|+... +--+++...+|.++...|++.+|...|..+...+... .++ .+...-++
T Consensus 424 ~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~-~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 424 LEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV-ANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh-cCccccccchhHHHHH
Confidence 8654 5555599999888432 2247889999999999999999999999998653211 111 22445889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHH
Q psy3224 940 AVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLD 1018 (1278)
Q Consensus 940 la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 1018 (1278)
+++++...++++.|.+.|..++..+|. ...++.++.+....++..+|..++..++..+..++.+|..+|.++.....+.
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 999999999999999999999999998 4888888888888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCC--CCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy3224 1019 KAHDTFSQAIKKCP--HSVPLWIMLANLEER------------RKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGL 1084 (1278)
Q Consensus 1019 ~A~~~~~~al~~~p--~~~~~~~~la~l~~~------------~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~ 1084 (1278)
.|..-|...++... .++...+.||.++.+ .+.+++|++.|.+++..+|.|..+-...|.++...|+
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccC
Confidence 99998888876543 356677788887664 4667899999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCcccccccc
Q psy3224 1085 KDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVK 1164 (1278)
Q Consensus 1085 ~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~ 1164 (1278)
+.+|..+|.++.+.-.+...+|.+++.++...|+|..|++.|+.+...-.
T Consensus 662 ~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~------------------------------ 711 (1018)
T KOG2002|consen 662 FSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY------------------------------ 711 (1018)
T ss_pred chHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc------------------------------
Confidence 99999999999988877889999999999999999999999999832211
Q ss_pred chhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHh
Q psy3224 1165 TKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIIN 1225 (1278)
Q Consensus 1165 ~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~ 1225 (1278)
..+++.++..||.+++..|.+.+|..++.+|+...|.++.+..+++.+..+.
T Consensus 712 ---------~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl 763 (1018)
T KOG2002|consen 712 ---------KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL 763 (1018)
T ss_pred ---------ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence 1234669999999999999999999999999999999999888887776554
No 13
>KOG2002|consensus
Probab=100.00 E-value=2.2e-32 Score=322.18 Aligned_cols=625 Identities=14% Similarity=0.122 Sum_probs=429.4
Q ss_pred hhhHhhhhccCCCcccccchHHHHHHHHHHHHH------hCCCChHHHHHH--HHHHH-----------hcCCHHHHHHH
Q psy3224 477 KGYLTDLQSMIPTYGGDINDIKKARLLLKSVRE------TNPNHPPAWIAS--ARLEE-----------VTGKVQAARNL 537 (1278)
Q Consensus 477 ~g~ia~a~~~l~~~~~~~g~~~~A~~~l~~~l~------~~P~~~~~wl~~--arl~~-----------~~g~~~~A~~~ 537 (1278)
..|+..+.. +...|..++.+.+++.++- .+++....|... |.-+. ...-+..|..+
T Consensus 42 e~wi~~Ale-----Yy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~ 116 (1018)
T KOG2002|consen 42 EAWIEIALE-----YYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLL 116 (1018)
T ss_pred hHHHHHHHH-----HHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 468887766 8899999999999999982 134433333322 21111 11224567788
Q ss_pred HHHHHHhcCCCHHHHHHHHh----cC--CchHHHHHHHHHHHhCCCCHHHHHHHHHchh---hHHHHHHHHHHHHHhCCC
Q psy3224 538 IMKGCEENQTSEDLWLEAAR----LQ--PVDTARAVIAQAVRHIPTSVRIWIKAADLET---ETKAKRRVYRKALEHIPN 608 (1278)
Q Consensus 538 l~~al~~~P~s~~lwl~~a~----L~--~~~~A~~~l~kaL~~~P~s~~lw~~~~~le~---~~~~A~~ll~rAle~~P~ 608 (1278)
|..+.+.+-.....|+.... .. +.+.|-+.|...+...|+++-..+.-+.+.. ++..|..+|.+++..+|.
T Consensus 117 ~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~ 196 (1018)
T KOG2002|consen 117 FDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPA 196 (1018)
T ss_pred hhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcc
Confidence 88888887666655543221 11 2468999999999999999866665555443 677899999999999987
Q ss_pred CH-----HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHh-------cCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy3224 609 SV-----RLWKAAVELEDPEDARILLSRAVECCPTSVELWLALARL-------ETYENARKVLNKARENIPTDRQIWTTA 676 (1278)
Q Consensus 609 s~-----~Lw~al~~l~~~e~A~~~l~kal~~~P~~~~~w~~la~l-------~~~~~A~~~l~~al~~~p~~~~~~~~l 676 (1278)
.. -.|..+++++..+.|+..|.+|++++|+++.+.+.++-+ ..+..+...+.++...+|.+|.+...+
T Consensus 197 ~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~L 276 (1018)
T KOG2002|consen 197 CKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHL 276 (1018)
T ss_pred cCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHH
Confidence 64 468889999999999999999999999999998877743 468899999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHH
Q psy3224 677 AKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESC 756 (1278)
Q Consensus 677 a~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~ 756 (1278)
+..+...|++..+..+...++...... ....+.++..++.+...|+++.|...|..++...++. ..-.++.+|+.+
T Consensus 277 An~fyfK~dy~~v~~la~~ai~~t~~~--~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~ 352 (1018)
T KOG2002|consen 277 ANHFYFKKDYERVWHLAEHAIKNTENK--SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMY 352 (1018)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC--ccccccchhHHH
Confidence 999999999999999999998763221 2335578889999999999999999999999876554 244678899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHH
Q psy3224 757 ANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHG----TRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRA 832 (1278)
Q Consensus 757 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g----~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~ 832 (1278)
+..|+++.|..+|+++++.+|++.+....+|.+|...+ ..+.|..++.++++..|.+..+|+ ..
T Consensus 353 i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l------------~l 420 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWL------------EL 420 (1018)
T ss_pred HHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHH------------HH
Confidence 99999999999999999999999999999999999886 568899999999999999977554 34
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-----CHHHH
Q psy3224 833 AYFEKNHGTRESLETLLQKAVAH-----CPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQAN-----PN-----SEEIW 897 (1278)
Q Consensus 833 a~l~~~~g~~~~A~~~~~~al~~-----~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-----p~-----~~~~~ 897 (1278)
+.++... +.-.++.+|..|+.. .+--++....+|..++..|++.+|...|..++... ++ +...-
T Consensus 421 aql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 421 AQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 4443332 222235555555431 12234555566666666666666666666665541 11 12245
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Q psy3224 898 LAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAP-TPRVMIQSAKL 976 (1278)
Q Consensus 898 ~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~la~~ 976 (1278)
+.++.++...+++..|...|..++ ..+|.....+..++.+....++..+|...+..++..+. ++.+|..+|.+
T Consensus 500 YNlarl~E~l~~~~~A~e~Yk~Il------kehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~ 573 (1018)
T KOG2002|consen 500 YNLARLLEELHDTEVAEEMYKSIL------KEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNL 573 (1018)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHH------HHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHH
Confidence 566666666666666666666665 55666666666666555555666666666666666543 35666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy3224 977 EWCLDNLERALQLLDEAIKVFP--DFAKLWMMKGQIEEQ------------KNLLDKAHDTFSQAIKKCPHSVPLWIMLA 1042 (1278)
Q Consensus 977 ~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~------------~g~~~~A~~~~~~al~~~p~~~~~~~~la 1042 (1278)
+.....+..|..-|+..++... .++...+.+|.++++ .+.+++|+++|.++|..+|.|..+-..+|
T Consensus 574 ~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIg 653 (1018)
T KOG2002|consen 574 HLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIG 653 (1018)
T ss_pred HHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchh
Confidence 6666566666555555544322 234445555554432 12355666666666666666665555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHhccCCCCChh
Q psy3224 1043 NLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECP--NAGILWAEAIFLEPRPQRKT 1120 (1278)
Q Consensus 1043 ~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P--~~~~~~~~~~~~~~~~~~~~ 1120 (1278)
.++...|++.+|+.+|.++.+...+++++|++++.+|..+|+|-.|+++|+.|++.+- ++..+...++..+...+++.
T Consensus 654 iVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 654 IVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred hhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 6666666666666666666655555556666666666666666666666666665432 34455555666666666666
Q ss_pred HHHHHHHHh
Q psy3224 1121 KSVDALKKC 1129 (1278)
Q Consensus 1121 ~A~~~l~k~ 1129 (1278)
+|...+.++
T Consensus 734 eak~~ll~a 742 (1018)
T KOG2002|consen 734 EAKEALLKA 742 (1018)
T ss_pred HHHHHHHHH
Confidence 655555544
No 14
>KOG1915|consensus
Probab=100.00 E-value=2.6e-31 Score=288.66 Aligned_cols=470 Identities=24% Similarity=0.348 Sum_probs=399.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHchh---hHHHHHHHHHHHHHhCCCCHHHHHHHHhcC----CHHHHHHHHHHHHHhC
Q psy3224 564 ARAVIAQAVRHIPTSVRIWIKAADLET---ETKAKRRVYRKALEHIPNSVRLWKAAVELE----DPEDARILLSRAVECC 636 (1278)
Q Consensus 564 A~~~l~kaL~~~P~s~~lw~~~~~le~---~~~~A~~ll~rAle~~P~s~~Lw~al~~l~----~~e~A~~~l~kal~~~ 636 (1278)
.++.|+-.|..+.-+...|..++.++. +...|+.+|++||+.+..+..||+.|+.++ +...|+.++++|+...
T Consensus 58 kRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l 137 (677)
T KOG1915|consen 58 KRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL 137 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence 456888888888888999999999887 567899999999999999999999999877 7889999999999999
Q ss_pred CCCHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHH
Q psy3224 637 PTSVELWLALAR----LETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHW 712 (1278)
Q Consensus 637 P~~~~~w~~la~----l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~ 712 (1278)
|.-..+|..|.. +|+...|+++|++.+...| +..+|.....+..+.+..+.|..||++.+-. ++....|
T Consensus 138 PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYerfV~~------HP~v~~w 210 (677)
T KOG1915|consen 138 PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYERFVLV------HPKVSNW 210 (677)
T ss_pred chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHHHHhee------cccHHHH
Confidence 999999988874 6899999999999999999 7899999999999999999999999999854 5667899
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q psy3224 713 FKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSK--KSIWLRAAYFE 790 (1278)
Q Consensus 713 l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~--~~~~~~la~~~ 790 (1278)
+..|....+.|+...|+.+|..++....++.....+++..|.+...+..++.|+-+|+-++..-|.+ ..++..+..+.
T Consensus 211 ikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 211 IKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFE 290 (677)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence 9999999999999999999999999777666677889999999999999999999999999999998 67888888899
Q ss_pred HHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy3224 791 KNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSK 870 (1278)
Q Consensus 791 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 870 (1278)
.+.|+.......+-. .-.--|+..++.+|.+.+.|+.+..+.
T Consensus 291 KqfGd~~gIEd~Iv~--------------------------------------KRk~qYE~~v~~np~nYDsWfdylrL~ 332 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVG--------------------------------------KRKFQYEKEVSKNPYNYDSWFDYLRLE 332 (677)
T ss_pred HHhcchhhhHHHHhh--------------------------------------hhhhHHHHHHHhCCCCchHHHHHHHHH
Confidence 999987663322111 012346888999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHH-HHHc
Q psy3224 871 WLAGDVPAARGILSLAFQANPNS--EEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKL-ESEN 947 (1278)
Q Consensus 871 ~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~-~~~~ 947 (1278)
...|+.+.-+++|++|+...|.- -..|..++.+ |++++.. ....
T Consensus 333 e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYL---------------------------------WinYalyeEle~ 379 (677)
T KOG1915|consen 333 ESVGDKDRIRETYERAIANVPPASEKRYWRRYIYL---------------------------------WINYALYEELEA 379 (677)
T ss_pred HhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHH---------------------------------HHHHHHHHHHHh
Confidence 99999999999999999988752 2234443333 3333322 2366
Q ss_pred CCHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 948 NEYERARRLLAKARASAPT-----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHD 1022 (1278)
Q Consensus 948 g~~~~A~~~l~~al~~~p~-----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 1022 (1278)
.+.+.++.+|+.++.+-|. +.+|+.+|.+..++.+...|+.++-.++..+|. ..++-.+..+..+.++++.++.
T Consensus 380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-DKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHhhHHHHHH
Confidence 7888999999999998886 689999999999999999999999999999998 6777788888899999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q psy3224 1023 TFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNP-NCA-ELWLAAIRVEIRAGLKDIANTMMAKALQECP 1100 (1278)
Q Consensus 1023 ~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p-~~~-~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P 1100 (1278)
+|++.++..|.+..+|..+|.+...+|+.+.|+.+|+-|+.... +-| .+|-.++.+....|.++.|..+|++.|+..+
T Consensus 459 LYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998887654 333 4688888899999999999999999999887
Q ss_pred CcHHHHHHHHhcc
Q psy3224 1101 NAGILWAEAIFLE 1113 (1278)
Q Consensus 1101 ~~~~~~~~~~~~~ 1113 (1278)
+.. +|...+.+.
T Consensus 539 h~k-vWisFA~fe 550 (677)
T KOG1915|consen 539 HVK-VWISFAKFE 550 (677)
T ss_pred cch-HHHhHHHHh
Confidence 766 888766654
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=4.8e-31 Score=335.82 Aligned_cols=670 Identities=12% Similarity=0.024 Sum_probs=475.2
Q ss_pred HHhHHHHHhHhhhhhhhccCCCcCCCcCChhhhHhhhhccCCCcccccchHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy3224 447 RKMGQARNTLMNVKLNQISDSVVGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEE 526 (1278)
Q Consensus 447 ~di~kar~~l~~~~l~~~~~sv~~~~~~~~~g~ia~a~~~l~~~~~~~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~ 526 (1278)
|+..+|...|.. ++..+|.++..+...++. +...|++++|+..++++++.+|.|...+..++.+
T Consensus 58 Gd~~~A~~~l~~---------Al~~dP~n~~~~~~LA~~-----yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i-- 121 (987)
T PRK09782 58 NDEATAIREFEY---------IHQQVPDNIPLTLYLAEA-----YRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI-- 121 (987)
T ss_pred CCHHHHHHHHHH---------HHHhCCCCHHHHHHHHHH-----HHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh--
Confidence 466677777743 667789887777665555 8889999999999999999999999888888777
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCHHHHHHHHh---------cCCchHHHHHHH-HHHHhCCCCHHHHHHHHHchh---hHH
Q psy3224 527 VTGKVQAARNLIMKGCEENQTSEDLWLEAAR---------LQPVDTARAVIA-QAVRHIPTSVRIWIKAADLET---ETK 593 (1278)
Q Consensus 527 ~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~---------L~~~~~A~~~l~-kaL~~~P~s~~lw~~~~~le~---~~~ 593 (1278)
+++.+|..+++++++..|.+.++.+..+. +.+.+.|...+. +.+...|+...+......++. +.+
T Consensus 122 --~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~ 199 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWS 199 (987)
T ss_pred --ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHH
Confidence 78999999999999999999988855544 335566666665 222222334444444344443 567
Q ss_pred HHHHHHHHHHHhCCCCHHHHH----HHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHH----HhcCHHHHHHHHHHHHH
Q psy3224 594 AKRRVYRKALEHIPNSVRLWK----AAVE-LEDPEDARILLSRAVECCPTSVELWLALA----RLETYENARKVLNKARE 664 (1278)
Q Consensus 594 ~A~~ll~rAle~~P~s~~Lw~----al~~-l~~~e~A~~~l~kal~~~P~~~~~w~~la----~l~~~~~A~~~l~~al~ 664 (1278)
.+..++.+.++..|.+.+.+. +|.. +++ +.+..++...+ ..++.+|..++ +.|+.+.|...+...-.
T Consensus 200 ~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l---k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 200 QADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGI---FTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc---ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 799999999999999986443 4555 455 77887766433 36778887655 56999999988887544
Q ss_pred hCCCC--HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q psy3224 665 NIPTD--RQIWTTAAKLEEAHGNN-AMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVE 741 (1278)
Q Consensus 665 ~~p~~--~~~~~~la~~~~~~g~~-~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~ 741 (1278)
..+.+ ...|+... -+.+.. ..+..-+.+ ... .......+..+..+.+.+.+..++.+ +...+.
T Consensus 276 ~~~~~~~~~~~~~~l---~r~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 341 (987)
T PRK09782 276 LFTTDAQEKSWLYLL---SKYSANPVQALANYTV--QFA-----DNRQYVVGATLPVLLKEGQYDAAQKL----LATLPA 341 (987)
T ss_pred cccCCCccHHHHHHH---HhccCchhhhccchhh--hhH-----HHHHHHHHHHHHHHHhccHHHHHHHH----hcCCCc
Confidence 43332 23444432 222222 223222222 110 11234556668888888988866655 233222
Q ss_pred ccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhc
Q psy3224 742 QEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGA 821 (1278)
Q Consensus 742 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~ 821 (1278)
.+ ............+.+.+|...+....+..|.+......++....+.|+..+|..+|+++....++...
T Consensus 342 ~~----~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 411 (987)
T PRK09782 342 NE----MLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARL------ 411 (987)
T ss_pred ch----HHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCccccc------
Confidence 21 21111122334588899999999999999999999999999999999999999999999986332210
Q ss_pred ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC--CH
Q psy3224 822 KSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCP--KSEVLWLMGAKSKWLAGDV---PAARGILSLAFQANPN--SE 894 (1278)
Q Consensus 822 ~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~---~~A~~~l~~al~~~p~--~~ 894 (1278)
+..+....+.++...+..... .+++..-| .... -..-.|+. ..+...+.+++...|. +.
T Consensus 412 ---~~~l~~~l~~~~~~~~~~~~~----~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~ 477 (987)
T PRK09782 412 ---SQTLMARLASLLESHPYLATP----AKVAILSKPLPLAE-------QRQWQSQLPGIADNCPAIVRLLGDMSPSYDA 477 (987)
T ss_pred ---CHHHHHHHHHHHHhCCcccch----HHHHHhccccccch-------hHHHHhhhhhhhhhHHHHHHhcccCCCCCCH
Confidence 011222555555544431111 11111111 0000 01123333 3345555555666666 78
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHH
Q psy3224 895 EIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSA 974 (1278)
Q Consensus 895 ~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la 974 (1278)
.+|..++.++.. +++.+|+..+.+++ ...|.+. ....++.++...|++++|+..|+++....|.+..++.++
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al------~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la 549 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAE------QRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAA 549 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHH------HhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 888888888876 78888888888887 6667654 355667777788889999998888877777767778888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy3224 975 KLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKA 1054 (1278)
Q Consensus 975 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A 1054 (1278)
.++...|++++|..+|+++++..|.+..++..++......|++++|+..|+++++.+|+ ..++..+|.++.+.|++++|
T Consensus 550 ~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA 628 (987)
T PRK09782 550 NTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAA 628 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHH
Confidence 88888889999999999888888888777777776667778999999999999988885 88888888888889999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcc
Q psy3224 1055 RSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPH 1134 (1278)
Q Consensus 1055 ~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~ 1134 (1278)
+.+|++++.++|+++.++..++.++...|++++|+.+|.++++..|+++.++..++.++...|++++|+..|+++.
T Consensus 629 ~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al---- 704 (987)
T PRK09782 629 VSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI---- 704 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH----
Confidence 9999999999999888888888888888999999999999999999888888888888888889888888888761
Q ss_pred hhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhH
Q psy3224 1135 VLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDA 1214 (1278)
Q Consensus 1135 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~ 1214 (1278)
+..|++..+....|++.....++..|.+.+.++..++|... +
T Consensus 705 -------------------------------------~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a 746 (987)
T PRK09782 705 -------------------------------------DDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-I 746 (987)
T ss_pred -------------------------------------hcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-h
Confidence 22344555888889999888899999999999998888765 4
Q ss_pred HHHHHHHHHHhCC
Q psy3224 1215 WAYFYKFEIINGT 1227 (1278)
Q Consensus 1215 ~~~l~~~~~~~G~ 1227 (1278)
-...+.++...++
T Consensus 747 ~~~~g~~~~~~~~ 759 (987)
T PRK09782 747 GLRSGAMSTANNN 759 (987)
T ss_pred ccccchHhhhccc
Confidence 4444444444433
No 16
>KOG1915|consensus
Probab=100.00 E-value=4.2e-30 Score=279.37 Aligned_cols=463 Identities=21% Similarity=0.359 Sum_probs=363.8
Q ss_pred chHH-HHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHhcC----CchHHHHHHH
Q psy3224 495 NDIK-KARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARLQ----PVDTARAVIA 569 (1278)
Q Consensus 495 g~~~-~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~L~----~~~~A~~~l~ 569 (1278)
.+|+ .-|+-|+..++.+--+...|+..|.....++++..|+.++++|+..+..+..+|+.++.++ ....|+.+++
T Consensus 52 ~eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~d 131 (677)
T KOG1915|consen 52 SEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWD 131 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHH
Confidence 3443 4678899999999999999999999999999999999999999999999999999998865 4567889999
Q ss_pred HHHHhCCCCHHHHHHHHHchh---hHHHHHHHHHHHHHhCCCCHHHHHHHHhcC----CHHHHHHHHHHHHHhCCCCHHH
Q psy3224 570 QAVRHIPTSVRIWIKAADLET---ETKAKRRVYRKALEHIPNSVRLWKAAVELE----DPEDARILLSRAVECCPTSVEL 642 (1278)
Q Consensus 570 kaL~~~P~s~~lw~~~~~le~---~~~~A~~ll~rAle~~P~s~~Lw~al~~l~----~~e~A~~~l~kal~~~P~~~~~ 642 (1278)
+|+...|.-..+|.+++.+++ +...|+.+|++.+++.|. ...|+.+++++ ..+.|+.+|++.+-.+|+ +..
T Consensus 132 RAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~ 209 (677)
T KOG1915|consen 132 RAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSN 209 (677)
T ss_pred HHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHH
Confidence 999999998899999888776 556677778877777775 36777776665 556666666666666654 355
Q ss_pred HHHHHHh----cCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHH
Q psy3224 643 WLALARL----ETYENARKVLNKARENIPTDR---QIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKE 715 (1278)
Q Consensus 643 w~~la~l----~~~~~A~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~ 715 (1278)
|+.++++ |+...|+.+|++|+....++. .+....|.+.+.+..++.|..+|+-++...|.+.
T Consensus 210 wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~r----------- 278 (677)
T KOG1915|consen 210 WIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGR----------- 278 (677)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc-----------
Confidence 6666654 456666666666666554432 3455556666666666666666666666555431
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCH---H-----HHHHHHHHHHHhCCCCHHHHHHHH
Q psy3224 716 AIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAY---E-----CARAIYAQALATFPSKKSIWLRAA 787 (1278)
Q Consensus 716 A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~---~-----~A~~~~~~al~~~P~~~~~~~~la 787 (1278)
| ..++-.+..+..+-|+. + +-.--|+..+..+|.|.+.|..+.
T Consensus 279 ------------a-----------------eeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdyl 329 (677)
T KOG1915|consen 279 ------------A-----------------EELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYL 329 (677)
T ss_pred ------------H-----------------HHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHH
Confidence 1 22333333333333432 2 223458899999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCchHH--HHHhhcccchHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCC----cH
Q psy3224 788 YFEKNHGTRESLETLLQKAVAHCPKSEV--LWLMGAKSNKKSIWLRAAYFEK-NHGTRESLETLLQKAVAHCPK----SE 860 (1278)
Q Consensus 788 ~~~~~~g~~~~A~~~l~~al~~~p~~~~--~~~~~~~~~~~~~~l~~a~l~~-~~g~~~~A~~~~~~al~~~P~----~~ 860 (1278)
.+....|+.+...+.|++|+...|.... .|-- ...+|++++.++. ...+.+.+.++|+.++++-|+ ..
T Consensus 330 rL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~R-----YIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFa 404 (677)
T KOG1915|consen 330 RLEESVGDKDRIRETYERAIANVPPASEKRYWRR-----YIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFA 404 (677)
T ss_pred HHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHH-----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHH
Confidence 9999999999999999999999887543 2221 1346888876544 578999999999999999885 46
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHH
Q psy3224 861 VLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAA 940 (1278)
Q Consensus 861 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~l 940 (1278)
.+|+++|+...++.++..|++++-.++..||. ..++..++.++.++++++.++.+|++.+ .-.|.+..+|..+
T Consensus 405 KiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-~KlFk~YIelElqL~efDRcRkLYEkfl------e~~Pe~c~~W~ky 477 (677)
T KOG1915|consen 405 KIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-DKLFKGYIELELQLREFDRCRKLYEKFL------EFSPENCYAWSKY 477 (677)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHhhHHHHHHHHHHHH------hcChHhhHHHHHH
Confidence 89999999999999999999999999999996 7889999999999999999999999998 8899999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy3224 941 VKLESENNEYERARRLLAKARASAPT---PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEE 1012 (1278)
Q Consensus 941 a~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 1012 (1278)
|.+....|+.+.|+.+|+-|++...- ..+|..+..+....|.+++|+.+|++.|...+... +|+..+.+..
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~fe~ 551 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKFEA 551 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHHhc
Confidence 99999999999999999999887532 37888888888889999999999999998888754 8888887664
No 17
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=5.4e-28 Score=316.41 Aligned_cols=654 Identities=13% Similarity=0.069 Sum_probs=447.2
Q ss_pred ccccchHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCH-HHH----HHHHhcCCchHH
Q psy3224 491 GGDINDIKKARLLLKSVRETN-PNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSE-DLW----LEAARLQPVDTA 564 (1278)
Q Consensus 491 ~~~~g~~~~A~~~l~~~l~~~-P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~-~lw----l~~a~L~~~~~A 564 (1278)
+.+.|++.+|..+|.+..+.. |.+...+..+.+.....+.++.|..++..+++..+... .++ -.+++.++.+.|
T Consensus 61 l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A 140 (857)
T PLN03077 61 LCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHA 140 (857)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHH
Confidence 556689999999999988753 45667777888888888889999999998887765421 111 122344555556
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHchhhHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHH
Q psy3224 565 RAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLWKAAVELEDPEDARILLSRAVEC--CPTSVEL 642 (1278)
Q Consensus 565 ~~~l~kaL~~~P~s~~lw~~~~~le~~~~~A~~ll~rAle~~P~s~~Lw~al~~l~~~e~A~~~l~kal~~--~P~~~~~ 642 (1278)
.++|++..+ .++..|..++ .+|.+.+++++|..+|.+++.. .|+....
T Consensus 141 ~~~f~~m~~---~d~~~~n~li---------------------------~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~ 190 (857)
T PLN03077 141 WYVFGKMPE---RDLFSWNVLV---------------------------GGYAKAGYFDEALCLYHRMLWAGVRPDVYTF 190 (857)
T ss_pred HHHHhcCCC---CCeeEHHHHH---------------------------HHHHhCCCHHHHHHHHHHHHHcCCCCChhHH
Confidence 666555532 1222333333 2344444555555555554432 2322211
Q ss_pred ---HHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHH
Q psy3224 643 ---WLALARLETYENARKVLNKARENI-PTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIE 718 (1278)
Q Consensus 643 ---w~~la~l~~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~ 718 (1278)
...++..++...+..++..+++.. +.+...+..+...|.+.|+++.|..+|+++.. .+...|......
T Consensus 191 ~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--------~d~~s~n~li~~ 262 (857)
T PLN03077 191 PCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--------RDCISWNAMISG 262 (857)
T ss_pred HHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--------CCcchhHHHHHH
Confidence 111223344444444444444321 11334444455555555555555555544321 122345555555
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Q psy3224 719 AEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATF-PSKKSIWLRAAYFEKNHGTRE 797 (1278)
Q Consensus 719 ~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~ 797 (1278)
+.+.|.+.+|..++..+...+..+ +...+..+...+...|+++.|.+++..+++.. +.+..++..++..|.+.|+++
T Consensus 263 ~~~~g~~~eAl~lf~~M~~~g~~P--d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 340 (857)
T PLN03077 263 YFENGECLEGLELFFTMRELSVDP--DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHH
Confidence 555555555555555554443322 13344444555555555555555555554432 224455555555555555555
Q ss_pred HHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCC
Q psy3224 798 SLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAH--CPKSEVLWLMGAKSKWLAGD 875 (1278)
Q Consensus 798 ~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~ 875 (1278)
+|..+|+++.. |+. ..|...+..+.+.|++++|+.+|+++... .|+. ..+..+...+...|+
T Consensus 341 ~A~~vf~~m~~--~d~-------------~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 341 EAEKVFSRMET--KDA-------------VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLSACACLGD 404 (857)
T ss_pred HHHHHHhhCCC--CCe-------------eeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHHHHhccch
Confidence 55555555432 111 12444455555556666677777666553 3544 335555567788899
Q ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy3224 876 VPAARGILSLAFQANPN-SEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERAR 954 (1278)
Q Consensus 876 ~~~A~~~l~~al~~~p~-~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 954 (1278)
++.|.+++..+++.... +..++..+...|.+.|++++|..+|+++. ..+...|..++..|...|+.++|+
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~---------~~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP---------EKDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC---------CCCeeeHHHHHHHHHHCCCHHHHH
Confidence 99999999998887533 57788889999999999999999998753 245678999999999999999999
Q ss_pred HHHHHHHHh-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 955 RLLAKARAS-APTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFP-DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032 (1278)
Q Consensus 955 ~~l~~al~~-~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 1032 (1278)
.+|++++.. .|+...+..+...+...|..+.+..++..+++..- .+..++..+..+|.+.|++++|...|... +
T Consensus 476 ~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~ 551 (857)
T PLN03077 476 IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----E 551 (857)
T ss_pred HHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----C
Confidence 999999864 57778888888888999999999999999888543 34667778889999999999999999886 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHH
Q psy3224 1033 HSVPLWIMLANLEERRKMLIKARSVLEKGRLR--NPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECP--NAGILWAE 1108 (1278)
Q Consensus 1033 ~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P--~~~~~~~~ 1108 (1278)
.+...|..++..|.+.|+.++|+.+|+++... .|+. ..+..+...+.+.|..++|..+|+.+.+..+ .+...|..
T Consensus 552 ~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 57889999999999999999999999998874 4544 4457777789999999999999999985432 24578889
Q ss_pred HHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHH
Q psy3224 1109 AIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLF 1188 (1278)
Q Consensus 1109 ~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~ 1188 (1278)
++.++.+.|+.++|.+.++++.-.|.. .+|..|-..+
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m~~~pd~-------------------------------------------~~~~aLl~ac 667 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKMPITPDP-------------------------------------------AVWGALLNAC 667 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHCCCCCCH-------------------------------------------HHHHHHHHHH
Confidence 999999999999999999988655552 2666666677
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCcchhhhhhhccc
Q psy3224 1189 WCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLA--AEPKHGENWCRVAKNVS 1257 (1278)
Q Consensus 1189 ~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~--~~P~~~~~w~~~~k~~~ 1257 (1278)
...++.+.|....+++++++|++...+..++++|...|+++++.++.+.+.+ +.+..|..|..+...+.
T Consensus 668 ~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~ 738 (857)
T PLN03077 668 RIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVH 738 (857)
T ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEE
Confidence 7899999999999999999999999999999999999999999999999988 67888999998876443
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.98 E-value=1.2e-28 Score=310.40 Aligned_cols=266 Identities=15% Similarity=0.144 Sum_probs=167.8
Q ss_pred CCHHHHHHHHHHHHHhC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 948 NEYERARRLLAKARASA---PT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDT 1023 (1278)
Q Consensus 948 g~~~~A~~~l~~al~~~---p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 1023 (1278)
+.+++|+..|++++... |. ..+|..+|.++...|++++|+..|++++..+|++...|+.+|.++...|++++|+..
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45555555555555542 22 345555555555566666666666666666665555666666666666666666666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Q psy3224 1024 FSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAG 1103 (1278)
Q Consensus 1024 ~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~ 1103 (1278)
|+++++.+|+++.+|..+|.++...|++++|+..|++++.++|++...|..++.++...|++++|+..|++++..+|+++
T Consensus 388 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~ 467 (615)
T TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAP 467 (615)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh
Confidence 66666666665666666666666666666666666666666666555555556666666666666666666666666666
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHh-ccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHH
Q psy3224 1104 ILWAEAIFLEPRPQRKTKSVDALKKC-EHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLL 1182 (1278)
Q Consensus 1104 ~~~~~~~~~~~~~~~~~~A~~~l~k~-~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~ 1182 (1278)
.++..++.++...|++++|+..|+++ ..+|....... +...+.
T Consensus 468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~------------------------------------~~~~l~ 511 (615)
T TIGR00990 468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYM------------------------------------NVLPLI 511 (615)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccc------------------------------------cHHHHH
Confidence 55555555555556666666655554 22222000000 000122
Q ss_pred HHH-HHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchh
Q psy3224 1183 AVS-KLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENW 1249 (1278)
Q Consensus 1183 ~lg-~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w 1249 (1278)
..+ .++...|++++|+.+|++++.++|++..++..+++++...|++++|..++++++++.+..++.+
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~ 579 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV 579 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH
Confidence 223 2334469999999999999999999999999999999999999999999999999998877653
No 19
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=1.3e-27 Score=301.09 Aligned_cols=431 Identities=13% Similarity=0.052 Sum_probs=337.8
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy3224 719 AEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRES 798 (1278)
Q Consensus 719 ~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 798 (1278)
+...|+++.|...|..++...++ ...|..+|.++...|++++|+..+.++++.+|++..+|..++.++...|++++
T Consensus 137 ~~~~~~~~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 137 AYRNKDFNKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33334444444444444433332 34788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHH
Q psy3224 799 LETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPA 878 (1278)
Q Consensus 799 A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 878 (1278)
|+..|..+....+.+.... ...+.. . .+ ..+...+..+++..|.+...+..++..+.. .....
T Consensus 213 A~~~~~~~~~~~~~~~~~~--------~~~~~~---~---l~--~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~ 275 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQS--------AQAVER---L---LK--KFAESKAKEILETKPENLPSVTFVGNYLQS-FRPKP 275 (615)
T ss_pred HHHHHHHHHHhCCCccHHH--------HHHHHH---H---HH--HHHHHHHHHHHhcCCCCCCCHHHHHHHHHH-ccCCc
Confidence 9999988777665543210 000000 0 00 225556677778888776666666665532 22333
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 879 ARGILSLAFQANPNSEEIWLAAVKLE---SENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARR 955 (1278)
Q Consensus 879 A~~~l~~al~~~p~~~~~~~~la~l~---~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 955 (1278)
+...+.......+.....+..++... ...+.+++|+..|++++... ...|....+|..++.++...|++++|+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~---~~~~~~a~a~~~lg~~~~~~g~~~eA~~ 352 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG---KLGEKEAIALNLRGTFKCLKGKHLEALA 352 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 33445555555665544455544433 23478999999999987221 1257788899999999999999999999
Q ss_pred HHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy3224 956 LLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS 1034 (1278)
Q Consensus 956 ~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 1034 (1278)
.|++++..+|. ...|+.++.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+.+|++++..+|++
T Consensus 353 ~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~ 432 (615)
T TIGR00990 353 DLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF 432 (615)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC
Confidence 99999999997 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH-------
Q psy3224 1035 VPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWA------- 1107 (1278)
Q Consensus 1035 ~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~------- 1107 (1278)
..++..+|.++...|++++|+..|++++..+|+++.++..++.++...|++++|+..|.+++...|.....+.
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999987543322
Q ss_pred HHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHH
Q psy3224 1108 EAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKL 1187 (1278)
Q Consensus 1108 ~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~ 1187 (1278)
..+.++...+++++|...++++. ..+|++..++..+|.+
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl-----------------------------------------~l~p~~~~a~~~la~~ 551 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKAL-----------------------------------------IIDPECDIAVATMAQL 551 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHH-----------------------------------------hcCCCcHHHHHHHHHH
Confidence 12223334688888888888751 2234455588899999
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCChhH
Q psy3224 1188 FWCENKNQKCREWFNRTVKIDPDLGDA 1214 (1278)
Q Consensus 1188 ~~~~g~~~~A~~~~~kal~~~P~~~d~ 1214 (1278)
+...|++++|+.+|++++++.+..++.
T Consensus 552 ~~~~g~~~eAi~~~e~A~~l~~~~~e~ 578 (615)
T TIGR00990 552 LLQQGDVDEALKLFERAAELARTEGEL 578 (615)
T ss_pred HHHccCHHHHHHHHHHHHHHhccHHHH
Confidence 999999999999999999999887663
No 20
>KOG2047|consensus
Probab=99.97 E-value=8.4e-25 Score=246.49 Aligned_cols=613 Identities=20% Similarity=0.324 Sum_probs=375.4
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHhc--C------C----chHHHHHHHHH
Q psy3224 504 LKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARL--Q------P----VDTARAVIAQA 571 (1278)
Q Consensus 504 l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~L--~------~----~~~A~~~l~ka 571 (1278)
|+.=+..+|.+...|+..+..... .....-..+|++||+..|.|.++|-.+++. . . +..-..+|+++
T Consensus 16 fEeEilRnp~svk~W~RYIe~k~~-sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~ 94 (835)
T KOG2047|consen 16 FEEEILRNPFSVKCWLRYIEHKAG-SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERC 94 (835)
T ss_pred hHHHHHcCchhHHHHHHHHHHHcc-CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHH
Confidence 666677899999999887765533 333455678899999999999999777631 1 1 22345678888
Q ss_pred HHhCCCCHHHHHHHHHchh---hHHHHHHHHHHHHHhCCCCH--HHHHHHHhc----CCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 572 VRHIPTSVRIWIKAADLET---ETKAKRRVYRKALEHIPNSV--RLWKAAVEL----EDPEDARILLSRAVECCPTSVEL 642 (1278)
Q Consensus 572 L~~~P~s~~lw~~~~~le~---~~~~A~~ll~rAle~~P~s~--~Lw~al~~l----~~~e~A~~~l~kal~~~P~~~~~ 642 (1278)
+-+.-.-+++|+.++++.. ....-|..|.+||...|-.. .+|-.|+++ +-++-++.+|.+.++..|...+-
T Consensus 95 lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~ee 174 (835)
T KOG2047|consen 95 LVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREE 174 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHH
Confidence 8877788889999888665 45667888999998888443 566655543 36778899999999999988777
Q ss_pred HHHH-HHhcCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhhhhCCccccHHH
Q psy3224 643 WLAL-ARLETYENARKVLNKAREN-------IPTDRQIWTTAAKLEEAHGNN---AMVDKIIDRALSSLSANGVEINREH 711 (1278)
Q Consensus 643 w~~l-a~l~~~~~A~~~l~~al~~-------~p~~~~~~~~la~~~~~~g~~---~~A~~il~~al~~~~~~~~~~~~~~ 711 (1278)
++.+ +..++.++|.+.|...+.. .+.+...|..+..+..++-+. -...++++..+..+++.
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq-------- 246 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQ-------- 246 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHH--------
Confidence 7654 4668888888888776643 244667777777666555332 23344555555443322
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q psy3224 712 WFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPS---KKSIWLRAAY 788 (1278)
Q Consensus 712 ~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~---~~~~~~~la~ 788 (1278)
-..+|..+|+.|.+.|.+++|+.+|++++..--. -..++..++.
T Consensus 247 ---------------------------------~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 247 ---------------------------------LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ 293 (835)
T ss_pred ---------------------------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH
Confidence 1346666666666666666666666666654322 1122222222
Q ss_pred HHHH------------------cCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy3224 789 FEKN------------------HGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQ 850 (1278)
Q Consensus 789 ~~~~------------------~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~ 850 (1278)
+... .-+.+-....|+..+...|--....++...++...-|++...++. |+..+.+..|.
T Consensus 294 FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e--~~~~~~i~tyt 371 (835)
T KOG2047|consen 294 FEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYE--GNAAEQINTYT 371 (835)
T ss_pred HHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhc--CChHHHHHHHH
Confidence 2211 011233444556666666655555556666667777887776553 66777888888
Q ss_pred HHHHh-CCC-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy3224 851 KAVAH-CPK-----SEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNS----EEIWLAAVKLESENNEYERARRLLAKA 920 (1278)
Q Consensus 851 ~al~~-~P~-----~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~l~~~~g~~~~A~~~l~~a 920 (1278)
+|++. +|. ...+|..+|.+|...|+++.|+.+|+++++..-.. ..+|...|..+.+..+++.|+.++++|
T Consensus 372 eAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 372 EAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 88874 553 34789999999999999999999999998865332 578999999999999999999999988
Q ss_pred HHhhhhhhcCCCc-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHc
Q psy3224 921 RAQAGAFQANPNS-------------------EEIWLAAVKLESENNEYERARRLLAKARASA-PTPRVMIQSAKLEWCL 980 (1278)
Q Consensus 921 l~~~~~l~~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~la~~~~~~ 980 (1278)
.. -|.. ..+|..++.++...|-++....+|++++.+. -+|.+..++|.++...
T Consensus 452 ~~-------vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 452 TH-------VPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEH 524 (835)
T ss_pred hc-------CCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 52 3332 3344455555555555555555555555442 2345555555555555
Q ss_pred CCHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHH-H--cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHH
Q psy3224 981 DNLERALQLLDEAIKVFP--DFAKLWMMKGQIEE-Q--KNLLDKAHDTFSQAIKKCPHS--VPLWIMLANLEERRKMLIK 1053 (1278)
Q Consensus 981 g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~-~--~g~~~~A~~~~~~al~~~p~~--~~~~~~la~l~~~~g~~~~ 1053 (1278)
.-++++.+.|++.+.+++ +-.++|..+-.-+. + .-..+.|+.+|++|++.||.. ..+++.++.+....|....
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~ 604 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARH 604 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 555555555555554432 33344443332221 1 123445555555555554421 1233344444444455555
Q ss_pred HHHHHHHHHHhCCCCH--HHHHHHHH-HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhc
Q psy3224 1054 ARSVLEKGRLRNPNCA--ELWLAAIR-VEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCE 1130 (1278)
Q Consensus 1054 A~~~l~kal~~~p~~~--~~~~~l~~-~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~ 1130 (1278)
|+++|++|...-+... ++|.-++. +..-.| ......+|++|++.-|++..
T Consensus 605 amsiyerat~~v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~-------------------------- 657 (835)
T KOG2047|consen 605 AMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKA-------------------------- 657 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHH--------------------------
Confidence 5555555433222111 11111111 111111 11122333333333332110
Q ss_pred cCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-CC
Q psy3224 1131 HDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKI-DP 1209 (1278)
Q Consensus 1131 ~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~-~P 1209 (1278)
-..+...|.+-.+.|..+.|+.+|.-+.++ +|
T Consensus 658 -----------------------------------------------r~mclrFAdlEtklGEidRARaIya~~sq~~dP 690 (835)
T KOG2047|consen 658 -----------------------------------------------REMCLRFADLETKLGEIDRARAIYAHGSQICDP 690 (835)
T ss_pred -----------------------------------------------HHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCC
Confidence 125667788888999999999999999886 56
Q ss_pred C-ChhHHHHHHHHHHHhCCHHHHHHHH--HHHHHh
Q psy3224 1210 D-LGDAWAYFYKFEIINGTEETQAEVK--KRCLAA 1241 (1278)
Q Consensus 1210 ~-~~d~~~~l~~~~~~~G~~~~A~~~l--~ka~~~ 1241 (1278)
. +++.|..+-.|+.++|+.+.-++++ +|.++.
T Consensus 691 r~~~~fW~twk~FEvrHGnedT~keMLRikRsvqa 725 (835)
T KOG2047|consen 691 RVTTEFWDTWKEFEVRHGNEDTYKEMLRIKRSVQA 725 (835)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 5 5789999999999999999888887 455543
No 21
>KOG2047|consensus
Probab=99.97 E-value=7e-25 Score=247.14 Aligned_cols=643 Identities=17% Similarity=0.238 Sum_probs=449.3
Q ss_pred HHHHHhcCCCHHHHHHHHhc--CCchHH-HHHHHHHHHhCCCCHHHHHHHHHchhhHHHHHHHHHHHHHhCCCCHHHHHH
Q psy3224 539 MKGCEENQTSEDLWLEAARL--QPVDTA-RAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLWKA 615 (1278)
Q Consensus 539 ~~al~~~P~s~~lwl~~a~L--~~~~~A-~~~l~kaL~~~P~s~~lw~~~~~le~~~~~A~~ll~rAle~~P~s~~Lw~a 615 (1278)
+.-+..+|.|++.|+.++.. +.+... ..+|++++...|.|.++|..++..-. ......+|.+.
T Consensus 17 EeEilRnp~svk~W~RYIe~k~~sp~k~~~~lYERal~~lp~sykiW~~YL~~R~---------~~vk~~~~T~~----- 82 (835)
T KOG2047|consen 17 EEEILRNPFSVKCWLRYIEHKAGSPDKQRNLLYERALKELPGSYKIWYDYLKARR---------AQVKHLCPTDP----- 82 (835)
T ss_pred HHHHHcCchhHHHHHHHHHHHccCChHHHHHHHHHHHHHCCCchHHHHHHHHHHH---------HHhhccCCCCh-----
Confidence 33444555555555555542 233322 23555555555555555555442110 11112333332
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH----hcCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHH
Q psy3224 616 AVELEDPEDARILLSRAVECCPTSVELWLALAR----LETYENARKVLNKARENIPT--DRQIWTTAAKLEEAHGNNAMV 689 (1278)
Q Consensus 616 l~~l~~~e~A~~~l~kal~~~P~~~~~w~~la~----l~~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~A 689 (1278)
.|+....+|++++-..-.-+.+|+.|++ .+....-+..|.+++...|- +..+|-.+..+....|-++.+
T Consensus 83 -----~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets 157 (835)
T KOG2047|consen 83 -----AYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETS 157 (835)
T ss_pred -----HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHH
Confidence 3455667788887766677789988776 37888889999999998886 457899999999999999999
Q ss_pred HHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC----CCccchHhhHHHHHHHHHHcCCHH--
Q psy3224 690 DKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYG----VEQEDRKHTWMEDAESCANQGAYE-- 763 (1278)
Q Consensus 690 ~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~----~~~~~~~~~~~~la~~~~~~g~~~-- 763 (1278)
..+|++.++..|.. .-.....+...+..++|.+.+..++... ...+.+..+|..+.+...++-+.-
T Consensus 158 ~rvyrRYLk~~P~~--------~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~s 229 (835)
T KOG2047|consen 158 IRVYRRYLKVAPEA--------REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQS 229 (835)
T ss_pred HHHHHHHHhcCHHH--------HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcc
Confidence 99999999875543 3445566777888888888888887642 122446779999988877764332
Q ss_pred -HHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCC
Q psy3224 764 -CARAIYAQALATFPSKK-SIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGT 841 (1278)
Q Consensus 764 -~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~ 841 (1278)
.--.+++..+..+++.. .+|..+|..|.+.|.++.|..+|++++..--.-... ..++-.++.++...-.
T Consensus 230 lnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDF---------t~ifd~Ya~FEE~~~~ 300 (835)
T KOG2047|consen 230 LNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDF---------TQIFDAYAQFEESCVA 300 (835)
T ss_pred cCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhH---------HHHHHHHHHHHHHHHH
Confidence 23467788888888765 589999999999999999999999998775544321 2344455555432110
Q ss_pred HHHHHHHHHHHHHh--CC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy3224 842 RESLETLLQKAVAH--CP-KSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLA 918 (1278)
Q Consensus 842 ~~~A~~~~~~al~~--~P-~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~ 918 (1278)
...+-+-+. ++ ....+-+.++.........+.- +=.-++..+|++..-|.....++. |+..+-+..|.
T Consensus 301 -----~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~--lNsVlLRQn~~nV~eW~kRV~l~e--~~~~~~i~tyt 371 (835)
T KOG2047|consen 301 -----AKMELADEESGNEEDDVDLELHMARFESLMNRRPLL--LNSVLLRQNPHNVEEWHKRVKLYE--GNAAEQINTYT 371 (835)
T ss_pred -----HHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH--HHHHHHhcCCccHHHHHhhhhhhc--CChHHHHHHHH
Confidence 000101111 11 1223333444433322222211 112356778999999988887765 78888888998
Q ss_pred HHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 919 KARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASA-PT----PRVMIQSAKLEWCLDNLERALQLLDEA 993 (1278)
Q Consensus 919 ~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~----~~~~~~la~~~~~~g~~~~A~~~l~~a 993 (1278)
.|+...........-..+|..++.+|...|+.+.|+.+|+++.+.. +. ..+|...|.......+++.|+.+++++
T Consensus 372 eAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 372 EAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 8885332222222345789999999999999999999999998874 33 589999999999999999999999988
Q ss_pred HHhCC------------------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy3224 994 IKVFP------------------DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKAR 1055 (1278)
Q Consensus 994 l~~~p------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~ 1055 (1278)
...-. .+..+|..++.+....|-++....+|.+.+.+---.|.+..++|.++....-++++.
T Consensus 452 ~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesF 531 (835)
T KOG2047|consen 452 THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESF 531 (835)
T ss_pred hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHH
Confidence 75421 236889999999999999999999999999998888999999999999999999999
Q ss_pred HHHHHHHHhCC--CCHHHHHHHHH-HHHHcC--CHHHHHHHHHHHHHHCCCc--HHHHHHHHhccCCCCChhHHHHHHHH
Q psy3224 1056 SVLEKGRLRNP--NCAELWLAAIR-VEIRAG--LKDIANTMMAKALQECPNA--GILWAEAIFLEPRPQRKTKSVDALKK 1128 (1278)
Q Consensus 1056 ~~l~kal~~~p--~~~~~~~~l~~-~~~~~g--~~~~A~~~~~kal~~~P~~--~~~~~~~~~~~~~~~~~~~A~~~l~k 1128 (1278)
+.|++.+.+.+ .-.++|..+.. +-.+.| ..+.|..+|++||+.||.. ..++..++.+....|--..|+.+|++
T Consensus 532 k~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyer 611 (835)
T KOG2047|consen 532 KAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYER 611 (835)
T ss_pred HHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999874 66688888776 333444 6899999999999999843 25666778888888888999999999
Q ss_pred hccC--cchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHH
Q psy3224 1129 CEHD--PHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAV-SKLFWCENKNQKCREWFNRTV 1205 (1278)
Q Consensus 1129 ~~~~--p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~l-g~~~~~~g~~~~A~~~~~kal 1205 (1278)
+... +.....+-+ ++... +.+| -....+.+|++|+
T Consensus 612 at~~v~~a~~l~myn--------------------------------------i~I~kaae~y----Gv~~TR~iYekaI 649 (835)
T KOG2047|consen 612 ATSAVKEAQRLDMYN--------------------------------------IYIKKAAEIY----GVPRTREIYEKAI 649 (835)
T ss_pred HHhcCCHHHHHHHHH--------------------------------------HHHHHHHHHh----CCcccHHHHHHHH
Confidence 8322 221111100 11111 1222 2345688999999
Q ss_pred hhCCCCh--hHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-C-CCcchhhhhh---hccccCCCCHHHHHHH
Q psy3224 1206 KIDPDLG--DAWAYFYKFEIINGTEETQAEVKKRCLAAE-P-KHGENWCRVA---KNVSNWKLPRETILSL 1269 (1278)
Q Consensus 1206 ~~~P~~~--d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~-P-~~~~~w~~~~---k~~~~~~~~~~~~l~~ 1269 (1278)
+.-|+.. +....++.++.+.|..+.|..++..+.+.. | .++++|.+.. -.++| ..+..|||++
T Consensus 650 e~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn-edT~keMLRi 719 (835)
T KOG2047|consen 650 ESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN-EDTYKEMLRI 719 (835)
T ss_pred HhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC-HHHHHHHHHH
Confidence 9988763 467788999999999999999999999955 4 5677777654 46777 7778888875
No 22
>PLN03077 Protein ECB2; Provisional
Probab=99.96 E-value=1.7e-24 Score=283.45 Aligned_cols=629 Identities=12% Similarity=0.068 Sum_probs=490.8
Q ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc-CCCHHHHHHHH----hcCCchHHHHHHHHHHHhCCCCHHHHHHHH
Q psy3224 512 PNHPPAWIASARLEEVTGKVQAARNLIMKGCEEN-QTSEDLWLEAA----RLQPVDTARAVIAQAVRHIPTSVRIWIKAA 586 (1278)
Q Consensus 512 P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~-P~s~~lwl~~a----~L~~~~~A~~~l~kaL~~~P~s~~lw~~~~ 586 (1278)
+-+...+..+.+.+...|++++|..+|..+.+.. |.+...+...+ .......+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a---------------------- 105 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEG---------------------- 105 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHH----------------------
Confidence 4556678888889999999999999999987742 33333332211 11223333
Q ss_pred HchhhHHHHHHHHHHHHHhCCCC-H----HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHhcCHHHHHH
Q psy3224 587 DLETETKAKRRVYRKALEHIPNS-V----RLWKAAVELEDPEDARILLSRAVECCPTSVELWL----ALARLETYENARK 657 (1278)
Q Consensus 587 ~le~~~~~A~~ll~rAle~~P~s-~----~Lw~al~~l~~~e~A~~~l~kal~~~P~~~~~w~----~la~l~~~~~A~~ 657 (1278)
..++..++...+.. + .+...|.+.|+.+.|..+|+++.+. +...|. .+++.+.+++|..
T Consensus 106 ---------~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~---d~~~~n~li~~~~~~g~~~~A~~ 173 (857)
T PLN03077 106 ---------SRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER---DLFSWNVLVGGYAKAGYFDEALC 173 (857)
T ss_pred ---------HHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCC---CeeEHHHHHHHHHhCCCHHHHHH
Confidence 44444444333221 1 2344577888999999999887542 333443 4667899999999
Q ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHH
Q psy3224 658 VLNKAREN--IPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAI 735 (1278)
Q Consensus 658 ~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~ 735 (1278)
+|.++... .| +...+..+...+...++...+.+++..+++. |..++...+......+.+.|+++.|..+|..+
T Consensus 174 ~f~~M~~~g~~P-d~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m 248 (857)
T PLN03077 174 LYHRMLWAGVRP-DVYTFPCVLRTCGGIPDLARGREVHAHVVRF----GFELDVDVVNALITMYVKCGDVVSARLVFDRM 248 (857)
T ss_pred HHHHHHHcCCCC-ChhHHHHHHHHhCCccchhhHHHHHHHHHHc----CCCcccchHhHHHHHHhcCCCHHHHHHHHhcC
Confidence 99998763 34 6667777778888888888888888888764 56667778888888999999999999999876
Q ss_pred HhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchH
Q psy3224 736 IGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATF-PSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSE 814 (1278)
Q Consensus 736 l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 814 (1278)
... +...|..+...|.+.|++++|..+|.++.... ..+...+..+...+...|+.+.|.+++..+++..-...
T Consensus 249 ~~~------d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d 322 (857)
T PLN03077 249 PRR------DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVD 322 (857)
T ss_pred CCC------CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccc
Confidence 431 24689999999999999999999999998763 23566778888888899999999999988877642221
Q ss_pred HHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Q psy3224 815 VLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQAN--PN 892 (1278)
Q Consensus 815 ~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~ 892 (1278)
..++..++..+...|++++|..+|+++.. .+...|..+...|.+.|++++|..+|.+..+.. |+
T Consensus 323 -----------~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd 388 (857)
T PLN03077 323 -----------VSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388 (857)
T ss_pred -----------hHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC
Confidence 23577778888889999999999998753 355679999999999999999999999886654 64
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHH
Q psy3224 893 SEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQ 972 (1278)
Q Consensus 893 ~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 972 (1278)
...+..+...+...|+++.|..++..+.. .....+..++..++..|.+.|++++|..+|+++.. ++...|..
T Consensus 389 -~~t~~~ll~a~~~~g~~~~a~~l~~~~~~-----~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs~~~ 460 (857)
T PLN03077 389 -EITIASVLSACACLGDLDVGVKLHELAER-----KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KDVISWTS 460 (857)
T ss_pred -ceeHHHHHHHHhccchHHHHHHHHHHHHH-----hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeeeHHH
Confidence 45666677788899999999999998872 23445677888999999999999999999998753 55678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Q psy3224 973 SAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP-HSVPLWIMLANLEERRKML 1051 (1278)
Q Consensus 973 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~l~~~~g~~ 1051 (1278)
+...+...|+.++|+.+|++++...+-+...+..+...+.+.|..+.+.+++..+++..- .+..+...+..+|.+.|++
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 999999999999999999999876555577777788888899999999999998887642 3456777889999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHhccCCCCChhHHHHHHHHh
Q psy3224 1052 IKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQE--CPNAGILWAEAIFLEPRPQRKTKSVDALKKC 1129 (1278)
Q Consensus 1052 ~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~--~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~ 1129 (1278)
++|...|+.. +.+...|..++..+.+.|+.++|..+|+++.+. .|+. ..+..++..+.+.|..++|..+|+.+
T Consensus 541 ~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 541 NYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 9999999886 557788999999999999999999999998874 4554 44555677788899999999999988
Q ss_pred c-cCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy3224 1130 E-HDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKID 1208 (1278)
Q Consensus 1130 ~-~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~ 1208 (1278)
. ..+. .-+...+..+..+|.+.|++++|.+++++. ...
T Consensus 616 ~~~~gi----------------------------------------~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~ 654 (857)
T PLN03077 616 EEKYSI----------------------------------------TPNLKHYACVVDLLGRAGKLTEAYNFINKM-PIT 654 (857)
T ss_pred HHHhCC----------------------------------------CCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCC
Confidence 4 2211 012237888999999999999999999986 355
Q ss_pred CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchhhhhhh
Q psy3224 1209 PDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCRVAK 1254 (1278)
Q Consensus 1209 P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w~~~~k 1254 (1278)
|+ ..+|..+...+..+|+.+.++...+++++++|+++..+..+..
T Consensus 655 pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n 699 (857)
T PLN03077 655 PD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCN 699 (857)
T ss_pred CC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHH
Confidence 64 6789999889999999999999999999999999988887765
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=1e-24 Score=273.47 Aligned_cols=339 Identities=11% Similarity=0.017 Sum_probs=280.7
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccch
Q psy3224 746 KHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNK 825 (1278)
Q Consensus 746 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~ 825 (1278)
.......+..+...|+++.|..+++.++...|.+..++..++.+....|++++|+..|++++..+|++..
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~---------- 111 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE---------- 111 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH----------
Confidence 3455667778889999999999999999999999999999999999999999999999988888888864
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy3224 826 KSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLES 905 (1278)
Q Consensus 826 ~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~ 905 (1278)
.|...+.++...|++++|+..|++++..+|.+..++..++.++...|++++|...+.+++...|++..++..++. +.
T Consensus 112 --a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~-l~ 188 (656)
T PRK15174 112 --DVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLS-FL 188 (656)
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HH
Confidence 466667777888888888888888888888888888888888888888888888888888888888777766543 67
Q ss_pred hcCcHHHHHHHHHHHHHhhhhhhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCH
Q psy3224 906 ENNEYERARRLLAKARAQAGAFQANP-NSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNL 983 (1278)
Q Consensus 906 ~~g~~~~A~~~l~~al~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~ 983 (1278)
..|++++|+..+++++ ...| .....+..++.++...|++++|+..|.+++...|+ +.++..+|.++...|++
T Consensus 189 ~~g~~~eA~~~~~~~l------~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 189 NKSRLPEDHDLARALL------PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRS 262 (656)
T ss_pred HcCCHHHHHHHHHHHH------hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc
Confidence 7888888888888876 4444 33344455677778888888888888888888775 57788888888888888
Q ss_pred HH----HHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 984 ER----ALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLE 1059 (1278)
Q Consensus 984 ~~----A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~ 1059 (1278)
++ |+..|++++..+|+++.++..+|.++...|++++|+..|++++...|+++.++..++.++...|++++|+..|+
T Consensus 263 ~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 263 REAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 75 78888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Q psy3224 1060 KGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAG 1103 (1278)
Q Consensus 1060 kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~ 1103 (1278)
+++..+|++...+...+.++...|++++|+..|+++++..|++.
T Consensus 343 ~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 343 QLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 88888888776666667788888888888888888888888764
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=1.3e-24 Score=278.29 Aligned_cols=406 Identities=12% Similarity=-0.018 Sum_probs=244.0
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccch
Q psy3224 746 KHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNK 825 (1278)
Q Consensus 746 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~ 825 (1278)
......+..+..-.|+.++|+.+|.++....|....++..++.++...|++++|..+++++++..|.+..
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~---------- 84 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD---------- 84 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----------
Confidence 4455566677777888888888888888878888888888888888888888888888888888777754
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy3224 826 KSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLES 905 (1278)
Q Consensus 826 ~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~ 905 (1278)
.+...+.++...|++++|+..++++++.+|++.. +..+|.++...|++++|+..|+++++..|++..++..++.++.
T Consensus 85 --a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 85 --YQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4556666677778888888888888888887777 7777888777888888888888888888877777777777777
Q ss_pred hcCcHHHHHHHHHHHHHhhhhhhcCCCcHH-----HHHHHHHHHH-----HcCCH---HHHHHHHHHHHHhC---CCHHH
Q psy3224 906 ENNEYERARRLLAKARAQAGAFQANPNSEE-----IWLAAVKLES-----ENNEY---ERARRLLAKARASA---PTPRV 969 (1278)
Q Consensus 906 ~~g~~~~A~~~l~~al~~~~~l~~~p~~~~-----~~~~la~~~~-----~~g~~---~~A~~~l~~al~~~---p~~~~ 969 (1278)
..+..+.|+..++++. . .|.... .....+.+.. ..+++ ++|+..++.++... |....
T Consensus 162 ~~~~~e~Al~~l~~~~------~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~ 234 (765)
T PRK10049 162 NNRLSAPALGAIDDAN------L-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA 234 (765)
T ss_pred HCCChHHHHHHHHhCC------C-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch
Confidence 7777777777776653 2 332100 1111111111 11122 44555555555432 21111
Q ss_pred HHHH-----HHHHHHcCCHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHH
Q psy3224 970 MIQS-----AKLEWCLDNLERALQLLDEAIKVFPDFA-KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS----VPLWI 1039 (1278)
Q Consensus 970 ~~~l-----a~~~~~~g~~~~A~~~l~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~ 1039 (1278)
.+.. ...+...|++++|+..|+++++..|..+ .+...++.++...|++++|+.+|++++...|.+ ...+.
T Consensus 235 ~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~ 314 (765)
T PRK10049 235 DYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA 314 (765)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH
Confidence 1111 1122344555555555555555432111 122223555555555555555555555554433 22334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Q psy3224 1040 MLANLEERRKMLIKARSVLEKGRLRNPNC---------------AELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGI 1104 (1278)
Q Consensus 1040 ~la~l~~~~g~~~~A~~~l~kal~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~ 1104 (1278)
.++.++...|++++|+.+++++....|.. ..++..++.++...|++++|+.++++++...|.+.
T Consensus 315 ~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~- 393 (765)
T PRK10049 315 DLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ- 393 (765)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-
Confidence 44444455555555555555555554421 12333444444555555555555555555555444
Q ss_pred HHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHH
Q psy3224 1105 LWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAV 1184 (1278)
Q Consensus 1105 ~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~l 1184 (1278)
.+++.+
T Consensus 394 --------------------------------------------------------------------------~l~~~l 399 (765)
T PRK10049 394 --------------------------------------------------------------------------GLRIDY 399 (765)
T ss_pred --------------------------------------------------------------------------HHHHHH
Confidence 455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc
Q psy3224 1185 SKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHG 1246 (1278)
Q Consensus 1185 g~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~ 1246 (1278)
|.++...|++++|++.+++++.++|++..++..++.++...|++++|+.+++++++..|+++
T Consensus 400 A~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~ 461 (765)
T PRK10049 400 ASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP 461 (765)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence 66666666666666666666666666666666666666666666666666666666666665
No 25
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=1.6e-24 Score=271.69 Aligned_cols=348 Identities=11% Similarity=-0.003 Sum_probs=309.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHH
Q psy3224 833 AYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYER 912 (1278)
Q Consensus 833 a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~ 912 (1278)
+.-....|++++|+.+++.++...|.+..++..++.+....|+++.|+..|++++...|+++.++..++.++...|++++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 44456779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 913 ARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTP-RVMIQSAKLEWCLDNLERALQLLD 991 (1278)
Q Consensus 913 A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~ 991 (1278)
|+..|++++ ..+|.+..++..++.++...|++++|+..+.+++...|++ ..+... ..+...|++++|+..++
T Consensus 129 Ai~~l~~Al------~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 129 VADLAEQAW------LAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred HHHHHHHHH------HhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 999999998 8899999999999999999999999999999999998864 444444 34788999999999999
Q ss_pred HHHHhCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCC
Q psy3224 992 EAIKVFP-DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIK----ARSVLEKGRLRNP 1066 (1278)
Q Consensus 992 ~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~----A~~~l~kal~~~p 1066 (1278)
+++..+| .....+..++.++...|++++|+..|.+++...|+++.++..+|.++...|++++ |+..|++++..+|
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 9999876 4445556678889999999999999999999999999999999999999999986 8999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHh-ccCcchhhhhhhhhhh
Q psy3224 1067 NCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKC-EHDPHVLLAVSKLFWC 1145 (1278)
Q Consensus 1067 ~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~-~~~p~~~~~~~~l~~~ 1145 (1278)
+++.++..++.++...|++++|+..+++++...|+++.++..++.++...|++++|+..|+++ ..+|.
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~----------- 350 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV----------- 350 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999877 33443
Q ss_pred hcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-----HHHHHHH
Q psy3224 1146 ENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGD-----AWAYFYK 1220 (1278)
Q Consensus 1146 ~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d-----~~~~l~~ 1220 (1278)
++.....+|.++...|++++|+..|+++++.+|++.. +...|..
T Consensus 351 -------------------------------~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~ 399 (656)
T PRK15174 351 -------------------------------TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDG 399 (656)
T ss_pred -------------------------------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHH
Confidence 3445666788999999999999999999999998643 3344444
Q ss_pred HHHHhCCHH
Q psy3224 1221 FEIINGTEE 1229 (1278)
Q Consensus 1221 ~~~~~G~~~ 1229 (1278)
++...+...
T Consensus 400 ~~~~~~~~~ 408 (656)
T PRK15174 400 QISAVNLPP 408 (656)
T ss_pred HHHhcCCcc
Confidence 444444443
No 26
>KOG2076|consensus
Probab=99.95 E-value=4.2e-22 Score=234.87 Aligned_cols=652 Identities=13% Similarity=0.097 Sum_probs=394.1
Q ss_pred chHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHh----cCCchHHHHHHHH
Q psy3224 495 NDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAAR----LQPVDTARAVIAQ 570 (1278)
Q Consensus 495 g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~----L~~~~~A~~~l~k 570 (1278)
|+++.|..++.++++.+|.++.+|.-+|.++.+.|+.+.|....--|-..+|++...|...+. ++....|+-+|.+
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~r 232 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSR 232 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988777676677777666654433 3344455555555
Q ss_pred HHHhCCCCHHHHHHHHHchhhHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH------H
Q psy3224 571 AVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLWKAAVELEDPEDARILLSRAVECCPTSVELW------L 644 (1278)
Q Consensus 571 aL~~~P~s~~lw~~~~~le~~~~~A~~ll~rAle~~P~s~~Lw~al~~l~~~e~A~~~l~kal~~~P~~~~~w------~ 644 (1278)
||+.+|.+..+......| |-++|++..|...|.+++..+|...--| .
T Consensus 233 AI~~~p~n~~~~~ers~L---------------------------~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 233 AIQANPSNWELIYERSSL---------------------------YQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred HHhcCCcchHHHHHHHHH---------------------------HHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 555555554433333322 3344566666666666666666221111 1
Q ss_pred ---HHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHH
Q psy3224 645 ---ALARLETYENARKVLNKARENI--PTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEA 719 (1278)
Q Consensus 645 ---~la~l~~~~~A~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~ 719 (1278)
.+...++.+.|.+.++.++... -.+.+....++.++.+...++.+...+...... ..+.+...|...-..
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r----~~e~d~~e~~~~~~~- 360 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR----ESEKDDSEWDTDERR- 360 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc----ccCCChhhhhhhhhc-
Confidence 1112344577778887777722 223455667788888888888877766655541 111222233211000
Q ss_pred HHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCH
Q psy3224 720 EKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATF--PS-KKSIWLRAAYFEKNHGTR 796 (1278)
Q Consensus 720 ~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~-~~~~~~~la~~~~~~g~~ 796 (1278)
. .+ .......+.+-.....+ +.+.-++......+....+.......+ |. +.++++.++.++...|.+
T Consensus 361 ----~-~~----~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~ 430 (895)
T KOG2076|consen 361 ----R-EE----PNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKY 430 (895)
T ss_pred ----c-cc----ccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccH
Confidence 0 00 00011111111111112 122223333332233333333333333 33 446677777777777777
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q psy3224 797 ESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDV 876 (1278)
Q Consensus 797 ~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~ 876 (1278)
..|+.+|..+....+... ..+|+..+.++...|.+++|+..|++++...|.+.++.+.++.++..+|+.
T Consensus 431 ~~Al~~l~~i~~~~~~~~-----------~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~ 499 (895)
T KOG2076|consen 431 KEALRLLSPITNREGYQN-----------AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNH 499 (895)
T ss_pred HHHHHHHHHHhcCccccc-----------hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCH
Confidence 777777777666555443 336777777777777777788888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhh-----------------hcC
Q psy3224 877 PAARGILSLAFQANPN---------SEEIWLAAVKLESENNEYERARRLLAKARAQAGAF-----------------QAN 930 (1278)
Q Consensus 877 ~~A~~~l~~al~~~p~---------~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l-----------------~~~ 930 (1278)
++|.+.+.+...-++. ...+......++.+.|+.++=+.+...++...-.. ...
T Consensus 500 EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~ 579 (895)
T KOG2076|consen 500 EKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTS 579 (895)
T ss_pred HHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccc
Confidence 8888777775522211 12344566666777777766444444333211100 011
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHh-CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--
Q psy3224 931 PNSEEIWLAAVKLESENNEYERARRLLAKA-----RAS-APTP----RVMIQSAKLEWCLDNLERALQLLDEAIKVFP-- 998 (1278)
Q Consensus 931 p~~~~~~~~la~~~~~~g~~~~A~~~l~~a-----l~~-~p~~----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p-- 998 (1278)
+............-...++.......+... ... .-+. .++..+...+...+.+++|..+...++...-
T Consensus 580 ~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~ 659 (895)
T KOG2076|consen 580 KRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFF 659 (895)
T ss_pred cccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhh
Confidence 222222222222222222222221111111 000 1112 4555566677889999999999999887532
Q ss_pred ChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q psy3224 999 DFA----KLWMMKGQIEEQKNLLDKAHDTFSQAIKK-----CPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNC- 1068 (1278)
Q Consensus 999 ~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~- 1068 (1278)
.+. .+-.....+.+..+++..|..+++..+.. +|....+|...-.+....++-.-=...+.+++..+|++
T Consensus 660 ~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~ 739 (895)
T KOG2076|consen 660 QDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDT 739 (895)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCC
Confidence 222 23333344557789999999999999988 66667777755555555555555556666677777876
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCC--CCCh--------hHHHHHHHHhccCcchhhh
Q psy3224 1069 AELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPR--PQRK--------TKSVDALKKCEHDPHVLLA 1138 (1278)
Q Consensus 1069 ~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~--~~~~--------~~A~~~l~k~~~~p~~~~~ 1138 (1278)
+......|......+.+..|+..|-++...+|++|.+-..++..+.. .++. -+.+..+++..+
T Consensus 740 ~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~------- 812 (895)
T KOG2076|consen 740 PPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKE------- 812 (895)
T ss_pred cceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-------
Confidence 66667778888899999999999999999999999776666554321 1111 111222221100
Q ss_pred hhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------
Q psy3224 1139 VSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDL------- 1211 (1278)
Q Consensus 1139 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~------- 1211 (1278)
+....+.-++.+++|.+|...|-..-|+.+|+++|...|-.
T Consensus 813 --------------------------------lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d 860 (895)
T KOG2076|consen 813 --------------------------------LRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKED 860 (895)
T ss_pred --------------------------------hhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCC
Confidence 00011123499999999999999999999999999986542
Q ss_pred -----hhHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy3224 1212 -----GDAWAYFYKFEIINGTEETQAEVKKRC 1238 (1278)
Q Consensus 1212 -----~d~~~~l~~~~~~~G~~~~A~~~l~ka 1238 (1278)
-++-+++.-+|...|+...|..++.+-
T Consensus 861 ~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 861 NYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred cccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 137888999999999999999998764
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=6.2e-24 Score=272.17 Aligned_cols=401 Identities=12% Similarity=0.048 Sum_probs=261.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHH----HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 618 ELEDPEDARILLSRAVECCPTSVELWLALA----RLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKII 693 (1278)
Q Consensus 618 ~l~~~e~A~~~l~kal~~~P~~~~~w~~la----~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il 693 (1278)
..|++++|+.++.++....|....++..++ +.+++++|...|+++++..|.++.++..++.++...|++++|...+
T Consensus 27 ~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l 106 (765)
T PRK10049 27 WAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKA 106 (765)
T ss_pred HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 334444454444444444444443333222 2344444444444444444444444444444444444444444444
Q ss_pred HHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 694 DRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQAL 773 (1278)
Q Consensus 694 ~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 773 (1278)
++++...|+ ... |..+|.++...|++++|+..|++++
T Consensus 107 ~~~l~~~P~------------------------------------------~~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 107 KQLVSGAPD------------------------------------------KAN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HHHHHhCCC------------------------------------------CHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444433221 133 6666666666666666666666666
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy3224 774 ATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAV 853 (1278)
Q Consensus 774 ~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al 853 (1278)
+..|++..++..++.++...+..+.|+..++++.. .|... ..+
T Consensus 144 ~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~------------------------------------~~l 186 (765)
T PRK10049 144 PRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEK------------------------------------RDL 186 (765)
T ss_pred HhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHH------------------------------------HHH
Confidence 66666666666666666666666666666655443 33211 011
Q ss_pred HhCCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCHHH-------HHH-HHHHHHhcCcHHHHHHHHHHHHH
Q psy3224 854 AHCPKSEVLWLMGAKSKWLAGDV---PAARGILSLAFQANPNSEEI-------WLA-AVKLESENNEYERARRLLAKARA 922 (1278)
Q Consensus 854 ~~~P~~~~~~~~la~~~~~~g~~---~~A~~~l~~al~~~p~~~~~-------~~~-la~l~~~~g~~~~A~~~l~~al~ 922 (1278)
..+|....+...++......+++ ++|+..|+.+++..|.++.. .+. ++.+ ...+++++|+..|++++
T Consensus 187 ~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~~~~ll- 264 (765)
T PRK10049 187 EADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL-LARDRYKDVISEYQRLK- 264 (765)
T ss_pred HHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHhhhHHHHHHHHHHhh-
Confidence 11111111111111111222233 67788888887664433221 111 2333 46688888888888876
Q ss_pred hhhhhhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 923 QAGAFQAN---PNSEEIWLAAVKLESENNEYERARRLLAKARASAPTP-----RVMIQSAKLEWCLDNLERALQLLDEAI 994 (1278)
Q Consensus 923 ~~~~l~~~---p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~la~~~~~~g~~~~A~~~l~~al 994 (1278)
... |.+...| ++.++...|++++|+.+|++++...|.. .....++.++...|++++|+.+++++.
T Consensus 265 -----~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~ 337 (765)
T PRK10049 265 -----AEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTI 337 (765)
T ss_pred -----ccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 443 3333334 4778888888888888888888776542 455666667788888888888888888
Q ss_pred HhCCC---------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 995 KVFPD---------------FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLE 1059 (1278)
Q Consensus 995 ~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~ 1059 (1278)
...|. ...++..++.++...|++++|+.++++++...|.++.++..+|.++...|++++|+..++
T Consensus 338 ~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~ 417 (765)
T PRK10049 338 NNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELK 417 (765)
T ss_pred hcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 87762 245778889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Q psy3224 1060 KGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWA 1107 (1278)
Q Consensus 1060 kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~ 1107 (1278)
+++.++|++..++...+.++...|++++|..+++++++..|+++.+..
T Consensus 418 ~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 418 KAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred HHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999999999999999999999999986654
No 28
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.94 E-value=1.5e-22 Score=258.82 Aligned_cols=478 Identities=12% Similarity=0.057 Sum_probs=369.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHH
Q psy3224 672 IWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWME 751 (1278)
Q Consensus 672 ~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~ 751 (1278)
.|......+.+.|++..|..+|+.+... .+..++..++......+...+.+..+.+++..+...+..+ +..++..
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~---~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~--~~~~~n~ 163 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAG---CPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP--DQYMMNR 163 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhc---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc--chHHHHH
Confidence 4555556666666677777766665432 1123445556666666666666666666666666554432 2457777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHH
Q psy3224 752 DAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLR 831 (1278)
Q Consensus 752 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~ 831 (1278)
+...|.+.|+++.|..+|+++.. | +...|..+...+.+.|++++|..+|+++.+..+.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~------------------- 221 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSD------------------- 221 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-------------------
Confidence 77888888888888888877643 2 4566777777777777777766555554432211
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcH
Q psy3224 832 AAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQAN-PNSEEIWLAAVKLESENNEY 910 (1278)
Q Consensus 832 ~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~l~~~~g~~ 910 (1278)
.+...+..+...+...|....+.+++..+++.. ..+..++..+...|.+.|++
T Consensus 222 --------------------------p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~ 275 (697)
T PLN03081 222 --------------------------AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275 (697)
T ss_pred --------------------------CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence 123344555556667788888888877777654 22567788888899999999
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 911 ERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAS--APTPRVMIQSAKLEWCLDNLERALQ 988 (1278)
Q Consensus 911 ~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~ 988 (1278)
++|..+|+.+ .+.+...|..++..|.+.|++++|..+|+++... .|+...+..+...+...|.+++|..
T Consensus 276 ~~A~~vf~~m---------~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 276 EDARCVFDGM---------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HHHHHHHHhC---------CCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHH
Confidence 9999988875 3457788999999999999999999999998775 5778889999999999999999999
Q ss_pred HHHHHHHhC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Q psy3224 989 LLDEAIKVF-PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNP- 1066 (1278)
Q Consensus 989 ~l~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p- 1066 (1278)
++..+++.. +.+..++..++..|.+.|++++|..+|++..+ | +...|..++..|.+.|+.++|+++|+++.....
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999865 55678899999999999999999999998754 3 567899999999999999999999999887532
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhh
Q psy3224 1067 NCAELWLAAIRVEIRAGLKDIANTMMAKALQECP--NAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFW 1144 (1278)
Q Consensus 1067 ~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P--~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~ 1144 (1278)
-+...+..+...+...|..++|..+|+.+.+..+ .+...|..++.++.+.|+.++|.+.++++...|..
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~--------- 494 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV--------- 494 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCH---------
Confidence 2445568888899999999999999999987543 33467888999999999999999999988655552
Q ss_pred hhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q psy3224 1145 CENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEII 1224 (1278)
Q Consensus 1145 ~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~ 1224 (1278)
.+|..+...+...|+++.|...+++++.+.|++...|..+..+|.+
T Consensus 495 ----------------------------------~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~ 540 (697)
T PLN03081 495 ----------------------------------NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS 540 (697)
T ss_pred ----------------------------------HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh
Confidence 2778888889999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHh--CCCCcchhhhhhhccc
Q psy3224 1225 NGTEETQAEVKKRCLAA--EPKHGENWCRVAKNVS 1257 (1278)
Q Consensus 1225 ~G~~~~A~~~l~ka~~~--~P~~~~~w~~~~k~~~ 1257 (1278)
.|++++|.++++.+.+. .+..+..|..+.+.+.
T Consensus 541 ~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~ 575 (697)
T PLN03081 541 SGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDH 575 (697)
T ss_pred CCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEE
Confidence 99999999999999884 4567888988765443
No 29
>KOG1127|consensus
Probab=99.93 E-value=2.2e-21 Score=228.44 Aligned_cols=492 Identities=13% Similarity=0.065 Sum_probs=312.8
Q ss_pred hhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 725 VHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQ 804 (1278)
Q Consensus 725 ~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~ 804 (1278)
...|...+-.++...+. -..+|..+|..|...-+...|.++|.+|++++|.+..++-..+..+....+++.|....-
T Consensus 474 ~~~al~ali~alrld~~---~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS---LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 33444444444444322 245677777777776677777777777777777777777777777777777777777765
Q ss_pred HHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 805 KAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILS 884 (1278)
Q Consensus 805 ~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~ 884 (1278)
++-+..|.... ...|...+.++...++...|+..|+.++..+|.+..+|..+|.+|...|.+..|+++|.
T Consensus 551 ~~~qka~a~~~----------k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~ 620 (1238)
T KOG1127|consen 551 RAAQKAPAFAC----------KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFT 620 (1238)
T ss_pred HHhhhchHHHH----------HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhh
Confidence 55555554433 33577777788888999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh-hhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 885 LAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAG-AFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAS 963 (1278)
Q Consensus 885 ~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~-~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 963 (1278)
++....|.+.-..+..+.++...|.+.+|+..+...+.... .....-.-.+.+...+..+...|-..+|...+++.++.
T Consensus 621 kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 621 KASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred hhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999988889999999999999999999988874321 11111223344445555555555556666666665543
Q ss_pred CC---------CHHHHHHHHHHHHH---c--------------------CCH------HHHHHHHHHHHHhCCChHHHHH
Q psy3224 964 AP---------TPRVMIQSAKLEWC---L--------------------DNL------ERALQLLDEAIKVFPDFAKLWM 1005 (1278)
Q Consensus 964 ~p---------~~~~~~~la~~~~~---~--------------------g~~------~~A~~~l~~al~~~p~~~~~~~ 1005 (1278)
+- +...|..++..++. . +.. --+.+++-..++..-. +..|+
T Consensus 701 f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~-~~~Wy 779 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIH-MYPWY 779 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhc-cchHH
Confidence 21 12333333322111 0 000 1122222222222222 45667
Q ss_pred HHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 1006 MKGQIEEQ--------KNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIR 1077 (1278)
Q Consensus 1006 ~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~ 1077 (1278)
++|.-|.+ ..+-..|+.++.++++++.++...|..+|.+ ...|++.-|...|-+.+..+|.+...|.+++.
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~Nlgv 858 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGV 858 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccce
Confidence 77665544 1233467778888888888777788887776 55577777888888888888887778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHh-ccCcchhhhhhhhhhhhcccccccc--
Q psy3224 1078 VEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKC-EHDPHVLLAVSKLFWCENKNQKCHR-- 1154 (1278)
Q Consensus 1078 ~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~-~~~p~~~~~~~~l~~~~~~~~~A~~-- 1154 (1278)
++.+..+++.|...|.++..+.|.+...|...+.+....|+.-++...+... .............+|........-.
T Consensus 859 L~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 859 LVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred eEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence 7777888888888888888888888777777777777777776666666653 1000000011111221111100000
Q ss_pred ----cCcccccc-ccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------CCCChhHHHHHHHHHH
Q psy3224 1155 ----SGSRRCMG-VKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKI------DPDLGDAWAYFYKFEI 1223 (1278)
Q Consensus 1155 ----~~~~~~~~-~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~------~P~~~d~~~~l~~~~~ 1223 (1278)
........ ........+..+|+..-++...|....+++.+..|.+.+.+++.+ ..++..+-..+++++.
T Consensus 939 ~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~l 1018 (1238)
T KOG1127|consen 939 IEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLEL 1018 (1238)
T ss_pred hHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhh
Confidence 00000011 111112334678888888888888888888888888888887652 1222224445555555
Q ss_pred HhCCHHHH
Q psy3224 1224 INGTEETQ 1231 (1278)
Q Consensus 1224 ~~G~~~~A 1231 (1278)
..|+++.|
T Consensus 1019 slgefe~A 1026 (1238)
T KOG1127|consen 1019 SLGEFESA 1026 (1238)
T ss_pred hhcchhhH
Confidence 55555544
No 30
>KOG0547|consensus
Probab=99.93 E-value=1e-22 Score=223.92 Aligned_cols=434 Identities=15% Similarity=0.140 Sum_probs=308.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHH
Q psy3224 748 TWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKS 827 (1278)
Q Consensus 748 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~ 827 (1278)
.+-..|+-++..|+|++|+++|.+++..+|+.+..+.+.+.+|...|++++.++...++++++|+...
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~K------------ 184 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVK------------ 184 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHH------------
Confidence 44456777889999999999999999999998889999999999999999977777777777777643
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHH--HHH
Q psy3224 828 IWLRAAYFEKNHGTRESLETLLQKAVAHCP--KSEVLWLMGAKSKWLAGDVPAARGILSLAFQ--ANPNSEEIWL--AAV 901 (1278)
Q Consensus 828 ~~l~~a~l~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~l~~al~--~~p~~~~~~~--~la 901 (1278)
++++.+..+...|++++|+.-..- +.++. ++...-.++-+++-. .|+.-.+..++ ..|.-+..-+ .+-
T Consensus 185 Al~RRA~A~E~lg~~~eal~D~tv-~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf 258 (606)
T KOG0547|consen 185 ALLRRASAHEQLGKFDEALFDVTV-LCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYF 258 (606)
T ss_pred HHHHHHHHHHhhccHHHHHHhhhH-HHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 455555556666666666543321 11111 122222222222222 23333333333 1122111111 111
Q ss_pred HHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHH-HHHHHHHHH-cCCHHHHHHHHHHHHHhC-----CC--------
Q psy3224 902 KLESENNEYERARRLLAKARAQAGAFQANPNSEEIW-LAAVKLESE-NNEYERARRLLAKARASA-----PT-------- 966 (1278)
Q Consensus 902 ~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~-~~la~~~~~-~g~~~~A~~~l~~al~~~-----p~-------- 966 (1278)
..... ++... .....+...... ..+-.++.. ...|..|...+.+..... -+
T Consensus 259 ~sF~~--~~~~~------------~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~ 324 (606)
T KOG0547|consen 259 GSFHA--DPKPL------------FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEY 324 (606)
T ss_pred hhccc--ccccc------------ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHH
Confidence 11000 00000 000111111111 122222222 225677777766655432 11
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy3224 967 -PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLE 1045 (1278)
Q Consensus 967 -~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~ 1045 (1278)
...+...|.+++..|+.-.|...|+.++.++|.+..+|+.++.+|...++.++-...|.++..++|.++.+|+..|++.
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 4566667778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHH
Q psy3224 1046 ERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDA 1125 (1278)
Q Consensus 1046 ~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~ 1125 (1278)
.-.+++++|+.-|++++.++|++...+..++.++++.+.++++...|+.+...+|+.++++...+.++...+++++|++.
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~ 484 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQ 484 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHh-ccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy3224 1126 LKKC-EHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRT 1204 (1278)
Q Consensus 1126 l~k~-~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~ka 1204 (1278)
|.++ ...|.....+-+. -|.+.-.+..+-|. +++..|.+++++|
T Consensus 485 YD~ai~LE~~~~~~~v~~----------------------------------~plV~Ka~l~~qwk-~d~~~a~~Ll~KA 529 (606)
T KOG0547|consen 485 YDKAIELEPREHLIIVNA----------------------------------APLVHKALLVLQWK-EDINQAENLLRKA 529 (606)
T ss_pred HHHHHhhccccccccccc----------------------------------hhhhhhhHhhhchh-hhHHHHHHHHHHH
Confidence 9998 3333300000000 01122233333354 8999999999999
Q ss_pred HhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcch
Q psy3224 1205 VKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGEN 1248 (1278)
Q Consensus 1205 l~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~ 1248 (1278)
++++|....++..+++++.+.|+.++|.++++++..+.....+.
T Consensus 530 ~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~~E~ 573 (606)
T KOG0547|consen 530 IELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTESEM 573 (606)
T ss_pred HccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999999999999999876554433
No 31
>KOG2076|consensus
Probab=99.92 E-value=4.7e-20 Score=217.72 Aligned_cols=656 Identities=15% Similarity=0.094 Sum_probs=434.6
Q ss_pred HHhHHHHHhHhhhhhhhccCCCcCCCcCChhhhHhhhhccCCCcccccchHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q psy3224 447 RKMGQARNTLMNVKLNQISDSVVGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEE 526 (1278)
Q Consensus 447 ~di~kar~~l~~~~l~~~~~sv~~~~~~~~~g~ia~a~~~l~~~~~~~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~ 526 (1278)
|++.+|-..+. .|+.++|.++.+|-+.+.. +++.||++++....--+--++|++.+-|...+.+..
T Consensus 153 g~~eeA~~i~~---------EvIkqdp~~~~ay~tL~~I-----yEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 153 GDLEEAEEILM---------EVIKQDPRNPIAYYTLGEI-----YEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred CCHHHHHHHHH---------HHHHhCccchhhHHHHHHH-----HHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 68888888884 4889999999999875555 999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHhcCCCHHHHHHHHhc----CCchHHHHHHHHHHHhCCCCHHHHHHHH-----Hch---hhHHH
Q psy3224 527 VTGKVQAARNLIMKGCEENQTSEDLWLEAARL----QPVDTARAVIAQAVRHIPTSVRIWIKAA-----DLE---TETKA 594 (1278)
Q Consensus 527 ~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~L----~~~~~A~~~l~kaL~~~P~s~~lw~~~~-----~le---~~~~~ 594 (1278)
.+|++..|+-+|.+||+.+|.+.+.....+.| +....|...|.++++.+|...-.|.... ... .+.+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999999887777664 4667788999999999995443333211 111 12355
Q ss_pred HHHHHHHHHHhCCCCH-----H-HHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Q psy3224 595 KRRVYRKALEHIPNSV-----R-LWKAAVELEDPEDARILLSRAVECC-PTSVELWLALARLETYENARKVLNKARENIP 667 (1278)
Q Consensus 595 A~~ll~rAle~~P~s~-----~-Lw~al~~l~~~e~A~~~l~kal~~~-P~~~~~w~~la~l~~~~~A~~~l~~al~~~p 667 (1278)
|...++.++...-.-+ + +...++....++.|........... -.+..-|...-+-..... .+++.- ...+
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~--~~~~~~-~~~s 375 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN--ALCEVG-KELS 375 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc--ccccCC-CCCC
Confidence 5666666665221111 2 2233455556666666555544311 111122221111000000 000000 0011
Q ss_pred CCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchH
Q psy3224 668 TDRQI-WTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRK 746 (1278)
Q Consensus 668 ~~~~~-~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~ 746 (1278)
.+..+ .+.++.+.++.++..++...+ .... +..+......++..+..+...|.+..|...+..+...... .+.
T Consensus 376 ~~l~v~rl~icL~~L~~~e~~e~ll~~--l~~~--n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~--~~~ 449 (895)
T KOG2076|consen 376 YDLRVIRLMICLVHLKERELLEALLHF--LVED--NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY--QNA 449 (895)
T ss_pred ccchhHhHhhhhhcccccchHHHHHHH--HHHh--cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc--cch
Confidence 12223 444555555555544443333 3322 1112345667888899999999999999988888775433 236
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchH
Q psy3224 747 HTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKK 826 (1278)
Q Consensus 747 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~ 826 (1278)
.+|+.+|.+|...|.++.|+..|++++...|.+.++...++.++.+.|+.++|.+.++....-++.+.. ..+.....
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e---~~a~~~e~ 526 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAE---ACAWEPER 526 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchh---hccccHHH
Confidence 799999999999999999999999999999999999999999999999999999999987733332211 01111223
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh-------CCCcH----------------HHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 827 SIWLRAAYFEKNHGTRESLETLLQKAVAH-------CPKSE----------------VLWLMGAKSKWLAGDVPAARGIL 883 (1278)
Q Consensus 827 ~~~l~~a~l~~~~g~~~~A~~~~~~al~~-------~P~~~----------------~~~~~la~~~~~~g~~~~A~~~l 883 (1278)
.+......++.+.|+.++=+.....++.. +|.+. .........-...++.......+
T Consensus 527 ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l 606 (895)
T KOG2076|consen 527 RILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKAL 606 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcc
Confidence 44555566667777766654444444331 22211 11111111111222211111111
Q ss_pred H-----HHHHhCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcH-HHHHHHHHHHHHcCCHHHH
Q psy3224 884 S-----LAFQANPNSE----EIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSE-EIWLAAVKLESENNEYERA 953 (1278)
Q Consensus 884 ~-----~al~~~p~~~----~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~-~~~~~la~~~~~~g~~~~A 953 (1278)
. .+.....-+. +++..++....+.+.+++|..+...++.... +-..+.-. .+-.....+.+..+++..|
T Consensus 607 ~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~-f~~~~~~~k~l~~~~l~~s~~~~d~~~a 685 (895)
T KOG2076|consen 607 SDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYI-FFQDSEIRKELQFLGLKASLYARDPGDA 685 (895)
T ss_pred cchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh-hhccHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 1 1111111122 3445666778889999999999998874321 01111111 2333344456688999999
Q ss_pred HHHHHHHHHh-----CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 954 RRLLAKARAS-----APT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF-AKLWMMKGQIEEQKNLLDKAHDTFSQ 1026 (1278)
Q Consensus 954 ~~~l~~al~~-----~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 1026 (1278)
..++..++.. .|. ..+|...-.+....++-.--...+.+++...|++ +...+..|..+...+.+..|+..|-+
T Consensus 686 ~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~r 765 (895)
T KOG2076|consen 686 FSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMR 765 (895)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHH
Confidence 9999999988 443 4566644445555555555566667777778876 77888899999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHH--cC--------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 1027 AIKKCPHSVPLWIMLANLEER--RK--------MLIKARSVLEKGRLRNPN--CAELWLAAIRVEIRAGLKDIANTMMAK 1094 (1278)
Q Consensus 1027 al~~~p~~~~~~~~la~l~~~--~g--------~~~~A~~~l~kal~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~k 1094 (1278)
+...+|++|-+-+.+|..+.. .+ ..-+++.++.+..++-.. ..++.+++|++|...|-..-|+.+|++
T Consensus 766 a~~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYek 845 (895)
T KOG2076|consen 766 AFRQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEK 845 (895)
T ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 999999998777766655543 11 234667777777666544 668899999999999999999999999
Q ss_pred HHHHCCCcH------------HHHHHHHhccCCCCChhHHHHHHHHh
Q psy3224 1095 ALQECPNAG------------ILWAEAIFLEPRPQRKTKSVDALKKC 1129 (1278)
Q Consensus 1095 al~~~P~~~------------~~~~~~~~~~~~~~~~~~A~~~l~k~ 1129 (1278)
+|...|.+. .+-+++..+|..+|+...|.+++.+.
T Consensus 846 vL~~~p~~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ky 892 (895)
T KOG2076|consen 846 VLEVSPKDVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEKY 892 (895)
T ss_pred HhCCCccccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHhh
Confidence 999976532 56667888899999999999988764
No 32
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.92 E-value=2e-19 Score=231.57 Aligned_cols=482 Identities=15% Similarity=0.116 Sum_probs=362.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HH----HHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy3224 611 RLWKAAVELEDPEDARILLSRAVECCPTSV--EL----WLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHG 684 (1278)
Q Consensus 611 ~Lw~al~~l~~~e~A~~~l~kal~~~P~~~--~~----w~~la~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 684 (1278)
.++..+++.|++++|+.+|+.+.+...-.+ -. +..+.+.+..++|..+|..... | +...|..+...|.+.|
T Consensus 375 ~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCc
Confidence 455567777889999999998877643222 11 2234566888889888876654 5 6788888889999999
Q ss_pred CHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHH
Q psy3224 685 NNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYEC 764 (1278)
Q Consensus 685 ~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~ 764 (1278)
+++.|..++..+.+. +..++...|...+..|.+.|+++.|..++..+...+..+ +...|..+...|.+.|++++
T Consensus 452 ~~e~A~~lf~~M~~~----Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P--dvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 452 DIDGALRVLRLVQEA----GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA--NVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred CHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCcCHHH
Confidence 999999999888764 666778888888999999999999999999988766543 36788889999999999999
Q ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCchHHHHHhhcccchHHHHHHHHHHHHhc
Q psy3224 765 ARAIYAQALATF-PSKKSIWLRAAYFEKNHGTRESLETLLQKAVAH----CPKSEVLWLMGAKSNKKSIWLRAAYFEKNH 839 (1278)
Q Consensus 765 A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~ 839 (1278)
|..+|.++.... ..+...|..++..+.+.|++++|..+|..+... .|+.. .|...+..+...
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v-------------TynaLI~ay~k~ 592 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-------------TVGALMKACANA 592 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH-------------HHHHHHHHHHHC
Confidence 999999887654 236778899999999999999999999888753 34432 455666677788
Q ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCcHHHHHHH
Q psy3224 840 GTRESLETLLQKAVAHC-PKSEVLWLMGAKSKWLAGDVPAARGILSLAFQA--NPNSEEIWLAAVKLESENNEYERARRL 916 (1278)
Q Consensus 840 g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~la~l~~~~g~~~~A~~~ 916 (1278)
|++++|..+|+.+.+.. +.+...|..+...|.+.|++++|..+|....+. .| +...|..++..+.+.|++++|..+
T Consensus 593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l 671 (1060)
T PLN03218 593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEI 671 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHH
Confidence 89999999999888875 456678888889999999999999999988876 45 477888888889999999999999
Q ss_pred HHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 917 LAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAS--APTPRVMIQSAKLEWCLDNLERALQLLDEAI 994 (1278)
Q Consensus 917 l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~al 994 (1278)
+..+.. ...+.+...|..++..|.+.|++++|..+|+.+... .|+...|..++..|...|++++|..+|+++.
T Consensus 672 ~~eM~k-----~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 672 LQDARK-----QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHH-----cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 998872 234567788889999999999999999999988764 5778889999999999999999999999877
Q ss_pred Hh--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 995 KV--FPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH-SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 995 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
.. .|+ ...|..+...+.+.|+++.|..+|..+++.... +..++..+..++. +.+++|....+..+..++.+..
T Consensus 747 ~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g~~~- 822 (1060)
T PLN03218 747 RLGLCPN-TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSGRPQ- 822 (1060)
T ss_pred HcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhccccc-
Confidence 63 455 566777778888999999999999998875422 3445555544432 3566666666555544432221
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHhccCCCCChhHHHHHHHHhccCc
Q psy3224 1072 WLAAIRVEIRAGLKDIANTMMAKALQEC--PNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDP 1133 (1278)
Q Consensus 1072 ~~~l~~~~~~~g~~~~A~~~~~kal~~~--P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p 1133 (1278)
...+..+.|..+|+++++.- |+ ...+..++.++...+....+...++.+...|
T Consensus 823 --------~~n~w~~~Al~lf~eM~~~Gi~Pd-~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 823 --------IENKWTSWALMVYRETISAGTLPT-MEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred --------cccchHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 11223456888888888753 44 3444555555666777777777776664333
No 33
>KOG0547|consensus
Probab=99.91 E-value=2.3e-21 Score=213.32 Aligned_cols=378 Identities=17% Similarity=0.192 Sum_probs=277.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy3224 715 EAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHG 794 (1278)
Q Consensus 715 ~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g 794 (1278)
.+..+.+.|.++.|...|..++...++. +..|...+-+|...|++++.++...++++++|....+++..+..+...|
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l~p~e---piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIELCPDE---PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhcCCCC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 3444555666666666666666665554 2366777888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHH------------------HH------------H--hCCchHHHHHhh---------------cccchHH
Q psy3224 795 TRESLETLLQK------------------AV------------A--HCPKSEVLWLMG---------------AKSNKKS 827 (1278)
Q Consensus 795 ~~~~A~~~l~~------------------al------------~--~~p~~~~~~~~~---------------~~~~~~~ 827 (1278)
++.+|..-+.- .+ . ..|.-+..-++. .+....+
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 88776543211 11 0 000000000000 0011111
Q ss_pred HHHHHHH--HHH-hcCCHHHHHHHHHHHHHhC---C-Cc---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 828 IWLRAAY--FEK-NHGTRESLETLLQKAVAHC---P-KS---------EVLWLMGAKSKWLAGDVPAARGILSLAFQANP 891 (1278)
Q Consensus 828 ~~l~~a~--l~~-~~g~~~~A~~~~~~al~~~---P-~~---------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 891 (1278)
.-+.-+. ++. ....|..|...+.+..... + .+ ..+++..|.+++-.|+.-.|...|..++.++|
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 1111111 111 1224555655555443321 1 12 45667777788888999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHH
Q psy3224 892 NSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVM 970 (1278)
Q Consensus 892 ~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~ 970 (1278)
....+|+.++.+|...++..+....|.++. ..+|.++.+|+..|+++.-.+++++|+.-|++++.++|+ ...+
T Consensus 358 ~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~------~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 358 AFNSLYIKRAAAYADENQSEKMWKDFNKAE------DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred ccchHHHHHHHHHhhhhccHHHHHHHHHHH------hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 888889999999999999999999999987 889999999999999999999999999999999999886 4778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHH--
Q psy3224 971 IQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH------SVPLWIMLA-- 1042 (1278)
Q Consensus 971 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la-- 1042 (1278)
..++.++++++.++++...|+.+.+.+|++++++...|+++..+++|++|.+.|..++.+.|. ++..+..-|
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 888888888889999999999999999999999999999999999999999999999999887 444444333
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Q psy3224 1043 NLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNA 1102 (1278)
Q Consensus 1043 ~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~ 1102 (1278)
.+.+ .+++..|..++++|++++|....++..++.+..+.|+.++|+++|+++..+.-..
T Consensus 512 ~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 512 VLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLARTE 570 (606)
T ss_pred hhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhH
Confidence 3333 3888999999999999999998888999999999999999999999887765443
No 34
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.91 E-value=2e-18 Score=222.39 Aligned_cols=466 Identities=11% Similarity=0.066 Sum_probs=358.7
Q ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 623 EDARILLSRAVECCPT---SVELWLALARLETYENARKVLNKARENIP--TDRQIWTTAAKLEEAHGNNAMVDKIIDRAL 697 (1278)
Q Consensus 623 e~A~~~l~kal~~~P~---~~~~w~~la~l~~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~il~~al 697 (1278)
..+...++......++ ...++..+++.|++++|..+|+.+.+... .+...+..+...+.+.|....|..+++.+.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~ 433 (1060)
T PLN03218 354 ENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433 (1060)
T ss_pred hhhHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 3344444444444333 33344556677999999999999887653 344455567778889999999998887654
Q ss_pred HhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 698 SSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFP 777 (1278)
Q Consensus 698 ~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 777 (1278)
.++...|......|...|+++.|..++..+...+..+ +..+|..+...|.+.|+++.|..+|+++.....
T Consensus 434 --------~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~p--D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv 503 (1060)
T PLN03218 434 --------NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKA--DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV 503 (1060)
T ss_pred --------CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC
Confidence 2566789999999999999999999999999877653 367899999999999999999999999998754
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy3224 778 -SKKSIWLRAAYFEKNHGTRESLETLLQKAVAHC--PKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVA 854 (1278)
Q Consensus 778 -~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~ 854 (1278)
.+...|..++..|.+.|++++|..+|..+.... |+. ..|...+..+...|++++|..+|.++..
T Consensus 504 ~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~-------------vTYnsLI~a~~k~G~~deA~~lf~eM~~ 570 (1060)
T PLN03218 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR-------------VVFNALISACGQSGAVDRAFDVLAEMKA 570 (1060)
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH-------------HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 378899999999999999999999999987653 332 2577777778888999999999999876
Q ss_pred h----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhc
Q psy3224 855 H----CPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQAN-PNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQA 929 (1278)
Q Consensus 855 ~----~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~ 929 (1278)
. .|+ ...|..+...|.+.|++++|.++|+.+.+.. +.+...|..++..+.+.|++++|..+|..+.. ..
T Consensus 571 ~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~-----~G 644 (1060)
T PLN03218 571 ETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK-----KG 644 (1060)
T ss_pred hcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cC
Confidence 3 344 5678888889999999999999999998876 34678899999999999999999999999862 22
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHH
Q psy3224 930 NPNSEEIWLAAVKLESENNEYERARRLLAKARAS--APTPRVMIQSAKLEWCLDNLERALQLLDEAIKV--FPDFAKLWM 1005 (1278)
Q Consensus 930 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~ 1005 (1278)
...+...|..++..+.+.|++++|..++..+.+. .|+...|..++..|...|++++|..+|+++... .|+ ...|.
T Consensus 645 v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN 723 (1060)
T PLN03218 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMN 723 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHH
Confidence 2345778889999999999999999999999886 467789999999999999999999999988653 454 67899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Q psy3224 1006 MKGQIEEQKNLLDKAHDTFSQAIKK--CPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNP-NCAELWLAAIRVEIRA 1082 (1278)
Q Consensus 1006 ~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p-~~~~~~~~l~~~~~~~ 1082 (1278)
.++..|.+.|++++|.++|.++... .| +...|..+...+.+.|++++|..+|.++++... .+...+..+..++.
T Consensus 724 ~LI~gy~k~G~~eeAlelf~eM~~~Gi~P-d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~-- 800 (1060)
T PLN03218 724 ALITALCEGNQLPKALEVLSEMKRLGLCP-NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL-- 800 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--
Confidence 9999999999999999999988754 34 566778888889999999999999999987543 23344444444432
Q ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhc
Q psy3224 1083 GLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCE 1130 (1278)
Q Consensus 1083 g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~ 1130 (1278)
+++++|.......+..++. ...........|+.+|+++.
T Consensus 801 ~~y~ka~~l~~~v~~f~~g---------~~~~~n~w~~~Al~lf~eM~ 839 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSG---------RPQIENKWTSWALMVYRETI 839 (1060)
T ss_pred HHHHHHhhhhhhhhhhhcc---------ccccccchHHHHHHHHHHHH
Confidence 3456666555544433221 11122234456888888873
No 35
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=6.2e-20 Score=229.99 Aligned_cols=446 Identities=10% Similarity=-0.033 Sum_probs=345.4
Q ss_pred cchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcc
Q psy3224 743 EDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAK 822 (1278)
Q Consensus 743 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~ 822 (1278)
+......+..+....++|+++.|+..|+++++.+|.+......++.++...|+.++|+..+++++...|...
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~-------- 102 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISS-------- 102 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCH--------
Confidence 334557778888899999999999999999999999964444888888899999999999999993333332
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 823 SNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVK 902 (1278)
Q Consensus 823 ~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 902 (1278)
......+.++...|++++|+.+|+++++.+|+++.++..++.++...++.++|+..++++...+|..... ..++.
T Consensus 103 ----~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~lay 177 (822)
T PRK14574 103 ----RGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSY 177 (822)
T ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHH
Confidence 2344456688889999999999999999999999999999999999999999999999999999985443 66677
Q ss_pred HHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH--
Q psy3224 903 LESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAP-TPRVMIQSAKLEWC-- 979 (1278)
Q Consensus 903 l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~la~~~~~-- 979 (1278)
++...++..+|+..+++++ ..+|.+..++..+..++...|-...|.++..+--.... ....|+....+-..
T Consensus 178 L~~~~~~~~~AL~~~ekll------~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr 251 (822)
T PRK14574 178 LNRATDRNYDALQASSEAV------RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVR 251 (822)
T ss_pred HHHhcchHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHh
Confidence 7767788877999999998 88999999999999999999999888877665333221 12333332221111
Q ss_pred c---------C---CHHHHHHHHHHHHHhCCChH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH
Q psy3224 980 L---------D---NLERALQLLDEAIKVFPDFA-------KLWMMKGQIEEQKNLLDKAHDTFSQAIKKC-PHSVPLWI 1039 (1278)
Q Consensus 980 ~---------g---~~~~A~~~l~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 1039 (1278)
. . -.+.|+..++..+...+..| .+..-...++...+++.+++..|+.+.... |-...+..
T Consensus 252 ~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 252 MAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred hcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 1 1 24567777788787444322 222334445678899999999999876443 22345677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC----C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------
Q psy3224 1040 MLANLEERRKMLIKARSVLEKGRLRNP----N--CAELWLAAIRVEIRAGLKDIANTMMAKALQECPN------------ 1101 (1278)
Q Consensus 1040 ~la~l~~~~g~~~~A~~~l~kal~~~p----~--~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~------------ 1101 (1278)
.+|..|...+.+++|..+|.+++...| . +......+...+...+++++|..++.+..+..|.
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 889999999999999999999988653 1 2222466777888999999999999999886551
Q ss_pred ---cHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCH
Q psy3224 1102 ---AGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDP 1178 (1278)
Q Consensus 1102 ---~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~ 1178 (1278)
-..+....+..+...|+..+|.+.+++. +...|.|+
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l-----------------------------------------~~~aP~n~ 450 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDL-----------------------------------------SSTAPANQ 450 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------------------------HHhCCCCH
Confidence 1234444555556667777776666654 24567788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcch
Q psy3224 1179 HVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGEN 1248 (1278)
Q Consensus 1179 ~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~ 1248 (1278)
.++..+|.++...|.+..|..+++.++.++|++..+....+.....+|++.+|..+.+++++..|+++..
T Consensus 451 ~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 451 NLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 8999999999999999999999999999999999999999999999999999999999999999998843
No 36
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.90 E-value=6.6e-20 Score=234.63 Aligned_cols=438 Identities=14% Similarity=0.109 Sum_probs=299.5
Q ss_pred hHHHHHHHHHHHHHhCC---CCH---HHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHH----HHHHHhcCHHHHHHH
Q psy3224 591 ETKAKRRVYRKALEHIP---NSV---RLWKAAVELEDPEDARILLSRAVEC--CPTSVELW----LALARLETYENARKV 658 (1278)
Q Consensus 591 ~~~~A~~ll~rAle~~P---~s~---~Lw~al~~l~~~e~A~~~l~kal~~--~P~~~~~w----~~la~l~~~~~A~~~ 658 (1278)
...+|..+|+.+....| +.. .+..++.+.++++.|..++..+++. .| +...+ ..|++.++++.|.++
T Consensus 102 ~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~l 180 (697)
T PLN03081 102 RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRL 180 (697)
T ss_pred CHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHH
Confidence 45556666665554321 111 2334455555666666666665553 23 22222 234445666666666
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q psy3224 659 LNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGY 738 (1278)
Q Consensus 659 l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~ 738 (1278)
|++..+ | +...|..+...+.+.|++++|..+|+++... +..++..++......+...|....+..++..++..
T Consensus 181 f~~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~----g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~ 253 (697)
T PLN03081 181 FDEMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWED----GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT 253 (697)
T ss_pred HhcCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh----CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 665432 2 4455666666666666666666666666543 33444555555555566666666666665555554
Q ss_pred CCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Q psy3224 739 GVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWL 818 (1278)
Q Consensus 739 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 818 (1278)
+..+ +..++..+...|.+.|++++|..+|++.. +.+...|..++..|.+.|+.++
T Consensus 254 g~~~--d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~e-------------------- 308 (697)
T PLN03081 254 GVVG--DTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEE-------------------- 308 (697)
T ss_pred CCCc--cceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHH--------------------
Confidence 4332 13455555556666666666666555442 2344455555555555555555
Q ss_pred hhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Q psy3224 819 MGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHC-PKSEVLWLMGAKSKWLAGDVPAARGILSLAFQAN-PNSEEI 896 (1278)
Q Consensus 819 ~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~ 896 (1278)
|+.+|+++.... ..+...+..+...+...|++++|.+++..+++.. +.+..+
T Consensus 309 --------------------------A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~ 362 (697)
T PLN03081 309 --------------------------ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362 (697)
T ss_pred --------------------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeee
Confidence 555555554431 2234567778888888999999999999888875 446778
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHHHHHHHH
Q psy3224 897 WLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAS--APTPRVMIQSA 974 (1278)
Q Consensus 897 ~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~la 974 (1278)
+..++..|.+.|++++|..+|+++. . .+...|..++..|.+.|+.++|+.+|+++... .|+...+..+.
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~--------~-~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMP--------R-KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCC--------C-CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 8889999999999999999998763 2 36678999999999999999999999998875 57788888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy3224 975 KLEWCLDNLERALQLLDEAIKVFP--DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLI 1052 (1278)
Q Consensus 975 ~~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~ 1052 (1278)
..+...|..++|..+|+.+.+..+ -+...|..++.++.+.|++++|.+++++. ...| +..+|..+...+...|+++
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLE 511 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcH
Confidence 889999999999999999886433 22567888889999999999999988764 2334 4668889988899999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy3224 1053 KARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQE 1098 (1278)
Q Consensus 1053 ~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~ 1098 (1278)
.|...+++++...|++...|..++.+|...|++++|.++++.+.+.
T Consensus 512 ~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 512 LGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999999999988888888899999999999999999888665
No 37
>KOG1173|consensus
Probab=99.90 E-value=4e-20 Score=207.89 Aligned_cols=477 Identities=13% Similarity=0.069 Sum_probs=351.4
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy3224 710 EHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYF 789 (1278)
Q Consensus 710 ~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~ 789 (1278)
.......+.+.....+.+|.-+-..+.....+ +.-.+-+|+++...+++..|..+...- .....+......++.+
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~d----p~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLTND----PADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKC 91 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhccCC----hHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHH
Confidence 33444444556666778888888888776633 234556789999999999888877665 5555677788888999
Q ss_pred HHHcCCHHHHHHHHHHH------HHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--cHH
Q psy3224 790 EKNHGTRESLETLLQKA------VAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPK--SEV 861 (1278)
Q Consensus 790 ~~~~g~~~~A~~~l~~a------l~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~--~~~ 861 (1278)
+....++++|..++.+. +...|.+. +......+ +-...+. ...
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~------------------~~~l~~n~-----------~~~~~~~~~ess 142 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDA------------------ANTLELNS-----------AGEDLMINLESS 142 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhh------------------hceeccCc-----------ccccccccchhc
Confidence 99999999999888754 11111110 00000000 0011111 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-----------------cHHHH-HHHHHHHHHh
Q psy3224 862 LWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENN-----------------EYERA-RRLLAKARAQ 923 (1278)
Q Consensus 862 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g-----------------~~~~A-~~~l~~al~~ 923 (1278)
+.+..|++|....+.++|+..|.+|+..++.+.+++..+...+.-.. ...+- ...|+-....
T Consensus 143 ic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k 222 (611)
T KOG1173|consen 143 ICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCK 222 (611)
T ss_pred eeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhh
Confidence 34455666666666666666666666666555444433332211110 00000 1111100000
Q ss_pred h-----------hhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 924 A-----------GAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLD 991 (1278)
Q Consensus 924 ~-----------~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~ 991 (1278)
. ..+..-..+..+....+..+...+++.+..++++..+..+|- +..+.....++...|+..+-..+-.
T Consensus 223 ~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh 302 (611)
T KOG1173|consen 223 NRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSH 302 (611)
T ss_pred hccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHH
Confidence 0 011222356778888899999999999999999999999884 3433333447888899888888889
Q ss_pred HHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 992 EAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 992 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
+.+..+|+.+..|+..|..|...|++.+|+.+|.++..++|..+.+|..+|..+...+..++|+..|..|-++.|.....
T Consensus 303 ~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP 382 (611)
T KOG1173|consen 303 KLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP 382 (611)
T ss_pred HHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhc-cCcchhhhhhhhhhhhcccc
Q psy3224 1072 WLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCE-HDPHVLLAVSKLFWCENKNQ 1150 (1278)
Q Consensus 1072 ~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~-~~p~~~~~~~~l~~~~~~~~ 1150 (1278)
.+.++.=+.+.++++-|...|.+|+.++|+++.+...++.+....+.+.+|...|+.+. .-+.+. -....|
T Consensus 383 ~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~--~e~~~w------ 454 (611)
T KOG1173|consen 383 SLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL--NEKIFW------ 454 (611)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc--ccccch------
Confidence 78888888889999999999999999999999999999999999999999999998874 111100 000012
Q ss_pred cccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHH
Q psy3224 1151 KCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEET 1230 (1278)
Q Consensus 1151 ~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~ 1230 (1278)
...+.+||.++.+.+.++.|+.+|+++|.+.|.+.+++..++-++..+|+.+.
T Consensus 455 ---------------------------~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 455 ---------------------------EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred ---------------------------hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHH
Confidence 23789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCcchhhhhhhc
Q psy3224 1231 QAEVKKRCLAAEPKHGENWCRVAKN 1255 (1278)
Q Consensus 1231 A~~~l~ka~~~~P~~~~~w~~~~k~ 1255 (1278)
|.+.+.+++.+.|++..+-.=+.+-
T Consensus 508 Aid~fhKaL~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 508 AIDHFHKALALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHH
Confidence 9999999999999986554444443
No 38
>KOG1155|consensus
Probab=99.89 E-value=1.6e-19 Score=198.05 Aligned_cols=371 Identities=14% Similarity=0.123 Sum_probs=235.6
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccch
Q psy3224 746 KHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNK 825 (1278)
Q Consensus 746 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~ 825 (1278)
.-.++..|.++.+.|....|+..|..++...|-+-.+|+.+..+.... ..+...+...|.+.
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~-------e~~~~l~~~l~~~~----------- 225 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI-------EILSILVVGLPSDM----------- 225 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH-------HHHHHHHhcCcccc-----------
Confidence 346677789999999999999999999999999999999887765322 12222222222211
Q ss_pred HHHHHH---HHHHHHhcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy3224 826 KSIWLR---AAYFEKNHGTRESLETLLQKAVAH-CPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAV 901 (1278)
Q Consensus 826 ~~~~l~---~a~l~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 901 (1278)
.|+. ....+......++++.-++..+.. +|.+..+-...|.+...+.++++|+..|+..++.+|-...-.-.+.
T Consensus 226 --h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlyS 303 (559)
T KOG1155|consen 226 --HWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYS 303 (559)
T ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHh
Confidence 1221 112222333555566666666665 6666666666666666667777777777777766665444333333
Q ss_pred HHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHc
Q psy3224 902 KLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAP-TPRVMIQSAKLEWCL 980 (1278)
Q Consensus 902 ~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~la~~~~~~ 980 (1278)
.++. -.++-.+-.-+.+.+...+. .++.....|+.|...
T Consensus 304 N~LY----------------------------------------v~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr 343 (559)
T KOG1155|consen 304 NVLY----------------------------------------VKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLR 343 (559)
T ss_pred HHHH----------------------------------------HHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHH
Confidence 3333 22221121122222222322 245555556666666
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 981 DNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEK 1060 (1278)
Q Consensus 981 g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~k 1060 (1278)
++.++|+.+|+++++++|....+|..+|.=|..+.+...|++.|++|++.||.+..+|+.+|+.|.-++...=|+-+|++
T Consensus 344 ~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhh
Q psy3224 1061 GRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVS 1140 (1278)
Q Consensus 1061 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~ 1140 (1278)
|+..-|+++.+|..+|.+|.+.++.++|+..|.+++.....++.++..++.++.+.++.++|...|+++......
T Consensus 424 A~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~----- 498 (559)
T KOG1155|consen 424 ALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSEL----- 498 (559)
T ss_pred HHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-----
Confidence 777777777777777777777777777777777777766666667777777777777777777777666321110
Q ss_pred hhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy3224 1141 KLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPD 1210 (1278)
Q Consensus 1141 ~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 1210 (1278)
.+ +..|+-..+...||..|.+.+++++|-.+..+++.-++.
T Consensus 499 -----eg------------------------~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 499 -----EG------------------------EIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred -----hc------------------------ccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 00 001111225666899999999999999999888876554
No 39
>KOG1127|consensus
Probab=99.89 E-value=3.6e-18 Score=201.81 Aligned_cols=636 Identities=14% Similarity=0.110 Sum_probs=438.6
Q ss_pred CchHHHHHHHHHHHhCCCCHHHHHHHHHchh---hHHHHHHHHHHHHHhCCCCHHHHHH----HHhcCCHHHHHHHHHHH
Q psy3224 560 PVDTARAVIAQAVRHIPTSVRIWIKAADLET---ETKAKRRVYRKALEHIPNSVRLWKA----AVELEDPEDARILLSRA 632 (1278)
Q Consensus 560 ~~~~A~~~l~kaL~~~P~s~~lw~~~~~le~---~~~~A~~ll~rAle~~P~s~~Lw~a----l~~l~~~e~A~~~l~ka 632 (1278)
+...|...|-+++..+|+-...|.-++..+. +...|+.+|.+|.+++|..++.|.+ |++..+++.|..+.-++
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 3445778899999999999999998888776 4567999999999999999988876 66777999999987777
Q ss_pred HHhCCCCHHH--HHH----HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCcc
Q psy3224 633 VECCPTSVEL--WLA----LARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVE 706 (1278)
Q Consensus 633 l~~~P~~~~~--w~~----la~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~ 706 (1278)
-+..|-.... |.. +.+-++...|+..|+.+++.+|.+...|..++++|...|.+..|.++|.++....|.+
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s--- 629 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLS--- 629 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHh---
Confidence 7777654443 322 2334789999999999999999999999999999999999999999999998764433
Q ss_pred ccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc----cchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Q psy3224 707 INREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQ----EDRKHTWMEDAESCANQGAYECARAIYAQALATF------ 776 (1278)
Q Consensus 707 ~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------ 776 (1278)
....+..|......|.+..|..++..++...... ......+++.+..+...|-..+|..++++.++.+
T Consensus 630 --~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 630 --KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred --HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 3345566777788899999999888887643221 2245677777777777777777777777666542
Q ss_pred --CCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHH-------hCCchHHHHHhhccc--------chHHHHHHHHHHHH
Q psy3224 777 --PSKKSIWLRAAYFEKNHGTRE--SLETLLQKAVA-------HCPKSEVLWLMGAKS--------NKKSIWLRAAYFEK 837 (1278)
Q Consensus 777 --P~~~~~~~~la~~~~~~g~~~--~A~~~l~~al~-------~~p~~~~~~~~~~~~--------~~~~~~l~~a~l~~ 837 (1278)
.++.-.|..++..+.-.-..+ -....+-.++. ..|++..+ +++.+. .....|.+.+.-+.
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l-~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLL-FLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHH-HHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 344556666654433221111 11111111111 12233311 111110 11234555443222
Q ss_pred -------hc-CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q psy3224 838 -------NH-GTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNE 909 (1278)
Q Consensus 838 -------~~-g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~ 909 (1278)
.. .+...|+.++.++++.+.++...|..+|.+ ...|++.-|.-.|-+.+...|.+...|..++.++....+
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEeccc
Confidence 22 233579999999999999999999999988 566899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CHHHHHHHHHHHHHcCCH
Q psy3224 910 YERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAP------TPRVMIQSAKLEWCLDNL 983 (1278)
Q Consensus 910 ~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~la~~~~~~g~~ 983 (1278)
++-|...|.++. ...|.+...|...+.+....|+.-++..+|......+. .-..|+.-......+|++
T Consensus 866 ~E~A~~af~~~q------SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~ 939 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQ------SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNI 939 (1238)
T ss_pred HHHhhHHHHhhh------hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccch
Confidence 999999999998 88999999999999999999999999999988554432 235566555566666666
Q ss_pred HHH----------HHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHH
Q psy3224 984 ERA----------LQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKC-----P-HSVPLWIMLANLEER 1047 (1278)
Q Consensus 984 ~~A----------~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p-~~~~~~~~la~l~~~ 1047 (1278)
+.- --.+++.+...|+...++...|.....++.+..|...+.+++..- . .+..+--.+++++..
T Consensus 940 e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~ls 1019 (1238)
T KOG1127|consen 940 EESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELS 1019 (1238)
T ss_pred HHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Confidence 543 345566677899999999999999999999999999888877431 1 123355577899999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH---HHHHHHhccCCCCChhHHHH
Q psy3224 1048 RKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGI---LWAEAIFLEPRPQRKTKSVD 1124 (1278)
Q Consensus 1048 ~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~---~~~~~~~~~~~~~~~~~A~~ 1124 (1278)
.|.++.|...+...-.. .+.++ .......+..|+++++.+.|++++....++.. +....+......+..+.|..
T Consensus 1020 lgefe~A~~a~~~~~~e--vdEdi-~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~ 1096 (1238)
T KOG1127|consen 1020 LGEFESAKKASWKEWME--VDEDI-RGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQF 1096 (1238)
T ss_pred hcchhhHhhhhcccchh--HHHHH-hhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHH
Confidence 99999776554322110 11111 11112235578999999999999988755443 33444555566677777777
Q ss_pred HHHHh-ccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy3224 1125 ALKKC-EHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNR 1203 (1278)
Q Consensus 1125 ~l~k~-~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~k 1203 (1278)
.+-.+ ..++. +..++..|+-++.-..+-.-.....+.
T Consensus 1097 lLfe~~~ls~~------------------------------------------~~~sll~L~A~~ild~da~~ssailee 1134 (1238)
T KOG1127|consen 1097 LLFEVKSLSKV------------------------------------------QASSLLPLPAVYILDADAHGSSAILEE 1134 (1238)
T ss_pred HHHHHHHhCcc------------------------------------------chhhHHHHHHHHHHhhhhhhhHHHHHH
Confidence 77666 22222 222455555444433333322222222
Q ss_pred H---HhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchhhhhh
Q psy3224 1204 T---VKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCRVA 1253 (1278)
Q Consensus 1204 a---l~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w~~~~ 1253 (1278)
. ++..--+-+.-...-.++...|+.....+.++|++..+|.++.+|..+.
T Consensus 1135 l~kl~k~e~~~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1135 LEKLLKLEWFCWPPGLLKELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLS 1187 (1238)
T ss_pred HHHhhhhHHhccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 2 2211112222223344566777777777788888888888888887654
No 40
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.89 E-value=9.7e-19 Score=219.32 Aligned_cols=390 Identities=11% Similarity=-0.015 Sum_probs=245.6
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccch
Q psy3224 746 KHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNK 825 (1278)
Q Consensus 746 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~ 825 (1278)
......+|..+...|++++|+.+|+++++.+|++..++..++.++...++.++|+..+++++..+|.+..
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~---------- 171 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN---------- 171 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH----------
Confidence 3455556889999999999999999999999999999998899999999999999999999988888542
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy3224 826 KSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLES 905 (1278)
Q Consensus 826 ~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~ 905 (1278)
++..+++....++..+|+..++++++.+|++..++..+..++...|-...|.++..+--.........|+....+-.
T Consensus 172 ---~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~ 248 (822)
T PRK14574 172 ---YMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAE 248 (822)
T ss_pred ---HHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHH
Confidence 23345555556777669999999999999999988888888888888888886665522222111222322222211
Q ss_pred hcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCH-----HHHHHHHHHH
Q psy3224 906 ENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAS---APTP-----RVMIQSAKLE 977 (1278)
Q Consensus 906 ~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~---~p~~-----~~~~~la~~~ 977 (1278)
..+-+. .|.... -.+---.+.|+..++.++.. .|.. .+......++
T Consensus 249 ----------~vr~a~--------~~~~~~--------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL 302 (822)
T PRK14574 249 ----------QVRMAV--------LPTRSE--------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGAL 302 (822)
T ss_pred ----------HHhhcc--------cccccc--------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHH
Confidence 111110 000000 00011234455555555542 2321 1222233344
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCC
Q psy3224 978 WCLDNLERALQLLDEAIKVF-PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP------HSVPLWIMLANLEERRKM 1050 (1278)
Q Consensus 978 ~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~l~~~~g~ 1050 (1278)
...+++.+++..|+.+.... |--..+....|..|...+++++|+.+|..++...| .+......|...+...++
T Consensus 303 ~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~ 382 (822)
T PRK14574 303 LVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQ 382 (822)
T ss_pred HHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhccc
Confidence 55566666666666555432 11233555556666666666666666666655442 122223445555556666
Q ss_pred HHHHHHHHHHHHHhCC---------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCC
Q psy3224 1051 LIKARSVLEKGRLRNP---------------NCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPR 1115 (1278)
Q Consensus 1051 ~~~A~~~l~kal~~~p---------------~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~ 1115 (1278)
+++|..++++.....| +.......++.++...|+..+|.+.+++.+...|.++.++..++.++..
T Consensus 383 ~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~ 462 (822)
T PRK14574 383 LDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLA 462 (822)
T ss_pred HHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 6666666666665333 1223444555666667777777777777777777777777777777777
Q ss_pred CCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHH
Q psy3224 1116 PQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQ 1195 (1278)
Q Consensus 1116 ~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~ 1195 (1278)
.|....|...++.+. ..+|++..+...+|.++...+++.
T Consensus 463 Rg~p~~A~~~~k~a~-----------------------------------------~l~P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 463 RDLPRKAEQELKAVE-----------------------------------------SLAPRSLILERAQAETAMALQEWH 501 (822)
T ss_pred cCCHHHHHHHHHHHh-----------------------------------------hhCCccHHHHHHHHHHHHhhhhHH
Confidence 777777777665441 113344557778888888899999
Q ss_pred HHHHHHHHHHhhCCCChhHH
Q psy3224 1196 KCREWFNRTVKIDPDLGDAW 1215 (1278)
Q Consensus 1196 ~A~~~~~kal~~~P~~~d~~ 1215 (1278)
+|....+++++.+|+++.+-
T Consensus 502 ~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 502 QMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HHHHHHHHHHhhCCCchhHH
Confidence 99999999999999988643
No 41
>KOG2003|consensus
Probab=99.89 E-value=9.6e-20 Score=197.15 Aligned_cols=467 Identities=14% Similarity=0.076 Sum_probs=323.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHH
Q psy3224 709 REHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSK-----KSIW 783 (1278)
Q Consensus 709 ~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~-----~~~~ 783 (1278)
.......|..+.......+|...|+-++....- ++...+-+.++.+++++.+|.+|+++|+-++..-|.- ..+.
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf-~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMF-PNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhccccc-CCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 334445555555555555555555555443211 2223344556666666666667777777666666641 2344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCC---
Q psy3224 784 LRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAH--CPK--- 858 (1278)
Q Consensus 784 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~--~P~--- 858 (1278)
..++..+.+.|+++.|+..|+..++..|+-.. -+++..+....|+.++-.+.|.+++.. .|+
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~~pn~~a-------------~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddk 346 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA-------------ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDK 346 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHhCccHHh-------------hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCccc
Confidence 45555666666677777766666666666432 233444445556666666666666543 111
Q ss_pred ------cH-HHHHHHH--H-HH--HHcCCHHHHHHHHHHHHHh-----CCCC--------------------HHHHHHHH
Q psy3224 859 ------SE-VLWLMGA--K-SK--WLAGDVPAARGILSLAFQA-----NPNS--------------------EEIWLAAV 901 (1278)
Q Consensus 859 ------~~-~~~~~la--~-~~--~~~g~~~~A~~~l~~al~~-----~p~~--------------------~~~~~~la 901 (1278)
++ ..++.-+ . .+ +...+-..|.+....+.++ .|+. .++-+..+
T Consensus 347 yi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka 426 (840)
T KOG2003|consen 347 YIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKA 426 (840)
T ss_pred ccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHH
Confidence 00 0111000 0 00 1111222233322222221 1221 12223444
Q ss_pred HHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Q psy3224 902 KLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESEN--NEYERARRLLAKARASAP-TPRVMIQSAKLEW 978 (1278)
Q Consensus 902 ~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~--g~~~~A~~~l~~al~~~p-~~~~~~~la~~~~ 978 (1278)
--+.+.|+++.|++++.-.-. +.+.....+-..+..++..+ .++..|..+...++..+. ++.+..+.|.+.+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~-----kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEK-----KDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAF 501 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHh-----ccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceee
Confidence 456788999999888776531 11222233344455555443 478888888888888765 5778888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 979 CLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVL 1058 (1278)
Q Consensus 979 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l 1058 (1278)
..|++++|.+.|.+++..+..+.++++++|..+..+|+.++|+++|-+.-.+--++.+++..++.+|..+.+..+|+++|
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888888999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHh-ccCcchhh
Q psy3224 1059 EKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKC-EHDPHVLL 1137 (1278)
Q Consensus 1059 ~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~-~~~p~~~~ 1137 (1278)
.++..+-|++|.++..++.+|-+.|+..+|.+++-.....+|.+.+....++..|...+=.++++..|+++ .-.|..
T Consensus 582 ~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~-- 659 (840)
T KOG2003|consen 582 MQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ-- 659 (840)
T ss_pred HHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH--
Confidence 99999999999999999999999999999999999999999999998888888888888889999999988 445551
Q ss_pred hhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHH
Q psy3224 1138 AVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAY 1217 (1278)
Q Consensus 1138 ~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~ 1217 (1278)
..-...++.+|.+.|+|.+|...|+.....+|++.+.+..
T Consensus 660 ----------------------------------------~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkf 699 (840)
T KOG2003|consen 660 ----------------------------------------SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKF 699 (840)
T ss_pred ----------------------------------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHH
Confidence 2245678999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHH
Q psy3224 1218 FYKFEIINGTEETQAEVKKR 1237 (1278)
Q Consensus 1218 l~~~~~~~G~~~~A~~~l~k 1237 (1278)
+.++...+|-.+ +.++.++
T Consensus 700 lvri~~dlgl~d-~key~~k 718 (840)
T KOG2003|consen 700 LVRIAGDLGLKD-AKEYADK 718 (840)
T ss_pred HHHHhccccchh-HHHHHHH
Confidence 999888887533 4444433
No 42
>KOG1155|consensus
Probab=99.88 E-value=2.8e-19 Score=196.12 Aligned_cols=360 Identities=15% Similarity=0.094 Sum_probs=274.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcC
Q psy3224 831 RAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPN--SEEIWLAAVKLESENN 908 (1278)
Q Consensus 831 ~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~la~l~~~~g 908 (1278)
-.+.++...|....|+..+..++...|-+..+|+.++.+... ++........-|. +.-.-..+..++....
T Consensus 169 L~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~ 241 (559)
T KOG1155|consen 169 LYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKKAYQELH 241 (559)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHHHHHHHH
Confidence 345566677777777777777777777777777766655422 1222222222231 1222234445555555
Q ss_pred cHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHH
Q psy3224 909 EYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERAL 987 (1278)
Q Consensus 909 ~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~ 987 (1278)
..++++.-++.... ...|.+.-+-...|.+.....++++|+..|+.+++.+|- -.-.-.+.++++-.++-.+-.
T Consensus 242 q~~e~~~k~e~l~~-----~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 242 QHEEALQKKERLSS-----VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHh-----ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 66666666666541 236777777777788888888888888888888888774 122223333444444434433
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 988 QLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPN 1067 (1278)
Q Consensus 988 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~ 1067 (1278)
-+-+.+..++.--++....+|..|.-.++.++|+.+|+++++++|....+|..+|.=|..+++...|++.|++|++++|.
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~ 396 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR 396 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch
Confidence 44455666666667777778888888899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhc
Q psy3224 1068 CAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCEN 1147 (1278)
Q Consensus 1068 ~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~ 1147 (1278)
+-.+|+.+|+.|.-++...=|+-+|++++...|++..+|..++.+|.+.++.++|++.|+++..-..+
T Consensus 397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt------------ 464 (559)
T KOG1155|consen 397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT------------ 464 (559)
T ss_pred hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc------------
Confidence 99999999999999999999999999999999999999999999999999999999999988322220
Q ss_pred ccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------hCCCChhHHHHHHH
Q psy3224 1148 KNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVK-------IDPDLGDAWAYFYK 1220 (1278)
Q Consensus 1148 ~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~-------~~P~~~d~~~~l~~ 1220 (1278)
+..++..||.+|.+.++.++|..+|++.++ ..|+-..+..+|+.
T Consensus 465 -----------------------------e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~ 515 (559)
T KOG1155|consen 465 -----------------------------EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAE 515 (559)
T ss_pred -----------------------------chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Confidence 112899999999999999999999999998 45555668888999
Q ss_pred HHHHhCCHHHHHHHHHHHHHhCC
Q psy3224 1221 FEIINGTEETQAEVKKRCLAAEP 1243 (1278)
Q Consensus 1221 ~~~~~G~~~~A~~~l~ka~~~~P 1243 (1278)
.+.+++++++|..+..++..-++
T Consensus 516 ~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 516 YFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred HHHhhcchHHHHHHHHHHhcCCc
Confidence 99999999999998888876643
No 43
>KOG2003|consensus
Probab=99.87 E-value=5.6e-19 Score=191.27 Aligned_cols=458 Identities=13% Similarity=0.055 Sum_probs=357.2
Q ss_pred hHhhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcc
Q psy3224 745 RKHTWMEDAESCANQGAYECARAIYAQALA--TFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAK 822 (1278)
Q Consensus 745 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~ 822 (1278)
...+++.+|..|....-+.+|+..|+-+++ .+|+...+-..++.++.+..++.+|+.+|+.++...|.-..
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink------- 272 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINK------- 272 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccch-------
Confidence 356888999999999999999999998885 47888888889999999999999999999999999887532
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC--------
Q psy3224 823 SNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQAN--PN-------- 892 (1278)
Q Consensus 823 ~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~-------- 892 (1278)
.....+..+.+....+.|.|+.|+..|+.+++..|+... -+.+..+++..|+-++-.+.|.+.+.+. |+
T Consensus 273 ~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a-~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ 351 (840)
T KOG2003|consen 273 DMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIA-ALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEK 351 (840)
T ss_pred hhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHh-hhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCc
Confidence 111233444455556789999999999999999998755 5667778889999999999999998642 11
Q ss_pred -C--HHHHHHHHH--HH--HhcCcHHHHHHHHHHHHHhhh-------------------hhhcCCCcHHHHHHHHHHHHH
Q psy3224 893 -S--EEIWLAAVK--LE--SENNEYERARRLLAKARAQAG-------------------AFQANPNSEEIWLAAVKLESE 946 (1278)
Q Consensus 893 -~--~~~~~~la~--l~--~~~g~~~~A~~~l~~al~~~~-------------------~l~~~p~~~~~~~~la~~~~~ 946 (1278)
+ ..+...... .+ ....+-..|.+.+-.+...+. .-...|-..++-...+.-+.+
T Consensus 352 ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk 431 (840)
T KOG2003|consen 352 DDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK 431 (840)
T ss_pred CCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh
Confidence 1 111111111 11 111122223333333322211 011222223334455667889
Q ss_pred cCCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 947 NNEYERARRLLAKARASAPT--PRVMIQSAKLEWC--LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHD 1022 (1278)
Q Consensus 947 ~g~~~~A~~~l~~al~~~p~--~~~~~~la~~~~~--~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 1022 (1278)
+|+++.|++++.-.-+.+.. ..+-.++..+++. -.++..|..+-..++..+.-++.++.+.|.+.+..|++++|..
T Consensus 432 ~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 432 NGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred ccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHH
Confidence 99999999998876665543 3444455555444 3478999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Q psy3224 1023 TFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNA 1102 (1278)
Q Consensus 1023 ~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~ 1102 (1278)
.|+.++..+..+.++++.++..+..+|+.++|+.+|-+...+--++..++..++.+|..+.+..+|++++.++...-|++
T Consensus 512 ~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~d 591 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPND 591 (840)
T ss_pred HHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCC
Confidence 99999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCCChhHHHHHHHHh-ccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHH
Q psy3224 1103 GILWAEAIFLEPRPQRKTKSVDALKKC-EHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVL 1181 (1278)
Q Consensus 1103 ~~~~~~~~~~~~~~~~~~~A~~~l~k~-~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l 1181 (1278)
+.++..++.+|.+.|+..+|.+.+-.. .- .|.|.++.
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyry------------------------------------------fp~nie~i 629 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY------------------------------------------FPCNIETI 629 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccc------------------------------------------cCcchHHH
Confidence 999999999999999999987764321 11 34455577
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchhhhh
Q psy3224 1182 LAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCRV 1252 (1278)
Q Consensus 1182 ~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w~~~ 1252 (1278)
-.||..|....-.++|+.+|++|.-+.|+...-...++.|+.+.|++.+|.++++..-...|.+-+...-+
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkfl 700 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFL 700 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHH
Confidence 77788888888889999999999999997665555568889999999999999999999999886554433
No 44
>KOG1173|consensus
Probab=99.87 E-value=1.8e-18 Score=194.67 Aligned_cols=471 Identities=16% Similarity=0.051 Sum_probs=346.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHH--HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy3224 611 RLWKAAVELEDPEDARILLSRAVECC--PTSVELWLA--LARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNN 686 (1278)
Q Consensus 611 ~Lw~al~~l~~~e~A~~~l~kal~~~--P~~~~~w~~--la~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 686 (1278)
.+|.-.+...+|.-|.-+-+|...+. |.+. .|++ +.-.++|+.|...+..- .....+......++.++.+...+
T Consensus 21 ~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~-~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~ 98 (611)
T KOG1173|consen 21 RLVRDALMQHRYKTALFWADKVAGLTNDPADI-YWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEW 98 (611)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhccCChHHH-HHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHH
Confidence 45666666668888888888876653 4332 3443 22346777777766553 44445677777888888888888
Q ss_pred HHHHHHHHHHHHhhhhCCccccHHHHHHH-HHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHH
Q psy3224 687 AMVDKIIDRALSSLSANGVEINREHWFKE-AIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECA 765 (1278)
Q Consensus 687 ~~A~~il~~al~~~~~~~~~~~~~~~l~~-A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A 765 (1278)
++|..++.+.-.. ..+ ....-.. +......+.. ... .......+.+..+++|....++++|
T Consensus 99 ~~al~vl~~~~~~--~~~----f~yy~~~~~~~l~~n~~~----~~~--------~~~~essic~lRgk~y~al~n~~~a 160 (611)
T KOG1173|consen 99 DQALLVLGRGHVE--TNP----FSYYEKDAANTLELNSAG----EDL--------MINLESSICYLRGKVYVALDNREEA 160 (611)
T ss_pred HHHHHHhcccchh--hcc----hhhcchhhhceeccCccc----ccc--------cccchhceeeeeeehhhhhccHHHH
Confidence 8888877754100 010 0000011 1111111110 000 0011245677788999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------------HHHHHHHHHHHhC-Cch---HHHH-----Hhhcc
Q psy3224 766 RAIYAQALATFPSKKSIWLRAAYFEKNHGTRE--------------SLETLLQKAVAHC-PKS---EVLW-----LMGAK 822 (1278)
Q Consensus 766 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~--------------~A~~~l~~al~~~-p~~---~~~~-----~~~~~ 822 (1278)
+..|.+|+..++.+.++...+.......-+-+ +=.+.++...+.. +.+ .... .+...
T Consensus 161 r~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l 240 (611)
T KOG1173|consen 161 RDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGL 240 (611)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhh
Confidence 99999999999999888777754443322100 0011111111110 000 0000 00111
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 823 SNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVK 902 (1278)
Q Consensus 823 ~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 902 (1278)
....++....+......+++.+..++.+..++.+|-+...+....-++...|+..+-..+-.+.+..+|+.+-.|+..|.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 23456666777777888999999999999999999777666555558888898888888888899999999999999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcC
Q psy3224 903 LESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTP-RVMIQSAKLEWCLD 981 (1278)
Q Consensus 903 l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~la~~~~~~g 981 (1278)
.|...|.+.+|+.+|.++. ..+|....+|..+|..+...+..++|+..|..|-+..|.. .-.+.+|.-|...+
T Consensus 321 YYl~i~k~seARry~SKat------~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKAT------TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred HHHHhcCcHHHHHHHHHHh------hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhc
Confidence 9999999999999999998 8899999999999999999999999999999999998863 44445566677799
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---CHHHHHHHHHHHHHcCCHHHH
Q psy3224 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP----H---SVPLWIMLANLEERRKMLIKA 1054 (1278)
Q Consensus 982 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~---~~~~~~~la~l~~~~g~~~~A 1054 (1278)
++.-|..+|.+|+.++|.+|-++..+|.+....+.+.+|..+|+.++..-+ . -...+.++|.++.+.+.+++|
T Consensus 395 n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred cHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999984322 1 245688999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Q psy3224 1055 RSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWA 1107 (1278)
Q Consensus 1055 ~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~ 1107 (1278)
+..|++++.+.|.++.++...|.++..+|+++.|++.|.++|.+.|++..+-.
T Consensus 475 I~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~ 527 (611)
T KOG1173|consen 475 IDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISE 527 (611)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999864443
No 45
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.87 E-value=3.9e-19 Score=212.53 Aligned_cols=294 Identities=12% Similarity=0.056 Sum_probs=258.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q psy3224 829 WLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNS----EEIWLAAVKLE 904 (1278)
Q Consensus 829 ~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~l~ 904 (1278)
.+..+......|++++|+..|+++++.+|++..++..+|.++...|++++|..++++++...+.. ..++..++.++
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 33445566778999999999999999999999999999999999999999999999998854332 35688999999
Q ss_pred HhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH------HHHHHHHHHHH
Q psy3224 905 SENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTP------RVMIQSAKLEW 978 (1278)
Q Consensus 905 ~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~la~~~~ 978 (1278)
...|++++|+..|.+++ ...|.+..++..++.++...|++++|+..+.+++...|.+ ..+..++.++.
T Consensus 118 ~~~g~~~~A~~~~~~~l------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 118 LKAGLLDRAEELFLQLV------DEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHCCCHHHHHHHHHHHH------cCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 99999999999999997 7788899999999999999999999999999999887652 35667888999
Q ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 979 CLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS-VPLWIMLANLEERRKMLIKARSV 1057 (1278)
Q Consensus 979 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~l~~~~g~~~~A~~~ 1057 (1278)
..|++++|+.+|+++++..|++..++..+|.++...|++++|...|++++...|.+ ..++..++.++...|++++|+..
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~ 271 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF 271 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876 45678899999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhcc--CCCCChhHHHHHHHHh
Q psy3224 1058 LEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLE--PRPQRKTKSVDALKKC 1129 (1278)
Q Consensus 1058 l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~--~~~~~~~~A~~~l~k~ 1129 (1278)
+++++...|+.... ..++.++...|++++|..++.++++..|++..+...+.... ...|+..+++..++++
T Consensus 272 l~~~~~~~p~~~~~-~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~ 344 (389)
T PRK11788 272 LRRALEEYPGADLL-LALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL 344 (389)
T ss_pred HHHHHHhCCCchHH-HHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence 99999999987655 88999999999999999999999999999886654343332 2356788888877765
No 46
>KOG4162|consensus
Probab=99.87 E-value=3e-17 Score=191.13 Aligned_cols=383 Identities=19% Similarity=0.136 Sum_probs=288.4
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Q psy3224 824 NKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQAN--PNSEEIWLAAV 901 (1278)
Q Consensus 824 ~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~~~~~~~~la 901 (1278)
+...+|-.........|+++.+.+.|++++...-...+.|..++..+...|.-..|..+++..+... |.++..++..+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4566777778888888999999999999998877778889999999999999999999999999888 76677766666
Q ss_pred HHH-HhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHhCCC-HH
Q psy3224 902 KLE-SENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESE-----------NNEYERARRLLAKARASAPT-PR 968 (1278)
Q Consensus 902 ~l~-~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~-----------~g~~~~A~~~l~~al~~~p~-~~ 968 (1278)
.++ ...+..++++.+..+++..+. .+..--.+..+..+|.+|-. .-...+++..++++++..|+ +.
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~-~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLG-GQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhh-hhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 655 466888999999999886442 12222234445555554432 12356788888888888875 67
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 969 VMIQSAKLEWCLDNLERALQLLDEAIKVFP-DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047 (1278)
Q Consensus 969 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~ 1047 (1278)
+.+.++.-|...++.+.|.....+++..++ +++..|..++.++-..+++..|+.+...++...|+|.......+.+...
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 888888888888889999999999999854 6688899999998888999999999998888888865555444555555
Q ss_pred cCCHHHHHHHHHHHHHhCC-------------------------------------------------------------
Q psy3224 1048 RKMLIKARSVLEKGRLRNP------------------------------------------------------------- 1066 (1278)
Q Consensus 1048 ~g~~~~A~~~l~kal~~~p------------------------------------------------------------- 1066 (1278)
.++.++|+......+.+..
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 5555555444333332211
Q ss_pred ---CC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhh
Q psy3224 1067 ---NC-----AELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLA 1138 (1278)
Q Consensus 1067 ---~~-----~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~ 1138 (1278)
++ ..+|...+......++.++|..++.++-..+|-...+|+..+..+...|+..+|...|..
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~---------- 709 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLV---------- 709 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHH----------
Confidence 00 024555555666666666666666666666666666666666666666666666665543
Q ss_pred hhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCChhHHH
Q psy3224 1139 VSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCRE--WFNRTVKIDPDLGDAWA 1216 (1278)
Q Consensus 1139 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~--~~~kal~~~P~~~d~~~ 1216 (1278)
++..+|+++.++..+|.++...|+..-|.. .+..++.++|.+.++|+
T Consensus 710 -------------------------------Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~ 758 (799)
T KOG4162|consen 710 -------------------------------ALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWY 758 (799)
T ss_pred -------------------------------HHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHH
Confidence 345678888899999999999998887777 99999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCCCcch
Q psy3224 1217 YFYKFEIINGTEETQAEVKKRCLAAEPKHGEN 1248 (1278)
Q Consensus 1217 ~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~ 1248 (1278)
.++.+..+.|+.+.|.++|.-++++++.+|-.
T Consensus 759 ~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 759 YLGEVFKKLGDSKQAAECFQAALQLEESNPVL 790 (799)
T ss_pred HHHHHHHHccchHHHHHHHHHHHhhccCCCcc
Confidence 99999999999999999999999999988754
No 47
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=6.1e-19 Score=210.92 Aligned_cols=302 Identities=13% Similarity=0.113 Sum_probs=207.3
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchH
Q psy3224 747 HTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKK 826 (1278)
Q Consensus 747 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~ 826 (1278)
...+..|..+...|++++|+..|++++..+|++..++..++.++...|++++|...+++++...+....
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~----------- 104 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE----------- 104 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH-----------
Confidence 355666788888999999999999999999999999999999999999999988888877764222110
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q psy3224 827 SIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESE 906 (1278)
Q Consensus 827 ~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~ 906 (1278)
.....+..+|.++...|++++|+.+|.++++..|.+..++..++.++..
T Consensus 105 -------------------------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~ 153 (389)
T PRK11788 105 -------------------------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ 153 (389)
T ss_pred -------------------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 0012344555555555555555555555555555555555555555555
Q ss_pred cCcHHHHHHHHHHHHHhhhhhhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHc
Q psy3224 907 NNEYERARRLLAKARAQAGAFQANPNS-----EEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCL 980 (1278)
Q Consensus 907 ~g~~~~A~~~l~~al~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~ 980 (1278)
.|++++|+..+++++ ...|.+ ...+..++.++...|++++|+..|+++++..|+ ...++.++.++...
T Consensus 154 ~g~~~~A~~~~~~~~------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 227 (389)
T PRK11788 154 EKDWQKAIDVAERLE------KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQ 227 (389)
T ss_pred hchHHHHHHHHHHHH------HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHC
Confidence 555555555555554 223322 123445666666777777777777777777665 46677777777777
Q ss_pred CCHHHHHHHHHHHHHhCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 981 DNLERALQLLDEAIKVFPDF-AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLE 1059 (1278)
Q Consensus 981 g~~~~A~~~l~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~ 1059 (1278)
|++++|+.+|++++...|.+ ..++..++.++...|++++|...+++++...|+.. .+..++.++...|++++|+.+|+
T Consensus 228 g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 228 GDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred CCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHH
Confidence 77888888888777777765 45667778888888888888888888888888664 44777888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q psy3224 1060 KGRLRNPNCAELWLAAIRVEIR--AGLKDIANTMMAKALQ 1097 (1278)
Q Consensus 1060 kal~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~kal~ 1097 (1278)
+++...|++..+...+...+.. .|+..++..++++.++
T Consensus 307 ~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 307 EQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 8888888777554333332221 4577777777776664
No 48
>KOG1126|consensus
Probab=99.86 E-value=2.3e-20 Score=214.60 Aligned_cols=288 Identities=15% Similarity=0.105 Sum_probs=259.2
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy3224 841 TRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKA 920 (1278)
Q Consensus 841 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~a 920 (1278)
+..+|+.+|++.-...++...+...+|..|+..++|++|..+|+.+-+..|-...-.-.+..++..+.+.-+--.+-+..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 34569999999777888888888999999999999999999999999999976655555555555444433333333333
Q ss_pred HHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 921 RAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPD 999 (1278)
Q Consensus 921 l~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 999 (1278)
+ ..+|..++.|..+|.+|..+++++.|+++|+++++++|. ..++..+|.=+.....++.|..+|+.|+..+|.
T Consensus 414 i------~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 414 I------DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred H------hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 3 889999999999999999999999999999999999996 688888888888899999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy3224 1000 FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVE 1079 (1278)
Q Consensus 1000 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~ 1079 (1278)
+..+|+.+|.+|.++++++.|.-.|++|++++|.+..+...++.++.+.|+.++|+.+|++|+.++|.++...+..+.++
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASIL 567 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHh-ccCcc
Q psy3224 1080 IRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKC-EHDPH 1134 (1278)
Q Consensus 1080 ~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~-~~~p~ 1134 (1278)
...+++++|...+++..+..|+...+++.++..+.+.|+.+.|+..|--+ ..+|.
T Consensus 568 ~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999888777 56676
No 49
>KOG4162|consensus
Probab=99.86 E-value=4.2e-17 Score=189.90 Aligned_cols=433 Identities=15% Similarity=0.083 Sum_probs=303.9
Q ss_pred CCHHHH----HHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHH
Q psy3224 638 TSVELW----LALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWF 713 (1278)
Q Consensus 638 ~~~~~w----~~la~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l 713 (1278)
++..+| +++.+.|+++.+.+.|++++...-...+.|..++..+...|....|+.+++..+...+. ..+....+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~---ps~~s~~L 397 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ---PSDISVLL 397 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC---CCcchHHH
Confidence 445555 34556788888888888887776667788888888888888888888888877654321 11233344
Q ss_pred HHHHHH-HHcCChhHHHHHHHHHHhcC--CCccchHhhHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCC
Q psy3224 714 KEAIEA-EKAGSVHTCQALIRAIIGYG--VEQEDRKHTWMEDAESCANQ-----------GAYECARAIYAQALATFPSK 779 (1278)
Q Consensus 714 ~~A~~~-~~~g~~~~A~~i~~~~l~~~--~~~~~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~P~~ 779 (1278)
..+..| ...+..+++......++... ....-....+..+|-+|-.+ -...+++..++++++.+|+|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 444444 34455666666666666522 11122344555555544322 12357788888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc
Q psy3224 780 KSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKS 859 (1278)
Q Consensus 780 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~ 859 (1278)
+.+.+.++..|...++.+.|.....+++..++.+. ...|.-++.+....+++..|+.+.+.++...|+|
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~-----------~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDS-----------AKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc-----------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 88888888888888888888888888888866654 3467777777777888888888888888888887
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH---------HHHHhcCcHHHHHHHHHHHHHhhhhhhcC
Q psy3224 860 EVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAV---------KLESENNEYERARRLLAKARAQAGAFQAN 930 (1278)
Q Consensus 860 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la---------~l~~~~g~~~~A~~~l~~al~~~~~l~~~ 930 (1278)
..+......+....++.++|+..+...+.....-..+-..+. .+.....+..+|.+...++...
T Consensus 547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l------- 619 (799)
T KOG4162|consen 547 HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL------- 619 (799)
T ss_pred hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH-------
Confidence 776666666666778888888877777665432222211111 1111122222333322222211
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHH
Q psy3224 931 PNSEEIWLAAVKLESENNEYERARRLLAKARAS-APT------PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKL 1003 (1278)
Q Consensus 931 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-~p~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 1003 (1278)
+..-...-.++.. +.+.... .|. ..+|...+..+...++.++|..++.++-+++|.++..
T Consensus 620 ----------~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~ 686 (799)
T KOG4162|consen 620 ----------VASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASV 686 (799)
T ss_pred ----------HHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHH
Confidence 0000000000111 1110000 111 4788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 1004 WMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARS--VLEKGRLRNPNCAELWLAAIRVEIR 1081 (1278)
Q Consensus 1004 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~--~l~kal~~~p~~~~~~~~l~~~~~~ 1081 (1278)
|+..|.++...|++.+|...|..++..+|+++.....+|.++...|+..-|.. .+..+++++|.++++|+.+|.++..
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~ 766 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK 766 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998777766 9999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHCCCcHH
Q psy3224 1082 AGLKDIANTMMAKALQECPNAGI 1104 (1278)
Q Consensus 1082 ~g~~~~A~~~~~kal~~~P~~~~ 1104 (1278)
.|+.++|.+.|..|+++.+.+|.
T Consensus 767 ~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 767 LGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred ccchHHHHHHHHHHHhhccCCCc
Confidence 99999999999999999887763
No 50
>KOG1126|consensus
Probab=99.85 E-value=1.9e-19 Score=207.19 Aligned_cols=293 Identities=15% Similarity=0.113 Sum_probs=236.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhc
Q psy3224 760 GAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNH 839 (1278)
Q Consensus 760 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~ 839 (1278)
-+..+|+..|++.-...++..-+...+|..|+..+++++|.++|+.+....|-...-.-. ....+|. .+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~mei----yST~LWH-------Lq 401 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEI----YSTTLWH-------LQ 401 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhH----HHHHHHH-------HH
Confidence 355788888988777777777777788999999999999999999888888764321000 0011121 11
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy3224 840 GTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAK 919 (1278)
Q Consensus 840 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~ 919 (1278)
.++ +---+.+..+..+|..|+.|..+|.+|.-+++++.|++.|+++++++|...-+|..+|.=+.....++.|..+|+.
T Consensus 402 ~~v-~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 402 DEV-ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred hhH-HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 111 1223446677889999999999999999999999999999999999999999999999888888999999999999
Q ss_pred HHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 920 ARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTP-RVMIQSAKLEWCLDNLERALQLLDEAIKVFP 998 (1278)
Q Consensus 920 al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 998 (1278)
|+ ..+|.+..+|+.+|.+|.++++++.|.-.|++|+.++|.. .+...++.++.+.|+.++|+.+|++|+.++|
T Consensus 481 Al------~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~ 554 (638)
T KOG1126|consen 481 AL------GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP 554 (638)
T ss_pred hh------cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence 88 8899999999999999999999988888888888888864 6666777788888888888888888888888
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy3224 999 DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAE 1070 (1278)
Q Consensus 999 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~ 1070 (1278)
.++...+..|.++...+++++|...+++.-+..|+...++..+|.+|.+.|+.+.|+..|.-|..++|.-..
T Consensus 555 kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 555 KNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 888888888888888888888888888888888888888888888888888888888888888888885444
No 51
>KOG1174|consensus
Probab=99.83 E-value=4.6e-17 Score=175.86 Aligned_cols=447 Identities=16% Similarity=0.081 Sum_probs=342.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCC-----------------ccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 715 EAIEAEKAGSVHTCQALIRAIIGYGVE-----------------QEDRKHTWMEDAESCANQGAYECARAIYAQALATFP 777 (1278)
Q Consensus 715 ~A~~~~~~g~~~~A~~i~~~~l~~~~~-----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 777 (1278)
.+........+.++...|..++..... .+.....-...+.++...++-+.|+..+.......
T Consensus 49 l~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~- 127 (564)
T KOG1174|consen 49 LLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL- 127 (564)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-
Confidence 344455556677777777777654210 01123444556777777777777776665443221
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy3224 778 SKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCP 857 (1278)
Q Consensus 778 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P 857 (1278)
..+.+-+.++.++..-++..++.-.+...+..+|-.-.... . .+...-.-.+ .-..-..++...|
T Consensus 128 r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~------------~--ll~l~v~g~e-~~S~~m~~~~~~~ 192 (564)
T KOG1174|consen 128 RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIE------------A--LLELGVNGNE-INSLVMHAATVPD 192 (564)
T ss_pred cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHH------------H--HHHHhhcchh-hhhhhhhheecCC
Confidence 13344555566666555555555556666666665432111 0 0111001111 1112223344556
Q ss_pred CcHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcH
Q psy3224 858 KSEVLWL---MGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSE 934 (1278)
Q Consensus 858 ~~~~~~~---~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~ 934 (1278)
..+..|. .+|+++....-+..+..++-.-....|++..+...++.++...|+..+|+..|+++. ..+|...
T Consensus 193 ~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~------~~dpy~i 266 (564)
T KOG1174|consen 193 HFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL------CANPDNV 266 (564)
T ss_pred CccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh------hCChhhh
Confidence 6655554 344554444455555666666677889999999999999999999999999999998 8899999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy3224 935 EIWLAAVKLESENNEYERARRLLAKARASA-PTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQ 1013 (1278)
Q Consensus 935 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 1013 (1278)
...-.++.++...|++++-..+....+... .+..-|+..+..++..+++..|+.+-+++++.+|.+...++..|.++..
T Consensus 267 ~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 267 EAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA 346 (564)
T ss_pred hhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh
Confidence 999999999999999999999999998887 4578899999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHH-HHcCCHHHHHHH
Q psy3224 1014 KNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAI-RVE-IRAGLKDIANTM 1091 (1278)
Q Consensus 1014 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~-~~~-~~~g~~~~A~~~ 1091 (1278)
.++.++|.-.|+.+..+.|.....|..+...|...|.+.+|...-..++...|.+...+..++ .++ ..--.-++|..+
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf 426 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKF 426 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998877665 333 334456889999
Q ss_pred HHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHh-ccCcchhhhhhhhhhhhcccccccccCccccccccchhhhh
Q psy3224 1092 MAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKC-EHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDA 1170 (1278)
Q Consensus 1092 ~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~-~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~ 1170 (1278)
+++++...|....+-...+.++...|++..++.+|++. .+.|.
T Consensus 427 ~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D------------------------------------ 470 (564)
T KOG1174|consen 427 AEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD------------------------------------ 470 (564)
T ss_pred HHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc------------------------------------
Confidence 99999999999999999999999999999999999988 44444
Q ss_pred hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhC
Q psy3224 1171 LKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIING 1226 (1278)
Q Consensus 1171 l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G 1226 (1278)
...+..||.++...+.+++|+.+|..|+.++|++..+...+-.++....
T Consensus 471 -------~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 471 -------VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred -------cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence 1278899999999999999999999999999999998888877776554
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.82 E-value=5.6e-20 Score=208.57 Aligned_cols=259 Identities=22% Similarity=0.259 Sum_probs=85.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHH
Q psy3224 864 LMGAKSKWLAGDVPAARGILSLAFQAN--PNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAV 941 (1278)
Q Consensus 864 ~~la~~~~~~g~~~~A~~~l~~al~~~--p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la 941 (1278)
+.+|.+++..|++++|++++.+.+... |+++..|..++.+....++++.|+..|++++ ...+.++..+..++
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~------~~~~~~~~~~~~l~ 85 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLL------ASDKANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc------cccccccccccccc
Confidence 345666666666666666665443332 5556666666666666666666666666655 44555555555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHcCCHHH
Q psy3224 942 KLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVF--PDFAKLWMMKGQIEEQKNLLDK 1019 (1278)
Q Consensus 942 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~~ 1019 (1278)
.+ ...+++++|..+++++.+..+++..+..++.++...++++++..+++++.... +.++.+|..+|.++.+.|++++
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 164 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDK 164 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHH
T ss_pred cc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 55 46666666666666666655555556666666666666666666666655433 4556666666666666666666
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q psy3224 1020 AHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQEC 1099 (1278)
Q Consensus 1020 A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~ 1099 (1278)
|+.+|+++++.+|+++.++..++.++...|+.++++..+.......|+++.+|..++.++..+|++++|..+|++++...
T Consensus 165 A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 165 ALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCcHHHHHHHHhccCCCCChhHHHHHHHHh
Q psy3224 1100 PNAGILWAEAIFLEPRPQRKTKSVDALKKC 1129 (1278)
Q Consensus 1100 P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~ 1129 (1278)
|+++.++..++.++...|+.++|..+++++
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp TT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 666666666666666666666666665554
No 53
>KOG0548|consensus
Probab=99.81 E-value=1.4e-16 Score=179.46 Aligned_cols=455 Identities=14% Similarity=0.028 Sum_probs=276.9
Q ss_pred ccccchHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHH----HHhcCCchHHHH
Q psy3224 491 GGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLE----AARLQPVDTARA 566 (1278)
Q Consensus 491 ~~~~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~----~a~L~~~~~A~~ 566 (1278)
....|||..|..+|.+++.++|.|--.+-.....+...|+|++|+.--.+.++.+|+-.+.|.. ...|+++++|..
T Consensus 12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 4566999999999999999999998888888889999999999999999999999999999943 345789999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHchhhHHHHHHHHHHHHHhCCCCHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHH
Q psy3224 567 VIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLWKAAVELE--DPEDARILLSRAVECCPTSVELWL 644 (1278)
Q Consensus 567 ~l~kaL~~~P~s~~lw~~~~~le~~~~~A~~ll~rAle~~P~s~~Lw~al~~l~--~~e~A~~~l~kal~~~P~~~~~w~ 644 (1278)
.|.++|++.|++..+...+++.+. ...+ +.+. -..+.+|..+.... ++-.....|.+.++.+|.++....
T Consensus 92 ay~~GL~~d~~n~~L~~gl~~a~~-~~~~------~~~~-~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 92 AYSEGLEKDPSNKQLKTGLAQAYL-EDYA------ADQL-FTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHhhcCCchHHHHHhHHHhhh-HHHH------hhhh-ccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 999999999999999888777651 1111 1111 13456777766554 333333444444444433333222
Q ss_pred HHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCC
Q psy3224 645 ALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGS 724 (1278)
Q Consensus 645 ~la~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~ 724 (1278)
.+.+......|...+..+-. ......+......+.... .+... + .+.........
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~------~~~~~~~~~~~~~~~~p~-----~~~~~-----~-~~~~~d~~ee~-------- 218 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDE------LLFYASGIEILASMAEPC-----KQEHN-----G-FPIIEDNTEER-------- 218 (539)
T ss_pred cccccHHHHHHHHHHhcCcc------ccccccccccCCCCCCcc-----cccCC-----C-CCccchhHHHH--------
Confidence 22221112222211111000 000000000000000000 00000 0 00000000000
Q ss_pred hhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 725 VHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQ 804 (1278)
Q Consensus 725 ~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~ 804 (1278)
+ . .....-...+|.......+++.|++.|..++.++ .+...+...+.++...|.+...+....
T Consensus 219 ----~----~--------k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~ 281 (539)
T KOG0548|consen 219 ----R----V--------KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCE 281 (539)
T ss_pred ----H----H--------HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchH
Confidence 0 0 0012345567888888999999999999999999 888889999999999999998887777
Q ss_pred HHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 805 KAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILS 884 (1278)
Q Consensus 805 ~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~ 884 (1278)
.+++...... ..+.. -......+|..+...++++.|+..|.
T Consensus 282 ~a~E~gre~r--------------------------------ad~kl-------Iak~~~r~g~a~~k~~~~~~ai~~~~ 322 (539)
T KOG0548|consen 282 KAVEVGRELR--------------------------------ADYKL-------IAKALARLGNAYTKREDYEGAIKYYQ 322 (539)
T ss_pred HHHHHhHHHH--------------------------------HHHHH-------HHHHHHHhhhhhhhHHhHHHHHHHHH
Confidence 7665432221 11110 11223336667777788888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 885 LAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASA 964 (1278)
Q Consensus 885 ~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 964 (1278)
+++...-. ..+..+....+++....+... -.+|.-.
T Consensus 323 kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a------~~~pe~A------------------------------ 358 (539)
T KOG0548|consen 323 KALTEHRT--------PDLLSKLKEAEKALKEAERKA------YINPEKA------------------------------ 358 (539)
T ss_pred HHhhhhcC--------HHHHHHHHHHHHHHHHHHHHH------hhChhHH------------------------------
Confidence 87665443 222333333333433333322 1122211
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy3224 965 PTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANL 1044 (1278)
Q Consensus 965 p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l 1044 (1278)
.--...|..++..|+|..|+..|.+++..+|+++.+|.+.+-+|..++.+..|+...+.+++++|+....|+.-|.+
T Consensus 359 ---~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~a 435 (539)
T KOG0548|consen 359 ---EEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAA 435 (539)
T ss_pred ---HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 22222355666667777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 1045 EERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIR 1081 (1278)
Q Consensus 1045 ~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~ 1081 (1278)
+..+.+|++|.+.|+++++.+|++..+.-.+.++...
T Consensus 436 l~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 436 LRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 7777777777777777777777777665555555554
No 54
>KOG1156|consensus
Probab=99.81 E-value=1.3e-14 Score=166.25 Aligned_cols=570 Identities=13% Similarity=0.078 Sum_probs=304.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHH----HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 621 DPEDARILLSRAVECCPTSVELWLALA----RLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRA 696 (1278)
Q Consensus 621 ~~e~A~~~l~kal~~~P~~~~~w~~la----~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~a 696 (1278)
+|++|+++|..|+...|+|.++|.-++ ++++++.....-.+.++..|..+..|+.+|..+.-.|++..|..+++..
T Consensus 90 ~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 90 KYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888888888885443 5678888888888888888888888888888888888888888888887
Q ss_pred HHhhhhCCcc---ccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 697 LSSLSANGVE---INREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQAL 773 (1278)
Q Consensus 697 l~~~~~~~~~---~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 773 (1278)
.+........ ......+-......+.|.+.+|...+...-.. ..++...-...|.++...+++++|..+|...+
T Consensus 170 ~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 170 EKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 7765311111 11234445566667777777766655443222 12233455566788888899999999999999
Q ss_pred HhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHH-HHHHHHH
Q psy3224 774 ATFPSKKSIWLRAAYFEK-NHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRES-LETLLQK 851 (1278)
Q Consensus 774 ~~~P~~~~~~~~la~~~~-~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~-A~~~~~~ 851 (1278)
..+|++..-+..+-.++. -.+..+....+|...-+..|....... ......+..++.. .-.++..
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~R-------------lplsvl~~eel~~~vdkyL~~ 313 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRR-------------LPLSVLNGEELKEIVDKYLRP 313 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchh-------------ccHHHhCcchhHHHHHHHHHH
Confidence 999998888887777665 222222222444444444333321100 0000000000000 0111111
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCC
Q psy3224 852 AVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANP 931 (1278)
Q Consensus 852 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p 931 (1278)
.++.. -+.+...+-.+|. +|....+.-.++.-+...-.-........ .-...|
T Consensus 314 ~l~Kg--~p~vf~dl~SLyk------------------~p~k~~~le~Lvt~y~~~L~~~~~f~~~D-------~~~~E~ 366 (700)
T KOG1156|consen 314 LLSKG--VPSVFKDLRSLYK------------------DPEKVAFLEKLVTSYQHSLSGTGMFNFLD-------DGKQEP 366 (700)
T ss_pred HhhcC--CCchhhhhHHHHh------------------chhHhHHHHHHHHHHHhhcccccCCCccc-------ccccCC
Confidence 11110 0000111111110 01111111111111100000000000000 001124
Q ss_pred CcHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHH
Q psy3224 932 NSEEIWL--AAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKG 1008 (1278)
Q Consensus 932 ~~~~~~~--~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 1008 (1278)
....+|. .++.-+-..|+++.|..+++.++...|+ .+.++.-|+++...|++++|..++.++.+++-.+--+-...|
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcA 446 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCA 446 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHH
Confidence 4444554 3555566677777777777777777776 466667777777777777777777777776655555555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-------CHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy3224 1009 QIEEQKNLLDKAHDTFSQAIKKCPH-------SVPLWIML--ANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVE 1079 (1278)
Q Consensus 1009 ~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~l--a~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~ 1079 (1278)
....+.++.++|..+........-+ ---.|+.+ |..|.++|++..|+.-|..+-+......+--+.+-..+
T Consensus 447 KYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc 526 (700)
T KOG1156|consen 447 KYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYC 526 (700)
T ss_pred HHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHH
Confidence 6666777777777665554432211 12245544 66777777777777777666555444333334444455
Q ss_pred HHcCCHHHHHHHHHHH--HHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcc----hhhhhhhhhhhhccccccc
Q psy3224 1080 IRAGLKDIANTMMAKA--LQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPH----VLLAVSKLFWCENKNQKCH 1153 (1278)
Q Consensus 1080 ~~~g~~~~A~~~~~ka--l~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~----~~~~~~~l~~~~~~~~~A~ 1153 (1278)
.+.|....-.++++-. +...|....+-.. |+++|-++-.+|. ....++++. .+.+...+.
T Consensus 527 ~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~-------------Ai~iYl~l~d~p~~~~~~~~~~~~ms-~e~kk~~~k 592 (700)
T KOG1156|consen 527 MRKGTLRSYVELLEWEDNLRSSPYYLRAAKG-------------AIEIYLRLHDSPNMYTNKADEIEKMS-DEEKKIKKK 592 (700)
T ss_pred HhcCcHHHHHHHHHHHHhhccChHHHHHHHH-------------HHHHHHHHhcCcccccccchhhhhcc-HHHHHHHHH
Confidence 5566555554444322 2222322111111 3333333333331 000001100 000000000
Q ss_pred c-----cCc--cccccccchhhhhh-h---hCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhCCCChhHHHHHHHH
Q psy3224 1154 R-----SGS--RRCMGVKTKSVDAL-K---KCEHDPHVLLAVSKLFWCENK-NQKCREWFNRTVKIDPDLGDAWAYFYKF 1221 (1278)
Q Consensus 1154 ~-----~~~--~~~~~~~~~a~~~l-~---~~p~~~~~l~~lg~~~~~~g~-~~~A~~~~~kal~~~P~~~d~~~~l~~~ 1221 (1278)
. ... .....+.......- . ..++++ .+|.-+....+ .++|.+++......-++.+..+..-..+
T Consensus 593 ~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~----~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~el 668 (700)
T KOG1156|consen 593 QRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED----PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFEL 668 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc----chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHH
Confidence 0 000 00000000000000 1 112333 45666655555 4689999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCcchhhh
Q psy3224 1222 EIINGTEETQAEVKKRCLAAEPKHGENWCR 1251 (1278)
Q Consensus 1222 ~~~~G~~~~A~~~l~ka~~~~P~~~~~w~~ 1251 (1278)
+...|.+.-+..+++++....+.++.+...
T Consensus 669 y~rk~k~~l~~~~~~~~~~~~~~~~~l~~s 698 (700)
T KOG1156|consen 669 YYRKGKFLLALACLNNAEGIHGTHPSLHTS 698 (700)
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCcchhc
Confidence 999999999999999999999988866543
No 55
>KOG0624|consensus
Probab=99.80 E-value=5.8e-17 Score=171.05 Aligned_cols=316 Identities=12% Similarity=0.066 Sum_probs=254.7
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHH
Q psy3224 856 CPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEE 935 (1278)
Q Consensus 856 ~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~ 935 (1278)
+|.+..-++.+|.-++..|++..|+..|..+++.+|++..+++..+.+|..+|....|+.-+.+++ ...|+...
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVl------elKpDF~~ 107 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVL------ELKPDFMA 107 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHH------hcCccHHH
Confidence 445666788888888889999999999999999999988889999999999999999999998887 78888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------------HHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 936 IWLAAVKLESENNEYERARRLLAKARASAPT--------------PRVMI--QSAKLEWCLDNLERALQLLDEAIKVFPD 999 (1278)
Q Consensus 936 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--------------~~~~~--~la~~~~~~g~~~~A~~~l~~al~~~p~ 999 (1278)
+....+.++.++|.+++|..-|...++.+|+ .+.|. .....+...|+...|+.+....++..|-
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W 187 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW 187 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc
Confidence 8999999999999999999999999988885 11222 2233345678999999999999999999
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH----
Q psy3224 1000 FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAA---- 1075 (1278)
Q Consensus 1000 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l---- 1075 (1278)
+..++...+.+|...|++..|+.-++.+-++..++.+.++.++.+++..|+.+.++.....+++++|++...+-.+
T Consensus 188 da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 188 DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLK 267 (504)
T ss_pred hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999876542221
Q ss_pred --------HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHH----HhccCCCCChhHHHHHHHHhccCcchhhhhhhhh
Q psy3224 1076 --------IRVEIRAGLKDIANTMMAKALQECPNAGILWAEA----IFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLF 1143 (1278)
Q Consensus 1076 --------~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~----~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~ 1143 (1278)
+.-....+++.++++..++.++.+|..+.+.+.. -.++...+++.+|+..-.
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~---------------- 331 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK---------------- 331 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH----------------
Confidence 2223456777778888888888887754433322 223344555555554433
Q ss_pred hhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHH
Q psy3224 1144 WCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYF 1218 (1278)
Q Consensus 1144 ~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l 1218 (1278)
+.|+..|+|..++...|..|+....|+.|+.-|++|++.+++|..+...+
T Consensus 332 -------------------------evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 332 -------------------------EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred -------------------------HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 23456677888999999999999999999999999999999998765544
No 56
>KOG0548|consensus
Probab=99.80 E-value=6.4e-17 Score=182.16 Aligned_cols=416 Identities=16% Similarity=0.125 Sum_probs=224.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHH
Q psy3224 750 MEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIW 829 (1278)
Q Consensus 750 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~ 829 (1278)
...++..+..|+|+.|+.+|..++.++|.|..++.+...++...|++++|..--.+.++++|.-.. .|
T Consensus 6 k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~k------------gy 73 (539)
T KOG0548|consen 6 KEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAK------------GY 73 (539)
T ss_pred HHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhh------------HH
Confidence 345677888999999999999999999999999999999999999999998888888888888754 46
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q psy3224 830 LRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNE 909 (1278)
Q Consensus 830 l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~ 909 (1278)
...+....-.|+|++|+..|.+.|+.+|++..+...++.++... .+. ...+. .+.+|..++..-....-
T Consensus 74 ~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~----~~~------~~~~~-~p~~~~~l~~~p~t~~~ 142 (539)
T KOG0548|consen 74 SRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED----YAA------DQLFT-KPYFHEKLANLPLTNYS 142 (539)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH----HHh------hhhcc-CcHHHHHhhcChhhhhh
Confidence 66666677788888899999999999998888888888877211 111 11111 23334333322211110
Q ss_pred H-HHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHH--HHHHHHHH-----hCCC---------------
Q psy3224 910 Y-ERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERAR--RLLAKARA-----SAPT--------------- 966 (1278)
Q Consensus 910 ~-~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~--~~l~~al~-----~~p~--------------- 966 (1278)
. +.+...+... +..+|.+...+..--++....|....+- ..+..... ..|.
T Consensus 143 ~~~~~~~~~l~~------~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~e 216 (539)
T KOG0548|consen 143 LSDPAYVKILEI------IQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTE 216 (539)
T ss_pred hccHHHHHHHHH------hhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHH
Confidence 0 1111111111 1333333322221000000000000000 00000000 0000
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q psy3224 967 -------PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVP--- 1036 (1278)
Q Consensus 967 -------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 1036 (1278)
..-...+|...+...++..|++.|..++.++ .+...+...+-+|...|.+.+++.....+++..-....
T Consensus 217 e~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~k 295 (539)
T KOG0548|consen 217 ERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYK 295 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHH
Confidence 1223344555555556666666666666665 55555555555666666655555555555544332111
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCCHHHHHHHHHHHHHcCCHH
Q psy3224 1037 ----LWIMLANLEERRKMLIKARSVLEKGRLR--------------------------NPNCAELWLAAIRVEIRAGLKD 1086 (1278)
Q Consensus 1037 ----~~~~la~l~~~~g~~~~A~~~l~kal~~--------------------------~p~~~~~~~~l~~~~~~~g~~~ 1086 (1278)
....+|..+...++++.|+.+|++++.. +|.-..--...+.-++..|++.
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYP 375 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHH
Confidence 1112233444455555666666555543 3333333334444555556666
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHh-ccCcchhhhhhhhhhhhcccccccccCccccccccc
Q psy3224 1087 IANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKC-EHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKT 1165 (1278)
Q Consensus 1087 ~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~-~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~ 1165 (1278)
.|+..|.+++..+|+++.+|.+++.++.+.+.+..|+...+++ ..+|.
T Consensus 376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~------------------------------- 424 (539)
T KOG0548|consen 376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN------------------------------- 424 (539)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-------------------------------
Confidence 6666666666666666666666665555555555555554444 22222
Q ss_pred hhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHH
Q psy3224 1166 KSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKR 1237 (1278)
Q Consensus 1166 ~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~k 1237 (1278)
....+..-|.++....+|++|++.|+.+++.+|++.++..++.++...........++.++
T Consensus 425 -----------~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 425 -----------FIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 2335555555555556666666666666666666655555555555543222333334444
No 57
>KOG1156|consensus
Probab=99.80 E-value=2.2e-15 Score=172.54 Aligned_cols=493 Identities=15% Similarity=0.116 Sum_probs=323.7
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHH
Q psy3224 649 LETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTC 728 (1278)
Q Consensus 649 l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A 728 (1278)
.++|....+..+.+++..|.+.+.....|......|+.++|...++.++...+.+
T Consensus 20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S------------------------- 74 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS------------------------- 74 (700)
T ss_pred HHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCccc-------------------------
Confidence 3677888888888888888888888888888888888888888887777643333
Q ss_pred HHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 729 QALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVA 808 (1278)
Q Consensus 729 ~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 808 (1278)
.-.|..+|-++....+|++|+++|..|+...|+|..+|..++.+..+.++++.....-.+.++
T Consensus 75 -----------------~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq 137 (700)
T KOG1156|consen 75 -----------------HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ 137 (700)
T ss_pred -----------------chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 348888888888888899999999999999999999999998888888888888888888888
Q ss_pred hCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCcH-----HHHHHHHHHHHHcCCHHHHH
Q psy3224 809 HCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHC---PKSE-----VLWLMGAKSKWLAGDVPAAR 880 (1278)
Q Consensus 809 ~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~---P~~~-----~~~~~la~~~~~~g~~~~A~ 880 (1278)
..|.... .|+..+......|++..|..+++...+.. |... .+.+...+++...|.++.|.
T Consensus 138 l~~~~ra------------~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 138 LRPSQRA------------SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred hhhhhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 8888754 57777777777888888888887777654 3322 34455556667777777777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHH
Q psy3224 881 GILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLES-ENNEYERARRLLAK 959 (1278)
Q Consensus 881 ~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~ 959 (1278)
+.+..--...-+........+.++.+++++++|..+|...+ ..+|++...+..+-.++. -.+..+.-..+|..
T Consensus 206 e~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll------~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ 279 (700)
T KOG1156|consen 206 EHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL------ERNPDNLDYYEGLEKALGKIKDMLEALKALYAI 279 (700)
T ss_pred HHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH------hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 76665443333345555677888888899999999998887 788888888887777764 33333333366666
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh-----
Q psy3224 960 ARASAPTPRVMIQSAKLEWCLDNLERAL-QLLDEAIKVFPDFAKLWMMKGQIEEQKNL---LDKAHDTFSQAIKK----- 1030 (1278)
Q Consensus 960 al~~~p~~~~~~~la~~~~~~g~~~~A~-~~l~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~----- 1030 (1278)
.-+..|.......+........++.... .++...++. .-+.+...+-.+|..... .++-...|...+.-
T Consensus 280 ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~K--g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~ 357 (700)
T KOG1156|consen 280 LSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSK--GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFN 357 (700)
T ss_pred HhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhc--CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCC
Confidence 6666664332222222211112222222 222222222 001122222222211110 01111112222211
Q ss_pred -------CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q psy3224 1031 -------CPHSVPLWI--MLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPN 1101 (1278)
Q Consensus 1031 -------~p~~~~~~~--~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~ 1101 (1278)
.|-.+-+|. .++.-+-..|+++.|..+++.|+...|.-.+.+...++++...|.+++|...+..+.+.+-.
T Consensus 358 ~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 358 FLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 133344555 34666777888888888888888888888888888888888888888888888888888766
Q ss_pred cHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHH
Q psy3224 1102 AGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVL 1181 (1278)
Q Consensus 1102 ~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l 1181 (1278)
+..+-...+....+..+.++|.+.+.+...... .+++++.-.+- .| ..
T Consensus 438 DR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqc------mW------------------------f~ 485 (700)
T KOG1156|consen 438 DRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQC------MW------------------------FQ 485 (700)
T ss_pred hHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhh------HH------------------------Hh
Confidence 666666677777788888888888877733322 23333321111 01 44
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHH
Q psy3224 1182 LAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVK 1235 (1278)
Q Consensus 1182 ~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l 1235 (1278)
..-|..|.+.|++..|++-|..+-++.....+--..+--++.+.|....-.+++
T Consensus 486 ~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll 539 (700)
T KOG1156|consen 486 LEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELL 539 (700)
T ss_pred HhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHH
Confidence 555899999999999999998888776655543333333344455544444443
No 58
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.80 E-value=3.1e-19 Score=202.55 Aligned_cols=262 Identities=23% Similarity=0.243 Sum_probs=124.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q psy3224 829 WLRAAYFEKNHGTRESLETLLQKAVAHC--PKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESE 906 (1278)
Q Consensus 829 ~l~~a~l~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~ 906 (1278)
.+.++.++...|++++|++++.+.+... |+++..|..+|.+.+..++++.|+..|++++...+.++..+..++.+ ..
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 3456788889999999999997766554 88999999999999999999999999999999999988899899988 78
Q ss_pred cCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHcCCH
Q psy3224 907 NNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASA---PTPRVMIQSAKLEWCLDNL 983 (1278)
Q Consensus 907 ~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~---p~~~~~~~la~~~~~~g~~ 983 (1278)
.+++++|..+++++. ... .++..+..++.++...++++++..+++++.... +++.+|..+|.++...|+.
T Consensus 90 ~~~~~~A~~~~~~~~------~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 90 DGDPEEALKLAEKAY------ERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ccccccccccccccc------ccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 999999999998875 433 456778888889999999999999999987654 2478999999999999999
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 984 ERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRL 1063 (1278)
Q Consensus 984 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~ 1063 (1278)
++|+.+|+++++.+|+++.++..++.++...|+++++..++....+..|.++.+|..+|.++...|++++|+.+|++++.
T Consensus 163 ~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 163 DKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy3224 1064 RNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQE 1098 (1278)
Q Consensus 1064 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~ 1098 (1278)
.+|+++.++..++.++...|+.++|..++.+++..
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999998764
No 59
>KOG1174|consensus
Probab=99.80 E-value=4.6e-16 Score=168.26 Aligned_cols=309 Identities=12% Similarity=0.070 Sum_probs=247.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHH
Q psy3224 752 DAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLR 831 (1278)
Q Consensus 752 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~ 831 (1278)
+|.++.....+..+..++-+-....|+|..+...+++++...|+..+|+..|+++...+|.... ..-.
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~------------~MD~ 271 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE------------AMDL 271 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh------------hHHH
Confidence 4555555566666777777888888899999999999999999999988888888888887743 3345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHH
Q psy3224 832 AAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYE 911 (1278)
Q Consensus 832 ~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~ 911 (1278)
+++++...|+++....+....+........-|+--+..++..+++..|+.+-++++..+|.+.+.++..|.++...++.+
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~ 351 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHT 351 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchH
Confidence 66777778888888888888888776666778888888888899999999999999999998999999999999889999
Q ss_pred HHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHH-HHH-HHcCCHHHHHH
Q psy3224 912 RARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSA-KLE-WCLDNLERALQ 988 (1278)
Q Consensus 912 ~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la-~~~-~~~g~~~~A~~ 988 (1278)
+|.-.|+.+. ...|.....|..+..+|...|.+.+|......++...|. ...+..+| .++ ..-.--++|..
T Consensus 352 ~A~IaFR~Aq------~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 352 QAVIAFRTAQ------MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred HHHHHHHHHH------hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH
Confidence 9888888887 778888888888888888888888888888888887765 45555554 333 23345678888
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy3224 989 LLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNC 1068 (1278)
Q Consensus 989 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~ 1068 (1278)
++++++.+.|....+...++.++...|.+..++.++++.+...|++ .++..+|+++...+.+.+|.+.|..|+.++|++
T Consensus 426 f~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 426 FAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 8888888888888888888888888888888888888888888854 478888888888888888888888888888888
Q ss_pred HHHHHHHHHHH
Q psy3224 1069 AELWLAAIRVE 1079 (1278)
Q Consensus 1069 ~~~~~~l~~~~ 1079 (1278)
......+-.++
T Consensus 505 ~~sl~Gl~~lE 515 (564)
T KOG1174|consen 505 KRTLRGLRLLE 515 (564)
T ss_pred hHHHHHHHHHH
Confidence 76644443333
No 60
>KOG0624|consensus
Probab=99.78 E-value=1.6e-15 Score=160.26 Aligned_cols=333 Identities=14% Similarity=0.088 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 709 REHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAY 788 (1278)
Q Consensus 709 ~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 788 (1278)
..-.+..+..+..+|.+..|...|..+++..| ++..+++..|..|+..|+-.-|+.-+.+++++-|+-..+....+.
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp---~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDP---NNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc---hhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence 44566777788888899999999998888654 457789999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhccc-chHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy3224 789 FEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKS-NKKSIW--LRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLM 865 (1278)
Q Consensus 789 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~-~~~~~~--l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 865 (1278)
++.++|.+++|..-|...++.+|.+....-...+- .....| ...+....-.|+...|+.....+++..|-+..++..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 99999999999999999999999765321100000 000111 111122223345555555555555555555555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHH
Q psy3224 866 GAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLES 945 (1278)
Q Consensus 866 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~ 945 (1278)
.+.+|...|+...|+.-+..+-++..++.+.++..+.++...|+...++...+..+ +.+|++-..+-.+-.+
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL------KldpdHK~Cf~~YKkl-- 266 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECL------KLDPDHKLCFPFYKKL-- 266 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHH------ccCcchhhHHHHHHHH--
Confidence 55555555555555555555555555555555555555555555555555544444 4444433322211111
Q ss_pred HcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHH----HHHHHHHHHHcCCHHHHH
Q psy3224 946 ENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKL----WMMKGQIEEQKNLLDKAH 1021 (1278)
Q Consensus 946 ~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~ 1021 (1278)
....+.+ ..+.-....++|.++++..++.++..|..+.+ .-.+..|+...+++.+|+
T Consensus 267 --kKv~K~l-----------------es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 267 --KKVVKSL-----------------ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred --HHHHHHH-----------------HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence 0000000 11222345678888888888888888875433 333556677778888999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 1022 DTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 1022 ~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
....+++..+|+++.++...+..|.....|+.|+.-|++|.+.++++..+
T Consensus 328 qqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 328 QQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 99999999999888888888888888888999999999999888887765
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.77 E-value=8.7e-16 Score=183.34 Aligned_cols=294 Identities=14% Similarity=0.082 Sum_probs=179.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHH
Q psy3224 752 DAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLR 831 (1278)
Q Consensus 752 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~ 831 (1278)
-|......|+++.|.+.+.++.+..|+....++..+.+....|+++.|...+.++
T Consensus 90 ~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a------------------------- 144 (409)
T TIGR00540 90 EALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEA------------------------- 144 (409)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-------------------------
Confidence 3445555666666666666666666655555555566666666665555555544
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcH
Q psy3224 832 AAYFEKNHGTRESLETLLQKAVAHCPKSE-VLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEY 910 (1278)
Q Consensus 832 ~a~l~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~ 910 (1278)
.+..|.+. .+...++.++...|+++.|+..++.+++..|+++.++..++.++...|++
T Consensus 145 ---------------------~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 145 ---------------------AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred ---------------------HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence 44444442 23344455555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCcHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcC
Q psy3224 911 ERARRLLAKARAQAGAFQANPNSEEIWL----AAVKLESENNEYERARRLLAKARASAP-----TPRVMIQSAKLEWCLD 981 (1278)
Q Consensus 911 ~~A~~~l~~al~~~~~l~~~p~~~~~~~----~la~~~~~~g~~~~A~~~l~~al~~~p-----~~~~~~~la~~~~~~g 981 (1278)
+.|...+.+.. +....+...+. ....-+...+..+++...+..+....| ++.++..++..+...|
T Consensus 204 ~~a~~~l~~l~------k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g 277 (409)
T TIGR00540 204 QALDDIIDNMA------KAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD 277 (409)
T ss_pred HHHHHHHHHHH------HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC
Confidence 55555555544 22222221111 111111222333444556666666665 4677777777888888
Q ss_pred CHHHHHHHHHHHHHhCCChHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH
Q psy3224 982 NLERALQLLDEAIKVFPDFAKLW--MMKGQIEEQKNLLDKAHDTFSQAIKKCPHSV--PLWIMLANLEERRKMLIKARSV 1057 (1278)
Q Consensus 982 ~~~~A~~~l~~al~~~p~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~l~~~~g~~~~A~~~ 1057 (1278)
++++|...++++++..|++.... ..........++...+...++++++..|+++ .+...+|+++.+.|++++|+++
T Consensus 278 ~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~ 357 (409)
T TIGR00540 278 DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADA 357 (409)
T ss_pred ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHH
Confidence 88888888888888888776432 2222222345677788888888888888888 7777888888888888888888
Q ss_pred HH--HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy3224 1058 LE--KGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQE 1098 (1278)
Q Consensus 1058 l~--kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~ 1098 (1278)
|+ .++...|++... ..++.++.+.|+.++|..++++++..
T Consensus 358 le~a~a~~~~p~~~~~-~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 358 FKNVAACKEQLDANDL-AMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHhHHhhcCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88 566677766653 57788888888888888888877653
No 62
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.77 E-value=1.5e-15 Score=181.26 Aligned_cols=270 Identities=15% Similarity=0.064 Sum_probs=215.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHh
Q psy3224 828 IWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSE-EIWLAAVKLESE 906 (1278)
Q Consensus 828 ~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-~~~~~la~l~~~ 906 (1278)
..+..+.+....|+++.|.+.+.++.+..|.....++..|.++...|+++.|..+|.++.+..|++. .+....+.++..
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 3445566777889999999999999999998888888999999999999999999999999999864 567778999999
Q ss_pred cCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHH----HHHHHHHHcC
Q psy3224 907 NNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAP-TPRVMI----QSAKLEWCLD 981 (1278)
Q Consensus 907 ~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~----~la~~~~~~g 981 (1278)
.|+++.|+..++.+. ...|+++.++..++.++...|++++|...+.+..+... ++..+. ....-....+
T Consensus 166 ~~~~~~Al~~l~~l~------~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 166 QNELHAARHGVDKLL------EMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred CCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998 88999999999999999999999999999999998743 322111 1111112334
Q ss_pred CHHHHHHHHHHHHHhCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHcCCHHHHH
Q psy3224 982 NLERALQLLDEAIKVFP----DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLW--IMLANLEERRKMLIKAR 1055 (1278)
Q Consensus 982 ~~~~A~~~l~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~--~~la~l~~~~g~~~~A~ 1055 (1278)
..+++...+.++....| +++.++..++..+...|++++|...++++++..|++.... ..........++...++
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHH
Confidence 44555667777777777 5789999999999999999999999999999998876532 11222223357788888
Q ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHHCCCcH
Q psy3224 1056 SVLEKGRLRNPNCA--ELWLAAIRVEIRAGLKDIANTMMA--KALQECPNAG 1103 (1278)
Q Consensus 1056 ~~l~kal~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~--kal~~~P~~~ 1103 (1278)
..++++++..|+++ .+...+|+++.+.|++++|.++|+ .+++..|++.
T Consensus 320 ~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~ 371 (409)
T TIGR00540 320 KLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN 371 (409)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH
Confidence 88888888888888 778888888888899999988888 5666777643
No 63
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=3.7e-15 Score=176.90 Aligned_cols=293 Identities=15% Similarity=0.167 Sum_probs=174.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHH
Q psy3224 751 EDAESCANQGAYECARAIYAQALATFPSKKSIWL-RAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIW 829 (1278)
Q Consensus 751 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~-~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~ 829 (1278)
.-|......|+++.|.+.+.+.-...+. +.+++ ..+.+....|+++.|...|.++.+..|++... ..
T Consensus 89 ~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~-----------~~ 156 (398)
T PRK10747 89 EQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLP-----------VE 156 (398)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHH-----------HH
Confidence 3445555678888888777665554332 33333 33555577888888888888877777776421 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH--------HHH
Q psy3224 830 LRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWL--------AAV 901 (1278)
Q Consensus 830 l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~--------~la 901 (1278)
+..+.+....|+++.|+..++++++..|+++.++..++.+|...|++++|..++.++.+..+.++.... .+.
T Consensus 157 l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~ 236 (398)
T PRK10747 157 ITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLM 236 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 233566677777778888888888888888887788888888888888888777777776655433221 111
Q ss_pred HHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q psy3224 902 KLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLD 981 (1278)
Q Consensus 902 ~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g 981 (1278)
.......+.+...++++..- ...|+++.++..++..+...|+.++|...++++++..+++.+...++.+ ..+
T Consensus 237 ~~~~~~~~~~~l~~~w~~lp------~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l--~~~ 308 (398)
T PRK10747 237 DQAMADQGSEGLKRWWKNQS------RKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL--KTN 308 (398)
T ss_pred HHHHHhcCHHHHHHHHHhCC------HHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc--cCC
Confidence 11111222222223322221 3345566666666666666666666666666666655555444444443 225
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKG 1061 (1278)
Q Consensus 982 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~ka 1061 (1278)
+.++++..+++.++.+|+++.+++.+|.++...+++++|+..|+++++..|++ ..+..++.++...|+.++|..+|+++
T Consensus 309 ~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 309 NPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666643 23445666666666666666666665
Q ss_pred HHh
Q psy3224 1062 RLR 1064 (1278)
Q Consensus 1062 l~~ 1064 (1278)
+.+
T Consensus 388 l~~ 390 (398)
T PRK10747 388 LML 390 (398)
T ss_pred Hhh
Confidence 543
No 64
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.72 E-value=2.3e-14 Score=170.18 Aligned_cols=265 Identities=16% Similarity=0.162 Sum_probs=207.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcC
Q psy3224 830 LRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSE-EIWLAAVKLESENN 908 (1278)
Q Consensus 830 l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-~~~~~la~l~~~~g 908 (1278)
+..+.+....|+++.|.+.+.++-...+.....++..+.+....|+++.|..+|.++.+..|++. ......+.++...|
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g 167 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARN 167 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCC
Confidence 34455556679999999888776665433334444446666899999999999999999999864 34445589999999
Q ss_pred cHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HH--------HHHHHHHHHHH
Q psy3224 909 EYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PR--------VMIQSAKLEWC 979 (1278)
Q Consensus 909 ~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~--------~~~~la~~~~~ 979 (1278)
+++.|...++++. ...|+++.++..++.+|...|++++|+.++.++.+..+. +. ++..+......
T Consensus 168 ~~~~Al~~l~~~~------~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 168 ENHAARHGVDKLL------EVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred CHHHHHHHHHHHH------hcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 889999999999999999999999999999999887653 21 22222222223
Q ss_pred cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLE 1059 (1278)
Q Consensus 980 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~ 1059 (1278)
..+.+....+++......|+++.++..++..+...|+.++|...++++++. |.++.+...++.+ ..++.++++..++
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e 318 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLR 318 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHH
Confidence 334455555555555566778999999999999999999999999999985 4466555555554 3488999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Q psy3224 1060 KGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAG 1103 (1278)
Q Consensus 1060 kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~ 1103 (1278)
+.++.+|+++.++..++.++...+++++|...|+++++..|++.
T Consensus 319 ~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 319 QQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 99999999999999999999999999999999999999988754
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.72 E-value=2.1e-15 Score=186.75 Aligned_cols=249 Identities=14% Similarity=0.002 Sum_probs=205.8
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHH
Q psy3224 841 TRESLETLLQKAVAHCPKSEVLWLMGAKSKWLA---------GDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYE 911 (1278)
Q Consensus 841 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~---------g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~ 911 (1278)
++++|+.+|+++++.+|++..+|..+|.++... +++++|...++++++.+|+++.++..++.++...|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 345699999999999999999998888877643 34789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 912 RARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTP-RVMIQSAKLEWCLDNLERALQLL 990 (1278)
Q Consensus 912 ~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~l 990 (1278)
+|+..|++++ ..+|+++.+|+.++.++...|++++|+..|++++..+|.. ..+..++.+++..|++++|+..+
T Consensus 356 ~A~~~~~~Al------~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 356 VGSLLFKQAN------LLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHH------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999998 8899999999999999999999999999999999999974 44455566677789999999999
Q ss_pred HHHHHhC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy3224 991 DEAIKVF-PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCA 1069 (1278)
Q Consensus 991 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~ 1069 (1278)
++++... |+++.++..+|.++...|++++|+..+.++....|.+...+..++..+...| ++|...+++.++..-..+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 9999875 7888899999999999999999999999998888888888888888888877 477777777665443222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy3224 1070 ELWLAAIRVEIRAGLKDIANTMMAKALQE 1098 (1278)
Q Consensus 1070 ~~~~~l~~~~~~~g~~~~A~~~~~kal~~ 1098 (1278)
.-......++.-.|+.+.+... .++.+.
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2223366677777887777766 555544
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.70 E-value=5.4e-15 Score=183.14 Aligned_cols=258 Identities=10% Similarity=0.021 Sum_probs=208.7
Q ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCH
Q psy3224 948 NEYERARRLLAKARASAPT-PRVMIQSAKLEWCL---------DNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLL 1017 (1278)
Q Consensus 948 g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~---------g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 1017 (1278)
+.+++|+.+|++++..+|+ +..|..++.++... +++++|...++++++.+|+++.++..+|.++...|++
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3567899999999999986 57777777765432 3488999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1018 DKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQ 1097 (1278)
Q Consensus 1018 ~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~ 1097 (1278)
++|+..|+++++.+|+++.+|..+|.++...|++++|+.+|++++.++|.++..+..++.++...|++++|+..+++++.
T Consensus 355 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~ 434 (553)
T PRK12370 355 IVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRS 434 (553)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887766667777788999999999999998
Q ss_pred HC-CCcHHHHHHHHhccCCCCChhHHHHHHHHhc-cCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCC
Q psy3224 1098 EC-PNAGILWAEAIFLEPRPQRKTKSVDALKKCE-HDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCE 1175 (1278)
Q Consensus 1098 ~~-P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~-~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p 1175 (1278)
.. |+++..+..++.++...|++++|...+.++. ..|.
T Consensus 435 ~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~----------------------------------------- 473 (553)
T PRK12370 435 QHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT----------------------------------------- 473 (553)
T ss_pred hccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-----------------------------------------
Confidence 75 7888888889999999999999999988763 2222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchhhhhhh
Q psy3224 1176 HDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCRVAK 1254 (1278)
Q Consensus 1176 ~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w~~~~k 1254 (1278)
+......++..|...| ++|...+++.++..-....-...+..++.-+|+.+.+... +++.+. +.+|.+.-|
T Consensus 474 -~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~----~~~~~~~~~ 544 (553)
T PRK12370 474 -GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE----DNIWFKRWK 544 (553)
T ss_pred -hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc----chHhhhhhh
Confidence 3336777787887777 4777777777664443333334477788889998877655 666554 566665544
No 67
>KOG1129|consensus
Probab=99.70 E-value=7.6e-16 Score=161.79 Aligned_cols=239 Identities=16% Similarity=0.102 Sum_probs=213.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHH
Q psy3224 939 AAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLD 1018 (1278)
Q Consensus 939 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 1018 (1278)
.++.+|.+.|-+.+|.+.++..++..|.++.+..++.+|.+..++..|+..|.+.+..+|.+...+...++++..+++.+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy3224 1019 KAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQE 1098 (1278)
Q Consensus 1019 ~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~ 1098 (1278)
.|.++|+.+++.+|.+.++...++.-|.-.++.+-|+.+|.+.+++.-.+++++.+++.++.-.++++-++..|.+++..
T Consensus 308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 308 DALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred HHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 99999999999999999988888888888999999999999999999999999999999999999999999999998876
Q ss_pred CCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCH
Q psy3224 1099 CPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDP 1178 (1278)
Q Consensus 1099 ~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~ 1178 (1278)
..+.+.. .
T Consensus 388 at~~~~a------------------------------------------------------------------------a 395 (478)
T KOG1129|consen 388 ATQPGQA------------------------------------------------------------------------A 395 (478)
T ss_pred ccCcchh------------------------------------------------------------------------h
Confidence 5432211 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchh
Q psy3224 1179 HVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENW 1249 (1278)
Q Consensus 1179 ~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w 1249 (1278)
++|++||.+..-.|++.-|..+|+-|+..+|++++++.+++.+..+.|+.+.|..++..+....|.-.+..
T Consensus 396 DvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~ 466 (478)
T KOG1129|consen 396 DVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVT 466 (478)
T ss_pred hhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccc
Confidence 27888888888889999999999999999999999999999999999999999999999888888655443
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.69 E-value=7.1e-15 Score=167.13 Aligned_cols=242 Identities=12% Similarity=0.039 Sum_probs=183.2
Q ss_pred cCCHHHHHHHHHHHHHhCC---C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHH
Q psy3224 947 NNEYERARRLLAKARASAP---T--PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAH 1021 (1278)
Q Consensus 947 ~g~~~~A~~~l~~al~~~p---~--~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 1021 (1278)
.+..+.++..+.+++...| . +..|+.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3566778888888886433 2 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q psy3224 1022 DTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPN 1101 (1278)
Q Consensus 1022 ~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~ 1101 (1278)
..|+++++++|++..+|..+|.++...|++++|+..|++++..+|+++.... +..+....+++++|+..+.+++...+.
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~~ 197 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLDK 197 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCCc
Confidence 9999999999999999999999999999999999999999999999884322 223445578899999999887765433
Q ss_pred cHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHH
Q psy3224 1102 AGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVL 1181 (1278)
Q Consensus 1102 ~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l 1181 (1278)
....|. ... ...++...+ ..+..+...-. ...+..|..++++
T Consensus 198 ~~~~~~-~~~--~~lg~~~~~-~~~~~~~~~~~----------------------------------~~~~l~~~~~ea~ 239 (296)
T PRK11189 198 EQWGWN-IVE--FYLGKISEE-TLMERLKAGAT----------------------------------DNTELAERLCETY 239 (296)
T ss_pred cccHHH-HHH--HHccCCCHH-HHHHHHHhcCC----------------------------------CcHHHHHHHHHHH
Confidence 322232 222 223333332 23322211000 0011234456699
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCC-CChhHHHHHHHHHHHhCC
Q psy3224 1182 LAVSKLFWCENKNQKCREWFNRTVKIDP-DLGDAWAYFYKFEIINGT 1227 (1278)
Q Consensus 1182 ~~lg~~~~~~g~~~~A~~~~~kal~~~P-~~~d~~~~l~~~~~~~G~ 1227 (1278)
+.+|.++...|++++|+.+|++|++.+| ++.+..+.+..+....+.
T Consensus 240 ~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 240 FYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999996 777777767666655444
No 69
>KOG2376|consensus
Probab=99.68 E-value=3.1e-13 Score=153.55 Aligned_cols=439 Identities=15% Similarity=0.100 Sum_probs=288.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHH
Q psy3224 752 DAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLR 831 (1278)
Q Consensus 752 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~ 831 (1278)
-...+...|+|++|.....+++...|++..+...-..++.+.+.|++|..+.+.-......+. ..+.
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-------------~~fE 84 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-------------FFFE 84 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-------------hhHH
Confidence 344566789999999999999999999999999999999999999998865554322221111 2367
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHH
Q psy3224 832 AAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYE 911 (1278)
Q Consensus 832 ~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~ 911 (1278)
.++++.+.+..++|+..++ ..++.+..+....|++++++++|++|..+|+.+++...++.+.-.....+...
T Consensus 85 KAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~----- 156 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA----- 156 (652)
T ss_pred HHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-----
Confidence 7899999999999999998 45666677889999999999999999999999998877654443333222211
Q ss_pred HHHHH-HHHHHHhhhhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------HHHHHHH
Q psy3224 912 RARRL-LAKARAQAGAFQANPN-SEEIWLAAVKLESENNEYERARRLLAKARASAPT----------------PRVMIQS 973 (1278)
Q Consensus 912 ~A~~~-l~~al~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----------------~~~~~~l 973 (1278)
.+... ..+. +...|. +.+..++.+.++...|+|.+|++++++++..+.. ..+...+
T Consensus 157 a~l~~~~~q~------v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl 230 (652)
T KOG2376|consen 157 AALQVQLLQS------VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL 230 (652)
T ss_pred HhhhHHHHHh------ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 00111 1111 144454 7788999999999999999999999999655321 3567778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC---CH-H-HHHHHHHHHHHhCCC----------CHHHH
Q psy3224 974 AKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN---LL-D-KAHDTFSQAIKKCPH----------SVPLW 1038 (1278)
Q Consensus 974 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~-~-~A~~~~~~al~~~p~----------~~~~~ 1038 (1278)
+.++..+|+.++|..+|...++.+|.+..+......-+.... ++ + .++..++......++ -..++
T Consensus 231 ayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~ 310 (652)
T KOG2376|consen 231 AYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIY 310 (652)
T ss_pred HHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999998866544333332221111 11 1 122222222211111 12344
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-HHHHHHHHhccCCCC
Q psy3224 1039 IMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNA-GILWAEAIFLEPRPQ 1117 (1278)
Q Consensus 1039 ~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~-~~~~~~~~~~~~~~~ 1117 (1278)
.+.+.+.+..+..+.+++...+.-...|....--........+...+.+|..++..+.+.+|.+ ..+....+.+....|
T Consensus 311 ~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~g 390 (652)
T KOG2376|consen 311 RNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQG 390 (652)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcC
Confidence 4555555566666666665554433344332211222222233336888999999999999987 556666788888899
Q ss_pred ChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHH
Q psy3224 1118 RKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKC 1197 (1278)
Q Consensus 1118 ~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A 1197 (1278)
+++.|+.+|..... .|.. .+......|.+...+-.++++.++.+-|
T Consensus 391 n~~~A~~il~~~~~-----------~~~s-----------------------s~~~~~~~P~~V~aiv~l~~~~~~~~~a 436 (652)
T KOG2376|consen 391 NPEVALEILSLFLE-----------SWKS-----------------------SILEAKHLPGTVGAIVALYYKIKDNDSA 436 (652)
T ss_pred CHHHHHHHHHHHhh-----------hhhh-----------------------hhhhhccChhHHHHHHHHHHhccCCccH
Confidence 99999999985430 0100 0011112233444455555556655555
Q ss_pred HHHHHHHHh-------hCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchhhh
Q psy3224 1198 REWFNRTVK-------IDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCR 1251 (1278)
Q Consensus 1198 ~~~~~kal~-------~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w~~ 1251 (1278)
...+..|+. -.+..-..|...+.|..++|+.++|...++..++.+|++...-..
T Consensus 437 ~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~ 497 (652)
T KOG2376|consen 437 SAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQ 497 (652)
T ss_pred HHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHH
Confidence 555555544 333334467777888888888888888888888888887765544
No 70
>KOG1129|consensus
Probab=99.67 E-value=3.8e-15 Score=156.58 Aligned_cols=240 Identities=15% Similarity=0.099 Sum_probs=221.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHH
Q psy3224 864 LMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKL 943 (1278)
Q Consensus 864 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~ 943 (1278)
..+|+||.+.|-+.+|...++..++..| .++.+..++++|.+..++..|+.++...+ ...|.+...+...+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gl------d~fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGL------DSFPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhh------hcCCchhhhhhhhHHH
Confidence 5789999999999999999999999998 48999999999999999999999999987 8899999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 944 ESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHD 1022 (1278)
Q Consensus 944 ~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 1022 (1278)
+..++++++|.++|+.+++..|. .+..-..+.-|+..++++-|+.+|.+.+++--.+++++.++|.|+...++++-++.
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHH
Confidence 99999999999999999999886 46666677778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q psy3224 1023 TFSQAIKKCPH---SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQEC 1099 (1278)
Q Consensus 1023 ~~~~al~~~p~---~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~ 1099 (1278)
.|++++....+ -.++|++++.+....|++.-|...|.-++..+|++.+.+.+++.+..+.|+.++|..++..+-...
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999976542 378999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHH
Q psy3224 1100 PNAGILWAEAI 1110 (1278)
Q Consensus 1100 P~~~~~~~~~~ 1110 (1278)
|+-.+...++.
T Consensus 460 P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 460 PDMAEVTTNLQ 470 (478)
T ss_pred cccccccccee
Confidence 98766555443
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.66 E-value=3.1e-14 Score=144.69 Aligned_cols=208 Identities=21% Similarity=0.165 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHH
Q psy3224 861 VLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAA 940 (1278)
Q Consensus 861 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~l 940 (1278)
.+.+.+|.-|+..|++..|..-++++++++|++..+|..++.+|...|+.+.|.+.|++++ ...|++.++++++
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl------sl~p~~GdVLNNY 109 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKAL------SLAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH------hcCCCccchhhhh
Confidence 4566667777777777777777777777777777777777777666666555555555555 5555555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHH
Q psy3224 941 VKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKA 1020 (1278)
Q Consensus 941 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A 1020 (1278)
|.+++.+|++++|...|++++... ..|..+..|.++|.|..+.|+++.|
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P-------------------------------~Y~~~s~t~eN~G~Cal~~gq~~~A 158 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADP-------------------------------AYGEPSDTLENLGLCALKAGQFDQA 158 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCC-------------------------------CCCCcchhhhhhHHHHhhcCCchhH
Confidence 555555555555555544444331 2334456666666666666666666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q psy3224 1021 HDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECP 1100 (1278)
Q Consensus 1021 ~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P 1100 (1278)
...|+++++.+|+.+.....++..+...|++..|+.++++.....+-..+.+...+++....|+-+.+..+=.+....+|
T Consensus 159 ~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP 238 (250)
T COG3063 159 EEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFP 238 (250)
T ss_pred HHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 66666666666666666666666666666666666666666666555555555555666666666666666666666666
Q ss_pred CcHHH
Q psy3224 1101 NAGIL 1105 (1278)
Q Consensus 1101 ~~~~~ 1105 (1278)
.+.+.
T Consensus 239 ~s~e~ 243 (250)
T COG3063 239 YSEEY 243 (250)
T ss_pred CcHHH
Confidence 66544
No 72
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.66 E-value=3.5e-14 Score=161.44 Aligned_cols=232 Identities=13% Similarity=0.044 Sum_probs=175.9
Q ss_pred CCHHHHHHHHHHHHHhCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHH
Q psy3224 840 GTRESLETLLQKAVAHCP----KSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARR 915 (1278)
Q Consensus 840 g~~~~A~~~~~~al~~~P----~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~ 915 (1278)
+..+.++..+.+++...| .....|+.+|.++...|++++|+..|.++++.+|+++.+|..+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 344568888888886444 3357799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 916 LLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIK 995 (1278)
Q Consensus 916 ~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 995 (1278)
.|++++ ..+|++..+|..+|.++...|++++|+..|++++..+|+......+..+....+++++|+..|.+++.
T Consensus 120 ~~~~Al------~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 120 AFDSVL------ELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHH------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999998 88999999999999999999999999999999999988743222222334456789999999977765
Q ss_pred hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Q psy3224 996 VFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQA-------IKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNP-N 1067 (1278)
Q Consensus 996 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-------l~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p-~ 1067 (1278)
..+.. .|. .+.++...|+...+ ..+..+ ++..|....+|+.+|.++...|++++|+.+|++++..+| +
T Consensus 194 ~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 KLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred hCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 54322 222 34444555655433 233333 355666778889999999999999999999999999886 5
Q ss_pred CHHHHHHHHHHHHH
Q psy3224 1068 CAELWLAAIRVEIR 1081 (1278)
Q Consensus 1068 ~~~~~~~l~~~~~~ 1081 (1278)
..+..+.+..+...
T Consensus 270 ~~e~~~~~~e~~~~ 283 (296)
T PRK11189 270 FVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555554443
No 73
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=4.1e-13 Score=142.11 Aligned_cols=283 Identities=14% Similarity=0.114 Sum_probs=239.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHhcCcHHH
Q psy3224 838 NHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNS-----EEIWLAAVKLESENNEYER 912 (1278)
Q Consensus 838 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~la~l~~~~g~~~~ 912 (1278)
..++.++|+++|..+++.+|...++.+.+|.++.+.|..++|+.+.+..+.. |+. ..+...++.-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3466778999999999999999999999999999999999999998887764 432 4467889999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHcCCHHHH
Q psy3224 913 ARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT------PRVMIQSAKLEWCLDNLERA 986 (1278)
Q Consensus 913 A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~------~~~~~~la~~~~~~g~~~~A 986 (1278)
|..+|.... ....--..+...+..+|....++++|+...++..+..+. ...+..++..+....+.+.|
T Consensus 126 AE~~f~~L~------de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 126 AEDIFNQLV------DEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred HHHHHHHHh------cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 999999976 333445677889999999999999999999999998775 57888899999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 987 LQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS-VPLWIMLANLEERRKMLIKARSVLEKGRLRN 1065 (1278)
Q Consensus 987 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~l~~~~g~~~~A~~~l~kal~~~ 1065 (1278)
+..+.++++.+|++..+-+.+|+++...|++.+|++.++.+++.+|.. +.+...+..+|.+.|+.++.+.++.++.+..
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999986 5677788999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccC---CCCChhHHHHHHHHh
Q psy3224 1066 PNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEP---RPQRKTKSVDALKKC 1129 (1278)
Q Consensus 1066 p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~---~~~~~~~A~~~l~k~ 1129 (1278)
++.... ..++.+.....-.+.|..++.+-+...|+-.-.+. ++.+.. ..|+..+.+..++.+
T Consensus 280 ~g~~~~-l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~r-l~~~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 280 TGADAE-LMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHR-LMDYHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred CCccHH-HHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHH-HHHhhhccccccchhhhHHHHHHH
Confidence 876554 55666555566678888899999999997554443 444332 345566667777666
No 74
>KOG1125|consensus
Probab=99.65 E-value=6.9e-15 Score=167.26 Aligned_cols=229 Identities=16% Similarity=0.132 Sum_probs=149.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHH
Q psy3224 832 AAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYE 911 (1278)
Q Consensus 832 ~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~ 911 (1278)
.+..+.+.|+..+|.-+|+.+++.+|.+.++|..+|.+....++-..|+..+.++++++|++..+++.|+..|...|.-.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 34555677888888889999999999999999999999888888888999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHhhhhhhcCCCcHHHHHHHHH-------HHHHcCCHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcC
Q psy3224 912 RARRLLAKARAQAGAFQANPNSEEIWLAAVK-------LESENNEYERARRLLAKARASAP---TPRVMIQSAKLEWCLD 981 (1278)
Q Consensus 912 ~A~~~l~~al~~~~~l~~~p~~~~~~~~la~-------~~~~~g~~~~A~~~l~~al~~~p---~~~~~~~la~~~~~~g 981 (1278)
.|..+|.+-+. ..|........--. -......+.....+|-.+....| ++.+...+|.+|...|
T Consensus 371 ~Al~~L~~Wi~------~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 371 QALKMLDKWIR------NKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred HHHHHHHHHHH------hCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 88888888762 22221110000000 00001112233333433333333 3566666666666666
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKG 1061 (1278)
Q Consensus 982 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~ka 1061 (1278)
+|++|+.+|+.||...|++..+|..||-.+....+..+|+..|.+|+++.|..+.+++++|..++..|.|.+|.++|-.|
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHhCC
Q psy3224 1062 RLRNP 1066 (1278)
Q Consensus 1062 l~~~p 1066 (1278)
+.+.+
T Consensus 525 L~mq~ 529 (579)
T KOG1125|consen 525 LSMQR 529 (579)
T ss_pred HHhhh
Confidence 65543
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.65 E-value=4.3e-14 Score=143.71 Aligned_cols=207 Identities=17% Similarity=0.120 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy3224 826 KSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLES 905 (1278)
Q Consensus 826 ~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~ 905 (1278)
..+.+.++.-+.+.|++..|...++++++.+|++..+|..+|.+|...|+.+.|.+.|++++.+.|++.++++.+|.+++
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 56777888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHH
Q psy3224 906 ENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLE 984 (1278)
Q Consensus 906 ~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~ 984 (1278)
.+|.+++|...|++++.. ...|.....|.+++.|..+.|+++.|...|++++..+|+ +.....++..++..|++-
T Consensus 115 ~qg~~~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 115 AQGRPEEAMQQFERALAD----PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred hCCChHHHHHHHHHHHhC----CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 999999999999999732 334555666777777766666666666666666666654 455555566666666666
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy3224 985 RALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVP 1036 (1278)
Q Consensus 985 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 1036 (1278)
.|..++++.....+-....+...+.+....|+-+.+..+=.+.....|.+.+
T Consensus 191 ~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 191 PARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 6666666555555544555555555555555555555555555555555443
No 76
>KOG1125|consensus
Probab=99.65 E-value=4e-15 Score=169.14 Aligned_cols=251 Identities=18% Similarity=0.153 Sum_probs=215.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHH
Q psy3224 863 WLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVK 942 (1278)
Q Consensus 863 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~ 942 (1278)
-+..|..+++.|++.+|.-+|+.+++.+|.+.++|..||.+....++-..|+..+++++ +.+|++..++..|+.
T Consensus 288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl------~LdP~NleaLmaLAV 361 (579)
T KOG1125|consen 288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCL------ELDPTNLEALMALAV 361 (579)
T ss_pred hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHH------hcCCccHHHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHH---------HHHHcCCHHHHHHHHHHHHHhCC--ChHHHHHHHHHHH
Q psy3224 943 LESENNEYERARRLLAKARASAPTPRVMIQSAK---------LEWCLDNLERALQLLDEAIKVFP--DFAKLWMMKGQIE 1011 (1278)
Q Consensus 943 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~---------~~~~~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~ 1011 (1278)
.|...|.-.+|..++.+-+...|.. .|...+. -......+....++|-.+....| .++++...||.+|
T Consensus 362 SytNeg~q~~Al~~L~~Wi~~~p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 362 SYTNEGLQNQALKMLDKWIRNKPKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred HHhhhhhHHHHHHHHHHHHHhCccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 9999999999999999998877641 1111100 00111234455677778888888 7899999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 1012 EQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTM 1091 (1278)
Q Consensus 1012 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 1091 (1278)
...|+|++|+++|+.||...|++..+|..||-.+....+..+|+..|.+|+++.|....++++++..++.+|.|.+|..+
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCc----------HHHHHHHHhccCCCCChh
Q psy3224 1092 MAKALQECPNA----------GILWAEAIFLEPRPQRKT 1120 (1278)
Q Consensus 1092 ~~kal~~~P~~----------~~~~~~~~~~~~~~~~~~ 1120 (1278)
|-.+|...+.+ ..+|..+-..+...++.+
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 99999887652 356765544444444444
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.64 E-value=7.4e-14 Score=153.31 Aligned_cols=199 Identities=14% Similarity=0.126 Sum_probs=134.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHH
Q psy3224 860 EVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLA 939 (1278)
Q Consensus 860 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~ 939 (1278)
...+..+|.++...|++++|+..+++++...|++..++..++.++...|++++|+..+++++ ...|.+...+..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al------~~~~~~~~~~~~ 104 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRAL------TLNPNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hhCCCCHHHHHH
Confidence 56777888888888888888888888888888888888888888887788888888777776 566777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCC
Q psy3224 940 AVKLESENNEYERARRLLAKARASAP---TPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNL 1016 (1278)
Q Consensus 940 la~~~~~~g~~~~A~~~l~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 1016 (1278)
++.++...|++++|+..|++++...+ ....+..++.++...|++++|...+.+++...|+++..+..++.++...|+
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC
Confidence 77777777777777777777765432 134555556666666666666666666666666555556666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 1017 LDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLR 1064 (1278)
Q Consensus 1017 ~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~ 1064 (1278)
+++|...+++++...|.++..+..++.++...|+.++|..+.+.+...
T Consensus 185 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 185 YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666666666665555555555555555555556666665555554443
No 78
>KOG1914|consensus
Probab=99.63 E-value=6.5e-12 Score=141.18 Aligned_cols=406 Identities=16% Similarity=0.181 Sum_probs=276.2
Q ss_pred CCCcCChhhhHhhhhccCCCcccccchHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCH
Q psy3224 470 GQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSE 549 (1278)
Q Consensus 470 ~~~~~~~~g~ia~a~~~l~~~~~~~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~ 549 (1278)
+.||.|..+|...+| +.+...+++.|..+++.+...|..+.+|...++-++..++|+.-..+|.+.+...- +.
T Consensus 14 e~nP~di~sw~~lir------e~qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nl 86 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIR------EAQTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NL 86 (656)
T ss_pred hcCCccHHHHHHHHH------HHccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hH
Confidence 569999999988776 34445899999999999999999999999999999999999999999999886543 38
Q ss_pred HHHHHHHhc----C-CchHHH----HHHHHHHH---hCCCCHHHHHHHHHchh------------hHHHHHHHHHHHHHh
Q psy3224 550 DLWLEAARL----Q-PVDTAR----AVIAQAVR---HIPTSVRIWIKAADLET------------ETKAKRRVYRKALEH 605 (1278)
Q Consensus 550 ~lwl~~a~L----~-~~~~A~----~~l~kaL~---~~P~s~~lw~~~~~le~------------~~~~A~~ll~rAle~ 605 (1278)
++|..++.. . ....++ +.|+=+++ ..+.|..+|..++++.. ..+..|++|+||+..
T Consensus 87 DLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t 166 (656)
T KOG1914|consen 87 DLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT 166 (656)
T ss_pred hHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC
Confidence 899555431 1 112222 23443443 35788899999988543 356788999999865
Q ss_pred CCCCH-HHHHHHHhcC-----------------CHHHHHHHHHHHHHh-------CCC-----------CHHHHHHHHHh
Q psy3224 606 IPNSV-RLWKAAVELE-----------------DPEDARILLSRAVEC-------CPT-----------SVELWLALARL 649 (1278)
Q Consensus 606 ~P~s~-~Lw~al~~l~-----------------~~e~A~~~l~kal~~-------~P~-----------~~~~w~~la~l 649 (1278)
--.+. .||.-|...+ .|-.|+.+++..... .|. ..++|..++++
T Consensus 167 Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w 246 (656)
T KOG1914|consen 167 PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW 246 (656)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 44444 7998876544 466777766665433 121 23456666654
Q ss_pred cC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHH
Q psy3224 650 ET------------YENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAI 717 (1278)
Q Consensus 650 ~~------------~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~ 717 (1278)
+. -....-+|++++...+..+++|+..+......++. +..... ......+
T Consensus 247 EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l------~~~~~d-------~~~a~~~----- 308 (656)
T KOG1914|consen 247 EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDL------LTEKGD-------VPDAKSL----- 308 (656)
T ss_pred HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHH------HHHhcc-------cccchhh-----
Confidence 31 11223457777777788888888877776666551 100000 0000000
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHc
Q psy3224 718 EAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGA---YECARAIYAQALATFPSKK-SIWLRAAYFEKNH 793 (1278)
Q Consensus 718 ~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~P~~~-~~~~~la~~~~~~ 793 (1278)
-.+|..+|+..+.... .....+++.++......-+ ++....+|++++...-.+. -+|..+.++-.+.
T Consensus 309 -------t~e~~~~yEr~I~~l~--~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~ 379 (656)
T KOG1914|consen 309 -------TDEAASIYERAIEGLL--KENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRA 379 (656)
T ss_pred -------HHHHHHHHHHHHHHHH--HHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHh
Confidence 1333444444433211 1124455666655554433 6677778888877655444 3677888888888
Q ss_pred CCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy3224 794 GTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEK-NHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWL 872 (1278)
Q Consensus 794 g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~-~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~ 872 (1278)
.-.+.|+.+|.++.+..-... .++...+.++. ..++..-|..+|+-.++.+++++..-+.+...+..
T Consensus 380 eGlkaaR~iF~kaR~~~r~~h------------hVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~ 447 (656)
T KOG1914|consen 380 EGLKAARKIFKKAREDKRTRH------------HVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH 447 (656)
T ss_pred hhHHHHHHHHHHHhhccCCcc------------hhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 888888888888876644432 25666666555 45788889999999999999998888888888888
Q ss_pred cCCHHHHHHHHHHHHHh--CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy3224 873 AGDVPAARGILSLAFQA--NPN-SEEIWLAAVKLESENNEYERARRLLAKAR 921 (1278)
Q Consensus 873 ~g~~~~A~~~l~~al~~--~p~-~~~~~~~la~l~~~~g~~~~A~~~l~~al 921 (1278)
.++-..|+.+|++++.. .|+ +.++|......+..-|+...++++-++-.
T Consensus 448 lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 448 LNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred hCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 89888999999998877 333 46788888888888888888877777655
No 79
>KOG2376|consensus
Probab=99.62 E-value=2.1e-11 Score=138.99 Aligned_cols=450 Identities=13% Similarity=0.055 Sum_probs=223.0
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHH
Q psy3224 649 LETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTC 728 (1278)
Q Consensus 649 l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A 728 (1278)
-++|++|.+...+++...|++..+...-..+..+.+.|+.|..+++.-......
T Consensus 25 ~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~-------------------------- 78 (652)
T KOG2376|consen 25 NGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVI-------------------------- 78 (652)
T ss_pred chHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhc--------------------------
Confidence 366777777777777777777777776666667777777776555443211000
Q ss_pred HHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 729 QALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVA 808 (1278)
Q Consensus 729 ~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 808 (1278)
....+..|.++++.+..++|+..++ ..++.+..+....+.++.+++++++|..+|+.+++
T Consensus 79 -----------------~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~k 138 (652)
T KOG2376|consen 79 -----------------NSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAK 138 (652)
T ss_pred -----------------chhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 0111344555555555666655555 23333444555555666666666666666666555
Q ss_pred hCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 809 HCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETL-LQKAVAHCPK-SEVLWLMGAKSKWLAGDVPAARGILSLA 886 (1278)
Q Consensus 809 ~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~-~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~l~~a 886 (1278)
.+.++...- +-.++...- .+... ..+.+...|. +.+..+..|.++...|+|.+|++.++++
T Consensus 139 n~~dd~d~~----------~r~nl~a~~-------a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 139 NNSDDQDEE----------RRANLLAVA-------AALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred cCCchHHHH----------HHHHHHHHH-------HhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 544443210 000000000 00011 2233333443 5667778888888888888888888888
Q ss_pred HHhCCC-------C--------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHH----HHHHHc
Q psy3224 887 FQANPN-------S--------EEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAV----KLESEN 947 (1278)
Q Consensus 887 l~~~p~-------~--------~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la----~~~~~~ 947 (1278)
+.+|-. + ..+...++.++..+|+..+|..+|...+ ..+|.+........ .+-...
T Consensus 202 ~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i------~~~~~D~~~~Av~~NNLva~~~d~ 275 (652)
T KOG2376|consen 202 LRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII------KRNPADEPSLAVAVNNLVALSKDQ 275 (652)
T ss_pred HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH------HhcCCCchHHHHHhcchhhhcccc
Confidence 554421 1 1234556666666677777776666665 44444432222111 111000
Q ss_pred CCHH-HHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC
Q psy3224 948 NEYE-RARRLLAKARASAP-----------TPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN 1015 (1278)
Q Consensus 948 g~~~-~A~~~l~~al~~~p-----------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 1015 (1278)
.-++ .++..++......+ ...++.+.+.+.+..+..+++.+...+.-...|....--........+..
T Consensus 276 ~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~ 355 (652)
T KOG2376|consen 276 NYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREK 355 (652)
T ss_pred ccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHH
Confidence 0011 11111111111111 12344444444444555555555544444444433211111111222222
Q ss_pred CHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHH
Q psy3224 1016 LLDKAHDTFSQAIKKCPHS-VPLWIMLANLEERRKMLIKARSVLEKGRLR-------NPNCAELWLAAIRVEIRAGLKDI 1087 (1278)
Q Consensus 1016 ~~~~A~~~~~~al~~~p~~-~~~~~~la~l~~~~g~~~~A~~~l~kal~~-------~p~~~~~~~~l~~~~~~~g~~~~ 1087 (1278)
.+.+|..++....+.+|.+ ..+.+.++.+...+|+++.|+.++...+.. ....|.+...+..+++..++.+.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~ 435 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS 435 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc
Confidence 4555666666655555554 344445555666666666666665522210 01222222333334444444444
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchh
Q psy3224 1088 ANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKS 1167 (1278)
Q Consensus 1088 A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a 1167 (1278)
|..++..++... +....... ..
T Consensus 436 a~~vl~~Ai~~~---------------------------~~~~t~s~---~l---------------------------- 457 (652)
T KOG2376|consen 436 ASAVLDSAIKWW---------------------------RKQQTGSI---AL---------------------------- 457 (652)
T ss_pred HHHHHHHHHHHH---------------------------HHhcccch---HH----------------------------
Confidence 444444443321 11100000 00
Q ss_pred hhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHH
Q psy3224 1168 VDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKK 1236 (1278)
Q Consensus 1168 ~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ 1236 (1278)
-..+-..+.+..+.|+-++|...++..++.+|++.+++..+.-.+... +.+.|..+-+
T Consensus 458 ----------~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 458 ----------LSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred ----------HhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 003444566667789999999999999999999999888887666544 4566655543
No 80
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.62 E-value=1.9e-13 Score=150.05 Aligned_cols=202 Identities=22% Similarity=0.188 Sum_probs=173.2
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHH
Q psy3224 893 SEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMI 971 (1278)
Q Consensus 893 ~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~ 971 (1278)
....+..++.++...|++++|+..+++++ ...|.+..++..++.++...|++++|+..|++++...|. +..+.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l------~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 103 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKAL------EHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLN 103 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH------HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Confidence 36778888899999999999999999887 778888888899999999999999999999999988775 57888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy3224 972 QSAKLEWCLDNLERALQLLDEAIKVF--PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRK 1049 (1278)
Q Consensus 972 ~la~~~~~~g~~~~A~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g 1049 (1278)
.++.++...|++++|...|++++... +.....+..+|.++...|++++|...|.+++...|.++..+..++.++...|
T Consensus 104 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 104 NYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcC
Confidence 88888889999999999999988753 4556788888999999999999999999999999888888888899999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q psy3224 1050 MLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECP 1100 (1278)
Q Consensus 1050 ~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P 1100 (1278)
++++|..++++++...|.++..+...+.++...|+.++|..+.+.+....|
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 999999999998888888888878888888888999998888877766544
No 81
>KOG3785|consensus
Probab=99.60 E-value=1.7e-12 Score=138.03 Aligned_cols=444 Identities=14% Similarity=0.057 Sum_probs=277.4
Q ss_pred CCHHHHHHHHHHHHHhCC---CCHHHHHHHH--HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 620 EDPEDARILLSRAVECCP---TSVELWLALA--RLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIID 694 (1278)
Q Consensus 620 ~~~e~A~~~l~kal~~~P---~~~~~w~~la--~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~ 694 (1278)
.+|.-|+.+++-.+.... ++..+|++++ ++|+|++|...|.-+.....-+.++|..+|-++.-.|.+.+|..+..
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 356666666655543322 3445666544 46777777777766665544456667777777666677777666655
Q ss_pred HHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 695 RALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALA 774 (1278)
Q Consensus 695 ~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 774 (1278)
++.+. ....+..+..+..+ ++-..-... ..-+. +..+-.+.+|.+....-.|.+|+.+|.+++.
T Consensus 116 ka~k~------pL~~RLlfhlahkl---ndEk~~~~f-h~~Lq------D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 116 KAPKT------PLCIRLLFHLAHKL---NDEKRILTF-HSSLQ------DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred hCCCC------hHHHHHHHHHHHHh---CcHHHHHHH-HHHHh------hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44321 11122222222222 221111111 11111 1123456677777777789999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy3224 775 TFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVA 854 (1278)
Q Consensus 775 ~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~ 854 (1278)
.+|+...+-..++.+|.+..-++-+.+++.--++..|++..+.-+ .....+..-.|.. |..-......
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NL----------kacn~fRl~ngr~--ae~E~k~lad 247 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNL----------KACNLFRLINGRT--AEDEKKELAD 247 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHH----------HHHHHhhhhccch--hHHHHHHHHh
Confidence 999999999999999999999999999999999999998753211 1111222233433 2222222222
Q ss_pred h-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCc
Q psy3224 855 H-CPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNS 933 (1278)
Q Consensus 855 ~-~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~ 933 (1278)
. ....+.+-...-.-+.--.+-+.|++++--.++.-| ++...++..|..+++.++|..+.+. ..|..
T Consensus 248 N~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IP---EARlNL~iYyL~q~dVqeA~~L~Kd---------l~Ptt 315 (557)
T KOG3785|consen 248 NIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIP---EARLNLIIYYLNQNDVQEAISLCKD---------LDPTT 315 (557)
T ss_pred cccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhCh---HhhhhheeeecccccHHHHHHHHhh---------cCCCC
Confidence 1 111111111111111112345678888877777766 4777888889999999999988775 48999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH---HHHhCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHH
Q psy3224 934 EEIWLAAVKLESENNEYERARRLLAK---ARASAPT-------PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKL 1003 (1278)
Q Consensus 934 ~~~~~~la~~~~~~g~~~~A~~~l~~---al~~~p~-------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 1003 (1278)
+.-+...|.+....|+--..++.+.- .++.... ..-...++.+++...++++.+.++...-..+-++...
T Consensus 316 P~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~F 395 (557)
T KOG3785|consen 316 PYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDF 395 (557)
T ss_pred hHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 98888888888877765444433333 3333221 2233445666666778999999998888888888999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHH
Q psy3224 1004 WMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPL-WIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL-WLAAIRVEIR 1081 (1278)
Q Consensus 1004 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~-~~~l~~~~~~ 1081 (1278)
.+++++.+...|++.+|.+.|-+.-...-.+..+ ...++++|...+++.-|-..+-+. ..|..... +...+..++.
T Consensus 396 n~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk 473 (557)
T KOG3785|consen 396 NLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYK 473 (557)
T ss_pred hhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHH
Confidence 9999999999999999999998775444334334 446799999999999998877432 23333333 3344456667
Q ss_pred cCCHHHHHHHHHHHHHHCCCcHHHH
Q psy3224 1082 AGLKDIANTMMAKALQECPNAGILW 1106 (1278)
Q Consensus 1082 ~g~~~~A~~~~~kal~~~P~~~~~~ 1106 (1278)
.+.+--|...|...-..+|+ ++-|
T Consensus 474 ~~eFyyaaKAFd~lE~lDP~-pEnW 497 (557)
T KOG3785|consen 474 ANEFYYAAKAFDELEILDPT-PENW 497 (557)
T ss_pred HHHHHHHHHhhhHHHccCCC-cccc
Confidence 77776677777666556654 3344
No 82
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.59 E-value=5e-12 Score=134.03 Aligned_cols=292 Identities=14% Similarity=0.162 Sum_probs=208.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHH
Q psy3224 756 CANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYF 835 (1278)
Q Consensus 756 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l 835 (1278)
+.-..+.++|+..|.++++.+|...++.+.+++++...|..+.|+.+-+..+.. |+-..
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~-------------------- 103 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTF-------------------- 103 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCch--------------------
Confidence 344567899999999999999999999999999999999999987766554432 22110
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHH
Q psy3224 836 EKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARR 915 (1278)
Q Consensus 836 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~ 915 (1278)
. + -..+...+|+-|+..|-++.|..+|........--..+...+..+|....+|++|+.
T Consensus 104 ---------~----q--------r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId 162 (389)
T COG2956 104 ---------E----Q--------RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAID 162 (389)
T ss_pred ---------H----H--------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHH
Confidence 0 1 112355667777777777777777777766544446667777777777777777777
Q ss_pred HHHHHHHhhhhhhcCCCc-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCHHHHHHH
Q psy3224 916 LLAKARAQAGAFQANPNS-----EEIWLAAVKLESENNEYERARRLLAKARASAPTP-RVMIQSAKLEWCLDNLERALQL 989 (1278)
Q Consensus 916 ~l~~al~~~~~l~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~ 989 (1278)
.-++.. ...+.. ...+..++..+....+.+.|+..+.++++.+|+. .+-+.+|.++...|++++|++.
T Consensus 163 ~A~~L~------k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~ 236 (389)
T COG2956 163 VAERLV------KLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEA 236 (389)
T ss_pred HHHHHH------HcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHH
Confidence 777665 333322 2345567777777888888888888888888864 7777888888888888888888
Q ss_pred HHHHHHhCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy3224 990 LDEAIKVFPDF-AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNC 1068 (1278)
Q Consensus 990 l~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~ 1068 (1278)
++.+++.+|+. +.+.-.+..+|...|+.++.+..+.++.+..+. +.+-..++.+.....-.+.|..++.+-+...|+-
T Consensus 237 ~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~ 315 (389)
T COG2956 237 LERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM 315 (389)
T ss_pred HHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH
Confidence 88888888876 577777888888888888888888888887775 4466667777777777788888888888888865
Q ss_pred HHHHHHHHHHH---HHcCCHHHHHHHHHHHHH
Q psy3224 1069 AELWLAAIRVE---IRAGLKDIANTMMAKALQ 1097 (1278)
Q Consensus 1069 ~~~~~~l~~~~---~~~g~~~~A~~~~~kal~ 1097 (1278)
-.. ..+.... ...|...+....+..++.
T Consensus 316 ~gf-~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 316 RGF-HRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHH-HHHHHhhhccccccchhhhHHHHHHHHH
Confidence 544 2333322 223445566666666643
No 83
>KOG3785|consensus
Probab=99.59 E-value=1.1e-11 Score=132.01 Aligned_cols=419 Identities=12% Similarity=0.078 Sum_probs=263.8
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy3224 717 IEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTR 796 (1278)
Q Consensus 717 ~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~ 796 (1278)
+.+....++..|..+++.......+..+....|+ |.+++..|+|++|...|.-+...+.-+.++|..++.++.-.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWi--a~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWI--AHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHH--HHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 3445566778888888887766555554556664 77888899999999999998887777888999999999999999
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q psy3224 797 ESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDV 876 (1278)
Q Consensus 797 ~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~ 876 (1278)
.+|..+-.+ .|+++.- .++.+ .+....++-++-..+ .+-+. +..+-.+.+|.+....-.|
T Consensus 108 ~eA~~~~~k----a~k~pL~---------~RLlf---hlahklndEk~~~~f-h~~Lq---D~~EdqLSLAsvhYmR~HY 167 (557)
T KOG3785|consen 108 IEAKSIAEK----APKTPLC---------IRLLF---HLAHKLNDEKRILTF-HSSLQ---DTLEDQLSLASVHYMRMHY 167 (557)
T ss_pred HHHHHHHhh----CCCChHH---------HHHHH---HHHHHhCcHHHHHHH-HHHHh---hhHHHHHhHHHHHHHHHHH
Confidence 988776554 3444310 00111 111222332222222 11111 1112244444454444555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHc--CC-----
Q psy3224 877 PAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESEN--NE----- 949 (1278)
Q Consensus 877 ~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~--g~----- 949 (1278)
.+|+++|.+.+.-+|+...+-..++.++.++.-++-+.+++.-.+ ...|+++.+....+....+. |+
T Consensus 168 QeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL------~q~pdStiA~NLkacn~fRl~ngr~ae~E 241 (557)
T KOG3785|consen 168 QEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYL------RQFPDSTIAKNLKACNLFRLINGRTAEDE 241 (557)
T ss_pred HHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH------HhCCCcHHHHHHHHHHHhhhhccchhHHH
Confidence 555555555555555544444555555555555555555555544 44555555544443332221 11
Q ss_pred ----------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH
Q psy3224 950 ----------------------------YERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFA 1001 (1278)
Q Consensus 950 ----------------------------~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 1001 (1278)
-+.|+.++-..+..- |++.++++..|..+++.++|..+... ..|..|
T Consensus 242 ~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I--PEARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP 316 (557)
T KOG3785|consen 242 KKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI--PEARLNLIIYYLNQNDVQEAISLCKD---LDPTTP 316 (557)
T ss_pred HHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhC--hHhhhhheeeecccccHHHHHHHHhh---cCCCCh
Confidence 112222222222221 56777788888899999999888764 588888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy3224 1002 KLWMMKGQIEEQKNLLDKAHDTFSQAI---KKCP------HSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072 (1278)
Q Consensus 1002 ~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p------~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~ 1072 (1278)
.-++..|.+....|+-...++.++-+- ++.. +...-...++.++.-..++++.+.++...-...-++....
T Consensus 317 ~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn 396 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN 396 (557)
T ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 888888888888886554444433332 2221 1233455667777777889999999888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhccccc
Q psy3224 1073 LAAIRVEIRAGLKDIANTMMAKALQECPNAG-ILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQK 1151 (1278)
Q Consensus 1073 ~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~-~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~ 1151 (1278)
+++++.....|++.+|.++|-+.-...-.+. .....++.++.+.++...|-+.+-+......
T Consensus 397 ~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e----------------- 459 (557)
T KOG3785|consen 397 LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSE----------------- 459 (557)
T ss_pred hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchh-----------------
Confidence 9999999999999999999987755442333 3334568888888888888877766643332
Q ss_pred ccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy3224 1152 CHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPD 1210 (1278)
Q Consensus 1152 A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 1210 (1278)
....+-.+|...++.++|=-|-+.|...-.++|+
T Consensus 460 -------------------------~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 460 -------------------------RFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred -------------------------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 1114555677777788887788888888788875
No 84
>PLN02789 farnesyltranstransferase
Probab=99.58 E-value=5.4e-13 Score=151.08 Aligned_cols=253 Identities=14% Similarity=0.111 Sum_probs=206.6
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q psy3224 948 NEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN-LLDKAHDTFSQ 1026 (1278)
Q Consensus 948 g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~ 1026 (1278)
+++.+|..+|..++ ...+..++|+..+.++++++|++..+|...+.++...| ++++++..+.+
T Consensus 34 ~~~~~a~~~~ra~l----------------~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~ 97 (320)
T PLN02789 34 PEFREAMDYFRAVY----------------ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAED 97 (320)
T ss_pred HHHHHHHHHHHHHH----------------HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence 45556666665543 34568889999999999999999999999999999888 67999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Q psy3224 1027 AIKKCPHSVPLWIMLANLEERRKML--IKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGI 1104 (1278)
Q Consensus 1027 al~~~p~~~~~~~~la~l~~~~g~~--~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~ 1104 (1278)
+++.+|++..+|...+.++...|.. ++++.++++++..+|++..+|...+.++...|+++++++.+.++++.+|.+..
T Consensus 98 ~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~s 177 (320)
T PLN02789 98 VAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNS 177 (320)
T ss_pred HHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchh
Confidence 9999999999999999888888864 77899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCC---Chh----HHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCC
Q psy3224 1105 LWAEAIFLEPRPQ---RKT----KSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHD 1177 (1278)
Q Consensus 1105 ~~~~~~~~~~~~~---~~~----~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~ 1177 (1278)
+|..++.+....+ .+. .+++. +..++..+|+|
T Consensus 178 AW~~R~~vl~~~~~l~~~~~~~e~el~y-----------------------------------------~~~aI~~~P~N 216 (320)
T PLN02789 178 AWNQRYFVITRSPLLGGLEAMRDSELKY-----------------------------------------TIDAILANPRN 216 (320)
T ss_pred HHHHHHHHHHhccccccccccHHHHHHH-----------------------------------------HHHHHHhCCCC
Confidence 9998887654432 111 11111 23456778889
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhC------------------CHHHHHHHH
Q psy3224 1178 PHVLLAVSKLFWC----ENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIING------------------TEETQAEVK 1235 (1278)
Q Consensus 1178 ~~~l~~lg~~~~~----~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G------------------~~~~A~~~l 1235 (1278)
..+|+.++.++.. .++..+|...+..++...|+++.++..++.++.... ..++|..++
T Consensus 217 ~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 296 (320)
T PLN02789 217 ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVC 296 (320)
T ss_pred cCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHH
Confidence 9999999999987 456678999999999999999999999999987532 236788888
Q ss_pred HHHHHhCCCCcchhhhhhhccc
Q psy3224 1236 KRCLAAEPKHGENWCRVAKNVS 1257 (1278)
Q Consensus 1236 ~ka~~~~P~~~~~w~~~~k~~~ 1257 (1278)
..+...+|--...|......+.
T Consensus 297 ~~l~~~d~ir~~yw~~~~~~~~ 318 (320)
T PLN02789 297 SELEVADPMRRNYWAWRKSKLP 318 (320)
T ss_pred HHHHhhCcHHHHHHHHHHHhhc
Confidence 8887788888888887665543
No 85
>PLN02789 farnesyltranstransferase
Probab=99.57 E-value=9.4e-13 Score=149.11 Aligned_cols=203 Identities=13% Similarity=0.086 Sum_probs=105.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCH
Q psy3224 872 LAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENN-EYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEY 950 (1278)
Q Consensus 872 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g-~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 950 (1278)
..+..++|+..+.+++.++|++..+|...+.++..++ .+++++..+.+++ ..+|++..+|...+.++...+..
T Consensus 49 ~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i------~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVA------EDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHH------HHCCcchHHhHHHHHHHHHcCch
Confidence 3444455555555555555555555555555554444 3455555555554 44555555555554444444432
Q ss_pred --HHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc---CCH----HHH
Q psy3224 951 --ERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQK---NLL----DKA 1020 (1278)
Q Consensus 951 --~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~----~~A 1020 (1278)
++++.++.+++..+|. ..+|...+.++...|+++++++++.++++.+|.+..+|...+.++... |.+ +.+
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 4445555555555553 355555555555555555555555555555555555555555554433 111 345
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy3224 1021 HDTFSQAIKKCPHSVPLWIMLANLEER----RKMLIKARSVLEKGRLRNPNCAELWLAAIRVEI 1080 (1278)
Q Consensus 1021 ~~~~~~al~~~p~~~~~~~~la~l~~~----~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~ 1080 (1278)
+.+..+++..+|++..+|..++.++.. .++..+|...+.+++...|.++.++..++.++.
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHH
Confidence 555555666666665566555555554 233344555555555555555555555555554
No 86
>KOG0550|consensus
Probab=99.56 E-value=7.2e-13 Score=144.55 Aligned_cols=283 Identities=16% Similarity=0.069 Sum_probs=194.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHH
Q psy3224 748 TWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKS 827 (1278)
Q Consensus 748 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~ 827 (1278)
-....+..+....+|..|+..|..|++.+|++...|...+..++..++++.|.-..++.+++.|....
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k------------ 118 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK------------ 118 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc------------
Confidence 33445666778888999999999999999999999999999999999998877777777776666542
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Q psy3224 828 IWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQAN---PNSEEIWLAAVKLE 904 (1278)
Q Consensus 828 ~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~---p~~~~~~~~la~l~ 904 (1278)
............++..+|...|+ +..++ ....|+..+++.+... |.....-+.-+.++
T Consensus 119 ~~~r~~~c~~a~~~~i~A~~~~~--------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl 179 (486)
T KOG0550|consen 119 GQLREGQCHLALSDLIEAEEKLK--------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECL 179 (486)
T ss_pred cccchhhhhhhhHHHHHHHHHhh--------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhh
Confidence 11111222222222222322222 00100 1112222222222211 22234445566677
Q ss_pred HhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------HHHHH
Q psy3224 905 SENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-------------PRVMI 971 (1278)
Q Consensus 905 ~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-------------~~~~~ 971 (1278)
.-.++++.|...--..+ +.++.+..+++..+.++...++.+.|+..|++++...|+ -..|.
T Consensus 180 ~~~~~~~~a~~ea~~il------kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDIL------KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhcccchhHHHHHHHHH------hcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 77777777777766665 777777888777777777888888888888888887775 25666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 972 QSAKLEWCLDNLERALQLLDEAIKVFPDF----AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047 (1278)
Q Consensus 972 ~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~ 1047 (1278)
.-|.-.+..|++..|.++|..+|.++|++ ..+|.+.+.+..++|+..+|+...+.+++++|....++...|.++..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 67777778888888888888888888855 56677777788888888888888888888888877788888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q psy3224 1048 RKMLIKARSVLEKGRLRNPN 1067 (1278)
Q Consensus 1048 ~g~~~~A~~~l~kal~~~p~ 1067 (1278)
.++|++|++.|+++++...+
T Consensus 334 le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 88888888888888877655
No 87
>KOG0550|consensus
Probab=99.53 E-value=1.2e-12 Score=142.91 Aligned_cols=264 Identities=15% Similarity=0.100 Sum_probs=216.6
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q psy3224 838 NHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLL 917 (1278)
Q Consensus 838 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l 917 (1278)
....|.+|+..|..|++.+|++...|...+..+...+++++|.-..++.+++.|..+......++++...++..+|...|
T Consensus 61 k~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~ 140 (486)
T KOG0550|consen 61 KQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKL 140 (486)
T ss_pred HHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHh
Confidence 34667789999999999999999999999999999999999999999999999998888888888888888888877666
Q ss_pred HHHHH-----h-------hhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHH
Q psy3224 918 AKARA-----Q-------AGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLE 984 (1278)
Q Consensus 918 ~~al~-----~-------~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~ 984 (1278)
+..-. . .+.....|.....-+..+.++...|++++|...--..+++++. ....+..+.+++...+.+
T Consensus 141 ~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ 220 (486)
T KOG0550|consen 141 KSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNAD 220 (486)
T ss_pred hhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchH
Confidence 53210 0 0011112444455566778888899999999999888888875 477778888888889999
Q ss_pred HHHHHHHHHHHhCCCh------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc
Q psy3224 985 RALQLLDEAIKVFPDF------------AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS----VPLWIMLANLEERR 1048 (1278)
Q Consensus 985 ~A~~~l~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~l~~~~ 1048 (1278)
.|+..|++++.++|+. ...|-.-|.-..+.|++..|.++|..+|.++|++ ..+|...+.+..++
T Consensus 221 ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL 300 (486)
T KOG0550|consen 221 KAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL 300 (486)
T ss_pred HHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc
Confidence 9999999999998865 3456667777888899999999999999999886 45566778888889
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q psy3224 1049 KMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPN 1101 (1278)
Q Consensus 1049 g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~ 1101 (1278)
|+..+|+...+.++.++|.....+...+.++..++++++|.+.|++|++...+
T Consensus 301 grl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 301 GRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred CCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999888888888888999999999999999999887654
No 88
>KOG1914|consensus
Probab=99.52 E-value=1.4e-09 Score=122.85 Aligned_cols=186 Identities=13% Similarity=0.128 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCHH
Q psy3224 910 YERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNE---YERARRLLAKARASAPT--PRVMIQSAKLEWCLDNLE 984 (1278)
Q Consensus 910 ~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~---~~~A~~~l~~al~~~p~--~~~~~~la~~~~~~g~~~ 984 (1278)
.+++..+|++++.. ..-.+..+++.++......-+ .+.....+++++..... ..+|..+..+-.+..-..
T Consensus 309 t~e~~~~yEr~I~~-----l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlk 383 (656)
T KOG1914|consen 309 TDEAASIYERAIEG-----LLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLK 383 (656)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHH
Confidence 44555555555421 111233344444443333222 55566666666655322 355666666666666677
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 985 RALQLLDEAIKVFPDFAKLWMMKGQIE-EQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRL 1063 (1278)
Q Consensus 985 ~A~~~l~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~ 1063 (1278)
.|+.+|.+|-+.--....++..-|.+. ...++..-|..+|+-.++..++++..-..+...+...++-..|+.+|++++.
T Consensus 384 aaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 384 AARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence 777777777654433334444444443 3456777777777777777777777777777777777777777777777776
Q ss_pred h--CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q psy3224 1064 R--NP-NCAELWLAAIRVEIRAGLKDIANTMMAKALQECP 1100 (1278)
Q Consensus 1064 ~--~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P 1100 (1278)
. .| ....+|..+..++..-|+...+..+-++-....|
T Consensus 464 s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 464 SVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 5 32 2336677777777777777777777776666666
No 89
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.51 E-value=1e-10 Score=139.93 Aligned_cols=313 Identities=14% Similarity=0.118 Sum_probs=158.5
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccch
Q psy3224 746 KHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNK 825 (1278)
Q Consensus 746 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~ 825 (1278)
.++.+..+.++...|++++|+..++......++...+....|.++.+.|++++|...+..++..+|++...+.
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~------- 76 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYR------- 76 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH-------
Confidence 3466667777888888888888888877777777777778888888888888888888888877777754211
Q ss_pred HHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCCHHHHHH
Q psy3224 826 KSIWLRAAYFE-----KNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVP-AARGILSLAFQANPNSEEIWLA 899 (1278)
Q Consensus 826 ~~~~l~~a~l~-----~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~-~A~~~l~~al~~~p~~~~~~~~ 899 (1278)
.+.... ....+.+....+|++....+|.+......--.+ .....+. .+..++...+... -|.++..
T Consensus 77 -----~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~-~~g~~F~~~~~~yl~~~l~Kg--vPslF~~ 148 (517)
T PF12569_consen 77 -----GLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF-LEGDEFKERLDEYLRPQLRKG--VPSLFSN 148 (517)
T ss_pred -----HHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhccc-CCHHHHHHHHHHHHHHHHhcC--CchHHHH
Confidence 111111 011245556777777777777653322111111 1111222 2333344444332 2445555
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHH--HHHHHHH
Q psy3224 900 AVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVM--IQSAKLE 977 (1278)
Q Consensus 900 la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~--~~la~~~ 977 (1278)
+-.+|.......-...++.............+.. .......|+..+| +.+++.|
T Consensus 149 lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~------------------------~~~~~~~p~~~lw~~~~lAqhy 204 (517)
T PF12569_consen 149 LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNG------------------------DDEEKEPPSTLLWTLYFLAQHY 204 (517)
T ss_pred HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCc------------------------cccccCCchHHHHHHHHHHHHH
Confidence 5555442222222222222221110000000000 0000011222223 3345555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 978 WCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSV 1057 (1278)
Q Consensus 978 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~ 1057 (1278)
...|++++|+.+++++|...|..+++++..|.++...|++.+|..+++.+-.+++.+-.+-...+..+.+.|++++|...
T Consensus 205 d~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 205 DYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhCCCCH--------HHHH--HHHHHHHHcCCHHHHHHHHHHHHHH
Q psy3224 1058 LEKGRLRNPNCA--------ELWL--AAIRVEIRAGLKDIANTMMAKALQE 1098 (1278)
Q Consensus 1058 l~kal~~~p~~~--------~~~~--~l~~~~~~~g~~~~A~~~~~kal~~ 1098 (1278)
+......+- ++ .+|+ ..|..+.+.|++..|+..|..+.+.
T Consensus 285 ~~~Ftr~~~-~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 285 ASLFTREDV-DPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHhhcCCCC-CcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 544433321 11 1232 2334555555555555555555444
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.51 E-value=2.1e-11 Score=145.78 Aligned_cols=314 Identities=15% Similarity=0.104 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q psy3224 827 SIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESE 906 (1278)
Q Consensus 827 ~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~ 906 (1278)
.+.+..+.+....|++++|++.++.....-++...+.-..|.++...|++++|..+|..++..+|++...+..+..+...
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 34455555566666666666666666666666666666666666666666677777776666666666666665555421
Q ss_pred cCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-H
Q psy3224 907 NNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLE-R 985 (1278)
Q Consensus 907 ~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~-~ 985 (1278)
... ......+....+|+......|.......+...+..-..+. .
T Consensus 85 ~~~-----------------------------------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~ 129 (517)
T PF12569_consen 85 QLQ-----------------------------------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKER 129 (517)
T ss_pred hcc-----------------------------------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHH
Confidence 110 0111233334444444444443211111111111101111 1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------hCCCCHHHH--HHHHHHHHHc
Q psy3224 986 ALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK---------------KCPHSVPLW--IMLANLEERR 1048 (1278)
Q Consensus 986 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------------~~p~~~~~~--~~la~l~~~~ 1048 (1278)
+..++...+.. .-|.++..+-.+|....+..-...++...+. ..|....+| +.++..|...
T Consensus 130 ~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 130 LDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred HHHHHHHHHhc--CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 22222222222 1233333333333322222222222222111 112222234 4557777777
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHH
Q psy3224 1049 KMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKK 1128 (1278)
Q Consensus 1049 g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k 1128 (1278)
|++++|++++++++...|..++++...++++.+.|++.+|...+..+..+++.+..+-...+..+.+.|+.++|.+.+..
T Consensus 208 g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~ 287 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASL 287 (517)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 88888888888888888877777777788888888888888888888777777777777777777777888877777777
Q ss_pred hcc---CcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy3224 1129 CEH---DPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTV 1205 (1278)
Q Consensus 1129 ~~~---~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal 1205 (1278)
... +|.....-..-.| .....|.+|.+.|++..|++.|..+.
T Consensus 288 Ftr~~~~~~~~L~~mQc~W-----------------------------------f~~e~a~a~~r~~~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 288 FTREDVDPLSNLNDMQCMW-----------------------------------FETECAEAYLRQGDYGLALKRFHAVL 332 (517)
T ss_pred hcCCCCCcccCHHHHHHHH-----------------------------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 622 2322222223334 66778999999999999999999999
Q ss_pred hhCCCCh
Q psy3224 1206 KIDPDLG 1212 (1278)
Q Consensus 1206 ~~~P~~~ 1212 (1278)
+.+-+.-
T Consensus 333 k~f~~~~ 339 (517)
T PF12569_consen 333 KHFDDFE 339 (517)
T ss_pred HHHHHHh
Confidence 9755443
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.51 E-value=2.1e-11 Score=143.81 Aligned_cols=316 Identities=15% Similarity=-0.001 Sum_probs=214.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCC
Q psy3224 856 CPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNS---EEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPN 932 (1278)
Q Consensus 856 ~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~ 932 (1278)
+|+++..|..+|.++...|+.+.|...+.++....|.+ .+.....+.++...|++++|...+++++ ..+|.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l------~~~P~ 75 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLL------DDYPR 75 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHCCC
Confidence 67888888888888888888888888888887777644 4456666777788888888888888887 77888
Q ss_pred cHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHH
Q psy3224 933 SEEIWLAAVKLESEN----NEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMK 1007 (1278)
Q Consensus 933 ~~~~~~~la~~~~~~----g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 1007 (1278)
+..++.. +..+... +....+...+.......|. ...+..++.++...|++++|...++++++..|+++.++..+
T Consensus 76 ~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~l 154 (355)
T cd05804 76 DLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAV 154 (355)
T ss_pred cHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 8777664 3333333 4444444444442233443 35666778888999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHH----HHHHH
Q psy3224 1008 GQIEEQKNLLDKAHDTFSQAIKKCPHSV----PLWIMLANLEERRKMLIKARSVLEKGRLRNPNCA-ELWL----AAIRV 1078 (1278)
Q Consensus 1008 a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~-~~~~----~l~~~ 1078 (1278)
+.++...|++++|+.++.+++...|.++ ..|..++.++...|++++|+.+|++++...|... .... .+...
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR 234 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH
Confidence 9999999999999999999998876432 3466789999999999999999999876666222 1111 22223
Q ss_pred HHHcCCHHHHHHH---HHHHHHHCCCc--HHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhccccccc
Q psy3224 1079 EIRAGLKDIANTM---MAKALQECPNA--GILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCH 1153 (1278)
Q Consensus 1079 ~~~~g~~~~A~~~---~~kal~~~P~~--~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~ 1153 (1278)
+...|....+... ........|.. .......+..+...++.+.|...+..+....... ......
T Consensus 235 ~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~---------- 303 (355)
T cd05804 235 LELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSA-DDNKQP---------- 303 (355)
T ss_pred HHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc-Cchhhh----------
Confidence 3334433333322 11211111221 2222346667778888888888888763222100 000000
Q ss_pred ccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy3224 1154 RSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPD 1210 (1278)
Q Consensus 1154 ~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 1210 (1278)
.....+....|.+++..|+++.|+..+..++.+...
T Consensus 304 ---------------------~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~ 339 (355)
T cd05804 304 ---------------------ARDVGLPLAEALYAFAEGNYATALELLGPVRDDLAR 339 (355)
T ss_pred ---------------------HHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 011226778889999999999999999999976543
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.49 E-value=6.8e-11 Score=139.50 Aligned_cols=308 Identities=14% Similarity=-0.005 Sum_probs=161.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy3224 776 FPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAH 855 (1278)
Q Consensus 776 ~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~ 855 (1278)
+|+....+..++.++...|+.+.+...+.++.+..|.+... .......+......|++++|...+++++..
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~ 72 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATE---------RERAHVEALSAWIAGDLPKALALLEQLLDD 72 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCH---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555554433210 112233344445556666666666666666
Q ss_pred CCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCC
Q psy3224 856 CPKSEVLWLMGAKSKWLA----GDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANP 931 (1278)
Q Consensus 856 ~P~~~~~~~~la~~~~~~----g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p 931 (1278)
+|.+..++.. +..+... +....+...+.......|.....+..++.++...|++++|...+++++ ...|
T Consensus 73 ~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al------~~~p 145 (355)
T cd05804 73 YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRAL------ELNP 145 (355)
T ss_pred CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hhCC
Confidence 6666554443 3333322 233333333333223344444455555666666666666666666665 5566
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--hHHHH
Q psy3224 932 NSEEIWLAAVKLESENNEYERARRLLAKARASAPT-----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPD--FAKLW 1004 (1278)
Q Consensus 932 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~ 1004 (1278)
.+..++..++.++...|++++|+.++++++...|. ...|..++.++...|++++|+.+|++++...|. .....
T Consensus 146 ~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~ 225 (355)
T cd05804 146 DDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDL 225 (355)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHH
Confidence 66666666666666666666666666666665442 134555666666777777777777766554441 11111
Q ss_pred H---HHHHHHHHcCCHHHHHHH---HHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C-----
Q psy3224 1005 M---MKGQIEEQKNLLDKAHDT---FSQAIKKCPH--SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPN---C----- 1068 (1278)
Q Consensus 1005 ~---~la~~~~~~g~~~~A~~~---~~~al~~~p~--~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~---~----- 1068 (1278)
. .+...+...|....+..+ ........|. ........+.++...|+.++|...++.+....-. .
T Consensus 226 ~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 305 (355)
T cd05804 226 LDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPAR 305 (355)
T ss_pred hhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHH
Confidence 0 111222233322222222 1111111111 1122234566666777788888777776553322 1
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q psy3224 1069 -AELWLAAIRVEIRAGLKDIANTMMAKALQEC 1099 (1278)
Q Consensus 1069 -~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~ 1099 (1278)
..+....+.++...|++++|...+..++...
T Consensus 306 ~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 306 DVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2334555567777888888888888877654
No 93
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.45 E-value=4.4e-10 Score=123.50 Aligned_cols=292 Identities=15% Similarity=0.119 Sum_probs=169.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHH
Q psy3224 751 EDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWL 830 (1278)
Q Consensus 751 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l 830 (1278)
.-|-.-...|+|.+|.+...+.-+..+.-.-.++..+....+.|+.+.+-.++.++.+..+++.. .+.+
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l-----------~v~l 157 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTL-----------AVEL 157 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchH-----------HHHH
Confidence 34445556788888888888877777777777777788888888888888888888887555542 2456
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-H----HHH
Q psy3224 831 RAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAV-K----LES 905 (1278)
Q Consensus 831 ~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la-~----l~~ 905 (1278)
..+.+....|+++.|..-..++++..|.++.+.....++|...|++.....++.+.-+..--+.+-+..+= . +..
T Consensus 158 trarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~ 237 (400)
T COG3071 158 TRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQ 237 (400)
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHH
Confidence 66777777888888888888888888888888888888888888888888888777665433222111110 0 011
Q ss_pred hcCcHHHH---HHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q psy3224 906 ENNEYERA---RRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDN 982 (1278)
Q Consensus 906 ~~g~~~~A---~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~ 982 (1278)
+..+-..+ ...++..- ..--.++.+-..++.-+.+.|..++|.++.+.+++..-++.+...+.. ...++
T Consensus 238 q~~~~~~~~gL~~~W~~~p------r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~--l~~~d 309 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQP------RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPR--LRPGD 309 (400)
T ss_pred HHhccccchHHHHHHHhcc------HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhh--cCCCC
Confidence 11111111 11222111 112233444455555555555555555555555555444442222211 13344
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 983 LERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGR 1062 (1278)
Q Consensus 983 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal 1062 (1278)
+..-++..++.++..|+++.++..+|.++.+.+.|.+|...|+.+++.-| +...|..+|.++.+.|+..+|.+.++.++
T Consensus 310 ~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 310 PEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred chHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555444 23344555555555555555555555544
No 94
>KOG1840|consensus
Probab=99.44 E-value=2.4e-11 Score=143.28 Aligned_cols=244 Identities=15% Similarity=0.128 Sum_probs=192.7
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhh
Q psy3224 855 HCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQA--------NPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGA 926 (1278)
Q Consensus 855 ~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~ 926 (1278)
..|.-..+...++..|...|+++.|...++.+++. .|.-......+|.+|..++++.+|..+|++|+.....
T Consensus 194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE 273 (508)
T ss_pred CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 35655666777999999999999999999999987 4443444556899999999999999999999866542
Q ss_pred h--hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 927 F--QANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT---------PRVMIQSAKLEWCLDNLERALQLLDEAIK 995 (1278)
Q Consensus 927 l--~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---------~~~~~~la~~~~~~g~~~~A~~~l~~al~ 995 (1278)
. ..+|.-..++..++.+|...|++++|..++++++.+... ...+..++.++...+.+++|..+++++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 2 345666677888999999999999999999999876321 36667778888889999999999998887
Q ss_pred hCC--------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 996 VFP--------DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKC--------PHSVPLWIMLANLEERRKMLIKARSVLE 1059 (1278)
Q Consensus 996 ~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~l~~~~g~~~~A~~~l~ 1059 (1278)
+.- .-+..+.++|.+|...|++++|.++|++|+.+. +.....+..+|..+.+.+++.+|...|.
T Consensus 354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 532 336788899999999999999999999999765 2224466678888888999998888888
Q ss_pred HHHHhC----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy3224 1060 KGRLRN----PNC---AELWLAAIRVEIRAGLKDIANTMMAKALQE 1098 (1278)
Q Consensus 1060 kal~~~----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~kal~~ 1098 (1278)
++..+. |++ ...+.+++.+|..+|+++.|.++..+++..
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 877653 333 356888899999999999999998888743
No 95
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=1.3e-09 Score=119.77 Aligned_cols=283 Identities=16% Similarity=0.134 Sum_probs=213.6
Q ss_pred CCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 810 CPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQA 889 (1278)
Q Consensus 810 ~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 889 (1278)
.|.....|+...+.......+..+......|+|.+|..+..++-+..+.....++.-+......|+.+.|-.++.++-+.
T Consensus 68 ~~~~~~~w~~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~ 147 (400)
T COG3071 68 TPAHTRGWFSRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL 147 (400)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhcc
Confidence 34444455554444445556666777778899999999999998888888888888899999999999999999999998
Q ss_pred CCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C
Q psy3224 890 NPN-SEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAP--T 966 (1278)
Q Consensus 890 ~p~-~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~ 966 (1278)
.++ ...+.+..+.+....|+++.|+..+.++. ...|.++.+.....++|...|++.....++.++.+..- +
T Consensus 148 ~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll------~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~ 221 (400)
T COG3071 148 AGDDTLAVELTRARLLLNRRDYPAARENVDQLL------EMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD 221 (400)
T ss_pred CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHH------HhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh
Confidence 554 46778889999999999999999999998 88999999999999999999999999999998877642 2
Q ss_pred H-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy3224 967 P-------RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039 (1278)
Q Consensus 967 ~-------~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 1039 (1278)
+ .+|..+.+-....+..+.-..+++..-..-.+++.+...++.-+..+|+.++|.++...+++..-+.. +..
T Consensus 222 ~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~ 300 (400)
T COG3071 222 EEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCR 300 (400)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHH
Confidence 1 22222222111122222222344444344446678888888888888999999998888888765432 222
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q psy3224 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPN 1101 (1278)
Q Consensus 1040 ~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~ 1101 (1278)
.+.. ..-++...=++..++.++..|+++.++..+|.++.+.+.+.+|...|+.+++.-|+
T Consensus 301 ~~~~--l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 301 LIPR--LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred HHhh--cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 2222 25677788888888888888888888888888888888888888888888887764
No 96
>KOG1258|consensus
Probab=99.39 E-value=1.4e-08 Score=117.84 Aligned_cols=398 Identities=18% Similarity=0.252 Sum_probs=238.3
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHchh---hHHHHHHHHHHHHHhCCCCHHHHHHHHhc-----CCHHHHHHHHHHHH
Q psy3224 562 DTARAVIAQAVRHIPTSVRIWIKAADLET---ETKAKRRVYRKALEHIPNSVRLWKAAVEL-----EDPEDARILLSRAV 633 (1278)
Q Consensus 562 ~~A~~~l~kaL~~~P~s~~lw~~~~~le~---~~~~A~~ll~rAle~~P~s~~Lw~al~~l-----~~~e~A~~~l~kal 633 (1278)
+.++.+|...|...|....+|+.++..+. ....+..+|++++...|.|++||..|... ++.+.-+..|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 34677888888888988889998888776 45667788888888888888888887654 36777778888887
Q ss_pred HhCCC---CHHHHHHHHHh----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCcc
Q psy3224 634 ECCPT---SVELWLALARL----ETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVE 706 (1278)
Q Consensus 634 ~~~P~---~~~~w~~la~l----~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~ 706 (1278)
..+-. +..+|-.|.+. +++.....+|++.++.--.....++..-.-....... .-.--++.+++.
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~-~~l~~~d~~~~l------- 213 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEE-KILLSIDELIQL------- 213 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCCh-hhhcCHHHHHHH-------
Confidence 77653 45677777764 3455666666666654211111111110000011000 000001111100
Q ss_pred ccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy3224 707 INREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESC-ANQGAYECARAIYAQALATFPSKKSIWLR 785 (1278)
Q Consensus 707 ~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 785 (1278)
..... .. ..+...- ...+.+-.....- ...+.++.+...+.+.+..
T Consensus 214 ---------~~~~~--------~~---~~~~~~~---~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~---------- 260 (577)
T KOG1258|consen 214 ---------RSDVA--------ER---SKITHSQ---EPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI---------- 260 (577)
T ss_pred ---------hhhHH--------hh---hhccccc---ChhHHHHHHHhhccCccchhhHHHHHHHHHHHH----------
Confidence 00000 00 0000000 0000000000000 0011222333222222211
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q psy3224 786 AAYFEKNHGTRESLETLLQKAVAH-----CPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSE 860 (1278)
Q Consensus 786 la~~~~~~g~~~~A~~~l~~al~~-----~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~ 860 (1278)
.-.++...-.....+..++..+.. .|-+. .....|..+..+....|+++...-+|++++--+....
T Consensus 261 ~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~---------aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~ 331 (577)
T KOG1258|consen 261 HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQ---------AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD 331 (577)
T ss_pred HHHHHHhhHhHHHHHHhhhhhccccccccCcccH---------HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH
Confidence 011111222222333333333321 12111 1244688889999999999999999999999888999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHH
Q psy3224 861 VLWLMGAKSKWLAGDVPAARGILSLAFQAN-PNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLA 939 (1278)
Q Consensus 861 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~ 939 (1278)
+.|+.++......|+.+-|..++..+.+.. |..+.+.+..+.+....|++..|..+|++.. ...|....+-..
T Consensus 332 efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~------~e~pg~v~~~l~ 405 (577)
T KOG1258|consen 332 EFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIE------SEYPGLVEVVLR 405 (577)
T ss_pred HHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH------hhCCchhhhHHH
Confidence 999999999999999999999988888754 6778888999999999999999999999987 556888888888
Q ss_pred HHHHHHHcCCHHHHHH---HHHHHHHhCCC----HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q psy3224 940 AVKLESENNEYERARR---LLAKARASAPT----PRVMIQSAKLEW-CLDNLERALQLLDEAIKVFPDFAKLWMMKGQIE 1011 (1278)
Q Consensus 940 la~~~~~~g~~~~A~~---~l~~al~~~p~----~~~~~~la~~~~-~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 1011 (1278)
.+.+..+.|+.+.+.. ++.....-..+ +..+...+.+.. -.++.+.|..++.+++...|.+-.+|..+..+.
T Consensus 406 ~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 406 KINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFE 485 (577)
T ss_pred HHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHH
Confidence 8888888998888884 33322222111 455666666543 356777777777788777777777777777766
Q ss_pred HHcC
Q psy3224 1012 EQKN 1015 (1278)
Q Consensus 1012 ~~~g 1015 (1278)
....
T Consensus 486 ~~~~ 489 (577)
T KOG1258|consen 486 LIQP 489 (577)
T ss_pred HhCC
Confidence 5443
No 97
>KOG1840|consensus
Probab=99.39 E-value=9.4e-11 Score=138.30 Aligned_cols=257 Identities=21% Similarity=0.139 Sum_probs=145.2
Q ss_pred ccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Q psy3224 742 QEDRKHTWMEDAESCANQGAYECARAIYAQALAT--------FPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKS 813 (1278)
Q Consensus 742 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 813 (1278)
.|....+...++..|..+|+|+.|+..++.++.. .|.-......+|.+|...+++.+|+.+|++++
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL------ 268 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEAL------ 268 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH------
Confidence 3444566677899999999999999999999887 22222233334455555555555444444422
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 814 EVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVA-HCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPN 892 (1278)
Q Consensus 814 ~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~-~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 892 (1278)
.+++..+- .+|.-..++..+|.+|...|++.+|..++++++++.-.
T Consensus 269 ---------------------------------~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 269 ---------------------------------TIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred ---------------------------------HHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 11121111 23445567888899999999999999999998876422
Q ss_pred -----C---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhh--hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 893 -----S---EEIWLAAVKLESENNEYERARRLLAKARAQAGA--FQANPNSEEIWLAAVKLESENNEYERARRLLAKARA 962 (1278)
Q Consensus 893 -----~---~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~--l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 962 (1278)
. ...+..++.++...+.+++|..++++++.++.. -..+|.-...+..++.+|..+|++++|.++|+++++
T Consensus 316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 1 234455666666677777777777666544320 011112233344455555555555555555555444
Q ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCC
Q psy3224 963 SAPTPRVMIQSAKLEWCLDNLERALQLLDEAI-KVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKK-------CPHS 1034 (1278)
Q Consensus 963 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al-~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~ 1034 (1278)
.... .. +..+.....+..+|..+.+.+++..|...|.+++.+ .|+.
T Consensus 396 ~~~~--------------------------~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~ 449 (508)
T KOG1840|consen 396 ILRE--------------------------LLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDV 449 (508)
T ss_pred HHHh--------------------------cccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCch
Confidence 3210 00 001112344445555555555555555555555433 2333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1035 VPLWIMLANLEERRKMLIKARSVLEKGRL 1063 (1278)
Q Consensus 1035 ~~~~~~la~l~~~~g~~~~A~~~l~kal~ 1063 (1278)
...+.+|+.+|..+|++++|.++.++++.
T Consensus 450 ~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 450 TYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 45566677777777777777777776663
No 98
>KOG2396|consensus
Probab=99.38 E-value=8.2e-09 Score=116.13 Aligned_cols=112 Identities=17% Similarity=0.298 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHhcC-----CchHHHHHHHHHHH
Q psy3224 499 KARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARLQ-----PVDTARAVIAQAVR 573 (1278)
Q Consensus 499 ~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~L~-----~~~~A~~~l~kaL~ 573 (1278)
.-..+|..++...|.++..|...+....+.+.+.+-..+|.++|..+|+++++|+.++..+ +.+.|+.+|-++|+
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR 168 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLR 168 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhh
Confidence 3456788899999999999999999888888899999999999999999999998887632 36678999999999
Q ss_pred hCCCCHHHHHHHHHchhhHHHHHHHHHHHHHhCCCCH
Q psy3224 574 HIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSV 610 (1278)
Q Consensus 574 ~~P~s~~lw~~~~~le~~~~~A~~ll~rAle~~P~s~ 610 (1278)
.+|+|+.+|..+..++...-.....-.+.+..+..+.
T Consensus 169 ~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~ 205 (568)
T KOG2396|consen 169 FNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDK 205 (568)
T ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 9999999999999988765554555555555555443
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.36 E-value=7.4e-11 Score=130.30 Aligned_cols=187 Identities=13% Similarity=0.032 Sum_probs=136.2
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q psy3224 999 DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSV---PLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAE---LW 1072 (1278)
Q Consensus 999 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~---~~ 1072 (1278)
..+..++.+|..+...|++++|+..|++++...|.++ .+++.+|.++...|++++|+..|++++...|+++. .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 4466677777777777777777777777777776654 45666777777777777777777777777776654 45
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhh
Q psy3224 1073 LAAIRVEIRA--------GLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFW 1144 (1278)
Q Consensus 1073 ~~l~~~~~~~--------g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~ 1144 (1278)
+.++.++... |++++|...|.+++..+|++...+..+..+. ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~--------------~~~~~~----------- 165 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMD--------------YLRNRL----------- 165 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHH--------------HHHHHH-----------
Confidence 6666666554 7888999999999999998876654222110 000000
Q ss_pred hhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---hhHHHHHHHH
Q psy3224 1145 CENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDL---GDAWAYFYKF 1221 (1278)
Q Consensus 1145 ~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~---~d~~~~l~~~ 1221 (1278)
......+|.+|+..|++.+|+..|++++...|+. +++|..++.+
T Consensus 166 ---------------------------------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~ 212 (235)
T TIGR03302 166 ---------------------------------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEA 212 (235)
T ss_pred ---------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHH
Confidence 0034578899999999999999999999998775 4799999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCC
Q psy3224 1222 EIINGTEETQAEVKKRCLAAEP 1243 (1278)
Q Consensus 1222 ~~~~G~~~~A~~~l~ka~~~~P 1243 (1278)
+...|+.++|..+++.+....|
T Consensus 213 ~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 213 YLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999888877665
No 100
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.36 E-value=1.3e-08 Score=112.40 Aligned_cols=451 Identities=16% Similarity=0.131 Sum_probs=259.8
Q ss_pred HHHHHhCCCCHHHHHHHHH----hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCc
Q psy3224 630 SRAVECCPTSVELWLALAR----LETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGV 705 (1278)
Q Consensus 630 ~kal~~~P~~~~~w~~la~----l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~ 705 (1278)
..-++-+|++...|..+.+ .|.++.-+++|++...-.|--+.+|.....-.....++.....+|.+++.-
T Consensus 32 RerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k------ 105 (660)
T COG5107 32 RERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK------ 105 (660)
T ss_pred HHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh------
Confidence 3345556666666666554 355666667777766666666677776666666666677777777666642
Q ss_pred cccHHHHHHHHHHHHHcCC------hhHHHHHHHHHHhcCCCccchHhhHHHHHHHHH---------HcCCHHHHHHHHH
Q psy3224 706 EINREHWFKEAIEAEKAGS------VHTCQALIRAIIGYGVEQEDRKHTWMEDAESCA---------NQGAYECARAIYA 770 (1278)
Q Consensus 706 ~~~~~~~l~~A~~~~~~g~------~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~---------~~g~~~~A~~~~~ 770 (1278)
......|..+..-..+... -.+-.+.|+.++....-++.....|..++.++. .+.+++.-+..|.
T Consensus 106 ~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ 185 (660)
T COG5107 106 SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM 185 (660)
T ss_pred hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 2334455544433222221 112223344444433333445667777766553 3456778888999
Q ss_pred HHHHhCCCCH-HHHHHHHHHHHHcCC-------------HHHHHHHHHHHHHh-------CCchHHHHHhhcccchHHHH
Q psy3224 771 QALATFPSKK-SIWLRAAYFEKNHGT-------------RESLETLLQKAVAH-------CPKSEVLWLMGAKSNKKSIW 829 (1278)
Q Consensus 771 ~al~~~P~~~-~~~~~la~~~~~~g~-------------~~~A~~~l~~al~~-------~p~~~~~~~~~~~~~~~~~~ 829 (1278)
+++..--+|. .+|..+-.+....+. +-.|+..++....+ +|.+....-- .......-|
T Consensus 186 ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK-~~r~s~S~W 264 (660)
T COG5107 186 RALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANK-AARTSDSNW 264 (660)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcc-ccccccchh
Confidence 9998765554 578777666655443 23455555544332 1221110000 111223458
Q ss_pred HHHHHHHHhcCC-------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 830 LRAAYFEKNHGT-------RESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVK 902 (1278)
Q Consensus 830 l~~a~l~~~~g~-------~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 902 (1278)
++.+..+...+- ....--++++++...|-.+++|+.+...+...++-+.|+....+++..+|. +.+.++.
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse 341 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSE 341 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHH
Confidence 888888876532 234455778999999999999999999999999999999999999887775 7778888
Q ss_pred HHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q psy3224 903 LESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLES---ENNEYERARRLLAKARASAPTPRVMIQSAKLEWC 979 (1278)
Q Consensus 903 l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~ 979 (1278)
++...++.+....+|++++.... --+..+.... ..|+++...+++-+-+ +.-..+|+.+...-.+
T Consensus 342 ~yel~nd~e~v~~~fdk~~q~L~----------r~ys~~~s~~~s~~D~N~e~~~Ell~kr~--~k~t~v~C~~~N~v~r 409 (660)
T COG5107 342 YYELVNDEEAVYGCFDKCTQDLK----------RKYSMGESESASKVDNNFEYSKELLLKRI--NKLTFVFCVHLNYVLR 409 (660)
T ss_pred HHhhcccHHHHhhhHHHHHHHHH----------HHHhhhhhhhhccccCCccccHHHHHHHH--hhhhhHHHHHHHHHHH
Confidence 88888888888888887763211 0000000000 0122221222111111 1113445555554455
Q ss_pred cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIE-EQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVL 1058 (1278)
Q Consensus 980 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l 1058 (1278)
..-.+.|+.+|-++-+.--....++..-|.+. ...|++.-|-.+|+-.+...|+++.....+-..+...++-..|+.+|
T Consensus 410 ~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 410 KRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred HhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHH
Confidence 55566666666665554323334444444332 34566666666666666666666555555555556666666666666
Q ss_pred HHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Q psy3224 1059 EKGRLRNPNC--AELWLAAIRVEIRAGLKDIANTMMAKALQECPNA 1102 (1278)
Q Consensus 1059 ~kal~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~ 1102 (1278)
++++..-... ..+|-.++..+..-|+...+..+-++.....|..
T Consensus 490 etsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 490 ETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6655443322 3455666666666666666666666666666654
No 101
>KOG2396|consensus
Probab=99.35 E-value=2.3e-08 Score=112.55 Aligned_cols=102 Identities=15% Similarity=0.167 Sum_probs=86.4
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy3224 997 FPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER--RKMLIKARSVLEKGRLRNPNCAELWLA 1074 (1278)
Q Consensus 997 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~--~g~~~~A~~~l~kal~~~p~~~~~~~~ 1074 (1278)
.|+...+-..+-..+.+.+-+..|+..|.+....-|-+..++..+.++... .-+...++.+|+.++.....++++|..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~ 535 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMD 535 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 456666777777888888999999999999999988888888888877653 234788999999999998899999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Q psy3224 1075 AIRVEIRAGLKDIANTMMAKALQE 1098 (1278)
Q Consensus 1075 l~~~~~~~g~~~~A~~~~~kal~~ 1098 (1278)
+...+..+|..+.+-.+|.+|++.
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHhhccCCCcccccHHHHHHHHh
Confidence 999999999999999999998874
No 102
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.33 E-value=1.1e-10 Score=128.96 Aligned_cols=168 Identities=17% Similarity=0.250 Sum_probs=90.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH---HHH
Q psy3224 933 SEEIWLAAVKLESENNEYERARRLLAKARASAPT----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAK---LWM 1005 (1278)
Q Consensus 933 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~---~~~ 1005 (1278)
....++.+|..+...|++++|+..|++++...|+ ..+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3444455555555555555555555555555443 134455555555555555555555555555554433 344
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHH
Q psy3224 1006 MKGQIEEQK--------NLLDKAHDTFSQAIKKCPHSVPLW-----------------IMLANLEERRKMLIKARSVLEK 1060 (1278)
Q Consensus 1006 ~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~l~~~~g~~~~A~~~l~k 1060 (1278)
.+|.++... |++++|+..|++++..+|++...+ ..++.++...|++.+|+..|++
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~ 191 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFET 191 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 455554433 445555555555555555544332 3445556666666666666666
Q ss_pred HHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q psy3224 1061 GRLRNPNC---AELWLAAIRVEIRAGLKDIANTMMAKALQECP 1100 (1278)
Q Consensus 1061 al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P 1100 (1278)
++...|++ +.+|..++.++...|++++|..+++.+...+|
T Consensus 192 al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 192 VVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 66665543 35566666666666666666666666555544
No 103
>KOG1070|consensus
Probab=99.32 E-value=3.7e-10 Score=139.11 Aligned_cols=246 Identities=18% Similarity=0.226 Sum_probs=184.8
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----CHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy3224 845 LETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQAN-PN----SEEIWLAAVKLESENNEYERARRLLAK 919 (1278)
Q Consensus 845 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~----~~~~~~~la~l~~~~g~~~~A~~~l~~ 919 (1278)
..+-|++.+..+|++.-.|+.|...+...++.++|+++.++|+..- +. -..+|..+..++...|.-+...+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 4456678888888888888888888888888888888888888643 22 256788888888888877777888888
Q ss_pred HHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 920 ARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAP-TPRVMIQSAKLEWCLDNLERALQLLDEAIKVFP 998 (1278)
Q Consensus 920 al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 998 (1278)
|.+ +.+...++..|..+|...+.+++|.++|+.+++... ...+|..++.++..+++-+.|..++.+|++.-|
T Consensus 1523 Acq-------ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1523 ACQ-------YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHH-------hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 752 344556777788888888888888888888888766 467888888888888888888888888888877
Q ss_pred C--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH-HHHH
Q psy3224 999 D--FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRN--PNCA-ELWL 1073 (1278)
Q Consensus 999 ~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~--p~~~-~~~~ 1073 (1278)
. +.++....|++.++.|+.+.++.+|+..+..+|.-.++|..+++...+.|+.+.++.+|++++.+. |... .++-
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 6 667777788888888888888888888888888888888888888888888888888888887764 2222 2344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1074 AAIRVEIRAGLKDIANTMMAKALQ 1097 (1278)
Q Consensus 1074 ~l~~~~~~~g~~~~A~~~~~kal~ 1097 (1278)
.+..++...|+......+=.+|.+
T Consensus 1676 kwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHhcCchhhHHHHHHHHHH
Confidence 444566666766665555555544
No 104
>KOG1258|consensus
Probab=99.32 E-value=3.8e-08 Score=114.31 Aligned_cols=415 Identities=17% Similarity=0.221 Sum_probs=225.2
Q ss_pred CcCChhhhHhhhhccCCCcccccchHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHH
Q psy3224 472 TVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDL 551 (1278)
Q Consensus 472 ~~~~~~g~ia~a~~~l~~~~~~~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~l 551 (1278)
+..+-.+|.+.+.- -....+...++..+...+...|-.---|...|..+.+.|..+++.++|+++++-.|.|+.+
T Consensus 41 ~~~~f~~wt~li~~-----~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~Svdl 115 (577)
T KOG1258|consen 41 DSLDFDAWTTLIQE-----NDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDL 115 (577)
T ss_pred chhcccchHHHHhc-----cCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHH
Confidence 44467778543322 2223455889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc-----CCchHHHHHHHHHHHhCC---CCHHHHHHHHHchh---hHHHHHHHHHHHHHhCCCCH----HHHHHH
Q psy3224 552 WLEAARL-----QPVDTARAVIAQAVRHIP---TSVRIWIKAADLET---ETKAKRRVYRKALEHIPNSV----RLWKAA 616 (1278)
Q Consensus 552 wl~~a~L-----~~~~~A~~~l~kaL~~~P---~s~~lw~~~~~le~---~~~~A~~ll~rAle~~P~s~----~Lw~al 616 (1278)
|+.+... ++++.-+..|++|+..+- .|..+|-.++.++. +......+|+|.++.--... ..|..+
T Consensus 116 W~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~ 195 (577)
T KOG1258|consen 116 WLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQL 195 (577)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHH
Confidence 9887652 123335566666666554 33466666666554 22333344444443211111 111111
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhcCHHHHHHHHHHHHH--hCCC---CHHHHHHHHH-HHHHcCCHHHHH
Q psy3224 617 VELEDPEDARILLSRAVECCPTSVELWLALARLETYENARKVLNKARE--NIPT---DRQIWTTAAK-LEEAHGNNAMVD 690 (1278)
Q Consensus 617 ~~l~~~e~A~~~l~kal~~~P~~~~~w~~la~l~~~~~A~~~l~~al~--~~p~---~~~~~~~la~-~~~~~g~~~~A~ 690 (1278)
++. .|.. + +-..+++...-..... ..+. ..+.|-.-.. +-...+..+.+.
T Consensus 196 l~~----------------~~~~--~------l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~ 251 (577)
T KOG1258|consen 196 LNQ----------------NEEK--I------LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEK 251 (577)
T ss_pred Hhc----------------CChh--h------hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHH
Confidence 111 1100 0 0011111110000000 0000 0000000000 000001112222
Q ss_pred HHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhc-----CCCccchHhhHHHHHHHHHHcCCHHHH
Q psy3224 691 KIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGY-----GVEQEDRKHTWMEDAESCANQGAYECA 765 (1278)
Q Consensus 691 ~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~-----~~~~~~~~~~~~~la~~~~~~g~~~~A 765 (1278)
.++.+.+... ...|. ..-...+.+..++..+.. .+........|..+.......|+++..
T Consensus 252 ~~l~~~~~~~--------~~~~~-------~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~ 316 (577)
T KOG1258|consen 252 TILKRIVSIH--------EKVYQ-------KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRV 316 (577)
T ss_pred HHHHHHHHHH--------HHHHH-------hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHH
Confidence 2222222110 00111 011112222333333331 122233466888888888888999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHH
Q psy3224 766 RAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESL 845 (1278)
Q Consensus 766 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A 845 (1278)
...|++++--+....+.|..++......|+.+-|..++.++.+..-... +.+.+..+.+....|++..|
T Consensus 317 ~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~-----------~~i~L~~a~f~e~~~n~~~A 385 (577)
T KOG1258|consen 317 FILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT-----------PIIHLLEARFEESNGNFDDA 385 (577)
T ss_pred HHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC-----------cHHHHHHHHHHHhhccHHHH
Confidence 9999999888888888888888888888888887777777666543322 23555666677777777777
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCC---CHHHHHHHHHHHH-hcCcHHHHHHHHH
Q psy3224 846 ETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARG---ILSLAFQANPN---SEEIWLAAVKLES-ENNEYERARRLLA 918 (1278)
Q Consensus 846 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~---~l~~al~~~p~---~~~~~~~la~l~~-~~g~~~~A~~~l~ 918 (1278)
..++++.....|....+-+..+.+..+.|+.+.+.. ++.....-.-+ ....+...+.+.. -.++.+.|..++.
T Consensus 386 ~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~ 465 (577)
T KOG1258|consen 386 KVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILL 465 (577)
T ss_pred HHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777777777667777766777777777777776663 22222111110 1223333443322 2355555666666
Q ss_pred HHHHhhhhhhcCCCcHHHHHHHHHHHHHc
Q psy3224 919 KARAQAGAFQANPNSEEIWLAAVKLESEN 947 (1278)
Q Consensus 919 ~al~~~~~l~~~p~~~~~~~~la~~~~~~ 947 (1278)
++. ...|.+...|..+..+....
T Consensus 466 ~~~------~~~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 466 EAN------DILPDCKVLYLELIRFELIQ 488 (577)
T ss_pred Hhh------hcCCccHHHHHHHHHHHHhC
Confidence 655 55566665555555554443
No 105
>KOG1070|consensus
Probab=99.31 E-value=2.6e-10 Score=140.43 Aligned_cols=223 Identities=21% Similarity=0.322 Sum_probs=204.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 876 VPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARR 955 (1278)
Q Consensus 876 ~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 955 (1278)
-.+..+-|++.+...|++.-.|+.+.....+.++.++|+++.++|+..+. ......-..+|..+..++..-|.-+...+
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN-~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTIN-FREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCC-cchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 34456678899999999999999999999999999999999999985431 11122346789999999999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q psy3224 956 LLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH-- 1033 (1278)
Q Consensus 956 ~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 1033 (1278)
.|++|.+.+..-.++..+..+|.....+++|.++|+.+++.+.+...+|..++..++++++-+.|..++.+|++.-|.
T Consensus 1519 VFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1519 VFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 999999999888999999999999999999999999999999988999999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q psy3224 1034 SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQEC 1099 (1278)
Q Consensus 1034 ~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~ 1099 (1278)
+..+....|.+..+.|+.++++.+|+-.+...|.-.++|..|+....++|+.+.++.+|++++.+.
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 788888999999999999999999999999999999999999999999999999999999998765
No 106
>KOG3060|consensus
Probab=99.30 E-value=1.3e-09 Score=112.60 Aligned_cols=206 Identities=13% Similarity=0.094 Sum_probs=166.0
Q ss_pred cCCHHHHHHHHHHHHHhCCC----HHHHHHH---HHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHH
Q psy3224 947 NNEYERARRLLAKARASAPT----PRVMIQS---AKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDK 1019 (1278)
Q Consensus 947 ~g~~~~A~~~l~~al~~~p~----~~~~~~l---a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 1019 (1278)
..+.++..++....+...+. +..|..+ .......|+.+-|..++++....+|.+..+....|..+...|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 44566666666666654432 3444433 3344567889999999999988899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q psy3224 1020 AHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQEC 1099 (1278)
Q Consensus 1020 A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~ 1099 (1278)
|+++|+..++.+|.+..++..-.-+...+|+.-+|++.+...++.++.+.++|..++.+|...|++++|.-++++++-..
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 99999999999999888888777778888888899999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHH
Q psy3224 1100 PNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPH 1179 (1278)
Q Consensus 1100 P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~ 1179 (1278)
|.++.....++.
T Consensus 185 P~n~l~f~rlae-------------------------------------------------------------------- 196 (289)
T KOG3060|consen 185 PFNPLYFQRLAE-------------------------------------------------------------------- 196 (289)
T ss_pred CCcHHHHHHHHH--------------------------------------------------------------------
Confidence 988876665543
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEII 1224 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~ 1224 (1278)
+++++|. ..+++-|+++|.++++++|.+..+|+.++.+...
T Consensus 197 ~~Yt~gg----~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 197 VLYTQGG----AENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred HHHHHhh----HHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 4555553 5578899999999999999888888877655443
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.29 E-value=5.7e-10 Score=138.72 Aligned_cols=255 Identities=10% Similarity=-0.066 Sum_probs=173.1
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcH
Q psy3224 855 HCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSE 934 (1278)
Q Consensus 855 ~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~ 934 (1278)
..|.+..+|..++..+...+++++|..+++.+++..|+...+|+.+|.++.+.+++..+..+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------ 87 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL------------------ 87 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh------------------
Confidence 45666777777777777777777777777777777777777777777666654443333222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc
Q psy3224 935 EIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQK 1014 (1278)
Q Consensus 935 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 1014 (1278)
.++.. .....++ .+.+++...+...+++-.+++.+|.||.+.
T Consensus 88 ------------------------~~l~~-------------~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~ 129 (906)
T PRK14720 88 ------------------------NLIDS-------------FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKL 129 (906)
T ss_pred ------------------------hhhhh-------------cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHc
Confidence 22222 1122233 455555556666777777888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 1015 NLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAK 1094 (1278)
Q Consensus 1015 g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~k 1094 (1278)
|+.++|..+|+++++.+|+++.+...+|..+... +.++|+.++.+|+.. +....++..+..++.+
T Consensus 130 g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k 194 (906)
T PRK14720 130 NENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSK 194 (906)
T ss_pred CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHH
Confidence 8888888888888888888888888888888877 888888888888766 4445678888888888
Q ss_pred HHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhC
Q psy3224 1095 ALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKC 1174 (1278)
Q Consensus 1095 al~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~ 1174 (1278)
.+...|++...+..........-.+..+.
T Consensus 195 ~~~~~~~d~d~f~~i~~ki~~~~~~~~~~--------------------------------------------------- 223 (906)
T PRK14720 195 LVHYNSDDFDFFLRIERKVLGHREFTRLV--------------------------------------------------- 223 (906)
T ss_pred HHhcCcccchHHHHHHHHHHhhhccchhH---------------------------------------------------
Confidence 88888887766553332221110011111
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH-hCCHHHHHHHH
Q psy3224 1175 EHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEII-NGTEETQAEVK 1235 (1278)
Q Consensus 1175 p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~-~G~~~~A~~~l 1235 (1278)
..+.-+=..|...+++++++.+|+.+|+++|.|--+...++.++.. +++.....+++
T Consensus 224 ----~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l 281 (906)
T PRK14720 224 ----GLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYL 281 (906)
T ss_pred ----HHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHH
Confidence 1444455666778889999999999999999998888888888763 44444444443
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.28 E-value=9.7e-09 Score=136.96 Aligned_cols=387 Identities=16% Similarity=0.105 Sum_probs=228.2
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccch
Q psy3224 746 KHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNK 825 (1278)
Q Consensus 746 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~ 825 (1278)
..++...+..+...|++.+|...+..+-.. +.-..+....+......|.+..+...+..+ |.... ...
T Consensus 341 ~~lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~l----p~~~~-------~~~ 408 (903)
T PRK04841 341 PELHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNAL----PWEVL-------LEN 408 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhC----CHHHH-------hcC
Confidence 345556667777778887777655443111 001122333455555667766655554432 21100 000
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--
Q psy3224 826 KSIWLRAAYFEKNHGTRESLETLLQKAVAHCPK---------SEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSE-- 894 (1278)
Q Consensus 826 ~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~---------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-- 894 (1278)
+.+.+..+.+....|+++++...+..+....+. ...+...++.++...|+++.|...+++++...+...
T Consensus 409 ~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 488 (903)
T PRK04841 409 PRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYY 488 (903)
T ss_pred cchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHH
Confidence 112233344445667888888888777654321 123344566777788899999999988887554421
Q ss_pred ---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q psy3224 895 ---EIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT----- 966 (1278)
Q Consensus 895 ---~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----- 966 (1278)
.++..++.++...|+++.|...+.+++...............+..++.++...|++++|...+++++.....
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 568 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQ 568 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc
Confidence 234566777778888888888888887543321111111234456677778888888888888887765211
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q psy3224 967 ----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFP-----DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS--- 1034 (1278)
Q Consensus 967 ----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 1034 (1278)
..++..++.+++..|++++|...+.+++.... .....+..++.++...|+++.|...+.++....+..
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 12344556677777888888888877766432 123445556777777888888888777776543221
Q ss_pred HHHHHH----HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Q psy3224 1035 VPLWIM----LANLEERRKMLIKARSVLEKGRLRNPNCAE----LWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILW 1106 (1278)
Q Consensus 1035 ~~~~~~----la~l~~~~g~~~~A~~~l~kal~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 1106 (1278)
...... ....+...|+.+.|..++.......+.... .+..++.++...|++++|...+.+++......+...
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 111110 123334467777777777665442222211 134566667777777777777777665432111000
Q ss_pred HHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHH
Q psy3224 1107 AEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSK 1186 (1278)
Q Consensus 1107 ~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~ 1186 (1278)
....++..+|.
T Consensus 729 ---------------------------------------------------------------------~~a~~~~~la~ 739 (903)
T PRK04841 729 ---------------------------------------------------------------------DLNRNLILLNQ 739 (903)
T ss_pred ---------------------------------------------------------------------HHHHHHHHHHH
Confidence 00116677899
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChh
Q psy3224 1187 LFWCENKNQKCREWFNRTVKIDPDLGD 1213 (1278)
Q Consensus 1187 ~~~~~g~~~~A~~~~~kal~~~P~~~d 1213 (1278)
++...|+.++|...+.+|+.+....+-
T Consensus 740 a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 740 LYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 999999999999999999998766554
No 109
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.27 E-value=1e-10 Score=117.57 Aligned_cols=123 Identities=10% Similarity=-0.062 Sum_probs=75.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy3224 955 RLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS 1034 (1278)
Q Consensus 955 ~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 1034 (1278)
.+|++++..+|+. +..+|..+...|++++|...|++++..+|.+..+|..+|.++...|++++|+..|.+++..+|++
T Consensus 14 ~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~ 91 (144)
T PRK15359 14 DILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH 91 (144)
T ss_pred HHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 4555555555543 44455566666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy3224 1035 VPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVE 1079 (1278)
Q Consensus 1035 ~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~ 1079 (1278)
+.+|+.+|.++...|++++|+..|++++...|+++..|...+.+.
T Consensus 92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 666666666666666666666666666666666666655555443
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.26 E-value=1e-10 Score=117.52 Aligned_cols=123 Identities=15% Similarity=0.010 Sum_probs=116.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 987 LQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNP 1066 (1278)
Q Consensus 987 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p 1066 (1278)
..+|+++++.+|++ +..+|.++...|++++|...|.+++..+|.+..+|..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46889999999985 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Q psy3224 1067 NCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFL 1112 (1278)
Q Consensus 1067 ~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~ 1112 (1278)
+++..|..++.++...|++++|+..|.+++...|+++..|...+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999766554
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.25 E-value=2.5e-09 Score=133.10 Aligned_cols=262 Identities=10% Similarity=0.063 Sum_probs=192.3
Q ss_pred cchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcc
Q psy3224 743 EDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAK 822 (1278)
Q Consensus 743 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~ 822 (1278)
+.+..+|..++..+...+++++|+.+++.+++.+|+...+|+.+|.++.+.+++..+..+ .++...+.+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~-------- 97 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL-------- 97 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc--------
Confidence 456789999999999999999999999999999999999999999999999998887665 6665555443
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 823 SNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVK 902 (1278)
Q Consensus 823 ~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 902 (1278)
++ .++..+...+...+.+..+++.+|.||-..|+.++|..+|+++++.+|+++.+...+|.
T Consensus 98 ------------------~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY 158 (906)
T PRK14720 98 ------------------KW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLAT 158 (906)
T ss_pred ------------------ch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 22 25666666677788888899999999999999999999999999999999999999999
Q ss_pred HHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------------
Q psy3224 903 LESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT---------------- 966 (1278)
Q Consensus 903 l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---------------- 966 (1278)
.+... ++++|+.++.+|+.. +...+++..+..+.++.+...|.
T Consensus 159 ~~ae~-dL~KA~~m~~KAV~~--------------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 159 SYEEE-DKEKAITYLKKAIYR--------------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHh-hHHHHHHHHHHHHHH--------------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh
Confidence 99998 999999999999732 33555677777777777776664
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy3224 967 -----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041 (1278)
Q Consensus 967 -----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 1041 (1278)
..++.-+-..|...+++++++.++..++..+|.+..+...++.+|. +.|.. ...|+..++.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~----------- 283 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD-HSLLEDYLKM----------- 283 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC-cchHHHHHHH-----------
Confidence 1223333345555666666666666666666666666666666654 22211 2222222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy3224 1042 ANLEERRKMLIKARSVLEKGRLRNPNC 1068 (1278)
Q Consensus 1042 a~l~~~~g~~~~A~~~l~kal~~~p~~ 1068 (1278)
..+--...++..|+..|++.+...+.+
T Consensus 284 s~l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 284 SDIGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred hccccCCccHHHHHHHHHHHeeecCCC
Confidence 111111245577777787777665543
No 112
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.25 E-value=5.1e-08 Score=107.69 Aligned_cols=458 Identities=15% Similarity=0.165 Sum_probs=258.6
Q ss_pred CCCcCChhhhHhhhhccCCCcccccchHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCH
Q psy3224 470 GQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSE 549 (1278)
Q Consensus 470 ~~~~~~~~g~ia~a~~~l~~~~~~~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~ 549 (1278)
+.||+|..+|.+.... ++-.+.+++-|..+++...-.|--+.+|.....-++..++++.-..+|.+.+...- +.
T Consensus 36 kdNPtnI~S~fqLiq~-----~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l-~l 109 (660)
T COG5107 36 KDNPTNILSYFQLIQY-----LETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL-NL 109 (660)
T ss_pred hcCchhHHHHHHHHHH-----HhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-cH
Confidence 4599999999886554 77789999999999999999999999999888877778899999999999887643 48
Q ss_pred HHHHHH---Hh-cCCc--hHHHHHHHH-------HHHhCCCCHHHHHHHHHchh------------hHHHHHHHHHHHHH
Q psy3224 550 DLWLEA---AR-LQPV--DTARAVIAQ-------AVRHIPTSVRIWIKAADLET------------ETKAKRRVYRKALE 604 (1278)
Q Consensus 550 ~lwl~~---a~-L~~~--~~A~~~l~k-------aL~~~P~s~~lw~~~~~le~------------~~~~A~~ll~rAle 604 (1278)
++|..+ ++ .+.. .+++..+-+ .+-+.|.+..+|-.++.+.. ..+..|..|.||+.
T Consensus 110 dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~ 189 (660)
T COG5107 110 DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQ 189 (660)
T ss_pred hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHc
Confidence 899554 44 2211 123332223 33456889999999887443 34667888889886
Q ss_pred hCCCCH-HHHHHHHhcCCHHHHHHHHHHH--HHhCCCCHHHHH-H---HHHhcCHHHHHHHHH-----HHHHhCCCCHHH
Q psy3224 605 HIPNSV-RLWKAAVELEDPEDARILLSRA--VECCPTSVELWL-A---LARLETYENARKVLN-----KARENIPTDRQI 672 (1278)
Q Consensus 605 ~~P~s~-~Lw~al~~l~~~e~A~~~l~ka--l~~~P~~~~~w~-~---la~l~~~~~A~~~l~-----~al~~~p~~~~~ 672 (1278)
.--.+. .||.-|-..+. -++++ ++....-..++. + +-.+.+.....++++ .+-+.......-
T Consensus 190 tP~~nleklW~dy~~fE~------e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 190 TPMGNLEKLWKDYENFEL------ELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred CccccHHHHHHHHHHHHH------HHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 544454 78887655541 12221 122111111111 1 111111111111111 011111112222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHH
Q psy3224 673 WTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMED 752 (1278)
Q Consensus 673 ~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~l 752 (1278)
|+.+.......|-.- .-... .....-++.+++...+ -..++|+.+
T Consensus 264 WlNwIkwE~en~l~L--------------------~~~~~------------~qRi~y~~~q~~~y~~---~~~evw~dy 308 (660)
T COG5107 264 WLNWIKWEMENGLKL--------------------GGRPH------------EQRIHYIHNQILDYFY---YAEEVWFDY 308 (660)
T ss_pred hhhHhhHhhcCCccc--------------------CCCcH------------HHHHHHHHHHHHHHhh---hhHHHHHHH
Confidence 444444433332100 00000 0011112333333222 125688888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHH
Q psy3224 753 AESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRA 832 (1278)
Q Consensus 753 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~ 832 (1278)
.......++-+.|....++++...|. +...++.++...++.+....+|+++.+.-..... +. ..
T Consensus 309 s~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys---~~----------~s 372 (660)
T COG5107 309 SEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYS---MG----------ES 372 (660)
T ss_pred HHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHh---hh----------hh
Confidence 88888888888888777777766664 6777788888888877777777765532110000 00 00
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCcHH
Q psy3224 833 AYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLES-ENNEYE 911 (1278)
Q Consensus 833 a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~-~~g~~~ 911 (1278)
-......|+++...+++-+-. ....-+|..+.....+..-++.|+.+|.++-+..--...+++.-+.++. ..|++.
T Consensus 373 ~~~s~~D~N~e~~~Ell~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ 449 (660)
T COG5107 373 ESASKVDNNFEYSKELLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRA 449 (660)
T ss_pred hhhccccCCccccHHHHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcc
Confidence 000001122211111111111 1233455555555556666777888888776654334455554444433 357777
Q ss_pred HHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCHHHHHH
Q psy3224 912 RARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT---PRVMIQSAKLEWCLDNLERALQ 988 (1278)
Q Consensus 912 ~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~la~~~~~~g~~~~A~~ 988 (1278)
-|..+|+-.+ ...|+++..-..+...+...++-..|+.+|++++..-.. ..+|-.+......-|+...+..
T Consensus 450 ta~~ifelGl------~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~s 523 (660)
T COG5107 450 TAYNIFELGL------LKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYS 523 (660)
T ss_pred hHHHHHHHHH------HhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHh
Confidence 7777777765 667777776677777777777777777777766654322 3556666666666666666666
Q ss_pred HHHHHHHhCCC
Q psy3224 989 LLDEAIKVFPD 999 (1278)
Q Consensus 989 ~l~~al~~~p~ 999 (1278)
+=++.....|.
T Consensus 524 Le~rf~e~~pQ 534 (660)
T COG5107 524 LEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHcCc
Confidence 66666666664
No 113
>KOG3060|consensus
Probab=99.24 E-value=2.2e-09 Score=110.91 Aligned_cols=199 Identities=15% Similarity=0.142 Sum_probs=111.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCC---HHHHH---HHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHH
Q psy3224 873 AGDVPAARGILSLAFQANPNS---EEIWL---AAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESE 946 (1278)
Q Consensus 873 ~g~~~~A~~~l~~al~~~p~~---~~~~~---~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~ 946 (1278)
..+.++..++....+.-.+.. .+.|. .........+..+-|..++.+.. ...|.+..+-...|..+..
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~------~~fp~S~RV~~lkam~lEa 98 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLR------DRFPGSKRVGKLKAMLLEA 98 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHH------HhCCCChhHHHHHHHHHHH
Confidence 345566666666555433221 22333 33333445566666666666655 4456666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 947 NNEYERARRLLAKARASAPTP-RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFS 1025 (1278)
Q Consensus 947 ~g~~~~A~~~l~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 1025 (1278)
.|++++|+++|+..++.+|+. .++....-+...+|+.-+|++.+...+..++.+.++|..++.+|...|+|++|.-+|+
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 666666666666666666653 3333334444555655566666666666666666666666666666666666666666
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 1026 QAIKKCPHSVPLWIMLANLEERRK---MLIKARSVLEKGRLRNPNCAELWLAAIR 1077 (1278)
Q Consensus 1026 ~al~~~p~~~~~~~~la~l~~~~g---~~~~A~~~l~kal~~~p~~~~~~~~l~~ 1077 (1278)
+++-..|.++..+..++.++.-.| ++.-|+++|.++++++|.+...|+.+..
T Consensus 179 E~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~l 233 (289)
T KOG3060|consen 179 ELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYL 233 (289)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHH
Confidence 666666666666666666555433 3445566666666666654444444433
No 114
>KOG4340|consensus
Probab=99.21 E-value=3.8e-09 Score=110.65 Aligned_cols=305 Identities=13% Similarity=0.058 Sum_probs=167.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHH
Q psy3224 756 CANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYF 835 (1278)
Q Consensus 756 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l 835 (1278)
+....+|..|+.++..-.+.+|.+...+..++.+|....++..|..+|++.-...|.... .-+..+..
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q------------YrlY~AQS 87 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ------------YRLYQAQS 87 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH------------HHHHHHHH
Confidence 456678999999999999999999999999999999888888877777777766666543 22333444
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHH
Q psy3224 836 EKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARR 915 (1278)
Q Consensus 836 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~ 915 (1278)
..+.+.+..|+.+...+.....-.....-.-+-+....+++..++.+.++.-. .+.....+..+.+..+.|+++.|.+
T Consensus 88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHH
Confidence 44455555555555444321000111122223333445555555555444310 1234555556666666666666666
Q ss_pred HHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCH--HHHHHHHHHHHHcCCH-HHHHH
Q psy3224 916 LLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAS----APTP--RVMIQSAKLEWCLDNL-ERALQ 988 (1278)
Q Consensus 916 ~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~--~~~~~la~~~~~~g~~-~~A~~ 988 (1278)
-|+.++ +...-++-+-+.++.+..+.+++..|+++...+++. .|.- ..-.....+ ...|+. .-+..
T Consensus 166 kFqaAl------qvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt~~lh~S 238 (459)
T KOG4340|consen 166 KFQAAL------QVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNTLVLHQS 238 (459)
T ss_pred HHHHHH------hhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccchHHHHHH
Confidence 666665 444445555555566666666666666555554443 2220 000000000 000110 00000
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 989 LLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP--HSVPLWIMLANLEERRKMLIKARSVLEKGRLRNP 1066 (1278)
Q Consensus 989 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p 1066 (1278)
.+ .+++...+-++.+.++++.|.+.+...--... -++..+.+++..- ..+++.....-+.-.+.++|
T Consensus 239 al----------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 239 AL----------VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred HH----------HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC
Confidence 00 24445556677788888888775433211110 1244444444322 24556666666777777788
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 1067 NCAELWLAAIRVEIRAGLKDIANTMM 1092 (1278)
Q Consensus 1067 ~~~~~~~~l~~~~~~~g~~~~A~~~~ 1092 (1278)
-.++.+.++..++++..-++-|..++
T Consensus 308 fP~ETFANlLllyCKNeyf~lAADvL 333 (459)
T KOG4340|consen 308 FPPETFANLLLLYCKNEYFDLAADVL 333 (459)
T ss_pred CChHHHHHHHHHHhhhHHHhHHHHHH
Confidence 77777777777777776666665543
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.21 E-value=1.3e-09 Score=115.72 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=124.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHH
Q psy3224 941 VKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKA 1020 (1278)
Q Consensus 941 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A 1020 (1278)
+-+|...|+++......++.. .|.. -+...++.++++..++++++.+|+++..|..+|.++...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~--~~~~--------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA--DPLH--------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh--Cccc--------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 345667777776544432221 1100 011256778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1021 HDTFSQAIKKCPHSVPLWIMLANLE-ERRKM--LIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQ 1097 (1278)
Q Consensus 1021 ~~~~~~al~~~p~~~~~~~~la~l~-~~~g~--~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~ 1097 (1278)
...|.+++...|+++.++..+|.++ ...|+ .++|+.+++++++.+|+++.++..++..+...|++++|+..++++++
T Consensus 93 ~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 93 LLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999864 67777 59999999999999999999999999999999999999999999999
Q ss_pred HCCCcH
Q psy3224 1098 ECPNAG 1103 (1278)
Q Consensus 1098 ~~P~~~ 1103 (1278)
..|.+.
T Consensus 173 l~~~~~ 178 (198)
T PRK10370 173 LNSPRV 178 (198)
T ss_pred hCCCCc
Confidence 887754
No 116
>KOG1128|consensus
Probab=99.20 E-value=5.4e-10 Score=130.71 Aligned_cols=223 Identities=17% Similarity=0.117 Sum_probs=187.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHH
Q psy3224 857 PKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEI 936 (1278)
Q Consensus 857 P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~ 936 (1278)
|........++.++...|-...|..+|++ ...|-..+.+|...|+..+|..+..+-+ + .|.++.+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~l------e-k~~d~~l 459 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQEL------E-KDPDPRL 459 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHh------c-CCCcchh
Confidence 34445667888899999999999999987 4677888888999998899988888865 4 6778888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCC
Q psy3224 937 WLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNL 1016 (1278)
Q Consensus 937 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 1016 (1278)
|..+|.+.....-+++|.++.+.. +..+...++......++++++...++..++++|-....|+.+|.+..+.++
T Consensus 460 yc~LGDv~~d~s~yEkawElsn~~-----sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 460 YCLLGDVLHDPSLYEKAWELSNYI-----SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred HHHhhhhccChHHHHHHHHHhhhh-----hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence 888888766655555555555433 234555566666678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 1017 LDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKAL 1096 (1278)
Q Consensus 1017 ~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal 1096 (1278)
++.|...|..++...|++...|.+++..|...++..+|...+.+|++.+-++..+|.++..+....|.+++|+..|.+.+
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999987
Q ss_pred HHC
Q psy3224 1097 QEC 1099 (1278)
Q Consensus 1097 ~~~ 1099 (1278)
...
T Consensus 615 ~~~ 617 (777)
T KOG1128|consen 615 DLR 617 (777)
T ss_pred Hhh
Confidence 653
No 117
>KOG1128|consensus
Probab=99.19 E-value=3.5e-10 Score=132.26 Aligned_cols=219 Identities=13% Similarity=0.097 Sum_probs=197.5
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHH
Q psy3224 894 EEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQS 973 (1278)
Q Consensus 894 ~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~l 973 (1278)
..+-..++.++...|-...|+.++++. ..|...+.+|...|+..+|..+..+-++..|++..|..+
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl--------------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~L 463 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL--------------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLL 463 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH--------------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHh
Confidence 445578899999999999999999985 589999999999999999999999999988889999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy3224 974 AKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIK 1053 (1278)
Q Consensus 974 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~ 1053 (1278)
|.+.....-+++|.++.+.. +..+...+|......++|+++...|+..++++|-....|+.+|.+..+.+++..
T Consensus 464 GDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 98877666666666665543 345667777777888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccC
Q psy3224 1054 ARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHD 1132 (1278)
Q Consensus 1054 A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~ 1132 (1278)
|...|.+++.+.|++...|.++...|...|+..+|...+.++++.+-.+..+|.++..+..+.|.++.|+.++.+....
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988433
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.15 E-value=2e-07 Score=124.34 Aligned_cols=345 Identities=16% Similarity=0.076 Sum_probs=237.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch-----HHHHHhhcccch
Q psy3224 752 DAESCANQGAYECARAIYAQALA-TFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKS-----EVLWLMGAKSNK 825 (1278)
Q Consensus 752 la~~~~~~g~~~~A~~~~~~al~-~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~~~~~~~ 825 (1278)
.+......|++..+..++..+-. ....++.+....+.++...|++++|...+..+....+.. ... .
T Consensus 380 ~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~--------~ 451 (903)
T PRK04841 380 HGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTL--------Q 451 (903)
T ss_pred hHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhH--------H
Confidence 34444555666655555443310 011223344555666677788888888887776543221 010 0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q psy3224 826 KSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSE-----VLWLMGAKSKWLAGDVPAARGILSLAFQANPNS------E 894 (1278)
Q Consensus 826 ~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~ 894 (1278)
..+....+.+....|++++|...+++++...|... .++..+|.++...|++++|...+.+++...... .
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~ 531 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYAL 531 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 11222344566778999999999999998655432 345677888889999999999999998764321 2
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C--
Q psy3224 895 EIWLAAVKLESENNEYERARRLLAKARAQAGAFQAN--PNSEEIWLAAVKLESENNEYERARRLLAKARASAP----T-- 966 (1278)
Q Consensus 895 ~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p----~-- 966 (1278)
..+..++.++...|+++.|...+++++......... +....++..++.++...|++++|...+.+++.... .
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 345677888999999999999999998654322111 22234455778888899999999999999987532 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF---AKLWM----MKGQIEEQKNLLDKAHDTFSQAIKKCPHSVP--- 1036 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 1036 (1278)
...+..++.++...|+++.|...+.++....+.. ..... .....+...|+.+.|..++.......+....
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 3555667888999999999999999997754322 11111 1223445688999999988776543322221
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Q psy3224 1037 -LWIMLANLEERRKMLIKARSVLEKGRLRNPN------CAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGI 1104 (1278)
Q Consensus 1037 -~~~~la~l~~~~g~~~~A~~~l~kal~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~ 1104 (1278)
.+..++.++...|++++|...|++++..... ...++..++.++...|+.++|...+.+++......+.
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~ 766 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGF 766 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccch
Confidence 2457788999999999999999999886321 2245778888999999999999999999998866554
No 119
>KOG3617|consensus
Probab=99.15 E-value=2e-06 Score=101.25 Aligned_cols=241 Identities=15% Similarity=0.178 Sum_probs=159.0
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------HHHhhhhCCccccHHHHHHHHHHHH
Q psy3224 649 LETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDR--------ALSSLSANGVEINREHWFKEAIEAE 720 (1278)
Q Consensus 649 l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~--------al~~~~~~~~~~~~~~~l~~A~~~~ 720 (1278)
.|+.+.|.+.++-+ .+..+|-.+|.++.+..+.+-|.-.+-. ++.....++ .+.-...|....
T Consensus 741 iG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~----~e~eakvAvLAi 811 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNG----EEDEAKVAVLAI 811 (1416)
T ss_pred eccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCC----cchhhHHHHHHH
Confidence 37788777665432 2556899999888887776654433211 122111121 133445566678
Q ss_pred HcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy3224 721 KAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLE 800 (1278)
Q Consensus 721 ~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~ 800 (1278)
..|.+++|..+|++.-.. -.+-++|...|.+++|.++-+.-=.. .-...++.++..+...++.+.|+
T Consensus 812 eLgMlEeA~~lYr~ckR~-----------DLlNKlyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRY-----------DLLNKLYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHhhHHHHHHHHHHHHHH-----------HHHHHHHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHH
Confidence 889999999999887542 23456777889999888776532111 12357888899999999999999
Q ss_pred HHHHHH----------HHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy3224 801 TLLQKA----------VAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSK 870 (1278)
Q Consensus 801 ~~l~~a----------l~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 870 (1278)
+.|+++ +..+|.....+....+. +.+|.-.+.+....|+.+.|+.+|..|-. |+.+.++.
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d--~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~ 948 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRD--ESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIK 948 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccc--hHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeE
Confidence 999763 33444444333322222 35566667777778888888888877644 66677777
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhh
Q psy3224 871 WLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGA 926 (1278)
Q Consensus 871 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~ 926 (1278)
.-+|+.++|-.+.++ ..+..+-+.+++.|...|++.+|+..|.+|......
T Consensus 949 C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnA 999 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNA 999 (1416)
T ss_pred eeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 777888887765554 345667788888888888888888888887654443
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.11 E-value=5.6e-09 Score=110.79 Aligned_cols=123 Identities=13% Similarity=0.074 Sum_probs=108.6
Q ss_pred cCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH-HHcCC--HHHHHH
Q psy3224 947 NNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIE-EQKNL--LDKAHD 1022 (1278)
Q Consensus 947 ~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 1022 (1278)
.++.++++..+++++..+|+ ...|..+|.++...|++++|+..|+++++..|+++.++..+|.++ ...|+ .++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 56678888889999998885 689999999999999999999999999999999999999999874 67777 589999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy3224 1023 TFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCA 1069 (1278)
Q Consensus 1023 ~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~ 1069 (1278)
+++++++.+|+++.++..+|..+...|++++|+.+|+++++..|.+.
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999999999999999999999999999999888654
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.10 E-value=6.6e-09 Score=108.95 Aligned_cols=178 Identities=13% Similarity=0.043 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 984 ERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRL 1063 (1278)
Q Consensus 984 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~ 1063 (1278)
..+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+..+...++......|++..|+..+.++..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 33566666667777887777 77888888888888888888888788888887777788888888888888888888888
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhh
Q psy3224 1064 RNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLF 1143 (1278)
Q Consensus 1064 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~ 1143 (1278)
..|+++.+|..++.+|.+.|++++|...|.++++..|+++.
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~--------------------------------------- 169 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPS--------------------------------------- 169 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCch---------------------------------------
Confidence 88888888888888888888888888888888888776543
Q ss_pred hhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q psy3224 1144 WCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEI 1223 (1278)
Q Consensus 1144 ~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~ 1223 (1278)
+++++|..++-.|+++.|..++..+...-+.+..+..+++.+..
T Consensus 170 ------------------------------------~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~ 213 (257)
T COG5010 170 ------------------------------------IANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVG 213 (257)
T ss_pred ------------------------------------hhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHh
Confidence 56666777777777777777777777776667777777777777
Q ss_pred HhCCHHHHHHHHHH
Q psy3224 1224 INGTEETQAEVKKR 1237 (1278)
Q Consensus 1224 ~~G~~~~A~~~l~k 1237 (1278)
..|++..|+.+..+
T Consensus 214 ~~g~~~~A~~i~~~ 227 (257)
T COG5010 214 LQGDFREAEDIAVQ 227 (257)
T ss_pred hcCChHHHHhhccc
Confidence 77777777666533
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.09 E-value=1e-08 Score=127.41 Aligned_cols=137 Identities=13% Similarity=0.093 Sum_probs=81.5
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHH
Q psy3224 930 NPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKG 1008 (1278)
Q Consensus 930 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la 1008 (1278)
.|.+..++..++.+....|.+++|..+++.+++..|+ ..++..++.++.+.+++++|+..+++++...|+++..++.+|
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 4555555555555555555555666666555555554 355555555555666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 1009 QIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNP 1066 (1278)
Q Consensus 1009 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p 1066 (1278)
.++.+.|++++|..+|++++..+|++..+|..+|.++...|+.++|...|++++....
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 6666666666666666666665555566666666666666666666666666655543
No 123
>KOG3617|consensus
Probab=99.09 E-value=2.5e-06 Score=100.57 Aligned_cols=383 Identities=17% Similarity=0.166 Sum_probs=214.0
Q ss_pred ccccchHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHh---cCCC--HHHHHHHHh
Q psy3224 491 GGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIM--------KGCEE---NQTS--EDLWLEAAR 557 (1278)
Q Consensus 491 ~~~~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~--------~al~~---~P~s--~~lwl~~a~ 557 (1278)
+.-.|+.+.|.+-++-. ++..+|-.+|+...+.++.+-|+..+- +|++. +|+. .++-..++.
T Consensus 738 yvtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAie 812 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIE 812 (1416)
T ss_pred EEEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHH
Confidence 66779999998877542 345799999999988777777765542 23322 3322 244566777
Q ss_pred cCCchHHHHHHHHHHHhC-----CCCHHHHHHHHHchhhHHHHHHHHHHHHHhCCCCHHHHHHHHh-------cCCHHHH
Q psy3224 558 LQPVDTARAVIAQAVRHI-----PTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLWKAAVE-------LEDPEDA 625 (1278)
Q Consensus 558 L~~~~~A~~~l~kaL~~~-----P~s~~lw~~~~~le~~~~~A~~ll~rAle~~P~s~~Lw~al~~-------l~~~e~A 625 (1278)
|+-.++|+.+|++.-+++ -.+..-|-.++++.+..+ -+.|-..|.+ .++.+.|
T Consensus 813 LgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~D---------------RiHLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKD---------------RIHLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhcc---------------ceehhhhHHHHHHHHHhhccHHHH
Confidence 888888888888875544 122233444333332111 1111112221 2366667
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCc
Q psy3224 626 RILLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGV 705 (1278)
Q Consensus 626 ~~~l~kal~~~P~~~~~w~~la~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~ 705 (1278)
+++|+|+- .+.. ...--|.++..+++.|-+ . ..++..|..++...+..|..+.|..+|..+-.
T Consensus 878 leyyEK~~-----~haf-ev~rmL~e~p~~~e~Yv~---~-~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------- 940 (1416)
T KOG3617|consen 878 LEYYEKAG-----VHAF-EVFRMLKEYPKQIEQYVR---R-KRDESLYSWWGQYLESVGEMDAALSFYSSAKD------- 940 (1416)
T ss_pred HHHHHhcC-----ChHH-HHHHHHHhChHHHHHHHH---h-ccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------
Confidence 77766641 1111 000111233333333322 1 23668999999999999999999999987763
Q ss_pred cccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy3224 706 EINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLR 785 (1278)
Q Consensus 706 ~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 785 (1278)
|+...+...-.|+.+.|-.|-+..- +..+.+.+|+.|...|++.+|+.+|.+|- ++.+
T Consensus 941 ------~fs~VrI~C~qGk~~kAa~iA~esg--------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq--------afsn 998 (1416)
T KOG3617|consen 941 ------YFSMVRIKCIQGKTDKAARIAEESG--------DKAACYHLARMYENDGDVVKAVKFFTRAQ--------AFSN 998 (1416)
T ss_pred ------hhhheeeEeeccCchHHHHHHHhcc--------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH--------HHHH
Confidence 5555566666788888877665532 24578889999999999999999999873 3444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy3224 786 AAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLM 865 (1278)
Q Consensus 786 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 865 (1278)
.+.++..++-.++ +..-++-..|.+ ......+++..-|....|..+|.+|=-. .
T Consensus 999 AIRlcKEnd~~d~---L~nlal~s~~~d--------------~v~aArYyEe~g~~~~~AVmLYHkAGm~---------~ 1052 (1416)
T KOG3617|consen 999 AIRLCKENDMKDR---LANLALMSGGSD--------------LVSAARYYEELGGYAHKAVMLYHKAGMI---------G 1052 (1416)
T ss_pred HHHHHHhcCHHHH---HHHHHhhcCchh--------------HHHHHHHHHHcchhhhHHHHHHHhhcch---------H
Confidence 4555555444433 222222222222 1222223333333555565555543110 0
Q ss_pred HHH-HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhh---------------
Q psy3224 866 GAK-SKWLAGDVPAARGILSLAFQANPN-SEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQ--------------- 928 (1278)
Q Consensus 866 la~-~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~--------------- 928 (1278)
.|. +.+...+ -.|+++..+= ++|+ ++.+....+.+.....+|++|..++-.+......++
T Consensus 1053 kALelAF~tqQ-f~aL~lIa~D--Ld~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE 1129 (1416)
T KOG3617|consen 1053 KALELAFRTQQ-FSALDLIAKD--LDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAE 1129 (1416)
T ss_pred HHHHHHHhhcc-cHHHHHHHHh--cCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 000 0011111 1233332222 2333 466666677777777777777666555443322110
Q ss_pred -------cCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 929 -------ANPN---SEEIWLAAVKLESENNEYERARRLLAKAR 961 (1278)
Q Consensus 929 -------~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~al 961 (1278)
..|+ ...++..++.++.++|.|..|-+-|.++-
T Consensus 1130 ~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1130 LMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred hcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 1111 23456678888899999888888777653
No 124
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.08 E-value=9.9e-09 Score=127.55 Aligned_cols=146 Identities=10% Similarity=0.059 Sum_probs=137.3
Q ss_pred HHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy3224 961 RASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039 (1278)
Q Consensus 961 l~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 1039 (1278)
....|. +.++..+|.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|...+++++...|++...+.
T Consensus 79 ~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~ 158 (694)
T PRK15179 79 VRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREIL 158 (694)
T ss_pred HHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHH
Confidence 334554 7999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Q psy3224 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILW 1106 (1278)
Q Consensus 1040 ~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 1106 (1278)
.+|.++...|++++|...|++++..+|+++.+|..++.++...|+.++|...|+++++....-...+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 9999999999999999999999999999999999999999999999999999999999876544443
No 125
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.06 E-value=3.4e-09 Score=105.85 Aligned_cols=119 Identities=14% Similarity=0.084 Sum_probs=89.6
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 988 QLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPN 1067 (1278)
Q Consensus 988 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~ 1067 (1278)
..|++++...|++..+.+.+|.++...|++++|...|++++..+|.++.+|..++.++...|++++|..+|++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 35667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Q psy3224 1068 CAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILW 1106 (1278)
Q Consensus 1068 ~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 1106 (1278)
++..+..++.++...|++++|...++++++..|++...+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 777777777777777777777777777777777765533
No 126
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=3.1e-09 Score=119.20 Aligned_cols=260 Identities=16% Similarity=0.104 Sum_probs=191.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHH
Q psy3224 836 EKNHGTRESLETLLQKAVAHCP-KSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERAR 914 (1278)
Q Consensus 836 ~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~ 914 (1278)
..-.|+|..++..++ .....| ..........+.++.+|++...+.-+... ..| ...+...++.++....+-+.++
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~--~~~-~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKS--SSP-ELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TT--SSC-CCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccC--CCh-hHHHHHHHHHHHhCccchHHHH
Confidence 345688888887666 222333 23456778888999999988766544332 123 3556666777666555666666
Q ss_pred HHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 915 RLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAI 994 (1278)
Q Consensus 915 ~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al 994 (1278)
..++..+. -...+.++.+....+.++...|++++|+.++.+. .+.+.......++...++++.|.+.++.+.
T Consensus 87 ~~l~~~~~----~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 87 EELKELLA----DQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHCCC----TS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHH----hccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66555320 0112244555667778888899999999988764 456777778889999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy3224 995 KVFPDFAKLWMMKGQIEEQKN--LLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072 (1278)
Q Consensus 995 ~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~ 1072 (1278)
+.+.++.-+.+.-+++....| ++.+|..+|+.....++.++.++..++.++..+|++++|.+.+++++..+|++++++
T Consensus 159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 998888777777777766655 699999999999888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHHCCCcHHHHH
Q psy3224 1073 LAAIRVEIRAGLK-DIANTMMAKALQECPNAGILWA 1107 (1278)
Q Consensus 1073 ~~l~~~~~~~g~~-~~A~~~~~kal~~~P~~~~~~~ 1107 (1278)
.+++.+....|+. +.+.+++.++...+|+++.+-.
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999988 6788899999999999886543
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.04 E-value=1.4e-08 Score=106.54 Aligned_cols=174 Identities=14% Similarity=0.117 Sum_probs=100.9
Q ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 953 ARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKC 1031 (1278)
Q Consensus 953 A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 1031 (1278)
+...+-+....+|. ..+ ..++..+...|+-+.+..+..++...+|.+..++..+|....+.|++..|+..+.++....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~ 130 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA 130 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 33333333444443 233 5555555555555555556666555556555555556666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHh
Q psy3224 1032 PHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIF 1111 (1278)
Q Consensus 1032 p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~ 1111 (1278)
|++..+|..+|.+|.+.|+++.|+..|.+++++.|+++.+..+++..+.-.|+++.|..++..+...-+.+..+..+++.
T Consensus 131 p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl 210 (257)
T COG5010 131 PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLAL 210 (257)
T ss_pred CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666665555555555555655
Q ss_pred ccCCCCChhHHHHHHH
Q psy3224 1112 LEPRPQRKTKSVDALK 1127 (1278)
Q Consensus 1112 ~~~~~~~~~~A~~~l~ 1127 (1278)
.....|++..|.++..
T Consensus 211 ~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 211 VVGLQGDFREAEDIAV 226 (257)
T ss_pred HHhhcCChHHHHhhcc
Confidence 5555666655555443
No 128
>KOG4340|consensus
Probab=99.00 E-value=8.2e-07 Score=93.51 Aligned_cols=303 Identities=15% Similarity=0.075 Sum_probs=201.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH----HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy3224 615 AAVELEDPEDARILLSRAVECCPTSVELWLA----LARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVD 690 (1278)
Q Consensus 615 al~~l~~~e~A~~~l~kal~~~P~~~~~w~~----la~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 690 (1278)
.+++-.+|++|++++.--.+..|.+...... |-+.++|..|..+|++.-...|......+..|+...+.+.+..|.
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 4566668999999999999999977665543 336789999999999999999988888888999999999999999
Q ss_pred HHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 691 KIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYA 770 (1278)
Q Consensus 691 ~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 770 (1278)
.+...+... . .......--.+-.....+++..++.++++.-.. ......+..|-+.++.|+++.|.+-|+
T Consensus 99 rV~~~~~D~----~-~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-----n~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 99 RVAFLLLDN----P-ALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-----NEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHhcCC----H-HHHHHHHHHHHHHhcccccCcchHHHHHhccCC-----CccchhccchheeeccccHHHHHHHHH
Confidence 888766532 0 112223333445556677888888777765321 224577788888899999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHH
Q psy3224 771 QALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAH----CPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLE 846 (1278)
Q Consensus 771 ~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~ 846 (1278)
.+++...-++-+-+.++.+..+.+++..|..+....++. .|.-..-..+... + -+..|+ -+
T Consensus 169 aAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi----D--------vrsvgN---t~ 233 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI----D--------VRSVGN---TL 233 (459)
T ss_pred HHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC----c--------hhcccc---hH
Confidence 999998888888899999999999999998877665544 4432210000000 0 000011 11
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy3224 847 TLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPN-----SEEIWLAAVKLESENNEYERARRLLAKAR 921 (1278)
Q Consensus 847 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-----~~~~~~~la~l~~~~g~~~~A~~~l~~al 921 (1278)
.+-+.++ .+++...+-++.+.++++.|++.+... .|. ++..+..++..- ..+++.....-+.-.+
T Consensus 234 ~lh~Sal------~eAfNLKaAIeyq~~n~eAA~eaLtDm---PPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL 303 (459)
T KOG4340|consen 234 VLHQSAL------VEAFNLKAAIEYQLRNYEAAQEALTDM---PPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLL 303 (459)
T ss_pred HHHHHHH------HHHhhhhhhhhhhcccHHHHHHHhhcC---CCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHH
Confidence 2222222 234555666778888888887766543 332 233334443322 2344555555555544
Q ss_pred HhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 922 AQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLA 958 (1278)
Q Consensus 922 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 958 (1278)
..+|--.+.+-++..+|+++.-++-|..++.
T Consensus 304 ------~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 304 ------QQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred ------hcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 5677667777777777777777777666553
No 129
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.98 E-value=1.1e-08 Score=102.27 Aligned_cols=117 Identities=13% Similarity=0.014 Sum_probs=96.8
Q ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 955 RLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH 1033 (1278)
Q Consensus 955 ~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 1033 (1278)
..|.+++...|+ ....+.++..+...|++++|...+++++..+|.++.+|..+|.++...|++++|..+|++++..+|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 356677777775 4667777888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 1034 SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 1034 ~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
++..+..+|.++...|++++|+.+|+++++.+|++...
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 88888888888888888888888888888888877764
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.97 E-value=7.7e-08 Score=108.97 Aligned_cols=161 Identities=14% Similarity=0.057 Sum_probs=135.5
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 998 PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIR 1077 (1278)
Q Consensus 998 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~ 1077 (1278)
|....+++..+..+...|+++.|+..+...+...|+|+.++...+.++...++..+|.+.+++++.+.|+.+.++..++.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67778888888888889999999999999999999999888889999999999999999999999999998888999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCc
Q psy3224 1078 VEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGS 1157 (1278)
Q Consensus 1078 ~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~ 1157 (1278)
.+.+.|++.+|+.++...+..+|+++..|..++..+...|+..+
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~------------------------------------ 426 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAE------------------------------------ 426 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHH------------------------------------
Confidence 99999999999999999999999999999888887766666554
Q ss_pred cccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHH
Q psy3224 1158 RRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWA 1216 (1278)
Q Consensus 1158 ~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~ 1216 (1278)
.....|..|+..|++++|+..+.++.+...-+...|.
T Consensus 427 ----------------------a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~a 463 (484)
T COG4783 427 ----------------------ALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWA 463 (484)
T ss_pred ----------------------HHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHH
Confidence 4455577777899999999999999887644433343
No 131
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=1.2e-08 Score=114.53 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCH-HHHHHHHHHHHHhCCCCcchhhh
Q psy3224 1178 PHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTE-ETQAEVKKRCLAAEPKHGENWCR 1251 (1278)
Q Consensus 1178 ~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~-~~A~~~l~ka~~~~P~~~~~w~~ 1251 (1278)
+.+++.+|.++...|++++|...++.++..+|++++++.+++.+....|+. +.+.+++.++....|+++-+-..
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~ 275 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL 275 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence 447888999999999999999999999999999999999999999999998 66788999999999998855443
No 132
>KOG3616|consensus
Probab=98.91 E-value=0.00028 Score=82.55 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=40.7
Q ss_pred ccccchHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy3224 491 GGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMK 540 (1278)
Q Consensus 491 ~~~~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~ 540 (1278)
....|+|..|...++ .++..|+-...|+.++.+.+..|+.--|...|..
T Consensus 454 aid~~df~ra~afle-s~~~~~da~amw~~laelale~~nl~iaercfaa 502 (1636)
T KOG3616|consen 454 AIDDGDFDRATAFLE-SLEMGPDAEAMWIRLAELALEAGNLFIAERCFAA 502 (1636)
T ss_pred ccccCchHHHHHHHH-hhccCccHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456799999988776 4678999999999999999999988877776654
No 133
>KOG0553|consensus
Probab=98.89 E-value=1.7e-08 Score=107.70 Aligned_cols=115 Identities=13% Similarity=0.019 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy3224 972 QSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKML 1051 (1278)
Q Consensus 972 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~ 1051 (1278)
.-|.-+...++|.+|+..|.+||+++|.++.+|.+.+.+|.++|.++.|++..+.++.++|++..+|..||.+|..+|++
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 34556667888999999999999999999999999999999999999999999999999999899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy3224 1052 IKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKD 1086 (1278)
Q Consensus 1052 ~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~ 1086 (1278)
.+|+..|++++.++|++...+..+-.+....+...
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999998888777777666655444
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.89 E-value=1.6e-07 Score=106.55 Aligned_cols=151 Identities=19% Similarity=0.097 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy3224 826 KSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLES 905 (1278)
Q Consensus 826 ~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~ 905 (1278)
...|+..+......|+++.|+..+..++...|+|+.++...+.++...|+..+|.+.+++++...|+...+++.++..+.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all 385 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL 385 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 34577777777888999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred hcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHH
Q psy3224 906 ENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLER 985 (1278)
Q Consensus 906 ~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~ 985 (1278)
+.|++.+|+.++...+ ..+|+++..|..+++.|..+|+..+|...+ +..+...|++++
T Consensus 386 ~~g~~~eai~~L~~~~------~~~p~dp~~w~~LAqay~~~g~~~~a~~A~----------------AE~~~~~G~~~~ 443 (484)
T COG4783 386 KGGKPQEAIRILNRYL------FNDPEDPNGWDLLAQAYAELGNRAEALLAR----------------AEGYALAGRLEQ 443 (484)
T ss_pred hcCChHHHHHHHHHHh------hcCCCCchHHHHHHHHHHHhCchHHHHHHH----------------HHHHHhCCCHHH
Confidence 9999999999999887 889999999999999999998887776554 445566788888
Q ss_pred HHHHHHHHHHhCC
Q psy3224 986 ALQLLDEAIKVFP 998 (1278)
Q Consensus 986 A~~~l~~al~~~p 998 (1278)
|+..+.++.+...
T Consensus 444 A~~~l~~A~~~~~ 456 (484)
T COG4783 444 AIIFLMRASQQVK 456 (484)
T ss_pred HHHHHHHHHHhcc
Confidence 8888888877664
No 135
>KOG1130|consensus
Probab=98.87 E-value=5.2e-08 Score=106.42 Aligned_cols=294 Identities=11% Similarity=-0.004 Sum_probs=156.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHH
Q psy3224 868 KSKWLAGDVPAARGILSLAFQANPNS----EEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKL 943 (1278)
Q Consensus 868 ~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~ 943 (1278)
.-+++.|+....+..|+.+++...++ ..+|..++..|..+++|.+|+++-..=+.....+...-.....--+++..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 34445556666666666666555443 22344555555555555555554332221111112222223333345666
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHh
Q psy3224 944 ESENNEYERARRLLAKARASAP-------TPRVMIQSAKLEWCLDN--------------------LERALQLLDEAIKV 996 (1278)
Q Consensus 944 ~~~~g~~~~A~~~l~~al~~~p-------~~~~~~~la~~~~~~g~--------------------~~~A~~~l~~al~~ 996 (1278)
+.-.|.|++|+.+..+-+.... ...++++++.+|...|+ ++.|.++|..-+++
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777777666554421 24677777777765543 23334444433333
Q ss_pred CCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 997 FPDF------AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS------VPLWIMLANLEERRKMLIKARSVLEKGRLR 1064 (1278)
Q Consensus 997 ~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~l~~~~g~~~~A~~~l~kal~~ 1064 (1278)
.... ..++-.+|..|+-.|+|+.|+..-+.-+.+.... -.++.+++.++.-.|+++.|+++|++.+.+
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 2211 3445556666677777777777665555443221 235566777777777777777777776544
Q ss_pred CC----C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhh
Q psy3224 1065 NP----N--CAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLA 1138 (1278)
Q Consensus 1065 ~p----~--~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~ 1138 (1278)
.- . .....+.++..|.-...+++|+.++.+-+.+... +..
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe-------L~D--------------------------- 310 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE-------LED--------------------------- 310 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---------------------------
Confidence 21 1 1123344555555555556666555554432210 000
Q ss_pred hhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----Ch--
Q psy3224 1139 VSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPD----LG-- 1212 (1278)
Q Consensus 1139 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~----~~-- 1212 (1278)
.-....+++.||..|...|..++|+.+.++.+.+.-+ .+
T Consensus 311 -----------------------------------riGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgel 355 (639)
T KOG1130|consen 311 -----------------------------------RIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGEL 355 (639)
T ss_pred -----------------------------------hhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhh
Confidence 0001116778888888888888888888887764222 22
Q ss_pred hHHHHHHHHHHHhCCHHH
Q psy3224 1213 DAWAYFYKFEIINGTEET 1230 (1278)
Q Consensus 1213 d~~~~l~~~~~~~G~~~~ 1230 (1278)
.+..++...-...|..+.
T Consensus 356 Tar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 356 TARDNLSDLILELGQEDS 373 (639)
T ss_pred hhhhhhHHHHHHhCCCcc
Confidence 245566666666666544
No 136
>KOG2300|consensus
Probab=98.85 E-value=0.0004 Score=78.55 Aligned_cols=441 Identities=14% Similarity=0.110 Sum_probs=251.6
Q ss_pred HHHHHHHcC--ChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHH-cCCHHHHHHHHHHHHHhC---CCCH----HHHH
Q psy3224 715 EAIEAEKAG--SVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCAN-QGAYECARAIYAQALATF---PSKK----SIWL 784 (1278)
Q Consensus 715 ~A~~~~~~g--~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~---P~~~----~~~~ 784 (1278)
.|+.+...| ++..|..+++.+....+...-.....+.+|..++. ..+++.|...++++.... |+.. .+..
T Consensus 13 lAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 13 LAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred HHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Confidence 344444444 34444444444444433333334566667766554 477888888888886553 4432 3455
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH
Q psy3224 785 RAAYFEKNHG-TRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLW 863 (1278)
Q Consensus 785 ~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~ 863 (1278)
.++.++.... .+..+..++.++++.....+ .|. -.+.+.++.+.....++..|++++.-.......-...|
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p-~ws-------ckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~y 164 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVP-YWS-------CKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPY 164 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCc-hhh-------HHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHH
Confidence 6677777766 77888888888888876655 232 12445667777777888888877543332211111112
Q ss_pred HH------HHHHHHHc---CCHHHHHHHHHHHHHhCCCCH------HHHHH-H-HHHHHhcCcHHHHHHHHHHHHHhhhh
Q psy3224 864 LM------GAKSKWLA---GDVPAARGILSLAFQANPNSE------EIWLA-A-VKLESENNEYERARRLLAKARAQAGA 926 (1278)
Q Consensus 864 ~~------la~~~~~~---g~~~~A~~~l~~al~~~p~~~------~~~~~-l-a~l~~~~g~~~~A~~~l~~al~~~~~ 926 (1278)
+. .+.++... .+...+.....+..+....++ .+++. + ...|...|+...+...+++.......
T Consensus 165 lr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqt 244 (629)
T KOG2300|consen 165 LRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQT 244 (629)
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhc
Confidence 21 12222222 344444555555544332221 12221 1 22244567777776666655443321
Q ss_pred hh------------cCCCcHHHHHHH----HHHH-------HHcCCHHHHHHHHHHHHHhCC---C----HH--------
Q psy3224 927 FQ------------ANPNSEEIWLAA----VKLE-------SENNEYERARRLLAKARASAP---T----PR-------- 968 (1278)
Q Consensus 927 l~------------~~p~~~~~~~~l----a~~~-------~~~g~~~~A~~~l~~al~~~p---~----~~-------- 968 (1278)
+. .++-..-.|.-. +.+| ...|-+++|.++-++++.... . ..
T Consensus 245 ist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~ 324 (629)
T KOG2300|consen 245 ISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMI 324 (629)
T ss_pred cCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 11 111112223211 1111 245667788877777776521 1 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCC-------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH--
Q psy3224 969 VMIQSAKLEWCLDNLERALQLLDEAIK---VFPD-------FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH-SV-- 1035 (1278)
Q Consensus 969 ~~~~la~~~~~~g~~~~A~~~l~~al~---~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~-- 1035 (1278)
.+-..+.+..-.|++.+|++....+.. ..|. .+.+.+.+|......+.++.|...|..|.+.... +.
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a 404 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQA 404 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence 222233344567899998888776665 3453 3566777777778888999999999999887653 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Q psy3224 1036 PLWIMLANLEERRKMLIKARSVLEKGRLRNPNCA----------ELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGIL 1105 (1278)
Q Consensus 1036 ~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~----------~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~ 1105 (1278)
....++|..|.+.++.+.-.+.++.. .|.+. .+++.+|.+.+..+++.+|...+.+.++.. +....
T Consensus 405 ~~nlnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~ 480 (629)
T KOG2300|consen 405 FCNLNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDL 480 (629)
T ss_pred HHHHhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhH
Confidence 23336688888877765555555433 44321 346677778888899999999988888765 21111
Q ss_pred HHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHH
Q psy3224 1106 WAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVS 1185 (1278)
Q Consensus 1106 ~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg 1185 (1278)
..+.. ..+..||
T Consensus 481 -~rL~a-------------------------------------------------------------------~~LvLLs 492 (629)
T KOG2300|consen 481 -NRLTA-------------------------------------------------------------------CSLVLLS 492 (629)
T ss_pred -HHHHH-------------------------------------------------------------------HHHHHHH
Confidence 11110 1567789
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChh----HHH--HHHHHHHHhCC--HHHHHHHH
Q psy3224 1186 KLFWCENKNQKCREWFNRTVKIDPDLGD----AWA--YFYKFEIINGT--EETQAEVK 1235 (1278)
Q Consensus 1186 ~~~~~~g~~~~A~~~~~kal~~~P~~~d----~~~--~l~~~~~~~G~--~~~A~~~l 1235 (1278)
.++...|+..++.+...-++.+....+| .|. -+-.++...|+ .+...+.+
T Consensus 493 ~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~ 550 (629)
T KOG2300|consen 493 HVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAF 550 (629)
T ss_pred HHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 9999999999999999988887655555 222 23455667777 44444443
No 137
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.80 E-value=9.5e-08 Score=94.14 Aligned_cols=102 Identities=11% Similarity=-0.011 Sum_probs=69.9
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 998 PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIR 1077 (1278)
Q Consensus 998 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~ 1077 (1278)
++.-+..+.+|..+...|++++|..+|+-+...+|.+...|+.+|-++...|++.+|+..|.+++.++|+++..+...+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 44455666666666666777777777766666677666667777766666777777777777777777766666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHHC
Q psy3224 1078 VEIRAGLKDIANTMMAKALQEC 1099 (1278)
Q Consensus 1078 ~~~~~g~~~~A~~~~~kal~~~ 1099 (1278)
++...|+.+.|+..|+.++..+
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHh
Confidence 6666777777777776666665
No 138
>KOG2053|consensus
Probab=98.78 E-value=0.00072 Score=82.30 Aligned_cols=417 Identities=14% Similarity=0.034 Sum_probs=224.9
Q ss_pred HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhH
Q psy3224 648 RLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHT 727 (1278)
Q Consensus 648 ~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~ 727 (1278)
..+++.+|.+...+.++..|+...+...-|....+.|..++|..+++..-.. +
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~-------------------------- 73 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGL-K-------------------------- 73 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccC-C--------------------------
Confidence 3467778888888888888887777777777888888888877555533221 1
Q ss_pred HHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 728 CQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAV 807 (1278)
Q Consensus 728 A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al 807 (1278)
++ +....-.+-.+|...+.+++|..+|++++..+|+ .+....+-.+|.+.+.+.+-.+.--+..
T Consensus 74 ------------~~---D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~Ly 137 (932)
T KOG2053|consen 74 ------------GT---DDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLY 137 (932)
T ss_pred ------------CC---chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1234445566778888889999999999999998 8888888888888887777665555566
Q ss_pred HhCCchHHHHHhhcccchHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHhC-CC-cHHHHHHHHHHHHHcCCH
Q psy3224 808 AHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGT---------RESLETLLQKAVAHC-PK-SEVLWLMGAKSKWLAGDV 876 (1278)
Q Consensus 808 ~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~---------~~~A~~~~~~al~~~-P~-~~~~~~~la~~~~~~g~~ 876 (1278)
+..|.+.-. .|.....+...... ..-|...+++.++.. +- +..=...+-.++..+|++
T Consensus 138 K~~pk~~yy-----------fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~ 206 (932)
T KOG2053|consen 138 KNFPKRAYY-----------FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKY 206 (932)
T ss_pred HhCCcccch-----------HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccH
Confidence 677776532 23222211111111 122555666666654 21 112233444566678889
Q ss_pred HHHHHHHHH-HHH-hCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHH-HHHHHHH-------
Q psy3224 877 PAARGILSL-AFQ-ANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLA-AVKLESE------- 946 (1278)
Q Consensus 877 ~~A~~~l~~-al~-~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~-la~~~~~------- 946 (1278)
++|.+++.. ..+ ..+.+...-.....++...+++.+-.++..+++ ...+++...+.. .-.+...
T Consensus 207 ~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll------~k~~Ddy~~~~~sv~klLe~~~~~~a~ 280 (932)
T KOG2053|consen 207 QEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL------EKGNDDYKIYTDSVFKLLELLNKEPAE 280 (932)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH------HhCCcchHHHHHHHHHHHHhcccccch
Confidence 999998843 333 334455555677788888899998888888887 666766222221 1111111
Q ss_pred -----cCCHHHHHHHHHHHHHh-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH-HHHHHHHHHHHHcCCHH
Q psy3224 947 -----NNEYERARRLLAKARAS-APTP-RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFA-KLWMMKGQIEEQKNLLD 1018 (1278)
Q Consensus 947 -----~g~~~~A~~~l~~al~~-~p~~-~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-~~~~~la~~~~~~g~~~ 1018 (1278)
.+..+...+...+.+.. ..+| -+++.+-.-+...|+.+++...|-+-+-.-|-.. ++...+ ..=..+
T Consensus 281 ~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl-----~~l~~~ 355 (932)
T KOG2053|consen 281 AAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYL-----GHLNID 355 (932)
T ss_pred hhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhh-----ccCCHH
Confidence 12223333333333322 1122 3333333333456777777666655444444221 111111 111222
Q ss_pred HHHHHHHHHHHhCCCCH----HHHHHH--HHHHHHcCCH-----HHHHHHHHHHH-------Hh----CCC---CHHHHH
Q psy3224 1019 KAHDTFSQAIKKCPHSV----PLWIML--ANLEERRKML-----IKARSVLEKGR-------LR----NPN---CAELWL 1073 (1278)
Q Consensus 1019 ~A~~~~~~al~~~p~~~----~~~~~l--a~l~~~~g~~-----~~A~~~l~kal-------~~----~p~---~~~~~~ 1073 (1278)
+-..+....+..++... .+|..+ -.+....|.+ +.-+.++.++. .. .|. .++.+.
T Consensus 356 q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~l 435 (932)
T KOG2053|consen 356 QLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELL 435 (932)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHH
Confidence 22333333333333221 111111 1111222321 11222222221 11 121 122222
Q ss_pred -----HHHHHHHHcCC---HHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHh
Q psy3224 1074 -----AAIRVEIRAGL---KDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKC 1129 (1278)
Q Consensus 1074 -----~l~~~~~~~g~---~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~ 1129 (1278)
.+..++.+.++ .-+|+-+++..+...|++...-..++.+|.-.|-+..|.+.|+.+
T Consensus 436 lLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tL 499 (932)
T KOG2053|consen 436 LLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTL 499 (932)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhc
Confidence 22234444443 456788888888888888777777777777778888887777765
No 139
>KOG1130|consensus
Probab=98.77 E-value=1.7e-07 Score=102.54 Aligned_cols=295 Identities=10% Similarity=-0.030 Sum_probs=165.3
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCcc-chHhhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC----CCHHHHHHHHHHH
Q psy3224 718 EAEKAGSVHTCQALIRAIIGYGVEQE-DRKHTWMEDAESCANQGAYECARAIYAQALAT--FP----SKKSIWLRAAYFE 790 (1278)
Q Consensus 718 ~~~~~g~~~~A~~i~~~~l~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P----~~~~~~~~la~~~ 790 (1278)
.+.+.|+.......|+.++..+.++. .-..+|..+++.|+-.++|++|.++-..-+.. .- .....--.++..+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 34444555555555555555443331 12456777888888888888887765433222 11 1112334556666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q psy3224 791 KNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSK 870 (1278)
Q Consensus 791 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 870 (1278)
.-.|.+++|+.+..+-+.. |.++=.+.++ ..+++.+|.+|
T Consensus 106 Kv~G~fdeA~~cc~rhLd~-----------------------------------areLgDrv~e-----~RAlYNlgnvY 145 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDF-----------------------------------ARELGDRVLE-----SRALYNLGNVY 145 (639)
T ss_pred hhhcccchHHHHHHHHhHH-----------------------------------HHHHhHHHhh-----hHHHhhhhhhh
Confidence 6677777776666654322 2222222222 24556666666
Q ss_pred HHcCC-------------HHHHHHHHHHHHHhCCCC-------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Q psy3224 871 WLAGD-------------VPAARGILSLAFQANPNS-------------EEIWLAAVKLESENNEYERARRLLAKARAQA 924 (1278)
Q Consensus 871 ~~~g~-------------~~~A~~~l~~al~~~p~~-------------~~~~~~la~l~~~~g~~~~A~~~l~~al~~~ 924 (1278)
...|+ .+++...++.+++.+-.+ ..++-.++..|.-+|+++.|+..-+.-+...
T Consensus 146 hakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia 225 (639)
T KOG1130|consen 146 HAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIA 225 (639)
T ss_pred hhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHH
Confidence 55442 123333333333332222 2234455555666777887776665555443
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 925 GAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAP-------TPRVMIQSAKLEWCLDNLERALQLLDEAIKVF 997 (1278)
Q Consensus 925 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p-------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 997 (1278)
++.........++.+++.++.-.|+++.|++.|.+.+.+.- .....+.++..|.-..++++|+.++++-+.+.
T Consensus 226 ~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA 305 (639)
T KOG1130|consen 226 QEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA 305 (639)
T ss_pred HHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322233345566777788888888888888877665421 14667777888888888888888887766653
Q ss_pred C------ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCC--HHHHHHHHHHHHHcCCHH
Q psy3224 998 P------DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKC----PHS--VPLWIMLANLEERRKMLI 1052 (1278)
Q Consensus 998 p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~--~~~~~~la~l~~~~g~~~ 1052 (1278)
. ....+++.+|..+...|..++|..+.+..++.. ..+ ..+..++..+-...|..+
T Consensus 306 qeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~d 372 (639)
T KOG1130|consen 306 QELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQED 372 (639)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCc
Confidence 3 224667777777778888888777766666432 111 223444555555555433
No 140
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.75 E-value=3.8e-05 Score=84.31 Aligned_cols=296 Identities=19% Similarity=0.158 Sum_probs=198.5
Q ss_pred HcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCC
Q psy3224 682 AHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGA 761 (1278)
Q Consensus 682 ~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~ 761 (1278)
-.|+-..|.+.-.++-+.+..+ ......+..++...-.|+++.|++-|+.++.. |+ .+.-.+--+--.....|.
T Consensus 96 gAGda~lARkmt~~~~~llssD---qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PE--tRllGLRgLyleAqr~Ga 169 (531)
T COG3898 96 GAGDASLARKMTARASKLLSSD---QEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PE--TRLLGLRGLYLEAQRLGA 169 (531)
T ss_pred ccCchHHHHHHHHHHHhhhhcc---chHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hH--HHHHhHHHHHHHHHhccc
Confidence 3444444544444444332221 12233444455555555555555555555442 10 000011111122345699
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCC
Q psy3224 762 YECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGT 841 (1278)
Q Consensus 762 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~ 841 (1278)
.+.|+.+-+.+-..-|.-.-+|.......+..|+++.|+++++......--....- .....+++..--......+
T Consensus 170 reaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~a-----eR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 170 REAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVA-----ERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhH-----HHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999976554321111000 0001122222223344566
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy3224 842 RESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKAR 921 (1278)
Q Consensus 842 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al 921 (1278)
...|+..-.+++++.|+....-+..+..+++.|+.-++-.+++.+.+..|+ +.++..+.. .+.|+... .-++++.
T Consensus 245 p~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~--ar~gdta~--dRlkRa~ 319 (531)
T COG3898 245 PASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVR--ARSGDTAL--DRLKRAK 319 (531)
T ss_pred hHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHH--hcCCCcHH--HHHHHHH
Confidence 778999999999999999999999999999999999999999999999994 777766553 34455433 3333332
Q ss_pred HhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q psy3224 922 AQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCL-DNLERALQLLDEAIKV 996 (1278)
Q Consensus 922 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~-g~~~~A~~~l~~al~~ 996 (1278)
.+ ....|++.+..+..++..+..|++..|+.--+.+....|...++..++.+.... |+-.+++.++.++++.
T Consensus 320 ~L---~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 320 KL---ESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HH---HhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 21 156788899999889888899999999999998888888888888888887654 8888888888888763
No 141
>KOG0553|consensus
Probab=98.75 E-value=6.5e-08 Score=103.38 Aligned_cols=110 Identities=15% Similarity=0.043 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy3224 1003 LWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRA 1082 (1278)
Q Consensus 1003 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~ 1082 (1278)
-+-.-|.-+.+.++|.+|+..|.+||+++|.++..|...+.+|.++|.++.|++..+.++.++|....+|..++.++..+
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34445666788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Q psy3224 1083 GLKDIANTMMAKALQECPNAGILWAEAIFL 1112 (1278)
Q Consensus 1083 g~~~~A~~~~~kal~~~P~~~~~~~~~~~~ 1112 (1278)
|++++|++.|+++|.++|++...+..+-..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 999999999999999999999877755443
No 142
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.75 E-value=1.6e-07 Score=109.44 Aligned_cols=113 Identities=19% Similarity=0.192 Sum_probs=96.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy3224 970 MIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRK 1049 (1278)
Q Consensus 970 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g 1049 (1278)
+...|..++..|++++|+.+|.+++..+|+++.+|+.+|.++...|++++|+..+++++.++|.++.+|+.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34456677788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy3224 1050 MLIKARSVLEKGRLRNPNCAELWLAAIRVEIRA 1082 (1278)
Q Consensus 1050 ~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~ 1082 (1278)
++++|+..|++++.++|+++.+...+..+....
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999888877766665444
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.74 E-value=2.3e-07 Score=91.47 Aligned_cols=98 Identities=10% Similarity=-0.068 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~ 1047 (1278)
...+.++..++..|++++|..+|+-+...+|.+...|+.+|.++...|++.+|+..|.+++.++|+++..+..+|.++..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 45555666666666666666666666666776677777777777777777777777777777777777677777777777
Q ss_pred cCCHHHHHHHHHHHHHhC
Q psy3224 1048 RKMLIKARSVLEKGRLRN 1065 (1278)
Q Consensus 1048 ~g~~~~A~~~l~kal~~~ 1065 (1278)
.|+.+.|++.|+.++...
T Consensus 116 lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 777777777776666655
No 144
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.73 E-value=1.9e-06 Score=94.41 Aligned_cols=180 Identities=13% Similarity=0.027 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q psy3224 1001 AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLW---IMLANLEERRKMLIKARSVLEKGRLRNPNCAE---LWLA 1074 (1278)
Q Consensus 1001 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~---~~~~ 1074 (1278)
+..++..|..+...|++++|+..|++++...|.++.+. +.+|.++.+.+++++|+..|++.++.+|+++. +++.
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 44444555555555555555555555555555543332 45555555566666666666666665555442 2333
Q ss_pred HHHHHHHcC------------------CHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchh
Q psy3224 1075 AIRVEIRAG------------------LKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVL 1136 (1278)
Q Consensus 1075 l~~~~~~~g------------------~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~ 1136 (1278)
.|.+....+ ...+|+..|++.++..|++..+-. |...+..+.+
T Consensus 112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~--------------A~~rl~~l~~----- 172 (243)
T PRK10866 112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTD--------------ATKRLVFLKD----- 172 (243)
T ss_pred HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHH--------------HHHHHHHHHH-----
Confidence 333322221 134677889999999998764322 2222221100
Q ss_pred hhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---h
Q psy3224 1137 LAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLG---D 1213 (1278)
Q Consensus 1137 ~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~---d 1213 (1278)
.+. .--+.+|..|++.|.+..|+.-|+.+++..|+.+ +
T Consensus 173 ----~la-----------------------------------~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~e 213 (243)
T PRK10866 173 ----RLA-----------------------------------KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRD 213 (243)
T ss_pred ----HHH-----------------------------------HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHH
Confidence 000 0345789999999999999999999999988864 5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Q psy3224 1214 AWAYFYKFEIINGTEETQAEVKKRC 1238 (1278)
Q Consensus 1214 ~~~~l~~~~~~~G~~~~A~~~l~ka 1238 (1278)
++..+...+..+|..++|..+....
T Consensus 214 al~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 214 ALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHH
Confidence 8888899999999999998877654
No 145
>KOG2053|consensus
Probab=98.72 E-value=0.0017 Score=79.15 Aligned_cols=475 Identities=13% Similarity=0.052 Sum_probs=247.6
Q ss_pred HHHHHHHHHHHHhCCCCH--HHHH--HHHhcCCHHHHHHHHHHHHHhCCCCHHHH----HHHHHhcCHHHHHHHHHHHHH
Q psy3224 593 KAKRRVYRKALEHIPNSV--RLWK--AAVELEDPEDARILLSRAVECCPTSVELW----LALARLETYENARKVLNKARE 664 (1278)
Q Consensus 593 ~~A~~ll~rAle~~P~s~--~Lw~--al~~l~~~e~A~~~l~kal~~~P~~~~~w----~~la~l~~~~~A~~~l~~al~ 664 (1278)
..|.....+.+...|+.. .... .++++|.+++|..+++..-...+++.... ..|-+++.+++|..+|++++.
T Consensus 26 kkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 334444444444555443 2222 24566777777765555444444443322 234456777777777777777
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCC---------hhHHHHHHHHH
Q psy3224 665 NIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGS---------VHTCQALIRAI 735 (1278)
Q Consensus 665 ~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~---------~~~A~~i~~~~ 735 (1278)
.+|. .+..+.+-.+|.+.+.+.+-.++--++-+..|+. ..-.|......+..... ..-|...++..
T Consensus 106 ~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~----~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~ 180 (932)
T KOG2053|consen 106 KYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR----AYYFWSVISLILQSIFSENELLDPILLALAEKMVQKL 180 (932)
T ss_pred hCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc----cchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHH
Confidence 7775 6666666666666666654333333333333332 12234333222222221 12344445555
Q ss_pred HhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHH-HHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Q psy3224 736 IGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQ-ALAT-FPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKS 813 (1278)
Q Consensus 736 l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 813 (1278)
+.... ......-...+-.++..+|.+++|..++.. .... .+.+...-..-..++...+++.+..++..+++...+++
T Consensus 181 l~~~g-k~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 181 LEKKG-KIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hccCC-ccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 54431 111222233344566778899999999843 3333 34455555667888999999999999999999999887
Q ss_pred HHHHHhhcccchHHHHHHHHHHH---------HhcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 814 EVLWLMGAKSNKKSIWLRAAYFE---------KNHGTRESLETLLQKAVAHCPKS-EVLWLMGAKSKWLAGDVPAARGIL 883 (1278)
Q Consensus 814 ~~~~~~~~~~~~~~~~l~~a~l~---------~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~~~~A~~~l 883 (1278)
...+. +......... ...+..+...+...+.+...... .-+++.+-.-+...|+.+++...|
T Consensus 260 y~~~~--------~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~ee~~~~y 331 (932)
T KOG2053|consen 260 YKIYT--------DSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSEEMLSYY 331 (932)
T ss_pred hHHHH--------HHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChHHHHHHH
Confidence 22110 0011111100 01122333333334444332222 233444444444568888877777
Q ss_pred HHHHHhCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcH----HH--HHHHHHHHHHcCCH-----H
Q psy3224 884 SLAFQANPNSE-EIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSE----EI--WLAAVKLESENNEY-----E 951 (1278)
Q Consensus 884 ~~al~~~p~~~-~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~----~~--~~~la~~~~~~g~~-----~ 951 (1278)
-+-+..-|-.. ++...+. .=...+-..+..+.. ...+... .+ +.....+....|.+ +
T Consensus 332 ~~kfg~kpcc~~Dl~~yl~-----~l~~~q~~~l~~~l~------~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad 400 (932)
T KOG2053|consen 332 FKKFGDKPCCAIDLNHYLG-----HLNIDQLKSLMSKLV------LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPAD 400 (932)
T ss_pred HHHhCCCcHhHhhHHHhhc-----cCCHHHHHHHHHHhh------ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChH
Confidence 66554433211 1110000 001111111122111 1111111 01 11111122222321 1
Q ss_pred HHHHH-------HHHHHHh----CCC----HHHHH-----HHHHHHHHcCCH---HHHHHHHHHHHHhCCChHHHHHHHH
Q psy3224 952 RARRL-------LAKARAS----APT----PRVMI-----QSAKLEWCLDNL---ERALQLLDEAIKVFPDFAKLWMMKG 1008 (1278)
Q Consensus 952 ~A~~~-------l~~al~~----~p~----~~~~~-----~la~~~~~~g~~---~~A~~~l~~al~~~p~~~~~~~~la 1008 (1278)
.-..+ |++-+.. .|+ ...+. .+..++++.++. -+|+-+++..+...|.++.....+.
T Consensus 401 ~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLi 480 (932)
T KOG2053|consen 401 SILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHH
Confidence 22222 2222222 122 12222 233455666654 5789999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy3224 1009 QIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIA 1088 (1278)
Q Consensus 1009 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A 1088 (1278)
.+|...|-+..|.+.|...=-.+-..-.+=..+-..+...|++.-+...+...+....++..--..++...++.|.|.+-
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI 560 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKI 560 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhh
Confidence 99999999999999998653222222222233445556778999999999999988776665456777777788888876
Q ss_pred HHHH
Q psy3224 1089 NTMM 1092 (1278)
Q Consensus 1089 ~~~~ 1092 (1278)
.++.
T Consensus 561 ~em~ 564 (932)
T KOG2053|consen 561 PEML 564 (932)
T ss_pred HHHH
Confidence 6554
No 146
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.71 E-value=1.1e-06 Score=94.01 Aligned_cols=53 Identities=15% Similarity=0.174 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHHHhCCHHHHH
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKIDPDLG---DAWAYFYKFEIINGTEETQA 1232 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~---d~~~~l~~~~~~~G~~~~A~ 1232 (1278)
--+.+|..|++.|.+..|+..|+.+++..|+.+ +++..+...+.++|..+.+.
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 346689999999999999999999999999985 47888899999999988544
No 147
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.68 E-value=6.9e-05 Score=82.35 Aligned_cols=289 Identities=17% Similarity=0.183 Sum_probs=209.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHH
Q psy3224 754 ESCANQGAYECARAIYAQALATFPSKKSI--WLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLR 831 (1278)
Q Consensus 754 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~--~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~ 831 (1278)
.+....|+-..|++.-.++-+.-..+.+. ++.-++.-.-.|+++.|.+-|+.++. +|.... +-+.
T Consensus 92 liAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRl------------lGLR 158 (531)
T COG3898 92 LIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRL------------LGLR 158 (531)
T ss_pred hhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHH------------HhHH
Confidence 34445677777887777776555554443 33336666777888888888876653 233221 1223
Q ss_pred HHHHH-HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC---HHHHHHHHH-H
Q psy3224 832 AAYFE-KNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQAN---PNS---EEIWLAAVK-L 903 (1278)
Q Consensus 832 ~a~l~-~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~---p~~---~~~~~~la~-l 903 (1278)
..+++ ...|+.+.|+.+-+.+-...|.-+.++...-...+..|+++.|+++.+...... ++- ..+-+.-+. .
T Consensus 159 gLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 159 GLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 33333 357899999999999999999998888888888889999999999988765432 321 111122222 2
Q ss_pred HHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH
Q psy3224 904 ESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNL 983 (1278)
Q Consensus 904 ~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~ 983 (1278)
..-..+...|+..-..+. +..|+-...-...+..+.+.|+..++-.+++.+.+..|.|.++..+... +.|+.
T Consensus 239 s~ldadp~~Ar~~A~~a~------KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~a--r~gdt 310 (531)
T COG3898 239 SLLDADPASARDDALEAN------KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRA--RSGDT 310 (531)
T ss_pred HHhcCChHHHHHHHHHHh------hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHh--cCCCc
Confidence 223456777888777776 8889998888999999999999999999999999999999888765442 44443
Q ss_pred HHHH-HHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q psy3224 984 ERAL-QLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERR-KMLIKARSVLEKG 1061 (1278)
Q Consensus 984 ~~A~-~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~-g~~~~A~~~l~ka 1061 (1278)
...+ +-..+...+-|++.+..+..+...+..|++..|+.--+.+....|.. .++..++++.... |+-.+++.|+.++
T Consensus 311 a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 311 ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 3222 23344455788999999999999999999999999999999999864 4788889988855 9999999999999
Q ss_pred HHh
Q psy3224 1062 RLR 1064 (1278)
Q Consensus 1062 l~~ 1064 (1278)
+..
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 874
No 148
>KOG0128|consensus
Probab=98.66 E-value=0.00013 Score=87.65 Aligned_cols=400 Identities=16% Similarity=0.153 Sum_probs=206.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhc
Q psy3224 760 GAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNH 839 (1278)
Q Consensus 760 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~ 839 (1278)
+.-+.-+.-+++-+..++.+......|..++...|++++....-..+.+..|.++.+|+ .|+..-......
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl---------~Wl~d~~~mt~s 163 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWL---------EWLKDELSMTQS 163 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHH---------HHHHHHHhhccC
Confidence 34455566677777788888888888999999999998888888888888888877665 355544445555
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHH---HH
Q psy3224 840 GTRESLETLLQKAVAHCPKSEVLWLMGAKSKWL-------AGDVPAARGILSLAFQANPN----SEEIWLAAVKL---ES 905 (1278)
Q Consensus 840 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~-------~g~~~~A~~~l~~al~~~p~----~~~~~~~la~l---~~ 905 (1278)
++..++..+|++++... +++.+|..++..... .++++..+.+|.+++..... -..+|..+-.+ +.
T Consensus 164 ~~~~~v~~~~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l 242 (881)
T KOG0128|consen 164 EERKEVEELFEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYL 242 (881)
T ss_pred cchhHHHHHHHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHH
Confidence 88888899999988643 556677777776654 35677888888888865432 13334333322 22
Q ss_pred hcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHH-HH-----H-HHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q psy3224 906 ENNEYERARRLLAKARAQAGAFQANPNSEEIWLA-AV-----K-LESENNEYERARRLLAKARASAPTPRVMIQSAKLEW 978 (1278)
Q Consensus 906 ~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~-la-----~-~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~ 978 (1278)
..-..++.+.++...+ ..|-+..+... +. . ......+++.|..-
T Consensus 243 ~n~~~~qv~a~~~~el-------~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~---------------------- 293 (881)
T KOG0128|consen 243 CNVEQRQVIALFVREL-------KQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKN---------------------- 293 (881)
T ss_pred HhHHHHHHHHHHHHHH-------hccchhhhhHHHHHHHHhcchHHHHhccHHHHHHH----------------------
Confidence 2223344444444432 12211111000 00 0 00111122222221
Q ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHH
Q psy3224 979 CLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEE-RRKMLIKARSV 1057 (1278)
Q Consensus 979 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~-~~g~~~~A~~~ 1057 (1278)
..+-+..+++.++..|.-...|..+.......|.+..-...+++++...+.+...|+.++...- .++-.+.+...
T Consensus 294 ----l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~ 369 (881)
T KOG0128|consen 294 ----LAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSV 369 (881)
T ss_pred ----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccc
Confidence 1222333444444444445555555555555666555555556665555555555555543332 34444455555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHCCCcHHHHHHHHhcc------CCCCChhHHHHHHHHhc
Q psy3224 1058 LEKGRLRNPNCAELWLAAIRVEIRAGLKD-IANTMMAKALQECPNAGILWAEAIFLE------PRPQRKTKSVDALKKCE 1130 (1278)
Q Consensus 1058 l~kal~~~p~~~~~~~~l~~~~~~~g~~~-~A~~~~~kal~~~P~~~~~~~~~~~~~------~~~~~~~~A~~~l~k~~ 1130 (1278)
+.+++..+|-..++|..+...+.+.+... .-...+.+++...- .++..+.... .....++.-.+.|+.+.
T Consensus 370 ~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~---~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~ 446 (881)
T KOG0128|consen 370 HPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTV---ELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAW 446 (881)
T ss_pred cchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHH---HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHH
Confidence 55555555555555544443333222211 11122222222100 0111111110 11112222222222220
Q ss_pred c--CcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhh
Q psy3224 1131 H--DPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFW-CENKNQKCREWFNRTVKI 1207 (1278)
Q Consensus 1131 ~--~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~-~~g~~~~A~~~~~kal~~ 1207 (1278)
. .+. .+. .-.....++-.+|.++. ..++.++|+.+++..+..
T Consensus 447 ~eLt~~----~~~-------------------------------~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty 491 (881)
T KOG0128|consen 447 EELTEL----YGD-------------------------------QLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTY 491 (881)
T ss_pred HHHHHH----hhh-------------------------------hhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccC
Confidence 0 000 000 00000124555565553 456778888888887776
Q ss_pred CCCChh-HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy3224 1208 DPDLGD-AWAYFYKFEIINGTEETQAEVKKRCLA 1240 (1278)
Q Consensus 1208 ~P~~~d-~~~~l~~~~~~~G~~~~A~~~l~ka~~ 1240 (1278)
.-.+.. .|..++++...+|+...++.++++|..
T Consensus 492 ~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~ 525 (881)
T KOG0128|consen 492 GGGSIAGKWLEAINLEREYGDGPSARKVLRKAYS 525 (881)
T ss_pred CcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHh
Confidence 544433 788888888888888888887776665
No 149
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.64 E-value=4.3e-07 Score=105.85 Aligned_cols=109 Identities=16% Similarity=0.060 Sum_probs=101.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy3224 1004 WMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAG 1083 (1278)
Q Consensus 1004 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g 1083 (1278)
+...|..++..|++++|+.+|.+++..+|+++.+|..+|.++...|++++|+..+++++.++|+++.+|+.++.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Q psy3224 1084 LKDIANTMMAKALQECPNAGILWAEAIFL 1112 (1278)
Q Consensus 1084 ~~~~A~~~~~kal~~~P~~~~~~~~~~~~ 1112 (1278)
++++|+..|++++...|++..+...+..+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999877665544
No 150
>KOG0128|consensus
Probab=98.63 E-value=9.3e-05 Score=88.96 Aligned_cols=407 Identities=16% Similarity=0.192 Sum_probs=222.0
Q ss_pred chHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHhc-------CCchHHHHH
Q psy3224 495 NDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARL-------QPVDTARAV 567 (1278)
Q Consensus 495 g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~L-------~~~~~A~~~ 567 (1278)
+.-+.=...+++-+..++.+......++.++...|+++.-...-.++....|.++.+|+.++.= +...++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 3444556667778888999999999999999999999988888888888899999999887651 123345678
Q ss_pred HHHHHHhCCCCHHHHHHHHHchh----------hHHHHHHHHHHHHHhCCCCH----HHHHHHHhcC-------CHHHHH
Q psy3224 568 IAQAVRHIPTSVRIWIKAADLET----------ETKAKRRVYRKALEHIPNSV----RLWKAAVELE-------DPEDAR 626 (1278)
Q Consensus 568 l~kaL~~~P~s~~lw~~~~~le~----------~~~~A~~ll~rAle~~P~s~----~Lw~al~~l~-------~~e~A~ 626 (1278)
|+++|. +-+++.+|..++++.. +.+.-+.+|.+|+...-... .+|.+|..++ ..++..
T Consensus 173 ~ekal~-dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALG-DYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhc-ccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 888886 5588999999887443 34556788899887655443 6888887776 223445
Q ss_pred HHHHHHHHhCCCCHHHHH----HHHH-------hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 627 ILLSRAVECCPTSVELWL----ALAR-------LETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDR 695 (1278)
Q Consensus 627 ~~l~kal~~~P~~~~~w~----~la~-------l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~ 695 (1278)
.++.+.+.. |-+..+.. ...+ ..+++.|..-+. .-.-.+++
T Consensus 252 a~~~~el~~-~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~---------------------------~~~~~~e~ 303 (881)
T KOG0128|consen 252 ALFVRELKQ-PLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLA---------------------------KILFKFER 303 (881)
T ss_pred HHHHHHHhc-cchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHH---------------------------HHHHHHHH
Confidence 555555543 33333210 0000 112222221111 11112222
Q ss_pred HHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q psy3224 696 ALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCAN-QGAYECARAIYAQALA 774 (1278)
Q Consensus 696 al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 774 (1278)
.++.. ......|+.+...+...|....-..+++.++...... ...|+.++...-. .+-.+.+...+-+++.
T Consensus 304 ~~q~~-----~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~---~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R 375 (881)
T KOG0128|consen 304 LVQKE-----PIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLD---RALWIGYGVYLDTELKVPQRGVSVHPRAVR 375 (881)
T ss_pred Hhhhh-----HHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhcccc---HHHHhhhhhhcccccccccccccccchhhc
Confidence 22211 1112345555555555555544444555444432221 3466665544322 2334456677778888
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhc-------------C
Q psy3224 775 TFPSKKSIWLRAAYFEKNHGTRES-LETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNH-------------G 840 (1278)
Q Consensus 775 ~~P~~~~~~~~la~~~~~~g~~~~-A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~-------------g 840 (1278)
.+|-...+|...-..+.+.+.... ....+.+++...- .++..+..+.+.. .
T Consensus 376 ~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~---------------~l~~~~~~~rr~~~~~~~s~~~s~lr~ 440 (881)
T KOG0128|consen 376 SCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTV---------------ELHNDYLAYRRRCTNIIDSQDYSSLRA 440 (881)
T ss_pred CCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHH---------------HHHHHHHHHHHhhcccchhhhHHHHHH
Confidence 888888888776644444443322 2233333332100 0111111111111 1
Q ss_pred CHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHhcCcHHHHHHHH
Q psy3224 841 TRESLETLLQKAVAH-CPKSEVLWLMGAKSKWL-AGDVPAARGILSLAFQANPNSEE-IWLAAVKLESENNEYERARRLL 917 (1278)
Q Consensus 841 ~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~-~g~~~~A~~~l~~al~~~p~~~~-~~~~la~l~~~~g~~~~A~~~l 917 (1278)
.+..|...|...... --.....+-..|+++.. .++.+.|+.+....+.....+.. .|+..+.+....|+...++.++
T Consensus 441 ~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~ 520 (881)
T KOG0128|consen 441 AFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVL 520 (881)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHH
Confidence 222233333333322 11123344555665554 56777777777776665554444 7777777777777777777777
Q ss_pred HHHHHhhhhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 918 AKARAQAGAFQANPN-SEEIWLAAVKLESENNEYERARRLL 957 (1278)
Q Consensus 918 ~~al~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l 957 (1278)
+++... ...|+ ...++..+-++....|.++......
T Consensus 521 R~ay~~----~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~~ 557 (881)
T KOG0128|consen 521 RKAYSQ----VVDPEDALEVLEFFRRFEREYGTLESFDLCP 557 (881)
T ss_pred HHHHhc----CcCchhHHHHHHHHHHHHhccccHHHHhhhH
Confidence 776521 12222 2233444444555555555444443
No 151
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.60 E-value=1.1e-06 Score=85.12 Aligned_cols=102 Identities=14% Similarity=0.103 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q psy3224 1003 LWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS---VPLWIMLANLEERRKMLIKARSVLEKGRLRNPNC---AELWLAAI 1076 (1278)
Q Consensus 1003 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~---~~~~~~l~ 1076 (1278)
.++.+|..+...|++++|...|.+++..+|++ ..+++.+|.++...|++++|+..|++++..+|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 44445555555555555555555555555443 3344455555555555555555555555555443 33455555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHH
Q psy3224 1077 RVEIRAGLKDIANTMMAKALQECPNAGI 1104 (1278)
Q Consensus 1077 ~~~~~~g~~~~A~~~~~kal~~~P~~~~ 1104 (1278)
.++...|++++|...+.+++...|++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 5555555555555555555555555443
No 152
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.1e-06 Score=94.95 Aligned_cols=122 Identities=16% Similarity=0.143 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHH
Q psy3224 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERR---KMLIKARSVL 1058 (1278)
Q Consensus 982 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~---g~~~~A~~~l 1058 (1278)
..+..+.-++.-+..+|++.+-|..+|.+|..+|++..|...|.+++++.|+++.++..++.++... ....++...|
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 4566677788888999999999999999999999999999999999999999999999998887743 3457889999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Q psy3224 1059 EKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAG 1103 (1278)
Q Consensus 1059 ~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~ 1103 (1278)
++++..+|.+......++..+++.|++.+|...++.+++..|.+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999887653
No 153
>KOG2471|consensus
Probab=98.59 E-value=9.8e-05 Score=83.21 Aligned_cols=357 Identities=14% Similarity=0.113 Sum_probs=217.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCC--------c
Q psy3224 862 LWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPN--------S 933 (1278)
Q Consensus 862 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~--------~ 933 (1278)
+.......+....+...+..-.+.++....+++......+.++...|++.+|.+.+...- +...|. .
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sn-----i~~~~g~~~T~q~~~ 282 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSN-----IHKEAGGTITPQLSS 282 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcc-----cccccCccccchhhh
Confidence 344455566677777777777777777777888899999999999999999998887642 222333 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C--------CC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 934 EEIWLAAVKLESENNEYERARRLLAKARAS-A--------PT----------PRVMIQSAKLEWCLDNLERALQLLDEAI 994 (1278)
Q Consensus 934 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~-~--------p~----------~~~~~~la~~~~~~g~~~~A~~~l~~al 994 (1278)
-..|.++|.+.++.+.+.-+..+|.++++. + |. ..+.++.|..+...|++-.|.++|.+++
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAV 362 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHH
Confidence 345788999999999999999999999961 1 11 4788899999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHHcCC---HHHHHHHHHH--------------H--HHh-----CCCC---HHHHHHHHHHHHH
Q psy3224 995 KVFPDFAKLWMMKGQIEEQKNL---LDKAHDTFSQ--------------A--IKK-----CPHS---VPLWIMLANLEER 1047 (1278)
Q Consensus 995 ~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~--------------a--l~~-----~p~~---~~~~~~la~l~~~ 1047 (1278)
+.+-.+|.+|+.++.+++...+ .++-.....+ . ++. .|.+ +..-..++.+..+
T Consensus 363 ~vfh~nPrlWLRlAEcCima~~~~l~ee~~~s~s~~~i~~~vig~g~rr~~m~~~nt~~~~~qS~~~p~~slefA~vCLr 442 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIMALQKGLLEEGNSSLSRSEIRVHVIGKGNRRQLMIEENTYVELAQSNQLPKLSLEFARVCLR 442 (696)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhhhhhhhccCCcccccceeeeecccchhheeecccceeccccccCCCccccHHHHHHHH
Confidence 9999999999999998754321 1111110000 0 000 0000 1111112222111
Q ss_pred cCCH-----HHHHHHHHHHHH----------------------------hCC-CCH-----------HHHHHHHHHHHHc
Q psy3224 1048 RKML-----IKARSVLEKGRL----------------------------RNP-NCA-----------ELWLAAIRVEIRA 1082 (1278)
Q Consensus 1048 ~g~~-----~~A~~~l~kal~----------------------------~~p-~~~-----------~~~~~l~~~~~~~ 1082 (1278)
.+-+ ..--..+.-+.. -.| +.+ .++...+.+...+
T Consensus 443 nal~Ll~e~q~~~~~~~~a~ns~~~g~~~e~~e~~~t~~Sk~h~gd~~~~~p~ssp~~~e~leNm~~ai~A~~ayV~L~L 522 (696)
T KOG2471|consen 443 NALYLLNEKQDLGSILSVAMNSTKEGSSSEHEEGNTTTDSKEHKGDMSQEIPQSSPSAFEDLENMRQAIFANMAYVELEL 522 (696)
T ss_pred hhhhcCchhhcchhhhhhhccccccCCCCcCCCCCCCcchhcCCCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 000000000000 011 111 2456666788899
Q ss_pred CCHHHHHHHHHHHHHHCCCcHHHHHHHHhcc-----CCCCChhHHHHHHHHhc-cCcchhhhhhhhhhhhcccccccccC
Q psy3224 1083 GLKDIANTMMAKALQECPNAGILWAEAIFLE-----PRPQRKTKSVDALKKCE-HDPHVLLAVSKLFWCENKNQKCHRSG 1156 (1278)
Q Consensus 1083 g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~-----~~~~~~~~A~~~l~k~~-~~p~~~~~~~~l~~~~~~~~~A~~~~ 1156 (1278)
|+.-.|...-.+.++. |+-..++..++.+| .-..+..+|...|.-.. .+-......+
T Consensus 523 gd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n---------------- 585 (696)
T KOG2471|consen 523 GDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYN---------------- 585 (696)
T ss_pred cChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccc----------------
Confidence 9999999999998875 44445555555555 23344444544443210 0000000000
Q ss_pred ccccccccchhhhhhh--------hCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CChhHHHHHHHH
Q psy3224 1157 SRRCMGVKTKSVDALK--------KCEHD-----PHVLLAVSKLFWCENKNQKCREWFNRTVKIDP--DLGDAWAYFYKF 1221 (1278)
Q Consensus 1157 ~~~~~~~~~~a~~~l~--------~~p~~-----~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P--~~~d~~~~l~~~ 1221 (1278)
...++.-..-.+.|+ ..|.. -.++++||.++.-+|++++|+.++..|..+-+ .++.+...-..+
T Consensus 586 -~~Df~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyi 664 (696)
T KOG2471|consen 586 -QEDFDQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYI 664 (696)
T ss_pred -hhhhhhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHH
Confidence 001111000011111 11222 23788999999999999999999999999877 455666666667
Q ss_pred HHHhCCHHHHHHHHHHHHHh
Q psy3224 1222 EIINGTEETQAEVKKRCLAA 1241 (1278)
Q Consensus 1222 ~~~~G~~~~A~~~l~ka~~~ 1241 (1278)
..++|+...|...++++..+
T Consensus 665 dL~~G~~q~al~~lk~~~~~ 684 (696)
T KOG2471|consen 665 DLMLGRSQDALARLKQCTHV 684 (696)
T ss_pred HHhcCCCcchHHHHHhcccc
Confidence 77999999999999988653
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.59 E-value=1e-06 Score=85.50 Aligned_cols=104 Identities=18% Similarity=0.173 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF---AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS---VPLWIML 1041 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 1041 (1278)
..++..|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|+++.|...|+.++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 455666777777777777777777777777665 4567777777777777777777777777777664 4567777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 1042 ANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 1042 a~l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
+.++...|++++|..+|++++...|++..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 777777777777777777777777776654
No 155
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.58 E-value=7.7e-06 Score=89.72 Aligned_cols=184 Identities=9% Similarity=-0.016 Sum_probs=123.6
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q psy3224 708 NREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKS---IWL 784 (1278)
Q Consensus 708 ~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~---~~~ 784 (1278)
+...++..|..+...|+++.|...|+.++...|..+....+.+.+|.++.+.++++.|+..|++.++.+|+++. +++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 45566677777777777777777777777777766655667788888999999999999999999999888753 455
Q ss_pred HHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHH
Q psy3224 785 RAAYFEKNHG---------------T---RESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLE 846 (1278)
Q Consensus 785 ~la~~~~~~g---------------~---~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~ 846 (1278)
.+|.+....+ + ...|+..|++.++..|++.-. .+|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------------------~~A~ 164 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------------------TDAT 164 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------------------HHHH
Confidence 6665543332 1 234556666777777766421 0011
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy3224 847 TLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNS---EEIWLAAVKLESENNEYERARRLLAKA 920 (1278)
Q Consensus 847 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~l~~~~g~~~~A~~~l~~a 920 (1278)
..+..+.. .-..--+..|..|.+.|.+..|+.-++.+++..|++ .+++..++..+...|..++|.......
T Consensus 165 ~rl~~l~~---~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 165 KRLVFLKD---RLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11111100 111223467778888888888888888888888875 566777777788888888777766543
No 156
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.58 E-value=3.9e-06 Score=89.87 Aligned_cols=175 Identities=16% Similarity=0.117 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q psy3224 711 HWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKK---SIWLRAA 787 (1278)
Q Consensus 711 ~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la 787 (1278)
.++..|..+...|++..|...|+.++...|..+....+++.+|.++...|+++.|+..|++.+..+|++. .+++.+|
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 4444455555555555555555555555555555567888888888888999999999999998888865 3455555
Q ss_pred HHHHHc-----------CCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q psy3224 788 YFEKNH-----------GTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHC 856 (1278)
Q Consensus 788 ~~~~~~-----------g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~ 856 (1278)
.++... +...+|...|+..+...|++.-. .+|...+..+-.
T Consensus 87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------------------~~A~~~l~~l~~-- 138 (203)
T PF13525_consen 87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------------------EEAKKRLAELRN-- 138 (203)
T ss_dssp HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH--------------------------HHHHHHHHHHHH--
T ss_pred HHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH--------------------------HHHHHHHHHHHH--
Confidence 554332 22335666666666666665421 011111111111
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhcCcHHHHH
Q psy3224 857 PKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSE---EIWLAAVKLESENNEYERAR 914 (1278)
Q Consensus 857 P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~la~l~~~~g~~~~A~ 914 (1278)
.-..--+..|..|.+.|.+..|+.-++.+++..|++. .++..++..+..+|..+.|.
T Consensus 139 -~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 139 -RLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred -HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 1112245678889999999999999999999999863 46677777788777776443
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.57 E-value=1e-06 Score=99.20 Aligned_cols=140 Identities=18% Similarity=0.223 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQ-KNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEE 1046 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~ 1046 (1278)
.+|..+..+..+.+..+.|+.+|.+|++..+....+|...|.+... .++.+.|..+|+.+++..|.+..+|..+...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4677788888777778888888888886656667888888888777 456666999999999999988889998888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Q psy3224 1047 RRKMLIKARSVLEKGRLRNPNCA---ELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWA 1107 (1278)
Q Consensus 1047 ~~g~~~~A~~~l~kal~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~ 1107 (1278)
..++.+.|+.+|++++..-|... .+|..++.++...|+.+....+.+++.+..|....+..
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence 88999999999999988777554 68999999999999999999999999999998665554
No 158
>KOG3616|consensus
Probab=98.57 E-value=0.0046 Score=72.79 Aligned_cols=364 Identities=17% Similarity=0.118 Sum_probs=174.9
Q ss_pred hcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 618 ELEDPEDARILLSRAVECCP---TSVELWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIID 694 (1278)
Q Consensus 618 ~l~~~e~A~~~l~kal~~~P---~~~~~w~~la~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~ 694 (1278)
....+.+|+.+++..-...- ....+--.|+..++|+.|..+|.++- .......+|-+.|++..|.++-.
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHHHHhccccHHHHHHHHH
Confidence 33456666666654433321 12233344566677777776665531 12233455666666666665555
Q ss_pred HHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHh-----------------------cCCCccchHhhHHH
Q psy3224 695 RALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIG-----------------------YGVEQEDRKHTWME 751 (1278)
Q Consensus 695 ~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~-----------------------~~~~~~~~~~~~~~ 751 (1278)
++. +.+.....++..|+.+.+.|.+.+|+.+|-.+-. ..++ .-......
T Consensus 816 e~~------~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d--~l~dt~~~ 887 (1636)
T KOG3616|consen 816 ECH------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGD--HLHDTHKH 887 (1636)
T ss_pred Hhc------CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChh--hhhHHHHH
Confidence 443 2133345566666666666666666554422100 0000 11234445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchH--HHHHhhccc------
Q psy3224 752 DAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSE--VLWLMGAKS------ 823 (1278)
Q Consensus 752 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~--~~~~~~~~~------ 823 (1278)
++..+...|+...|...|-++- -|....++|...+-+++|..+-+. ....+. ...++-+++
T Consensus 888 f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~lw~dayriakt---egg~n~~k~v~flwaksiggdaa 956 (1636)
T KOG3616|consen 888 FAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASELWEDAYRIAKT---EGGANAEKHVAFLWAKSIGGDAA 956 (1636)
T ss_pred HHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhhhHHHHHHHHhc---cccccHHHHHHHHHHHhhCcHHH
Confidence 5666666666666665555442 233344444444444443322211 111111 011111111
Q ss_pred ----chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy3224 824 ----NKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLA 899 (1278)
Q Consensus 824 ----~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 899 (1278)
+...+....+.+....+.++-|..+-+-+.+. ..+.+++.++..+...|++++|-+.|-.+++++.-+.. |..
T Consensus 957 vkllnk~gll~~~id~a~d~~afd~afdlari~~k~--k~~~vhlk~a~~ledegk~edaskhyveaiklntynit-wcq 1033 (1636)
T KOG3616|consen 957 VKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD--KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNIT-WCQ 1033 (1636)
T ss_pred HHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc--cCccchhHHhhhhhhccchhhhhHhhHHHhhcccccch-hhh
Confidence 00111112222333344455455544444332 34567888999999999999999999999988764321 111
Q ss_pred -------------------HHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 900 -------------------AVKLESENNEYERARRLLAKARAQAGAFQANPNS-EEIWLAAVKLESENNEYERARRLLAK 959 (1278)
Q Consensus 900 -------------------la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~ 959 (1278)
...+....++|..|..+.+ ..+|+. ++++..-++-....|++.+|..++-+
T Consensus 1034 avpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae---------~h~~~~l~dv~tgqar~aiee~d~~kae~fllr 1104 (1636)
T KOG3616|consen 1034 AVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAE---------AHCEDLLADVLTGQARGAIEEGDFLKAEGFLLR 1104 (1636)
T ss_pred cccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHH---------hhChhhhHHHHhhhhhccccccchhhhhhheee
Confidence 1122333344444433322 223332 34455555555566777777666544
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCHHHHHHH---------------HH-HHHHhCCChHHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 960 ARASAPTPRVMIQSAKLEWCLDNLERALQL---------------LD-EAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDT 1023 (1278)
Q Consensus 960 al~~~p~~~~~~~la~~~~~~g~~~~A~~~---------------l~-~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 1023 (1278)
+- .|+..+ +.+...+-+..|+.+ |+ .+++....-.+.+..-+.-..+.|+|.+|..+
T Consensus 1105 an--kp~i~l-----~yf~e~~lw~dalri~kdylp~q~a~iqeeyek~~~k~gargvd~fvaqak~weq~gd~rkav~~ 1177 (1636)
T KOG3616|consen 1105 AN--KPDIAL-----NYFIEAELWPDALRIAKDYLPHQAAAIQEEYEKEALKKGARGVDGFVAQAKEWEQAGDWRKAVDA 1177 (1636)
T ss_pred cC--CCchHH-----HHHHHhccChHHHHHHHhhChhHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhcccHHHHHHH
Confidence 31 232100 011122222222222 22 23333333355666667777888888888887
Q ss_pred HHHH
Q psy3224 1024 FSQA 1027 (1278)
Q Consensus 1024 ~~~a 1027 (1278)
+-+.
T Consensus 1178 ~lki 1181 (1636)
T KOG3616|consen 1178 LLKI 1181 (1636)
T ss_pred Hhhh
Confidence 7665
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.56 E-value=1.6e-06 Score=98.11 Aligned_cols=124 Identities=15% Similarity=0.139 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHc
Q psy3224 875 DVPAARGILSLAFQANPN------SEEIWLAAVKLESEN-NEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESEN 947 (1278)
Q Consensus 875 ~~~~A~~~l~~al~~~p~------~~~~~~~la~l~~~~-g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~ 947 (1278)
++++|+.+|++++...-. -..++..+|.++... +++++|+.+|++|+..+......-.....+..++.++...
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 555555555555433210 023344455555555 6666666666666543321111111122333444455555
Q ss_pred CCHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 948 NEYERARRLLAKARASAPT--------PRVMIQSAKLEWCLDNLERALQLLDEAIKVFP 998 (1278)
Q Consensus 948 g~~~~A~~~l~~al~~~p~--------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 998 (1278)
|+|++|+.+|+++....-+ ...++..+.++...|++..|...+++....+|
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5555555555554443211 12333334444444555555555555544444
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.53 E-value=8.8e-07 Score=81.07 Aligned_cols=97 Identities=16% Similarity=0.210 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy3224 970 MIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRK 1049 (1278)
Q Consensus 970 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g 1049 (1278)
++.+|.++...|++++|+..++++++..|.++.++..+|.++...+++++|..+|++++...|.+..++..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 34444444444555555555555555555444444455555555555555555555555444444444444444444445
Q ss_pred CHHHHHHHHHHHHHhCC
Q psy3224 1050 MLIKARSVLEKGRLRNP 1066 (1278)
Q Consensus 1050 ~~~~A~~~l~kal~~~p 1066 (1278)
++++|..++.+++..+|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 55555555444444433
No 161
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.52 E-value=3.2e-07 Score=79.43 Aligned_cols=67 Identities=15% Similarity=0.349 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhC-CHHHHHHHHHHHHHhCC
Q psy3224 1177 DPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIING-TEETQAEVKKRCLAAEP 1243 (1278)
Q Consensus 1177 ~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G-~~~~A~~~l~ka~~~~P 1243 (1278)
++.++..+|.+++..|++++|+.+|+++++++|+++.+|..++.++...| ++++|.+.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56799999999999999999999999999999999999999999999999 79999999999999998
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.52 E-value=1e-06 Score=80.65 Aligned_cols=99 Identities=19% Similarity=0.131 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy3224 1003 LWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRA 1082 (1278)
Q Consensus 1003 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~ 1082 (1278)
+++.+|.++...|++++|+..+.++++..|.+..++..++.++...+++++|+.+|++++...|.+..++..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHCCC
Q psy3224 1083 GLKDIANTMMAKALQECPN 1101 (1278)
Q Consensus 1083 g~~~~A~~~~~kal~~~P~ 1101 (1278)
|+++.|...+.+++..+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999988774
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.49 E-value=7.5e-06 Score=85.38 Aligned_cols=91 Identities=10% Similarity=0.076 Sum_probs=46.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHH
Q psy3224 932 NSEEIWLAAVKLESENNEYERARRLLAKARASAPT----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMK 1007 (1278)
Q Consensus 932 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 1007 (1278)
.....++.+|.++...|++++|+.+|++++...|+ ..++..+|.++...|++++|+.++.+++...|++...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 34444555555555555555555555555544332 23445555555555555555555555555555555555555
Q ss_pred HHHHHHcCCHHHHHH
Q psy3224 1008 GQIEEQKNLLDKAHD 1022 (1278)
Q Consensus 1008 a~~~~~~g~~~~A~~ 1022 (1278)
|.++...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 555555544444443
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.48 E-value=5.9e-06 Score=93.48 Aligned_cols=171 Identities=16% Similarity=0.171 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHH
Q psy3224 862 LWLMGAKSKWLAGDVPAARGILSLAFQANP--N----SEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEE 935 (1278)
Q Consensus 862 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~----~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~ 935 (1278)
++...|..|...+++++|...|.++....- + ....+...+.++.+. ++++|+.+|++++..+.
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~---------- 105 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYR---------- 105 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHH----------
Confidence 344555666667777777777776654321 1 123344444444443 66666666666653332
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC------hHHHHHHHH
Q psy3224 936 IWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCL-DNLERALQLLDEAIKVFPD------FAKLWMMKG 1008 (1278)
Q Consensus 936 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~-g~~~~A~~~l~~al~~~p~------~~~~~~~la 1008 (1278)
..|++..|- .++..+|.++... |++++|+.+|++++..+.. ....+..++
T Consensus 106 ----------~~G~~~~aA-------------~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A 162 (282)
T PF14938_consen 106 ----------EAGRFSQAA-------------KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAA 162 (282)
T ss_dssp ----------HCT-HHHHH-------------HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----------hcCcHHHHH-------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHH
Confidence 222222221 2333344444444 5555555555555543221 123444555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 1009 QIEEQKNLLDKAHDTFSQAIKKCPHS-------VPLWIMLANLEERRKMLIKARSVLEKGRLRNP 1066 (1278)
Q Consensus 1009 ~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p 1066 (1278)
.++...|+|++|+.+|+++...+-++ ...++..+.++...|++..|...|++....+|
T Consensus 163 ~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 163 DLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55555555555555555555433211 11233334445555555555555555555554
No 165
>KOG3081|consensus
Probab=98.48 E-value=7.2e-05 Score=78.78 Aligned_cols=256 Identities=11% Similarity=-0.008 Sum_probs=174.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q psy3224 837 KNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRL 916 (1278)
Q Consensus 837 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~ 916 (1278)
...|+|..++...++.-... .....-+.+.+.|...|.+...+.-...+- .| ...+...++.+...-++.+.-+.-
T Consensus 19 fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~-~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK--AT-PLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred HHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc--CC-hHHHHHHHHHHhhCcchhHHHHHH
Confidence 34577776766655443332 566677777888888887655443333221 11 234445555555555555555444
Q ss_pred HHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 917 LAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKV 996 (1278)
Q Consensus 917 l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 996 (1278)
+.+.+. ......+......-+.++...+++++|........ +-++...-..++.++.+.+-|...++++.+.
T Consensus 95 l~E~~a----~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 95 LYELVA----DSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHH----hhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 443331 12233333445566778889999999998887632 2344445566777888889999999998887
Q ss_pred CCChHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy3224 997 FPDFAKLWMMKGQIEE----QKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072 (1278)
Q Consensus 997 ~p~~~~~~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~ 1072 (1278)
+.+. .+..++..+. ..+++..|.-+|+..-+++|..+.+....+.+...++++++|..+++.++..++++++.+
T Consensus 167 ded~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL 244 (299)
T KOG3081|consen 167 DEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETL 244 (299)
T ss_pred chHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHH
Confidence 6543 3344444432 234688899999999998888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHH-HHHHHHHHHHCCCcHHHH
Q psy3224 1073 LAAIRVEIRAGLKDIA-NTMMAKALQECPNAGILW 1106 (1278)
Q Consensus 1073 ~~l~~~~~~~g~~~~A-~~~~~kal~~~P~~~~~~ 1106 (1278)
.+++.+-...|...++ .+.+.+....+|.++.+-
T Consensus 245 ~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 245 ANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 9999888888876554 456677777888887543
No 166
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.48 E-value=5.3e-06 Score=83.74 Aligned_cols=115 Identities=16% Similarity=0.069 Sum_probs=47.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHH
Q psy3224 980 LDNLERALQLLDEAIKVFPDF---AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS---VPLWIMLANLEERRKMLIK 1053 (1278)
Q Consensus 980 ~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~l~~~~g~~~~ 1053 (1278)
.++...+...++..+..+|++ ..+.+.++.++...|++++|...|+.++...|+. ..+.+.++.++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 334444444444444444443 2333334444444444444444444444443322 1233344444444444444
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 1054 ARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKA 1095 (1278)
Q Consensus 1054 A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ka 1095 (1278)
|+..++.. ...+-.+..+...|.++...|++++|+..|+++
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 44444331 112222333344444444444444444444443
No 167
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.47 E-value=0.00019 Score=77.74 Aligned_cols=221 Identities=25% Similarity=0.232 Sum_probs=140.7
Q ss_pred CHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q psy3224 841 TRESLETLLQKAVAHCPK--SEVLWLMGAKSKWLAGDVPAARGILSLAFQ--ANPNSEEIWLAAVKLESENNEYERARRL 916 (1278)
Q Consensus 841 ~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~--~~p~~~~~~~~la~l~~~~g~~~~A~~~ 916 (1278)
.+..+...+..++...+. ........+..+...+.+..+...+...+. ..+.....+...+.+....+.+..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334456666666666655 356667777777778888888888887776 5666677777777777777777777777
Q ss_pred HHHHHHhhhhhhcCCCcHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 917 LAKARAQAGAFQANPNSEEIWLAAVK-LESENNEYERARRLLAKARASAPT----PRVMIQSAKLEWCLDNLERALQLLD 991 (1278)
Q Consensus 917 l~~al~~~~~l~~~p~~~~~~~~la~-~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~l~ 991 (1278)
+..+. ...+........... ++...++++.|...|.+++...|. ...+...+..+...++++.|+..+.
T Consensus 118 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 118 LEKAL------ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHH------cCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 77776 444444344444444 666777777777777777665441 2334444444555666666666666
Q ss_pred HHHHhCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 992 EAIKVFPD-FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPN 1067 (1278)
Q Consensus 992 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~ 1067 (1278)
+++...+. ....+..++..+...+++..|...+..++...|.....+..++..+...+.+..+...+.+++...|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 66666666 46666666666666666666666666666666654445555555544555566666666666666665
No 168
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.47 E-value=0.00027 Score=76.45 Aligned_cols=225 Identities=25% Similarity=0.244 Sum_probs=188.7
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCH
Q psy3224 873 AGDVPAARGILSLAFQANPN--SEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEY 950 (1278)
Q Consensus 873 ~g~~~~A~~~l~~al~~~p~--~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 950 (1278)
.+.+..+...+...+...+. ........+..+...+.+..+...+...... ...+.....+...+..+...+++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 111 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEALGKY 111 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHHhhH
Confidence 56777888888888888876 3678888888899999999999999887611 15788888899999999999999
Q ss_pred HHHHHHHHHHHHhCCCH-HHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 951 ERARRLLAKARASAPTP-RVMIQSAK-LEWCLDNLERALQLLDEAIKVFP---DFAKLWMMKGQIEEQKNLLDKAHDTFS 1025 (1278)
Q Consensus 951 ~~A~~~l~~al~~~p~~-~~~~~la~-~~~~~g~~~~A~~~l~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~ 1025 (1278)
..+...+..++...+.. ........ ++...++++.|...+.+++...| .....+...+..+...+++..|...+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 99999999999887764 33444444 78899999999999999988776 456677777777888899999999999
Q ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q psy3224 1026 QAIKKCPH-SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPN 1101 (1278)
Q Consensus 1026 ~al~~~p~-~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~ 1101 (1278)
+++...+. ....+..++..+...+.+..|...+..++...|.....+...+..+...+..+++...+.+++...|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999998 68889999999999999999999999999999986666677777666777899999999999999887
No 169
>KOG2300|consensus
Probab=98.46 E-value=0.0054 Score=69.79 Aligned_cols=437 Identities=13% Similarity=0.063 Sum_probs=232.8
Q ss_pred hhHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCchHHHHHhh
Q psy3224 747 HTWMEDAESCANQG--AYECARAIYAQALATFPSKK---SIWLRAAYFEK-NHGTRESLETLLQKAVAHCPKSEVLWLMG 820 (1278)
Q Consensus 747 ~~~~~la~~~~~~g--~~~~A~~~~~~al~~~P~~~---~~~~~la~~~~-~~g~~~~A~~~l~~al~~~p~~~~~~~~~ 820 (1278)
.....+|+.+...| ++..++++++..+...|.+. ...+.+|.++. -..+++.|...++++..+...-+..+-.
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv- 86 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV- 86 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh-
Confidence 35566788888888 88999999999998887654 34566666554 5688999999999987664333222100
Q ss_pred cccchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC-
Q psy3224 821 AKSNKKSIWLRAAYFEKNHG-TRESLETLLQKAVAHCPKSE----VLWLMGAKSKWLAGDVPAARGILSLAFQAN-PNS- 893 (1278)
Q Consensus 821 ~~~~~~~~~l~~a~l~~~~g-~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~- 893 (1278)
+ -....-++.++.... .+..+..++.++++.....+ .+.+.+++++.-..++..|.+.+.-..... +..
T Consensus 87 -K---f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~ 162 (629)
T KOG2300|consen 87 -K---FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICF 162 (629)
T ss_pred -h---hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhh
Confidence 0 011122233333333 78889999999999866544 567788999999999999999866543322 211
Q ss_pred --HHHHHHHH--HHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHH---HH-H-HHHHHHHcCCHHHHHHHHHHHHHh-
Q psy3224 894 --EEIWLAAV--KLESENNEYERARRLLAKARAQAGAFQANPNSEEI---WL-A-AVKLESENNEYERARRLLAKARAS- 963 (1278)
Q Consensus 894 --~~~~~~la--~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~---~~-~-la~~~~~~g~~~~A~~~l~~al~~- 963 (1278)
..+.+.+. .+.....+......++..+-........+|.+.+. ++ . -...|...|+...+...+++....
T Consensus 163 ~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~si 242 (629)
T KOG2300|consen 163 PYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSI 242 (629)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHH
Confidence 12222222 22333334444444444433222222333433222 11 1 122344566666666655544322
Q ss_pred ---CCC-------------H--HHHHHH----HHHH-------HHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc
Q psy3224 964 ---APT-------------P--RVMIQS----AKLE-------WCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQK 1014 (1278)
Q Consensus 964 ---~p~-------------~--~~~~~l----a~~~-------~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 1014 (1278)
.+. + ..|+-- +.++ ...|-+++|.++-++++....... +
T Consensus 243 qtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklk------------q 310 (629)
T KOG2300|consen 243 QTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLK------------Q 310 (629)
T ss_pred hccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcc------------c
Confidence 110 1 111110 0011 123445555555554444311000 0
Q ss_pred CC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHcC
Q psy3224 1015 NL-LDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLR---NPN-------CAELWLAAIRVEIRAG 1083 (1278)
Q Consensus 1015 g~-~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~---~p~-------~~~~~~~l~~~~~~~g 1083 (1278)
.+ ....+..|+ ...+-.++-+..-.|++.+|++-...+... .|. .+.+...+|......+
T Consensus 311 ~d~~srilsm~k---------m~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~ 381 (629)
T KOG2300|consen 311 ADLMSRILSMFK---------MILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVN 381 (629)
T ss_pred ccchhHHHHHHH---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcc
Confidence 00 000000000 112223334444455555555554444432 222 2233444455555566
Q ss_pred CHHHHHHHHHHHHHHCCCcHHHH----HHHHhccCCCCChhHHHHHHHHhc-cCcchhhhhhhhhhhhcccccccccCcc
Q psy3224 1084 LKDIANTMMAKALQECPNAGILW----AEAIFLEPRPQRKTKSVDALKKCE-HDPHVLLAVSKLFWCENKNQKCHRSGSR 1158 (1278)
Q Consensus 1084 ~~~~A~~~~~kal~~~P~~~~~~----~~~~~~~~~~~~~~~A~~~l~k~~-~~p~~~~~~~~l~~~~~~~~~A~~~~~~ 1158 (1278)
.++.|...|..|++.... .++| ..++..|.+.++-+.-.++++... .+.. ..+.-...
T Consensus 382 ~~enAe~hf~~a~k~t~~-~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~---s~ssq~l~------------- 444 (629)
T KOG2300|consen 382 CYENAEFHFIEATKLTES-IDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTN---SLSSQRLE------------- 444 (629)
T ss_pred hHHHHHHHHHHHHHhhhH-HHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCC---cchHHHHH-------------
Confidence 666666666666655422 2222 234455555555555455555441 1111 00000000
Q ss_pred ccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh-------HHHHHHHHHHHhCCHHHH
Q psy3224 1159 RCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGD-------AWAYFYKFEIINGTEETQ 1231 (1278)
Q Consensus 1159 ~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d-------~~~~l~~~~~~~G~~~~A 1231 (1278)
..+++..|...+..+++.+|+..+.+.++.. +..| .+..++.+....|+..++
T Consensus 445 -------------------a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma-naed~~rL~a~~LvLLs~v~lslgn~~es 504 (629)
T KOG2300|consen 445 -------------------ASILYVYGLFAFKQNDLNEAKRFLRETLKMA-NAEDLNRLTACSLVLLSHVFLSLGNTVES 504 (629)
T ss_pred -------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 1278888988899999999999999999875 3222 566677888889999999
Q ss_pred HHHHHHHHHhCCCCc
Q psy3224 1232 AEVKKRCLAAEPKHG 1246 (1278)
Q Consensus 1232 ~~~l~ka~~~~P~~~ 1246 (1278)
.++..-++++..+-+
T Consensus 505 ~nmvrpamqlAkKi~ 519 (629)
T KOG2300|consen 505 RNMVRPAMQLAKKIP 519 (629)
T ss_pred HhccchHHHHHhcCC
Confidence 999988888655443
No 170
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=3.6e-06 Score=91.13 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc---CcHHHHHHHHH
Q psy3224 842 RESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESEN---NEYERARRLLA 918 (1278)
Q Consensus 842 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~---g~~~~A~~~l~ 918 (1278)
.+..+.-++.-+..+|++.+-|..+|.+|..+|++..|...|.+++++.|++++++..++.++..+ ....++..+|+
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 455677788889999999999999999999999999999999999999999999999999987654 34568889999
Q ss_pred HHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Q psy3224 919 KARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTP 967 (1278)
Q Consensus 919 ~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 967 (1278)
+++ ..+|.+..+...++..++..|++.+|...++.++...|..
T Consensus 218 ~al------~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QAL------ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHH------hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 988 8899999999999999999999999999999999887753
No 171
>PRK11906 transcriptional regulator; Provisional
Probab=98.45 E-value=5.7e-06 Score=94.89 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=107.1
Q ss_pred CHHHHHHHHHHHH---HhCCChHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy3224 982 NLERALQLLDEAI---KVFPDFAKLWMMKGQIEEQK---------NLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRK 1049 (1278)
Q Consensus 982 ~~~~A~~~l~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g 1049 (1278)
..+.|..+|.+++ .++|+...+|..++.+++.. ....+|.....++++++|.++.++..+|.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3456777778888 77777777777777776433 24556777888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH--HHHhccCCCCChhHHHHHHH
Q psy3224 1050 MLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWA--EAIFLEPRPQRKTKSVDALK 1127 (1278)
Q Consensus 1050 ~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~--~~~~~~~~~~~~~~A~~~l~ 1127 (1278)
+++.|..+|++|+.++|+.+.+|+..+.++...|+.++|.+.+++++++.|.-..+-. ..+..|. ....+.|+..|-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 431 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhHHHHh
Confidence 8888888888888888888888888888888888888888888888888887543222 2222332 334555666665
Q ss_pred Hh
Q psy3224 1128 KC 1129 (1278)
Q Consensus 1128 k~ 1129 (1278)
+-
T Consensus 432 ~~ 433 (458)
T PRK11906 432 KE 433 (458)
T ss_pred hc
Confidence 54
No 172
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.44 E-value=8.1e-07 Score=76.92 Aligned_cols=66 Identities=24% Similarity=0.229 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q psy3224 1001 AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRK-MLIKARSVLEKGRLRNP 1066 (1278)
Q Consensus 1001 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g-~~~~A~~~l~kal~~~p 1066 (1278)
+.+|..+|.++...|++++|+..|.++++.+|+++.+|..+|.++...| ++.+|+..|+++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 3444445555555555555555555555555555555555555555554 34555555555554444
No 173
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.44 E-value=5.7e-07 Score=76.80 Aligned_cols=65 Identities=18% Similarity=0.356 Sum_probs=60.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc
Q psy3224 1182 LAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHG 1246 (1278)
Q Consensus 1182 ~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~ 1246 (1278)
+.+|..++..|++++|+..|+++++.+|+++++|..++.++...|++++|..+++++++..|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999875
No 174
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.42 E-value=9.2e-06 Score=82.02 Aligned_cols=117 Identities=19% Similarity=0.202 Sum_probs=91.1
Q ss_pred hcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcHH
Q psy3224 838 NHGTRESLETLLQKAVAHCPKS---EVLWLMGAKSKWLAGDVPAARGILSLAFQANPNS---EEIWLAAVKLESENNEYE 911 (1278)
Q Consensus 838 ~~g~~~~A~~~~~~al~~~P~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~l~~~~g~~~ 911 (1278)
..++...+...++..++.+|+. ..+.+.+|.++...|++++|...|+.++...|+. ..+.+.++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4677777888888888888887 4677888888889999999999999998887654 346677888888888888
Q ss_pred HHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 912 RARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKAR 961 (1278)
Q Consensus 912 ~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al 961 (1278)
+|+..++.. ...+..+..+..+|.++...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 888888663 4455556677778888888888888888887763
No 175
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=1.5e-05 Score=80.85 Aligned_cols=202 Identities=14% Similarity=0.066 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~ 1047 (1278)
.+++..|.+|-..|-+.-|+.-|.+++.+.|+-+.++..+|..+...|+++.|.+.|...++++|.+-.+..+.|..+.-
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY 145 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 145 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence 44555567777788888888889999999999999999999988899999999999999999999888888888887888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHH
Q psy3224 1048 RKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALK 1127 (1278)
Q Consensus 1048 ~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~ 1127 (1278)
-|++.-|..-+.+..+.+|++|.--+++...+.+. +..+|..-+.+-.+...+.-.-|......+.+. .-+.+.+.+.
T Consensus 146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~-dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgki-S~e~l~~~~~ 223 (297)
T COG4785 146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL-DPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKI-SEETLMERLK 223 (297)
T ss_pred cCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC-CHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhc-cHHHHHHHHH
Confidence 88999999998888888998885433444344433 445555444333333322223333222121111 1111112111
Q ss_pred HhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy3224 1128 KCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKI 1207 (1278)
Q Consensus 1128 k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~ 1207 (1278)
....+.. .+.+. =.+.++.+|..+...|+.+.|...|+-++..
T Consensus 224 a~a~~n~--------~~Ae~-----------------------------LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 224 ADATDNT--------SLAEH-----------------------------LTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hhccchH--------HHHHH-----------------------------HHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 1111111 00000 0238899999999999999999999999975
Q ss_pred C
Q psy3224 1208 D 1208 (1278)
Q Consensus 1208 ~ 1208 (1278)
+
T Consensus 267 n 267 (297)
T COG4785 267 N 267 (297)
T ss_pred h
Confidence 3
No 176
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.42 E-value=8e-06 Score=85.14 Aligned_cols=116 Identities=20% Similarity=0.166 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF---AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLAN 1043 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 1043 (1278)
...++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+.+|.+++...|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4677888888888899999999999888876653 4688888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Q psy3224 1044 LEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNA 1102 (1278)
Q Consensus 1044 l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~ 1102 (1278)
++...|+...+...++.++. .+.+|.+++++++...|++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchh
Confidence 88888887776666555532 2567788888888888775
No 177
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.40 E-value=4.9e-06 Score=93.73 Aligned_cols=134 Identities=20% Similarity=0.338 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHH
Q psy3224 862 LWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESE-NNEYERARRLLAKARAQAGAFQANPNSEEIWLAA 940 (1278)
Q Consensus 862 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~-~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~l 940 (1278)
+|+.+..+..+.+..+.|+.+|.+|++..+-+..+|...|.++.. .++.+.|..+|+.++ +..|.+...|..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~gl------k~f~~~~~~~~~Y 76 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGL------KKFPSDPDFWLEY 76 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHH------HHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH------HHCCCCHHHHHHH
Confidence 344444444444445555555555543333344555555555444 233333555555554 4445555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH
Q psy3224 941 VKLESENNEYERARRLLAKARASAPTP----RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFA 1001 (1278)
Q Consensus 941 a~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 1001 (1278)
+..+...++.+.|+.+|++++...+.. .+|..+..+....|+.+....+.+++.+..|...
T Consensus 77 ~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 77 LDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 555555555666666666665554443 3666666666666666666666666666666533
No 178
>KOG3081|consensus
Probab=98.39 E-value=0.00022 Score=75.19 Aligned_cols=127 Identities=13% Similarity=0.100 Sum_probs=78.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC
Q psy3224 942 KLESENNEYERARRLLAKARASAPTP------RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN 1015 (1278)
Q Consensus 942 ~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 1015 (1278)
.++.+..+++-|...++++.+.+.+. ..|..++ ...+.+..|.-+|+..-...|-.+.+....+.+.+.++
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la---~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLA---TGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh---ccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhc
Confidence 33344455555555555555444331 2222222 22345677777777777766666777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHH
Q psy3224 1016 LLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKAR-SVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 1016 ~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~-~~l~kal~~~p~~~~~ 1071 (1278)
++++|..+++.++..++++++++.++..+-...|...++. ..+.+....+|.++.+
T Consensus 222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 7777777777777777777777777777777777665544 3455555566666544
No 179
>KOG1941|consensus
Probab=98.36 E-value=0.00018 Score=78.36 Aligned_cols=52 Identities=10% Similarity=0.060 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCCHHHHH
Q psy3224 749 WMEDAESCANQGAYECARAIYAQALATFPSKKSIWL---RAAYFEKNHGTRESLE 800 (1278)
Q Consensus 749 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~---~la~~~~~~g~~~~A~ 800 (1278)
.+..|--+....++++|+..+.+.+..-.+...-+. .++.+....|.+++++
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL 63 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEML 63 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHH
Confidence 344555566777888888888888776544333222 2345555666666543
No 180
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.35 E-value=8.7e-06 Score=84.54 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 950 YERARRLLAKARASAPT---PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF---AKLWMMKGQIEEQKNLLDKAHDT 1023 (1278)
Q Consensus 950 ~~~A~~~l~~al~~~p~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~ 1023 (1278)
+..+...+...++..+. ...|+.+|.++...|++++|+..|.+++...|+. +.+|..+|.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444555444433332 4666777777777777777777777777776542 34677777777777777777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHH
Q psy3224 1024 FSQAIKKCPHSVPLWIMLANLEE 1046 (1278)
Q Consensus 1024 ~~~al~~~p~~~~~~~~la~l~~ 1046 (1278)
|++++...|.....+..++.++.
T Consensus 95 ~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHhCcCcHHHHHHHHHHHH
Confidence 77777777777777777777776
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.35 E-value=9.9e-06 Score=98.29 Aligned_cols=122 Identities=16% Similarity=0.101 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Q psy3224 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN--------LLDKAHDTFSQAIKK--CPHSVPLWIMLANLEERRKML 1051 (1278)
Q Consensus 982 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~al~~--~p~~~~~~~~la~l~~~~g~~ 1051 (1278)
....|+.+|+++++.+|++..+|..++.++.... +...+.....+++.. +|.++.++..++......|++
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 3556666677777777776666666665553321 233445555555443 566667777777777777888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Q psy3224 1052 IKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGI 1104 (1278)
Q Consensus 1052 ~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~ 1104 (1278)
++|...|++++.++| +...|..++.++...|+.++|.+.|++++.++|.++.
T Consensus 437 ~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 437 DEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 888888888888887 4667777888888888888888888888888887663
No 182
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.34 E-value=2.1e-06 Score=73.30 Aligned_cols=62 Identities=23% Similarity=0.385 Sum_probs=35.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy3224 973 SAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS 1034 (1278)
Q Consensus 973 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 1034 (1278)
+|..++..|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++.+|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45555555566666666666666666656666666666666666666666666665555554
No 183
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.33 E-value=7.6e-05 Score=79.29 Aligned_cols=197 Identities=16% Similarity=0.109 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHH
Q psy3224 1001 AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS---VPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL-WLAAI 1076 (1278)
Q Consensus 1001 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~-~~~l~ 1076 (1278)
+..|+.-|...++.|++++|...|+.+....|.+ ..+.+.++..+.+.++++.|+..+++.+.+.|.++.+ |..+.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3444444444555555555555555555554443 3344444555555555555555555555555554432 11111
Q ss_pred H--HHH--------HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhh
Q psy3224 1077 R--VEI--------RAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCE 1146 (1278)
Q Consensus 1077 ~--~~~--------~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~ 1146 (1278)
. .+. ...-..+|..-|+..++..|++..+-. |..-+..+. ..+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~d--------------A~~~i~~~~---------d~L---- 166 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPD--------------AKARIVKLN---------DAL---- 166 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhh--------------HHHHHHHHH---------HHH----
Confidence 1 111 011234577777888888888754322 111111110 000
Q ss_pred cccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh---hHHHHHHHHHH
Q psy3224 1147 NKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLG---DAWAYFYKFEI 1223 (1278)
Q Consensus 1147 ~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~---d~~~~l~~~~~ 1223 (1278)
..--..+|..|.+.|.+..|+..++.+++..|+-. +++..+...+.
T Consensus 167 -------------------------------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~ 215 (254)
T COG4105 167 -------------------------------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYY 215 (254)
T ss_pred -------------------------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 00345779999999999999999999999877754 58888899999
Q ss_pred HhCCHHHHHHHHHHHHHhCCCCcchhhhhhhccc
Q psy3224 1224 INGTEETQAEVKKRCLAAEPKHGENWCRVAKNVS 1257 (1278)
Q Consensus 1224 ~~G~~~~A~~~l~ka~~~~P~~~~~w~~~~k~~~ 1257 (1278)
.+|-.++|...-+-+-...|+++ |....+...
T Consensus 216 ~lgl~~~a~~~~~vl~~N~p~s~--~~~~~~~~~ 247 (254)
T COG4105 216 ALGLTDEAKKTAKVLGANYPDSQ--WYKDAYRLL 247 (254)
T ss_pred HhCChHHHHHHHHHHHhcCCCCc--chhhhhhcc
Confidence 99999999877655555566666 777665443
No 184
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.33 E-value=1.2e-05 Score=93.16 Aligned_cols=110 Identities=18% Similarity=0.173 Sum_probs=55.8
Q ss_pred cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLE 1059 (1278)
Q Consensus 980 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~ 1059 (1278)
.++++.|+.+|++..+.+|+ +...++.++...++..+|+.++.++++..|.+..++...+.++...++++.|+.+.+
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk 258 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAK 258 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34444444444444444433 233344444444555555555555555555555555555555555555555555555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 1060 KGRLRNPNCAELWLAAIRVEIRAGLKDIANTMM 1092 (1278)
Q Consensus 1060 kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 1092 (1278)
+++...|++...|..++.+|...|+++.|+..+
T Consensus 259 ~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 259 KAVELSPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred HHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 555555555555555555555555555555433
No 185
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.32 E-value=1.6e-05 Score=87.89 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=68.2
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q psy3224 968 RVMIQSAKLE-WCLDNLERALQLLDEAIKVFPDF---AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS---VPLWIM 1040 (1278)
Q Consensus 968 ~~~~~la~~~-~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 1040 (1278)
..++..+..+ ...|++++|+..|+..++.+|++ +.+++.+|.+|...|++++|+..|.++++..|++ +.+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4444444433 44567777777777777777765 4667777777777777777777777777666653 556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 1041 LANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 1041 la~l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
+|.++...|++++|+..|+++++..|++...
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 6667767777777777777777777766543
No 186
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=6.1e-05 Score=76.45 Aligned_cols=191 Identities=13% Similarity=0.032 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHH
Q psy3224 861 VLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAA 940 (1278)
Q Consensus 861 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~l 940 (1278)
.+++..|..|-..|-..-|+--|.+++.+.|+-+.++..+|..+...|+++.|.+.|...+ ..+|...-+..+.
T Consensus 66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~------ELDp~y~Ya~lNR 139 (297)
T COG4785 66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL------ELDPTYNYAHLNR 139 (297)
T ss_pred HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh------ccCCcchHHHhcc
Confidence 4556666677777777778888888888888888888888887777777777777777776 6777777777776
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHcCCHHHHHHHH-HHHHHhCCChHHHHHHHHHHHHHcCC
Q psy3224 941 VKLESENNEYERARRLLAKARASAPTP---RVMIQSAKLEWCLDNLERALQLL-DEAIKVFPDFAKLWMMKGQIEEQKNL 1016 (1278)
Q Consensus 941 a~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~la~~~~~~g~~~~A~~~l-~~al~~~p~~~~~~~~la~~~~~~g~ 1016 (1278)
|..+.--|++.-|..-+.+..+.+|+. .+|+.+. ...-++.+|..-+ +++-..+.+ ...|...... .|+
T Consensus 140 gi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~~y---Lgk 212 (297)
T COG4785 140 GIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKE-QWGWNIVEFY---LGK 212 (297)
T ss_pred ceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHh-hhhHHHHHHH---Hhh
Confidence 666667777777777777777776653 3343322 2233555555444 333333222 1122211111 111
Q ss_pred HHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 1017 LDKAHDTFSQAIKKCPHS-------VPLWIMLANLEERRKMLIKARSVLEKGRLRN 1065 (1278)
Q Consensus 1017 ~~~A~~~~~~al~~~p~~-------~~~~~~la~l~~~~g~~~~A~~~l~kal~~~ 1065 (1278)
.. -...++++..-..++ .+.++.+|..+...|+.++|..+|+-++..+
T Consensus 213 iS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 213 IS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred cc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 11 112223332222222 3455666666666777777777776666544
No 187
>KOG0543|consensus
Probab=98.30 E-value=9.6e-06 Score=90.79 Aligned_cols=99 Identities=10% Similarity=0.012 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 1002 KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIR 1081 (1278)
Q Consensus 1002 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~ 1081 (1278)
.++++++.++.+++.+..|+....++|...|+|..+++..|.++...|+++.|+..|++++++.|+|..+...+..+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 46777888888888888888888888888888888888888888888888888888888888888888877777776655
Q ss_pred cCCHHH-HHHHHHHHHHHCC
Q psy3224 1082 AGLKDI-ANTMMAKALQECP 1100 (1278)
Q Consensus 1082 ~g~~~~-A~~~~~kal~~~P 1100 (1278)
...+.+ ..++|.+++...+
T Consensus 338 ~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 554443 3667777766554
No 188
>KOG0543|consensus
Probab=98.30 E-value=9.4e-06 Score=90.83 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~ 1047 (1278)
.++++++.++..++.+..|+...+++|...|+|..+++..|+++...|+++.|+..|+++++..|.|..+...++.+..+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred cCCHH-HHHHHHHHHHHhCC
Q psy3224 1048 RKMLI-KARSVLEKGRLRNP 1066 (1278)
Q Consensus 1048 ~g~~~-~A~~~l~kal~~~p 1066 (1278)
...+. +..+.|.+++...+
T Consensus 338 ~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHhhccc
Confidence 76655 44888888887654
No 189
>KOG1941|consensus
Probab=98.30 E-value=0.00019 Score=78.15 Aligned_cols=230 Identities=13% Similarity=0.037 Sum_probs=125.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHH
Q psy3224 869 SKWLAGDVPAARGILSLAFQANPNSEE---IWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLES 945 (1278)
Q Consensus 869 ~~~~~g~~~~A~~~l~~al~~~p~~~~---~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~ 945 (1278)
-++...++++|+....+.+..-.+... .+-.+......+|.+++++..--..+......+..---.+++..+++.+.
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555444332211 22223334444455554443332222211111222222344555666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHH
Q psy3224 946 ENNEYERARRLLAKARASAPT------PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF------AKLWMMKGQIEEQ 1013 (1278)
Q Consensus 946 ~~g~~~~A~~~l~~al~~~p~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~ 1013 (1278)
+.-++.+++.+-...+..... ..+...++..+..++.++++++.|+.+++...++ -.++..+|.++.+
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 666666666665555544321 2455556666666777777777777777653322 2556667777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHH
Q psy3224 1014 KNLLDKAHDTFSQAIKKCPHS----------VPLWIMLANLEERRKMLIKARSVLEKGRLRNP------NCAELWLAAIR 1077 (1278)
Q Consensus 1014 ~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p------~~~~~~~~l~~ 1077 (1278)
..++++|.-+..++.++.... ..+.+.++..+...|..-.|.+..+.+.++.- -.......++.
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 777777777766666554221 23445566666777777777777777766532 12233556667
Q ss_pred HHHHcCCHHHHHHHHHHHHHH
Q psy3224 1078 VEIRAGLKDIANTMMAKALQE 1098 (1278)
Q Consensus 1078 ~~~~~g~~~~A~~~~~kal~~ 1098 (1278)
+|...|+.+.|..-|+++...
T Consensus 255 IyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHhcccHhHHHHHHHHHHHH
Confidence 777777777777777776544
No 190
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.29 E-value=1.1e-05 Score=83.82 Aligned_cols=121 Identities=12% Similarity=0.056 Sum_probs=98.4
Q ss_pred CHHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHH
Q psy3224 982 NLERALQLLDEAIKVFPDF--AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS---VPLWIMLANLEERRKMLIKARS 1056 (1278)
Q Consensus 982 ~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~l~~~~g~~~~A~~ 1056 (1278)
.+..+...+...++..+.. ...|+.+|.++...|++++|...|.+++...|++ +.+|..+|.++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 4566666666666555544 6788999999999999999999999999887763 4589999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHHCCCc
Q psy3224 1057 VLEKGRLRNPNCAELWLAAIRVEI-------RAGLKD-------IANTMMAKALQECPNA 1102 (1278)
Q Consensus 1057 ~l~kal~~~p~~~~~~~~l~~~~~-------~~g~~~-------~A~~~~~kal~~~P~~ 1102 (1278)
.|++++.++|.....+..++.++. ..|+++ +|..++++++...|.+
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 999999999999998888888888 777766 5555555666666654
No 191
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=1.9e-05 Score=91.55 Aligned_cols=120 Identities=23% Similarity=0.282 Sum_probs=71.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHH
Q psy3224 939 AAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLD 1018 (1278)
Q Consensus 939 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 1018 (1278)
.+..++...++++.|+.+|++..+..|. +...++.++...++..+|+.++.++++..|.+..++...+.++...++++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 3444445555666666666666655554 33335555555566666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 1019 KAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEK 1060 (1278)
Q Consensus 1019 ~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~k 1060 (1278)
.|+.+.++++...|.+...|..|+.+|...|+++.|+..++.
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 666666666666666666666666666666666666655543
No 192
>PRK11906 transcriptional regulator; Provisional
Probab=98.28 E-value=3e-05 Score=89.10 Aligned_cols=113 Identities=17% Similarity=0.147 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKG 1061 (1278)
Q Consensus 982 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~ka 1061 (1278)
...+|.....++++++|.++.++..+|.+....++++.|...|++++.++|+.+.+|+..|.+....|+.++|+..++++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHH
Q psy3224 1062 RLRNPNCAELWLAA--IRVEIRAGLKDIANTMMAKA 1095 (1278)
Q Consensus 1062 l~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~ka 1095 (1278)
+.++|.-..+-... ...|+ ....++|+.+|-+-
T Consensus 399 lrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 433 (458)
T PRK11906 399 LQLEPRRRKAVVIKECVDMYV-PNPLKNNIKLYYKE 433 (458)
T ss_pred hccCchhhHHHHHHHHHHHHc-CCchhhhHHHHhhc
Confidence 77777544321111 11232 33455566655543
No 193
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.28 E-value=2.3e-06 Score=77.29 Aligned_cols=79 Identities=19% Similarity=0.185 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 981 DNLERALQLLDEAIKVFPD--FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVL 1058 (1278)
Q Consensus 981 g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l 1058 (1278)
|+++.|+.++++++...|. +...++.+|.++.+.|++++|..++++ .+.+|.+......+|.++..+|++++|+..|
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4455555555555555442 334444455555555555555555554 4444444444444455555555555555555
Q ss_pred HH
Q psy3224 1059 EK 1060 (1278)
Q Consensus 1059 ~k 1060 (1278)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 44
No 194
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.25 E-value=1.9e-05 Score=87.22 Aligned_cols=106 Identities=16% Similarity=0.071 Sum_probs=94.6
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q psy3224 1001 AKLWMMKGQIE-EQKNLLDKAHDTFSQAIKKCPHS---VPLWIMLANLEERRKMLIKARSVLEKGRLRNPNC---AELWL 1073 (1278)
Q Consensus 1001 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~---~~~~~ 1073 (1278)
...++..+..+ ...|++++|+..|+..++..|++ +.+++.+|.++...|++++|+..|++++...|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 46666666655 66799999999999999999998 5799999999999999999999999999998875 57888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Q psy3224 1074 AAIRVEIRAGLKDIANTMMAKALQECPNAGILW 1106 (1278)
Q Consensus 1074 ~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 1106 (1278)
.++.++...|++++|...|+++++.+|++..+-
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 999999999999999999999999999987543
No 195
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.23 E-value=3.9e-05 Score=93.18 Aligned_cols=151 Identities=16% Similarity=0.124 Sum_probs=96.9
Q ss_pred HHHhCCCcHHHHHHH--HHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhh
Q psy3224 852 AVAHCPKSEVLWLMG--AKSKWLAG---DVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGA 926 (1278)
Q Consensus 852 al~~~P~~~~~~~~l--a~~~~~~g---~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~ 926 (1278)
+....|.+..+|-.+ |..+...+ +...|+.+|+++++.+|++..+|-.++.++.....+.
T Consensus 329 ~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~--------------- 393 (517)
T PRK10153 329 LQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ--------------- 393 (517)
T ss_pred HhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC---------------
Confidence 334566776666544 44444433 4779999999999999999888888777664321111
Q ss_pred hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHH
Q psy3224 927 FQANPNSEEIWLAAVKLESENNEYERARRLLAKARAS--AP-TPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKL 1003 (1278)
Q Consensus 927 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 1003 (1278)
|. ...+...+.....+++.. .| .+.++..++..+...|++++|...+++++.++|+ ...
T Consensus 394 ----~~-------------~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a 455 (517)
T PRK10153 394 ----PL-------------DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLN 455 (517)
T ss_pred ----Cc-------------cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHH
Confidence 10 011233444444454443 22 3466666666666677777777777777777773 667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy3224 1004 WMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSV 1035 (1278)
Q Consensus 1004 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 1035 (1278)
|..+|.++...|++++|...|.+|+.++|.++
T Consensus 456 ~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 456 YVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 77777777777777777777777777777665
No 196
>PRK15331 chaperone protein SicA; Provisional
Probab=98.21 E-value=4.8e-05 Score=75.56 Aligned_cols=103 Identities=14% Similarity=-0.018 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~ 1047 (1278)
...+.+|.-++..|++++|..+|.-+...+|.++..|+.+|.++...+++++|+..|..+....++++...+..|.++..
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 45566666777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 1048 RKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 1048 ~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
.|+...|+..|+.++. .|.+..+
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred hCCHHHHHHHHHHHHh-CcchHHH
Confidence 8888888888888777 4554444
No 197
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.21 E-value=4.1e-06 Score=75.65 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 947 NNEYERARRLLAKARASAPT---PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDT 1023 (1278)
Q Consensus 947 ~g~~~~A~~~l~~al~~~p~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 1023 (1278)
+|+++.|+.+|++++...|. +..|+.+|.+++..|++++|+.++++ +...|.+....+.+|.++..+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57888888888888888772 46777788899999999999999988 778888888888889999999999999998
Q ss_pred HHHH
Q psy3224 1024 FSQA 1027 (1278)
Q Consensus 1024 ~~~a 1027 (1278)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8764
No 198
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.16 E-value=0.00066 Score=72.30 Aligned_cols=170 Identities=16% Similarity=0.170 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH---HHHHH
Q psy3224 934 EEIWLAAVKLESENNEYERARRLLAKARASAPT----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFA---KLWMM 1006 (1278)
Q Consensus 934 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~ 1006 (1278)
+..|+.-|...++.|++++|...|+.+....|. ..+.+.++..++..++++.|+..+++.+.++|.++ -+++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 445555555666666666666666666666653 46666666666667777777777777777666543 34444
Q ss_pred HHHHHHHcC--------CHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 1007 KGQIEEQKN--------LLDKAHDTFSQAIKKCPHSV-----------------PLWIMLANLEERRKMLIKARSVLEKG 1061 (1278)
Q Consensus 1007 la~~~~~~g--------~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~l~~~~g~~~~A~~~l~ka 1061 (1278)
.|.++...= -...|...|+..+...|++. ..=..+++.|.+.|.+..|+.-++.+
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 444443211 13345666666677777652 11224577888889999999999999
Q ss_pred HHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Q psy3224 1062 RLRNPNCA---ELWLAAIRVEIRAGLKDIANTMMAKALQECPNAG 1103 (1278)
Q Consensus 1062 l~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~ 1103 (1278)
++..|+.. +.+..+..++..+|-.++|...-.-.-...|+++
T Consensus 194 ~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 194 LENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 98877655 4566666788889988888876555555556665
No 199
>PRK15331 chaperone protein SicA; Provisional
Probab=98.14 E-value=2.6e-05 Score=77.40 Aligned_cols=110 Identities=12% Similarity=-0.084 Sum_probs=99.3
Q ss_pred hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy3224 996 VFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAA 1075 (1278)
Q Consensus 996 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l 1075 (1278)
+.++.-+..+.+|.-+...|++++|..+|+-....+|.++..|..||.++...+++++|+..|..+..+.+++|...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 34445677788888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Q psy3224 1076 IRVEIRAGLKDIANTMMAKALQECPNAGILW 1106 (1278)
Q Consensus 1076 ~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 1106 (1278)
+.++...|+.+.|+..|..++. .|.+..+.
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~ 141 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE-RTEDESLR 141 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh-CcchHHHH
Confidence 9999999999999999999998 45555443
No 200
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=98.11 E-value=0.076 Score=67.09 Aligned_cols=190 Identities=11% Similarity=0.088 Sum_probs=122.2
Q ss_pred hHHHHHHHHHH-hcCCCccchHhhHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--CHH----HHHHHHHHHHHcCCHH
Q psy3224 726 HTCQALIRAII-GYGVEQEDRKHTWMEDAESCA-NQGAYECARAIYAQALATFPS--KKS----IWLRAAYFEKNHGTRE 797 (1278)
Q Consensus 726 ~~A~~i~~~~l-~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~P~--~~~----~~~~la~~~~~~g~~~ 797 (1278)
.+|..+++.++ ...+.+.....+.+.+|.++. ...+++.|..++++++..... -.+ ....++.++.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 45666677777 444444456788999999988 568999999999999887743 222 3445588888888777
Q ss_pred HHHHHHHHHHHhCCchH-HHHHhhcccchHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHhC--CCcHHHH----HHHHH
Q psy3224 798 SLETLLQKAVAHCPKSE-VLWLMGAKSNKKSIWLRA--AYFEKNHGTRESLETLLQKAVAHC--PKSEVLW----LMGAK 868 (1278)
Q Consensus 798 ~A~~~l~~al~~~p~~~-~~~~~~~~~~~~~~~l~~--a~l~~~~g~~~~A~~~~~~al~~~--P~~~~~~----~~la~ 868 (1278)
|...+++.++...... ..|. ..+++ +.+....+++..|+..++.+.... +.++.+. +.-+.
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~---------~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~ 187 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWY---------YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEAL 187 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHH---------HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHH
Confidence 9999999888765521 1121 01111 222223379999999999888765 3444332 23344
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHhhh
Q psy3224 869 SKWLAGDVPAARGILSLAFQANP----------NSEEIWLAAVKL--ESENNEYERARRLLAKARAQAG 925 (1278)
Q Consensus 869 ~~~~~g~~~~A~~~l~~al~~~p----------~~~~~~~~la~l--~~~~g~~~~A~~~l~~al~~~~ 925 (1278)
++...+..+.+.+.++++..... ....+|..+.++ ....|++..+...+++.-....
T Consensus 188 l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~ 256 (608)
T PF10345_consen 188 LHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLD 256 (608)
T ss_pred HHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 55567777888888887743221 124566665555 4467887788777666654433
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.10 E-value=0.00054 Score=68.15 Aligned_cols=134 Identities=13% Similarity=0.130 Sum_probs=69.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 883 LSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARA 962 (1278)
Q Consensus 883 l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 962 (1278)
..+.+...|. ..-.+.++......|++.+|...|++++ -...-.++..++.+++.....+++..|...+++..+
T Consensus 79 a~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qal-----sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e 152 (251)
T COG4700 79 ATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQAL-----SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME 152 (251)
T ss_pred HHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHh-----ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence 3333344442 3334455555555555555555555554 133444555555555555555555555555555555
Q ss_pred hCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 963 SAPT---PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDT 1023 (1278)
Q Consensus 963 ~~p~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 1023 (1278)
.+|. +...+.+++.+...|.+..|...|+.++...|. +.....++.++..+|+..+|..-
T Consensus 153 ~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq 215 (251)
T COG4700 153 YNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQ 215 (251)
T ss_pred cCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHH
Confidence 5542 344445555555555555555555555555554 44555555555555554444433
No 202
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.09 E-value=0.00052 Score=68.28 Aligned_cols=148 Identities=18% Similarity=0.113 Sum_probs=114.0
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 949 EYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIK-VFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQA 1027 (1278)
Q Consensus 949 ~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 1027 (1278)
+.+....-..+.+...|+..-.+.++..+...|++.+|...|++++. .+.+++.+++.+++..+..+++..|...+++.
T Consensus 71 dP~R~~Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 71 DPERHLREATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred ChhHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 44455555555666677777777888888888888888888888876 66778888888888888888888888888888
Q ss_pred HHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1028 IKKCPH--SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQ 1097 (1278)
Q Consensus 1028 l~~~p~--~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~ 1097 (1278)
.+.+|. ++.....+++.+...|.+.+|...|+.++...|+.. ....++.++..+|+..+|..-+....+
T Consensus 151 ~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 151 MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 888775 466777888888888888888888888888887644 446777788888877776665554443
No 203
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.08 E-value=8.3e-06 Score=70.28 Aligned_cols=60 Identities=18% Similarity=0.243 Sum_probs=27.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy3224 1014 KNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWL 1073 (1278)
Q Consensus 1014 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~ 1073 (1278)
.|++++|+..|++++..+|++..+++.++.++...|++++|..++++++..+|+++.++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 63 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQ 63 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence 344444444444444444444444444444444444444444444444444444444433
No 204
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.07 E-value=7.8e-05 Score=71.45 Aligned_cols=93 Identities=25% Similarity=0.207 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---hHHHHHHHH
Q psy3224 936 IWLAAVKLESENNEYERARRLLAKARASAPT----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPD---FAKLWMMKG 1008 (1278)
Q Consensus 936 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~la 1008 (1278)
+++.++.++-..|+.++|+.+|++++....+ ..+++.++..+...|++++|+.++++++..+|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 3445555555556666666666665554322 245555555566666666666666666655555 455555555
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q psy3224 1009 QIEEQKNLLDKAHDTFSQAI 1028 (1278)
Q Consensus 1009 ~~~~~~g~~~~A~~~~~~al 1028 (1278)
.++...|++++|+..+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 55555566666555555444
No 205
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.06 E-value=1.2e-05 Score=69.19 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=40.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 979 CLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLAN 1043 (1278)
Q Consensus 979 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 1043 (1278)
..|++++|+..|++++..+|++..+++.++.++...|++++|..++.+++..+|+++.++..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 45666666666666666666666666666666666666666666666666666665555555443
No 206
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.04 E-value=9.5e-05 Score=70.85 Aligned_cols=96 Identities=17% Similarity=0.068 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF---AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH---SVPLWIML 1041 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 1041 (1278)
.+++..+.++-..|+.++|+.+|++++...... ..+++.+|..+...|++++|..++++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 345666666666777777777777776654322 456666666666677777777777766666666 55555666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1042 ANLEERRKMLIKARSVLEKGRL 1063 (1278)
Q Consensus 1042 a~l~~~~g~~~~A~~~l~kal~ 1063 (1278)
+.++...|+.++|+.++-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666655543
No 207
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.03 E-value=9.9e-05 Score=79.25 Aligned_cols=102 Identities=18% Similarity=0.148 Sum_probs=67.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q psy3224 970 MIQSAKLEWCLDNLERALQLLDEAIKVFPDF---AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS---VPLWIMLAN 1043 (1278)
Q Consensus 970 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 1043 (1278)
.+..+.-++..|+|..|...|...++.+|++ +.++++||.+++.+|+++.|...|..+++..|++ ++.++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 3444444556666777777777777766655 4667777777777777777777777777666554 566667777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 1044 LEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 1044 l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
+...+|+.++|...|+++++..|+.+.+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 7777777777777777777777766554
No 208
>KOG0985|consensus
Probab=97.96 E-value=0.12 Score=63.94 Aligned_cols=256 Identities=16% Similarity=0.117 Sum_probs=155.3
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy3224 840 GTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAK 919 (1278)
Q Consensus 840 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~ 919 (1278)
++.++|.+..+++ +.+.+|..+|......|...+|++.|-++ +++..|.....+..+.|.|++-..++..
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4444455444433 44677888888888888888888777665 4566777777777788888888777777
Q ss_pred HHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 920 ARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPD 999 (1278)
Q Consensus 920 al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 999 (1278)
+.+.. ..| .+-..+...|.+.++..+-...+ ..|+..-.-..|.-++..+.|+.|.-+|..
T Consensus 1159 aRkk~----~E~---~id~eLi~AyAkt~rl~elE~fi-----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~------- 1219 (1666)
T KOG0985|consen 1159 ARKKV----REP---YIDSELIFAYAKTNRLTELEEFI-----AGPNVANIQQVGDRCFEEKMYEAAKLLYSN------- 1219 (1666)
T ss_pred HHHhh----cCc---cchHHHHHHHHHhchHHHHHHHh-----cCCCchhHHHHhHHHhhhhhhHHHHHHHHH-------
Confidence 76331 112 12223333444555554443332 234544445566666777777777766643
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Q psy3224 1000 FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNP-NCAELWLAAIRV 1078 (1278)
Q Consensus 1000 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p-~~~~~~~~l~~~ 1078 (1278)
..-|..++..+...|+|..|.+.-++| ++...|..........+.+.-|.- .-++- -+.+-+-.+...
T Consensus 1220 -vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQi-----CGL~iivhadeLeeli~~ 1288 (1666)
T KOG0985|consen 1220 -VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQI-----CGLNIIVHADELEELIEY 1288 (1666)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHh-----cCceEEEehHhHHHHHHH
Confidence 345667777777888888888766665 456677777666655555443321 11111 122334667778
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHh---ccCcchh
Q psy3224 1079 EIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKC---EHDPHVL 1136 (1278)
Q Consensus 1079 ~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~---~~~p~~~ 1136 (1278)
|...|-+++-+.+++.++-+.--+--.+..++.+|.+- +.++-.+.++-. .+-|.+.
T Consensus 1289 Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKvi 1348 (1666)
T KOG0985|consen 1289 YQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVI 1348 (1666)
T ss_pred HHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHH
Confidence 88888888888888888887776766777777666432 233333333333 4445533
No 209
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.94 E-value=4.3e-05 Score=66.88 Aligned_cols=63 Identities=21% Similarity=0.363 Sum_probs=33.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy3224 976 LEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLW 1038 (1278)
Q Consensus 976 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 1038 (1278)
++...+++++|+.++++++..+|+++.+|..+|.++...|++.+|...|+++++.+|+++.+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 444555555555555555555555555555555555555555555555555555555544433
No 210
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.92 E-value=0.00022 Score=81.97 Aligned_cols=105 Identities=21% Similarity=0.242 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHhc-------CHHHHHHHHHHHH
Q psy3224 595 KRRVYRKALEHIPNSVRLWKAAVELE----DPEDARILLSRAVECCPTSVELWLALARLE-------TYENARKVLNKAR 663 (1278)
Q Consensus 595 A~~ll~rAle~~P~s~~Lw~al~~l~----~~e~A~~~l~kal~~~P~~~~~w~~la~l~-------~~~~A~~~l~~al 663 (1278)
...+|++|++.+|.++.||+.|++.+ +.+...+.+++++..+|+++.+|..|.... .++..+.+|.+++
T Consensus 50 klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 50 KLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 34455555555555555555544443 444444555555555555555555544321 2444444444444
Q ss_pred HhCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 664 ENIPT------------------DRQIWTTAAKLEEAHGNNAMVDKIIDRALSS 699 (1278)
Q Consensus 664 ~~~p~------------------~~~~~~~la~~~~~~g~~~~A~~il~~al~~ 699 (1278)
..... -..+...++.+..+.|..+.|.++++..++.
T Consensus 130 ~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 130 RALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred HHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 32211 1134455566666777777777777766664
No 211
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.90 E-value=5.5e-05 Score=66.14 Aligned_cols=63 Identities=21% Similarity=0.203 Sum_probs=37.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 1009 QIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 1009 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
.+|...+++++|+.++++++..+|+++..|..+|.++...|++.+|+..|+++++..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 445555666666666666666666666666666666666666666666666666666655544
No 212
>KOG2471|consensus
Probab=97.90 E-value=0.0031 Score=71.55 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHH--------------
Q psy3224 1003 LWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLE-----ERRKMLIKARSVLEKGRL-------------- 1063 (1278)
Q Consensus 1003 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~-----~~~g~~~~A~~~l~kal~-------------- 1063 (1278)
++...+.+....|+.-.|...-.+.++. |+-..++..+|.+| ..+.+..+|+..+.--+-
T Consensus 511 i~A~~ayV~L~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAaEAL~lldr~seA~~HL~p~~~~~~~f~~~~n~~Df 589 (696)
T KOG2471|consen 511 IFANMAYVELELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAAEALCLLDRPSEAGAHLSPYLLGQDDFKLPYNQEDF 589 (696)
T ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHcCChhhhhhccChhhcCCcccccccchhhh
Confidence 4455566677889999999988888764 44455666665555 456777777766543110
Q ss_pred ---------hCC----------CCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHhccCCCC
Q psy3224 1064 ---------RNP----------NCA-----ELWLAAIRVEIRAGLKDIANTMMAKALQECP--NAGILWAEAIFLEPRPQ 1117 (1278)
Q Consensus 1064 ---------~~p----------~~~-----~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P--~~~~~~~~~~~~~~~~~ 1117 (1278)
++| ..+ .+.++++..+.-.|++++|..++..+...-| .++.+......+....|
T Consensus 590 ~~~~~~~e~l~~s~~r~~q~~~~sv~~Ar~v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G 669 (696)
T KOG2471|consen 590 DQWWKHTETLDPSTGRTRQSVFLSVEEARGVLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLG 669 (696)
T ss_pred hhhhccccccCCcCCCCcccccCCHHHHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcC
Confidence 011 111 2567888899999999999999999988877 45566665666667889
Q ss_pred ChhHHHHHHHHhccCcc
Q psy3224 1118 RKTKSVDALKKCEHDPH 1134 (1278)
Q Consensus 1118 ~~~~A~~~l~k~~~~p~ 1134 (1278)
+...|...++++..-|.
T Consensus 670 ~~q~al~~lk~~~~~~~ 686 (696)
T KOG2471|consen 670 RSQDALARLKQCTHVSF 686 (696)
T ss_pred CCcchHHHHHhcccccc
Confidence 99999999998865554
No 213
>KOG4648|consensus
Probab=97.89 E-value=1.3e-05 Score=86.18 Aligned_cols=238 Identities=13% Similarity=0.045 Sum_probs=147.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHH
Q psy3224 749 WMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSI 828 (1278)
Q Consensus 749 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~ 828 (1278)
.-..|+.|+++|.|++|+.+|.+++..+|.|+..+.+.+..|.+...+..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~------------------------------ 149 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQ------------------------------ 149 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHH------------------------------
Confidence 44567889999999999999999999999999988888888888777665
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q psy3224 829 WLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENN 908 (1278)
Q Consensus 829 ~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g 908 (1278)
|..-++.|+.++.....+|...+..-..+|...+|.+-++.++.+.|++.++--.++.+..
T Consensus 150 ----------------AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S--- 210 (536)
T KOG4648|consen 150 ----------------AEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS--- 210 (536)
T ss_pred ----------------HHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc---
Confidence 4444555555555566778888888888899999999999999999987777666655433
Q ss_pred cHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 909 EYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQ 988 (1278)
Q Consensus 909 ~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~ 988 (1278)
+.++ .+..+ ..|. +-.|..-..+++.. -.-|..+...|.++.++.
T Consensus 211 -l~E~-~I~~K---------sT~G-----------------~~~A~Q~~~Q~l~~-------K~~G~~Fsk~~~~~~~i~ 255 (536)
T KOG4648|consen 211 -LRER-KIATK---------STPG-----------------FTPARQGMIQILPI-------KKPGYKFSKKAMRSVPVV 255 (536)
T ss_pred -hHhh-hHHhh---------cCCC-----------------CCccccchhhhccc-------cCcchhhhhhhcccccee
Confidence 1111 11111 1111 11122222222211 011333444556666666
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy3224 989 LLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNC 1068 (1278)
Q Consensus 989 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~ 1068 (1278)
++-+-+....++..+-.. +..+.+..+++.++.-.-+++...|........-+...--.|...++...++.++.+.|.+
T Consensus 256 ~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~ 334 (536)
T KOG4648|consen 256 DVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAV 334 (536)
T ss_pred EeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeecccc
Confidence 665555544444333333 4445555666666666666665555544444444444445566677777788888777765
Q ss_pred HHH
Q psy3224 1069 AEL 1071 (1278)
Q Consensus 1069 ~~~ 1071 (1278)
...
T Consensus 335 ~~~ 337 (536)
T KOG4648|consen 335 ETP 337 (536)
T ss_pred ccc
Confidence 543
No 214
>KOG4234|consensus
Probab=97.89 E-value=0.00016 Score=72.52 Aligned_cols=100 Identities=19% Similarity=0.090 Sum_probs=52.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy3224 978 WCLDNLERALQLLDEAIKVFPDF-----AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLI 1052 (1278)
Q Consensus 978 ~~~g~~~~A~~~l~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~ 1052 (1278)
+..|+|++|..-|..||..+|.. ..+|.+.|.++++++.++.|+....++|+++|.+..++...|.+|.+..+++
T Consensus 106 F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 106 FKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE 185 (271)
T ss_pred hhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence 34444444444444444444432 2344445555555555555555555555555555555555555555555566
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 1053 KARSVLEKGRLRNPNCAELWLAAIR 1077 (1278)
Q Consensus 1053 ~A~~~l~kal~~~p~~~~~~~~l~~ 1077 (1278)
+|+.-|.+.+..+|....+.-..++
T Consensus 186 ealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 186 EALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHHHHHHhCcchHHHHHHHHh
Confidence 6666666666666555544444443
No 215
>KOG0985|consensus
Probab=97.86 E-value=0.17 Score=62.66 Aligned_cols=167 Identities=14% Similarity=0.145 Sum_probs=106.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHH
Q psy3224 1047 RRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDAL 1126 (1278)
Q Consensus 1047 ~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l 1126 (1278)
..++.+.|.++-+++ +.+.+|..++....+.|...+|++.|-++ +++..|...+....+.|.+++-+..|
T Consensus 1087 ~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 455666666665554 45678888888888888888888877554 56667777788888888888877777
Q ss_pred HHh---ccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy3224 1127 KKC---EHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNR 1203 (1278)
Q Consensus 1127 ~k~---~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~k 1203 (1278)
..+ ...|.+...+-.++ + ..++..+.+ .+-.-|+.+ -+..+|.-++..+.|+.|.-.|..
T Consensus 1157 ~MaRkk~~E~~id~eLi~Ay---A------------kt~rl~elE-~fi~gpN~A-~i~~vGdrcf~~~~y~aAkl~y~~ 1219 (1666)
T KOG0985|consen 1157 LMARKKVREPYIDSELIFAY---A------------KTNRLTELE-EFIAGPNVA-NIQQVGDRCFEEKMYEAAKLLYSN 1219 (1666)
T ss_pred HHHHHhhcCccchHHHHHHH---H------------HhchHHHHH-HHhcCCCch-hHHHHhHHHhhhhhhHHHHHHHHH
Confidence 666 23444222211111 1 001111111 111223333 346778888889999999888764
Q ss_pred HHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchhhhhh
Q psy3224 1204 TVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCRVA 1253 (1278)
Q Consensus 1204 al~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w~~~~ 1253 (1278)
+ .-|..++..+..+|+++.|.+..+|+ ++...|..+.
T Consensus 1220 v--------SN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1220 V--------SNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVC 1256 (1666)
T ss_pred h--------hhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHH
Confidence 4 35777888888889998888888777 5556666654
No 216
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.86 E-value=0.00029 Score=75.71 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=91.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---HHHHHHHHH
Q psy3224 937 WLAAVKLESENNEYERARRLLAKARASAPT----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF---AKLWMMKGQ 1009 (1278)
Q Consensus 937 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~ 1009 (1278)
.+..+.-++..|+|..|...|...++..|+ +.+++.+|.+++.+|+++.|...|..+++..|++ ++.++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 344444555889999999999999999996 6899999999999999999999999999988865 689999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy3224 1010 IEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041 (1278)
Q Consensus 1010 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 1041 (1278)
+...+|+.++|...|+++++..|....+-..-
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99999999999999999999999987655443
No 217
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.84 E-value=9.1e-05 Score=85.13 Aligned_cols=70 Identities=7% Similarity=0.125 Sum_probs=66.9
Q ss_pred hhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhH---HHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy3224 1172 KKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDA---WAYFYKFEIINGTEETQAEVKKRCLAA 1241 (1278)
Q Consensus 1172 ~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~---~~~l~~~~~~~G~~~~A~~~l~ka~~~ 1241 (1278)
...|+++..++++|.+|+..|+|++|+..|+++++++|++.++ |++++.+|..+|+.++|.+++++++++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3679999999999999999999999999999999999999965 999999999999999999999999997
No 218
>KOG4648|consensus
Probab=97.83 E-value=2.2e-05 Score=84.43 Aligned_cols=242 Identities=12% Similarity=-0.007 Sum_probs=141.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy3224 971 IQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKM 1050 (1278)
Q Consensus 971 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~ 1050 (1278)
-..|.-|+.+|.|++|+.+|.+++..+|.++..+.+.+..|++...|..|......++.++.....+|...+..-..+|+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 34566777888888888888888888888888888888888888888888888888888887777788888877788888
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhc
Q psy3224 1051 LIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCE 1130 (1278)
Q Consensus 1051 ~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~ 1130 (1278)
..+|.+-++.++.+.|++.++--.++.+- ...++.- +.+..|....+....+..+. .
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELkK~~a~i~----Sl~E~~I----~~KsT~G~~~A~Q~~~Q~l~---------------~ 237 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELKKSLARIN----SLRERKI----ATKSTPGFTPARQGMIQILP---------------I 237 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHHHHHHHhc----chHhhhH----HhhcCCCCCccccchhhhcc---------------c
Confidence 88888888888888888766543333322 1111110 11112221111111111110 0
Q ss_pred cCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy3224 1131 HDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPD 1210 (1278)
Q Consensus 1131 ~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 1210 (1278)
.++. +.+...+.+..+. .++-.-. ....++...-.. +..|.+..+++.|+.-..+++..+|.
T Consensus 238 K~~G------~~Fsk~~~~~~~i-----~~~~~~~------A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s 299 (536)
T KOG4648|consen 238 KKPG------YKFSKKAMRSVPV-----VDVVSPR------ATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPT 299 (536)
T ss_pred cCcc------hhhhhhhccccce-----eEeeccc------cccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCC
Confidence 1111 0111011000000 0000000 000001001111 44556667788888888888888877
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchhhhhh
Q psy3224 1211 LGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCRVA 1253 (1278)
Q Consensus 1211 ~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w~~~~ 1253 (1278)
.......-.....-.|...++...++-++.+.|.....-....
T Consensus 300 ~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~~~s 342 (536)
T KOG4648|consen 300 PMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKETET 342 (536)
T ss_pred cCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchhhhh
Confidence 6655544455555667778888888888888887655444443
No 219
>KOG4234|consensus
Probab=97.83 E-value=0.00022 Score=71.59 Aligned_cols=102 Identities=15% Similarity=0.061 Sum_probs=49.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy3224 1011 EEQKNLLDKAHDTFSQAIKKCPHSV-----PLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLK 1085 (1278)
Q Consensus 1011 ~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~ 1085 (1278)
++..|+|++|..-|..||..||..+ .+|.+.|.++.+++.++.|+....++++++|.+..++...+.+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 3444555555555555555554421 23333444445555555555555555555555544444445555555555
Q ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHhc
Q psy3224 1086 DIANTMMAKALQECPNAGILWAEAIFL 1112 (1278)
Q Consensus 1086 ~~A~~~~~kal~~~P~~~~~~~~~~~~ 1112 (1278)
++|+.-|++++...|....+....+.+
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 555555555555555544444333333
No 220
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.79 E-value=0.0006 Score=66.44 Aligned_cols=82 Identities=16% Similarity=0.223 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH---HHHHH
Q psy3224 934 EEIWLAAVKLESENNEYERARRLLAKARASAPT----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFA---KLWMM 1006 (1278)
Q Consensus 934 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~ 1006 (1278)
+..++.-|.-.++.|+|++|++.|+.+....|. ..+.+.++.+++..+++++|+..+++.++++|.++ -+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 445556666666777788887777777777764 46777777777777888888888888888777663 55666
Q ss_pred HHHHHHHcC
Q psy3224 1007 KGQIEEQKN 1015 (1278)
Q Consensus 1007 la~~~~~~g 1015 (1278)
.|.++..+.
T Consensus 90 ~gL~~~~~~ 98 (142)
T PF13512_consen 90 RGLSYYEQD 98 (142)
T ss_pred HHHHHHHHh
Confidence 666555543
No 221
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.76 E-value=0.002 Score=74.17 Aligned_cols=176 Identities=17% Similarity=0.149 Sum_probs=115.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHH
Q psy3224 767 AIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLE 846 (1278)
Q Consensus 767 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~ 846 (1278)
.-|++.+..+|+|..+|+.++.+....-...... .. ....-.+.-+
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~-----------~~-----------------------~~~a~~E~kl 51 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSS-----------KA-----------------------ERRALAERKL 51 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccc-----------hh-----------------------hHHHHHHHHH
Confidence 4578889999999999999988876554322100 00 0001122367
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHh
Q psy3224 847 TLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESE---NNEYERARRLLAKARAQ 923 (1278)
Q Consensus 847 ~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~---~g~~~~A~~~l~~al~~ 923 (1278)
.+|++|++.+|.+..+++.+..+.....+.++...-+++++..+|++..+|..+...... .-.+...+..|.+++..
T Consensus 52 silerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 52 SILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHH
Confidence 889999999999999999999999998899999999999999999999999988887654 23567777777777643
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 924 AGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVF 997 (1278)
Q Consensus 924 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 997 (1278)
........ ..........-..+ ..++..++.++...|..+.|+.+++-.++.+
T Consensus 132 L~~~~~~~---------------~~~~~~~~~~e~~~------l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 132 LSRRRSGR---------------MTSHPDLPELEEFM------LYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHhhccc---------------cccccchhhHHHHH------HHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 22111110 00000000000000 2455556666777777777777777777754
No 222
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.74 E-value=0.00074 Score=65.80 Aligned_cols=120 Identities=13% Similarity=0.063 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF---AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVP---LWIM 1040 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 1040 (1278)
+..++.-|.-....|+|.+|++.|+.+....|-. ..+.+.++.+|...+++++|+..+++.++++|.++. +++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4555555555566666666666666666665533 355555666666666666666666666666665532 2333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Q psy3224 1041 LANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGIL 1105 (1278)
Q Consensus 1041 la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~ 1105 (1278)
.|.++..... ..+......+ ...+...+|...|++++...|++..+
T Consensus 90 ~gL~~~~~~~-----~~~~~~~~~d--------------rD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 90 RGLSYYEQDE-----GSLQSFFRSD--------------RDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHhh-----hHHhhhcccc--------------cCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 3333322221 1111111000 01122557888888888888887644
No 223
>KOG1586|consensus
Probab=97.73 E-value=0.0029 Score=65.50 Aligned_cols=121 Identities=19% Similarity=0.168 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHhCCChH------HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc
Q psy3224 982 NLERALQLLDEAIKVFPDFA------KLWMMKGQIEEQK-NLLDKAHDTFSQAIKKCPHS------VPLWIMLANLEERR 1048 (1278)
Q Consensus 982 ~~~~A~~~l~~al~~~p~~~------~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~l~~~~ 1048 (1278)
++++|..+++++++++-+-+ ..+..+|.+|... .++++|+.+|+++-+..... -..++..+......
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 55555555555555443322 3344667777554 77888888888877554321 23455667777788
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Q psy3224 1049 KMLIKARSVLEKGRLRNPNCAEL-------WLAAIRVEIRAGLKDIANTMMAKALQECPNA 1102 (1278)
Q Consensus 1049 g~~~~A~~~l~kal~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~ 1102 (1278)
+++.+|+.+|++.....-+++.+ ++..+.++.-..+.-.+...+++..+.+|.-
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 88999999998887766655532 2333344444567777777777877888764
No 224
>KOG1585|consensus
Probab=97.71 E-value=0.016 Score=60.65 Aligned_cols=130 Identities=14% Similarity=0.120 Sum_probs=69.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHH
Q psy3224 834 YFEKNHGTRESLETLLQKAVAHC-----PKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNS------EEIWLAAVK 902 (1278)
Q Consensus 834 ~l~~~~g~~~~A~~~~~~al~~~-----P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~ 902 (1278)
.+......+.++..+|+++.... |+....-+..|--....-+++.|+++|++++.....+ .+.+-..+.
T Consensus 79 mLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 79 MLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 34444445555566666555432 2222222233333345667788888888877655432 334455566
Q ss_pred HHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 903 LESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAS 963 (1278)
Q Consensus 903 l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 963 (1278)
++.+...+.+|-..+.+-..........|.....+...+.++....+|..|..+|+...+.
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI 219 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence 6666667766665555543333233444444455555555555566666666666655443
No 225
>KOG1586|consensus
Probab=97.68 E-value=0.014 Score=60.67 Aligned_cols=187 Identities=16% Similarity=0.137 Sum_probs=115.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ChHHHHHHHHHHHHHcCCHHHH
Q psy3224 947 NNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFP------DFAKLWMMKGQIEEQKNLLDKA 1020 (1278)
Q Consensus 947 ~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~~A 1020 (1278)
.+.+++|..+|.++-. +|...+++..|-..|.++-...- +....|...+.+|. ..++.+|
T Consensus 27 ~~k~eeAadl~~~Aan-------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eA 92 (288)
T KOG1586|consen 27 SNKYEEAAELYERAAN-------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEA 92 (288)
T ss_pred CcchHHHHHHHHHHHH-------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHH
Confidence 3567788777777643 33334444444444444332211 12344444555554 4488888
Q ss_pred HHHHHHHHHhCCCCHH------HHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHH
Q psy3224 1021 HDTFSQAIKKCPHSVP------LWIMLANLEERR-KMLIKARSVLEKGRLRNPNCA------ELWLAAIRVEIRAGLKDI 1087 (1278)
Q Consensus 1021 ~~~~~~al~~~p~~~~------~~~~la~l~~~~-g~~~~A~~~l~kal~~~p~~~------~~~~~l~~~~~~~g~~~~ 1087 (1278)
..++++++++..+-+. .+..+|.+|... .++++|+.+|+++-....... ..++..+..-..+++|.+
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~ 172 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSK 172 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888887765433 334678887754 888888888888877654322 234455555566777777
Q ss_pred HHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchh
Q psy3224 1088 ANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKS 1167 (1278)
Q Consensus 1088 A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a 1167 (1278)
|+.+|+++....-++..+-+.. .
T Consensus 173 Ai~iyeqva~~s~~n~LLKys~-------------K-------------------------------------------- 195 (288)
T KOG1586|consen 173 AIDIYEQVARSSLDNNLLKYSA-------------K-------------------------------------------- 195 (288)
T ss_pred HHHHHHHHHHHhccchHHHhHH-------------H--------------------------------------------
Confidence 7777777665544443222100 0
Q ss_pred hhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHH
Q psy3224 1168 VDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAW 1215 (1278)
Q Consensus 1168 ~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~ 1215 (1278)
..++.-|.+++...+.-.+...+++-.+++|.+.+..
T Consensus 196 -----------dyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 196 -----------DYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred -----------HHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 0445567777777888888889999999999988753
No 226
>KOG2796|consensus
Probab=97.61 E-value=0.02 Score=60.47 Aligned_cols=136 Identities=16% Similarity=0.077 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVF-PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKC------PHSVPLWIM 1040 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~ 1040 (1278)
.+.+.++.++...+.|.-....+.+.++.+ |..+.+...+|.+..+.|+.+.|..+|++.-+.. .....+..+
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 466677888888889999999999999988 5678888889999999999999999988554322 123445667
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Q psy3224 1041 LANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAG 1103 (1278)
Q Consensus 1041 la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~ 1103 (1278)
.+.++.-.+++..|...|.+++..+|.++.+-...+.++.-.|+...|++.++.++...|...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 778888889999999999999999999998888888888889999999999999999998754
No 227
>KOG2796|consensus
Probab=97.59 E-value=0.05 Score=57.56 Aligned_cols=140 Identities=11% Similarity=0.056 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHH
Q psy3224 862 LWLMGAKSKWLAGDVPAARGILSLAFQAN-PNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAA 940 (1278)
Q Consensus 862 ~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~l 940 (1278)
+.+.++.++.-.|.|.-....+.+.++.+ |..+.+...++.+..+.|+.+.|..+|++.-+..+.+...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~---------- 248 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL---------- 248 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc----------
Confidence 34556666666777777777777777776 3456666677777777777777766666542111100001
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHH
Q psy3224 941 VKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKA 1020 (1278)
Q Consensus 941 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A 1020 (1278)
.....+..+.+.++.-.+++..|...|.+++..+|.++.+....+.|+.-.|+...|
T Consensus 249 -----------------------q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DA 305 (366)
T KOG2796|consen 249 -----------------------QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDA 305 (366)
T ss_pred -----------------------chhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHH
Confidence 111345555666666777777777778888888887777777777777778888888
Q ss_pred HHHHHHHHHhCCCC
Q psy3224 1021 HDTFSQAIKKCPHS 1034 (1278)
Q Consensus 1021 ~~~~~~al~~~p~~ 1034 (1278)
++.++.++...|..
T Consensus 306 iK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 306 LKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHhccCCcc
Confidence 88888888877763
No 228
>KOG1585|consensus
Probab=97.56 E-value=0.014 Score=60.96 Aligned_cols=201 Identities=15% Similarity=0.071 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHH
Q psy3224 862 LWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEI------WLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEE 935 (1278)
Q Consensus 862 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~------~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~ 935 (1278)
.|...+..|...+++++|...+.++.+-..++... +-..+.+......+.++..+++++.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs-------------- 98 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKAS-------------- 98 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH--------------
Confidence 34444556666777777777777776544433222 2222333333344444444444443
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh------HHHHHHHHH
Q psy3224 936 IWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF------AKLWMMKGQ 1009 (1278)
Q Consensus 936 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~ 1009 (1278)
.+|.+.|..+.|-..++++-+. ....+++.|+.+|++++.....+ .+++...++
T Consensus 99 ------~lY~E~GspdtAAmaleKAak~--------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 99 ------ELYVECGSPDTAAMALEKAAKA--------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred ------HHHHHhCCcchHHHHHHHHHHH--------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 3444556655555555554322 23456677777777776654432 345555667
Q ss_pred HHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHH
Q psy3224 1010 IEEQKNLLDKAHDTFSQAIK------KCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRN----PNCAELWLAAIRVE 1079 (1278)
Q Consensus 1010 ~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~----p~~~~~~~~l~~~~ 1079 (1278)
++.+...+.+|-..+.+-.. ..|.....+.....++....++..|...|+...++. |++....-.+...|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 77777778777766655432 234444556666666667778888888888776653 33444444444443
Q ss_pred HHcCCHHHHHHHHHHHHH
Q psy3224 1080 IRAGLKDIANTMMAKALQ 1097 (1278)
Q Consensus 1080 ~~~g~~~~A~~~~~kal~ 1097 (1278)
..|+.++...++.--+-
T Consensus 239 -d~gD~E~~~kvl~sp~~ 255 (308)
T KOG1585|consen 239 -DEGDIEEIKKVLSSPTV 255 (308)
T ss_pred -ccCCHHHHHHHHcChHh
Confidence 46777777766654433
No 229
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.55 E-value=0.00074 Score=67.78 Aligned_cols=100 Identities=13% Similarity=0.021 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHh
Q psy3224 762 YECARAIYAQALATFPSKKSIWLRAAYFEKNHGTR---ESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKN 838 (1278)
Q Consensus 762 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~---~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~ 838 (1278)
|+.|++.++.....+|.+.+.+..++..+..+.++ .++..+++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~mied--------------------------------- 53 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIED--------------------------------- 53 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHH---------------------------------
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHH---------------------------------
Confidence 68899999999999999999999998888776544 334444443
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy3224 839 HGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAG-----------DVPAARGILSLAFQANPNSEEIWLAA 900 (1278)
Q Consensus 839 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-----------~~~~A~~~l~~al~~~p~~~~~~~~l 900 (1278)
|+.-|++|+.++|+...++..+|.+|...+ .+++|..+|+++...+|++...+..+
T Consensus 54 ------AisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 54 ------AISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp ------HHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred ------HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 888899999999999999999999887654 36778888888888899865544443
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.55 E-value=0.0046 Score=71.32 Aligned_cols=190 Identities=14% Similarity=0.129 Sum_probs=114.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHH
Q psy3224 865 MGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLE 944 (1278)
Q Consensus 865 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~ 944 (1278)
.+.+-.++..+...-++.-.+|++++|++..+|+.++. .......+|..+|+++++... ..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE-----------------~~ 233 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGE-----------------AS 233 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH-----------------Hh
Confidence 33444567778888888888888888888888888774 334556777788877762211 00
Q ss_pred HHcCCHHHHHHHHHHHH-Hh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHcCCHHH
Q psy3224 945 SENNEYERARRLLAKAR-AS--APTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPD--FAKLWMMKGQIEEQKNLLDK 1019 (1278)
Q Consensus 945 ~~~g~~~~A~~~l~~al-~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~ 1019 (1278)
.......+...-+-... .. ++-..+-..++.+.++.|+.++|++.+...++.+|. +..+...+..++...+.+.+
T Consensus 234 lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad 313 (539)
T PF04184_consen 234 LGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYAD 313 (539)
T ss_pred hchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHH
Confidence 00000000000010111 11 122345556778888888888888888888887774 45678888888888888888
Q ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q psy3224 1020 AHDTFSQAIKK-CPHSVPLWIMLANLEER-RKM---------------LIKARSVLEKGRLRNPNCAELWL 1073 (1278)
Q Consensus 1020 A~~~~~~al~~-~p~~~~~~~~la~l~~~-~g~---------------~~~A~~~l~kal~~~p~~~~~~~ 1073 (1278)
+..++.+.-+. -|++..+.+..+-+..+ .++ -..|++.+.+|++.||.-+..++
T Consensus 314 ~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 314 VQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 88877775332 24555444443333222 111 12456777777777777766543
No 231
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.51 E-value=0.00016 Score=56.01 Aligned_cols=43 Identities=21% Similarity=0.468 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHH
Q psy3224 1178 PHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYK 1220 (1278)
Q Consensus 1178 ~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~ 1220 (1278)
|.++..+|.+|...|++++|+++|+++++.+|+++++|..+++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3478889999999999999999999999999999999988865
No 232
>KOG0530|consensus
Probab=97.48 E-value=0.031 Score=59.20 Aligned_cols=235 Identities=13% Similarity=0.112 Sum_probs=150.2
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHHH
Q psy3224 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN-LLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLI-KARSVLE 1059 (1278)
Q Consensus 982 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~-~A~~~l~ 1059 (1278)
.-..|+.+...++..+|.+..+|...-.++...+ +..+-.+++...++.+|++..+|...-.+....|++. .-+++.+
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence 4456777777888888887777777666664433 5667777888888888888888887777777777777 7777888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhH-HHHHHHHhccCcchhhh
Q psy3224 1060 KGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTK-SVDALKKCEHDPHVLLA 1138 (1278)
Q Consensus 1060 kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~-A~~~l~k~~~~p~~~~~ 1138 (1278)
.++..+..+-.+|...-.++...+.++.-+.+....++.+-.+-.+|..+-........... +.-.-
T Consensus 138 ~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~------------ 205 (318)
T KOG0530|consen 138 LMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELER------------ 205 (318)
T ss_pred HHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHH------------
Confidence 88888888888888888888777888888888888888777677777755444333221111 10000
Q ss_pred hhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHh-cC--CHHHHHHHHHHHH-hhCCCChhH
Q psy3224 1139 VSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWC-EN--KNQKCREWFNRTV-KIDPDLGDA 1214 (1278)
Q Consensus 1139 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~-~g--~~~~A~~~~~kal-~~~P~~~d~ 1214 (1278)
...-++..+...|+|..+|+.|.-++.. .| ...+-..+....+ ...-..|..
T Consensus 206 ------------------------El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~l 261 (318)
T KOG0530|consen 206 ------------------------ELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFL 261 (318)
T ss_pred ------------------------HHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhH
Confidence 0111234455677777788887766654 33 1233333333333 233344555
Q ss_pred HHHHHHHH------HHhCCHH---HHHHHHHHHH-HhCCCCcchhhhh
Q psy3224 1215 WAYFYKFE------IINGTEE---TQAEVKKRCL-AAEPKHGENWCRV 1252 (1278)
Q Consensus 1215 ~~~l~~~~------~~~G~~~---~A~~~l~ka~-~~~P~~~~~w~~~ 1252 (1278)
+..+..++ .+.+..+ +|.++++.+. +.+|-....|-+.
T Consensus 262 la~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~La~~~DpiR~nyW~~~ 309 (318)
T KOG0530|consen 262 LAFLLDLYAEDALAYKSSAEELARKAVKLYEDLAIKVDPIRKNYWRHK 309 (318)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 55555444 2334444 4555665555 6788888888887
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.47 E-value=0.00082 Score=77.49 Aligned_cols=64 Identities=14% Similarity=0.178 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKL---WMMKGQIEEQKNLLDKAHDTFSQAIKK 1030 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 1030 (1278)
+..|+++|..+...|++++|+..|+++++++|++..+ |+++|.+|..+|++++|+.+|+++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3555555555555555555555555555555555532 555555555555555555555555554
No 234
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.47 E-value=0.053 Score=63.69 Aligned_cols=167 Identities=20% Similarity=0.205 Sum_probs=98.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH---
Q psy3224 930 NPNSEEIWLAAVKLESENNEYERARRLLAKARASAP-----TPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFA--- 1001 (1278)
Q Consensus 930 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p-----~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~--- 1001 (1278)
.......|..++.+..+.|.++.|...+.++....+ .+.+.+..+.+++..|+..+|+..++..+.......
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 334566788888888899999999988888887652 367888888888899999999988888877221110
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHH
Q psy3224 1002 --KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERR------KMLIKARSVLEKGRLRNPNCAELWL 1073 (1278)
Q Consensus 1002 --~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~------g~~~~A~~~l~kal~~~p~~~~~~~ 1073 (1278)
......+..+.............. ......++..+|...... +..+.+...|..++..+|+....|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~ 296 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKES-----KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWH 296 (352)
T ss_pred ccHHHHhhccccccccccccchhhhh-----HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHH
Confidence 000000000000000000000000 000134555556555555 6677777777777777777777766
Q ss_pred HHHHHHHHcC-----------------CHHHHHHHHHHHHHHCCC
Q psy3224 1074 AAIRVEIRAG-----------------LKDIANTMMAKALQECPN 1101 (1278)
Q Consensus 1074 ~l~~~~~~~g-----------------~~~~A~~~~~kal~~~P~ 1101 (1278)
.++.++...- -...|+..|-+++...+.
T Consensus 297 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 297 SWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 6666443221 123478888888888877
No 235
>KOG4507|consensus
Probab=97.45 E-value=0.011 Score=68.51 Aligned_cols=110 Identities=13% Similarity=-0.025 Sum_probs=77.1
Q ss_pred hHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccc
Q psy3224 748 TWMEDAESCAN-QGAYECARAIYAQALATFPSKK--SIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSN 824 (1278)
Q Consensus 748 ~~~~la~~~~~-~g~~~~A~~~~~~al~~~P~~~--~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~ 824 (1278)
.+..++.+|++ +|+.-+|..++..++...|... .+.+.+|.++.+.|...+|--++..|+...|.-..
T Consensus 214 ~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~--------- 284 (886)
T KOG4507|consen 214 VLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTS--------- 284 (886)
T ss_pred HHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccc---------
Confidence 34455666665 5889999999998888776533 46788888999999888888777777666554321
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q psy3224 825 KKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKS 869 (1278)
Q Consensus 825 ~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~ 869 (1278)
-++..+.++...+++......|..+.+..|......-..+.+
T Consensus 285 ---n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ 326 (886)
T KOG4507|consen 285 ---NYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHA 326 (886)
T ss_pred ---cceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHH
Confidence 144556666677778788888888888888765544444443
No 236
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.44 E-value=0.38 Score=55.14 Aligned_cols=187 Identities=13% Similarity=0.007 Sum_probs=113.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHH-------HHHH-H---cCCHHHHHHHHHHHHHhCCChH---HHHHHH
Q psy3224 942 KLESENNEYERARRLLAKARASAPTPRVMIQSA-------KLEW-C---LDNLERALQLLDEAIKVFPDFA---KLWMMK 1007 (1278)
Q Consensus 942 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la-------~~~~-~---~g~~~~A~~~l~~al~~~p~~~---~~~~~l 1007 (1278)
....+.++..+|...+.-....+|+..+--.+. .+.. . .-+...-+.+++.+-..+-+.- ..+..-
T Consensus 306 s~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~ 385 (549)
T PF07079_consen 306 SFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFG 385 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 344577788888888887777787632111111 1111 0 1122223334444444444432 333444
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH--H------HHHHHH---hCC---CCHHHH
Q psy3224 1008 GQIEEQKNL-LDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARS--V------LEKGRL---RNP---NCAELW 1072 (1278)
Q Consensus 1008 a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~--~------l~kal~---~~p---~~~~~~ 1072 (1278)
+.-+++.|. -++|+..++.+++..|.+...-...-.+. ...|.+|+. . ++..+. +.| .+.++-
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fv--Kq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eia 463 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFV--KQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIA 463 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence 556677776 88999999999999888764333221111 111222221 1 222222 122 333443
Q ss_pred HHH--HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhcc
Q psy3224 1073 LAA--IRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEH 1131 (1278)
Q Consensus 1073 ~~l--~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~ 1131 (1278)
..+ +..++..|++.++.-+..=..+..| ++.++..++.++....+|.+|-..|.....
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 334 4477889999999988888888999 899999999999999999999999998843
No 237
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.38 E-value=0.00047 Score=53.37 Aligned_cols=43 Identities=26% Similarity=0.469 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHh
Q psy3224 515 PPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAAR 557 (1278)
Q Consensus 515 ~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~ 557 (1278)
|++|+.+|+++...|++++|..+|+++++.+|++..+|...++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4688999999999999999999999999999999999877664
No 238
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.33 E-value=0.017 Score=66.75 Aligned_cols=60 Identities=17% Similarity=0.086 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 748 TWMEDAESCANQGAYECARAIYAQALATFPS--KKSIWLRAAYFEKNHGTRESLETLLQKAV 807 (1278)
Q Consensus 748 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~l~~al 807 (1278)
+-..+|.+.++.|+.++|++.|+..++.+|. +..+...+..++...+.+.++..++.+--
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 4566899999999999999999999998886 45688999999999999999999998854
No 239
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.33 E-value=0.029 Score=64.39 Aligned_cols=117 Identities=14% Similarity=0.098 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCChHHHHHHHHHHHHH---cCCHHHHHHHHHHHH-HhCCCCHHHH
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKV----FPDFAKLWMMKGQIEEQ---KNLLDKAHDTFSQAI-KKCPHSVPLW 1038 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al-~~~p~~~~~~ 1038 (1278)
+.+...+...|+...+|+.-+.+.+..-.. .++.+.+...+|.++.+ .|+.++|+.++..++ ...+.+++++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 456666666777778888877777776655 44567777788888877 788888888888744 4445667777
Q ss_pred HHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy3224 1039 IMLANLEER---------RKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGL 1084 (1278)
Q Consensus 1039 ~~la~l~~~---------~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~ 1084 (1278)
..+|++|.. ....++|+.+|.++...+|+.-.. .+++.++...|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G-IN~AtLL~~~g~ 274 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG-INAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHcCC
Confidence 777777653 223678888888888888644333 455555555554
No 240
>KOG4555|consensus
Probab=97.31 E-value=0.0068 Score=56.91 Aligned_cols=97 Identities=18% Similarity=0.105 Sum_probs=77.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc
Q psy3224 973 SAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS----VPLWIMLANLEERR 1048 (1278)
Q Consensus 973 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~l~~~~ 1048 (1278)
-+..+...|+.+.|++.|.+++...|..+.+|.+.++.+.-+|+.++|.+-+++++++.... ..++...+.+|...
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 35566678888888888888888888888888888888888888888888888888876543 34666778888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q psy3224 1049 KMLIKARSVLEKGRLRNPNCA 1069 (1278)
Q Consensus 1049 g~~~~A~~~l~kal~~~p~~~ 1069 (1278)
|+.+.|+.-|+.+-++.....
T Consensus 129 g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred CchHHHHHhHHHHHHhCCHHH
Confidence 888999988888877765433
No 241
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.30 E-value=0.0017 Score=65.23 Aligned_cols=88 Identities=20% Similarity=0.134 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---
Q psy3224 983 LERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN----------LLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRK--- 1049 (1278)
Q Consensus 983 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g----------~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g--- 1049 (1278)
++.|++.++.....+|.+++.++..|.++..+. -+++|+.-|+.+|.++|+...++..+|..+...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 455666666666666666666666666554432 2344555566666666666666666666554422
Q ss_pred --------CHHHHHHHHHHHHHhCCCCHH
Q psy3224 1050 --------MLIKARSVLEKGRLRNPNCAE 1070 (1278)
Q Consensus 1050 --------~~~~A~~~l~kal~~~p~~~~ 1070 (1278)
.+++|..+|++|...+|++..
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 244555555555556665543
No 242
>KOG0890|consensus
Probab=97.28 E-value=1.8 Score=59.54 Aligned_cols=322 Identities=11% Similarity=-0.007 Sum_probs=150.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhCCcc-ccHHHHHHHHH-HHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHH
Q psy3224 675 TAAKLEEAHGNNAMVDKIIDRALSSLSANGVE-INREHWFKEAI-EAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMED 752 (1278)
Q Consensus 675 ~la~~~~~~g~~~~A~~il~~al~~~~~~~~~-~~~~~~l~~A~-~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~l 752 (1278)
.++.+..+.+.+..|.-.+++-- ..... ...+......+ .|...++++....+...... .......
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~----~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a--------~~sl~~q 1455 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHR----STEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA--------DPSLYQQ 1455 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhc----cccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc--------CccHHHH
Confidence 45666666677777766666531 11000 11122222222 45555555555444432111 0123334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHH
Q psy3224 753 AESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRA 832 (1278)
Q Consensus 753 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~ 832 (1278)
.......|++..|..+|+++++..|.....+....+.....+.+...+...+-.....+....- |..+
T Consensus 1456 il~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~------------~~s~ 1523 (2382)
T KOG0890|consen 1456 ILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDE------------LNSL 1523 (2382)
T ss_pred HHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHH------------HHHH
Confidence 4455667889999999999999999888878877777778888888777666655554444332 2222
Q ss_pred -HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH--HHHHHHHHh--CC--------CCHHHHHH
Q psy3224 833 -AYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAAR--GILSLAFQA--NP--------NSEEIWLA 899 (1278)
Q Consensus 833 -a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~--~~l~~al~~--~p--------~~~~~~~~ 899 (1278)
....+..++++....... ..+-.+..+. .+|.++.....-+.-. +..+...+. .| .....|..
T Consensus 1524 ~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~ 1599 (2382)
T KOG0890|consen 1524 GVEAAWRLSQWDLLESYLS---DRNIEYWSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEI 1599 (2382)
T ss_pred HHHHHhhhcchhhhhhhhh---cccccchhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHH
Confidence 223345555554433322 1111111111 1455554432211111 111111110 00 00111111
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCC-----HHHHH
Q psy3224 900 AVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARA---SAPT-----PRVMI 971 (1278)
Q Consensus 900 la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~---~~p~-----~~~~~ 971 (1278)
+..++.- -+.+...+.+.+.- .....-.+..-|......-....+..+-+-.+++++- ..|+ .+.|+
T Consensus 1600 ~~kLH~l-~el~~~~~~l~~~s----~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wL 1674 (2382)
T KOG0890|consen 1600 LMKLHLL-LELENSIEELKKVS----YDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWL 1674 (2382)
T ss_pred HHHHHHH-HHHHHHHHHhhccC----ccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHH
Confidence 1111110 00111111111000 0000011112333322211111112222333333221 1222 47777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 972 QSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKC 1031 (1278)
Q Consensus 972 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 1031 (1278)
..|++.+..|.++.|...+-.|.+.. -+.+....|..++..|+-..|+.+++..+..+
T Consensus 1675 qsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1675 QSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 77777777777777777777776655 35677777777777777777777777777544
No 243
>KOG4555|consensus
Probab=97.27 E-value=0.0055 Score=57.50 Aligned_cols=95 Identities=18% Similarity=0.032 Sum_probs=83.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH
Q psy3224 1005 MMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCA----ELWLAAIRVEI 1080 (1278)
Q Consensus 1005 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~----~~~~~l~~~~~ 1080 (1278)
-..|.++...|+.+.|++.|.+++..+|..+.+|.+.+..+.-+|+.++|+.-+++++++..... ..+...+.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 34566778889999999999999999999999999999999999999999999999999875443 45777888999
Q ss_pred HcCCHHHHHHHHHHHHHHC
Q psy3224 1081 RAGLKDIANTMMAKALQEC 1099 (1278)
Q Consensus 1081 ~~g~~~~A~~~~~kal~~~ 1099 (1278)
..|+.+.|..-|+.+-++-
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 9999999999999987765
No 244
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.26 E-value=0.00036 Score=61.88 Aligned_cols=64 Identities=9% Similarity=0.156 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CC-CC---hhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy3224 1178 PHVLLAVSKLFWCENKNQKCREWFNRTVKI---DP-DL---GDAWAYFYKFEIINGTEETQAEVKKRCLAA 1241 (1278)
Q Consensus 1178 ~~~l~~lg~~~~~~g~~~~A~~~~~kal~~---~P-~~---~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~ 1241 (1278)
..++..+|.+|...|++++|+.+|++++++ .+ ++ ..++..++.++...|+.++|.+++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 348999999999999999999999999975 22 22 347889999999999999999999999875
No 245
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.25 E-value=0.21 Score=60.64 Aligned_cols=152 Identities=20% Similarity=0.176 Sum_probs=97.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC--HH-----HHHH-HHHHHH----HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy3224 945 SENNEYERARRLLAKARASAPT--PR-----VMIQ-SAKLEW----CLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEE 1012 (1278)
Q Consensus 945 ~~~g~~~~A~~~l~~al~~~p~--~~-----~~~~-la~~~~----~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 1012 (1278)
--.|+-+.++..+.++.+...- +- +++. ....+. .....+.|..++....+.+|++.-..+..|+++.
T Consensus 199 GF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~ 278 (468)
T PF10300_consen 199 GFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLER 278 (468)
T ss_pred CcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3567888888888887663221 11 1111 111111 2346677888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCH--
Q psy3224 1013 QKNLLDKAHDTFSQAIKKCPH----SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWL-AAIRVEIRAGLK-- 1085 (1278)
Q Consensus 1013 ~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~-~l~~~~~~~g~~-- 1085 (1278)
..|+.++|++.|++++..... ..-.+..++.++..+.+|++|...|.+..+.+.-+..+|. ..+.++...|+.
T Consensus 279 ~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~ 358 (468)
T PF10300_consen 279 LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEE 358 (468)
T ss_pred HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchh
Confidence 888888888888877742222 1234556677777888888888888888877665544433 333467777777
Q ss_pred -----HHHHHHHHHHH
Q psy3224 1086 -----DIANTMMAKAL 1096 (1278)
Q Consensus 1086 -----~~A~~~~~kal 1096 (1278)
++|..++.++-
T Consensus 359 ~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 359 AKEHKKEAEELFRKVP 374 (468)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 55555555543
No 246
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.25 E-value=0.12 Score=58.43 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=70.9
Q ss_pred HcCCHHHHHHHHHHHHHhC----CC-----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC----C------Ch----H
Q psy3224 946 ENNEYERARRLLAKARASA----PT-----PRVMIQSAKLEWCLD-NLERALQLLDEAIKVF----P------DF----A 1001 (1278)
Q Consensus 946 ~~g~~~~A~~~l~~al~~~----p~-----~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~----p------~~----~ 1001 (1278)
..|+++.|..++.++-... |+ ..+++..|......+ +++.|..++++++... + +. .
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4455555555555544332 21 345555666666666 7777777777666652 1 11 2
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 1002 KLWMMKGQIEEQKNLLD---KAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNP 1066 (1278)
Q Consensus 1002 ~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p 1066 (1278)
.++..++.++...+.++ +|..+++.+-...|+.+.++.....+..+.++.+.+.+.+.+++...+
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 45555666666665443 455555556566677676665555566567777777777777776544
No 247
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.19 E-value=1.3 Score=56.12 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=33.0
Q ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHH----HHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 759 QGAYECARAIYAQALATF--PSKKSIWLR----AAYFEKNHGTRESLETLLQKAVA 808 (1278)
Q Consensus 759 ~g~~~~A~~~~~~al~~~--P~~~~~~~~----la~~~~~~g~~~~A~~~l~~al~ 808 (1278)
.+++..|...++.+.... ..+..+... -+.+....+..+++.+.++++..
T Consensus 152 ~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 152 HKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred cccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 378888998888887765 355543322 25555666777777777777643
No 248
>KOG0530|consensus
Probab=97.13 E-value=0.074 Score=56.48 Aligned_cols=163 Identities=13% Similarity=0.123 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHH-HHHHHHHHHHH
Q psy3224 845 LETLLQKAVAHCPKSEVLWLMGAKSKWL-AGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYE-RARRLLAKARA 922 (1278)
Q Consensus 845 A~~~~~~al~~~P~~~~~~~~la~~~~~-~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~-~A~~~l~~al~ 922 (1278)
|+.+.+.++..+|.+..+|...-.++.. ..++.+-++.+...+..+|++-.+|...-.+....|++. .-+...+.++
T Consensus 62 Al~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l- 140 (318)
T KOG0530|consen 62 ALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLML- 140 (318)
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHH-
Confidence 5566666666666666555554444443 234555556666666666666666655555555555544 4444555544
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHHH
Q psy3224 923 QAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAP-TPRVMIQSAKLEWC-LD-----NLERALQLLDEAIK 995 (1278)
Q Consensus 923 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~la~~~~~-~g-----~~~~A~~~l~~al~ 995 (1278)
..+..+..+|...-.+...-+.++.-+.+...++..+- +..+|...-.+... .| ..+.-+.+..+.+.
T Consensus 141 -----~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~ 215 (318)
T KOG0530|consen 141 -----DDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKIL 215 (318)
T ss_pred -----hccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555432 22233221110000 11 12333445555666
Q ss_pred hCCChHHHHHHHHHHHHH
Q psy3224 996 VFPDFAKLWMMKGQIEEQ 1013 (1278)
Q Consensus 996 ~~p~~~~~~~~la~~~~~ 1013 (1278)
..|++..+|..+.-++..
T Consensus 216 ~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 216 LVPNNESAWNYLKGLLEL 233 (318)
T ss_pred hCCCCccHHHHHHHHHHh
Confidence 666666666666555543
No 249
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.10 E-value=0.25 Score=60.01 Aligned_cols=182 Identities=10% Similarity=0.049 Sum_probs=123.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHH------HHHHHH-HH-H--HcCCHHHHHH
Q psy3224 1022 DTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNP-NCAEL------WLAAIR-VE-I--RAGLKDIANT 1090 (1278)
Q Consensus 1022 ~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p-~~~~~------~~~l~~-~~-~--~~g~~~~A~~ 1090 (1278)
-+|.-++..-|. ....+..+.--.|+-+.++..+.++.+... ..+-+ |+.... +. . .....+.|..
T Consensus 178 G~f~L~lSlLPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 178 GLFNLVLSLLPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHHhCCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 345555666662 334444444557888899999988877332 12211 111111 11 1 2456788999
Q ss_pred HHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhh
Q psy3224 1091 MMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDA 1170 (1278)
Q Consensus 1091 ~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~ 1170 (1278)
++....+.+|++.......+.++...|+.++|++.|+++.........+
T Consensus 255 lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql------------------------------- 303 (468)
T PF10300_consen 255 LLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQL------------------------------- 303 (468)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhH-------------------------------
Confidence 9999999999988888888899989999999999999774222200000
Q ss_pred hhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHhCCH-------HHHHHHHHHHHHhC
Q psy3224 1171 LKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDA-WAYFYKFEIINGTE-------ETQAEVKKRCLAAE 1242 (1278)
Q Consensus 1171 l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~-~~~l~~~~~~~G~~-------~~A~~~l~ka~~~~ 1242 (1278)
..-.++.+|+++....+|++|..+|.+.++.+.-..-. .+..+.++...|+. ++|.+++.++-.+.
T Consensus 304 ------~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 304 ------HHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred ------HHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 01167899999999999999999999999976554333 33347788889999 88888887777654
Q ss_pred C
Q psy3224 1243 P 1243 (1278)
Q Consensus 1243 P 1243 (1278)
.
T Consensus 378 ~ 378 (468)
T PF10300_consen 378 Q 378 (468)
T ss_pred h
Confidence 3
No 250
>KOG4507|consensus
Probab=97.07 E-value=0.15 Score=59.64 Aligned_cols=116 Identities=14% Similarity=0.059 Sum_probs=86.2
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q psy3224 845 LETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNS--EEIWLAAVKLESENNEYERARRLLAKARA 922 (1278)
Q Consensus 845 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~l~~~~g~~~~A~~~l~~al~ 922 (1278)
...++-.+++.+|.+..++.+.+......|+..+|..++..++-..|.. ..+.+.++.++.+.|...+|--++..|+
T Consensus 198 ~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~- 276 (886)
T KOG4507|consen 198 IGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAAL- 276 (886)
T ss_pred HHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhc-
Confidence 4455567777888777655544444444889999999999988877653 3467788888889998888888877765
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 923 QAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT 966 (1278)
Q Consensus 923 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 966 (1278)
...|.-..-++.++.++...+.+......|..+.+..|.
T Consensus 277 -----~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~ 315 (886)
T KOG4507|consen 277 -----DDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPG 315 (886)
T ss_pred -----cCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcc
Confidence 555555555778888888888888888888888887775
No 251
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.06 E-value=0.27 Score=57.70 Aligned_cols=279 Identities=15% Similarity=0.161 Sum_probs=142.2
Q ss_pred ccchHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHhcCCchHHHHHHHH-
Q psy3224 493 DINDIKKARLLLKSVRETNP-NHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARLQPVDTARAVIAQ- 570 (1278)
Q Consensus 493 ~~g~~~~A~~~l~~~l~~~P-~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~L~~~~~A~~~l~k- 570 (1278)
++|+++. +...+...+ ..++..+..+-+....++++++..+++++....-..... ...+.+..+...+.+
T Consensus 10 rl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~----~~~~s~~~~y~~l~~l 81 (352)
T PF02259_consen 10 RLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSA----LSSESYQRAYPSLVKL 81 (352)
T ss_pred hcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHH----hhhhhHHHHHHHHHHH
Confidence 4477777 333333333 234677777777778999999999999887653221111 011111111110000
Q ss_pred -HHHhCCCCHHHHHHHHHchhhHHHHHHHHHHHHHhCCCCHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-
Q psy3224 571 -AVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLWKAAVELEDPEDARILLSRAVECCPTSVELWLALAR- 648 (1278)
Q Consensus 571 -aL~~~P~s~~lw~~~~~le~~~~~A~~ll~rAle~~P~s~~Lw~al~~l~~~e~A~~~l~kal~~~P~~~~~w~~la~- 648 (1278)
.|........+.................+..-+...+.++..|.-++.... .+|. .+.........|+.+++
T Consensus 82 q~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~~~~~~il~~R~-----~~l~-~~~~~~~~~~~~l~~a~~ 155 (352)
T PF02259_consen 82 QQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDFSVWEPILSLRR-----LVLS-LILLPEELAETWLKFAKL 155 (352)
T ss_pred hHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH-----HHHh-cccchhHHHHHHHHHHHH
Confidence 000000000000000000111222233444444555666666655443321 0111 01112233455666554
Q ss_pred ---hcCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHH
Q psy3224 649 ---LETYENARKVLNKARENIPT----DRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEK 721 (1278)
Q Consensus 649 ---l~~~~~A~~~l~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~ 721 (1278)
.|.++.|...+.++....+. .+.+.+..+++.-..|+..+|...++..+...............+........
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESL 235 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccccc
Confidence 37788888888877765422 46677778888888888888888888777632221111000000000000000
Q ss_pred cCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy3224 722 AGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQ------GAYECARAIYAQALATFPSKKSIWLRAAYFEKNH 793 (1278)
Q Consensus 722 ~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~ 793 (1278)
.....+. . ..........+++.+|+..... +..+.+...|.++++.+|+...+|..++.++...
T Consensus 236 ~~~~~~~-------~-~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 236 EVISSTN-------L-DKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccccccc-------h-hhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 0000000 0 0000122356778888888777 8999999999999999999999999998877654
No 252
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.05 E-value=0.00095 Score=59.17 Aligned_cols=62 Identities=13% Similarity=0.007 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C-C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1002 KLWMMKGQIEEQKNLLDKAHDTFSQAIKKC---P-H---SVPLWIMLANLEERRKMLIKARSVLEKGRL 1063 (1278)
Q Consensus 1002 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p-~---~~~~~~~la~l~~~~g~~~~A~~~l~kal~ 1063 (1278)
.++..+|.+|...|++++|+.+|+++++.. + + ...++..+|.++...|++++|+.+|+++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444444444444444444444444321 1 1 122333444444445555555555544443
No 253
>KOG2041|consensus
Probab=97.05 E-value=1.2 Score=53.37 Aligned_cols=250 Identities=13% Similarity=0.003 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccH------HHHHHHHHHHHHcCCh
Q psy3224 652 YENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINR------EHWFKEAIEAEKAGSV 725 (1278)
Q Consensus 652 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~------~~~l~~A~~~~~~g~~ 725 (1278)
.++|+.. ++.+| ++..|..+|+.....-.++.|...|-+.-.. .|+..-. ..-...|+...-.|.+
T Consensus 679 ledA~qf----iEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~f 750 (1189)
T KOG2041|consen 679 LEDAIQF----IEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEF 750 (1189)
T ss_pred hHHHHHH----HhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcch
Confidence 4455443 34567 7889999998888877788887777655432 1221110 1123556666667888
Q ss_pred hHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 726 HTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATF--PSKKSIWLRAAYFEKNHGTRESLETLL 803 (1278)
Q Consensus 726 ~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~l 803 (1278)
++|+.+|-.+-.. .+ ....+.+.|++-....+++..-.-. ..-..+|..++..+.....+++|.+.|
T Consensus 751 eeaek~yld~drr--------DL---Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 751 EEAEKLYLDADRR--------DL---AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred hHhhhhhhccchh--------hh---hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888877544221 11 1233445566655555554321111 112357888888888888888887777
Q ss_pred HHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 804 QKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGIL 883 (1278)
Q Consensus 804 ~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l 883 (1278)
...-.... ++..+.....++ -++.+...-|.+..+.-.+|..+...|--++|.+.|
T Consensus 820 ~~~~~~e~--------------------~~ecly~le~f~----~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 820 SYCGDTEN--------------------QIECLYRLELFG----ELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HhccchHh--------------------HHHHHHHHHhhh----hHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHH
Confidence 65321111 111111122222 234555667888888889999999999999998887
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 884 SLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKA 960 (1278)
Q Consensus 884 ~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 960 (1278)
-+. ..|. ........+++|.+|.++.++. .-|.-..+.-..+.-+...++.-+|++..+++
T Consensus 876 Lr~--s~pk------aAv~tCv~LnQW~~avelaq~~--------~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 876 LRR--SLPK------AAVHTCVELNQWGEAVELAQRF--------QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred Hhc--cCcH------HHHHHHHHHHHHHHHHHHHHhc--------cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 653 1221 1122334556677777665552 13333333333333444556666666666555
No 254
>KOG2610|consensus
Probab=97.00 E-value=0.055 Score=59.11 Aligned_cols=114 Identities=14% Similarity=0.012 Sum_probs=52.1
Q ss_pred cCCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCh---HHHHHHHHHHHHHcCCHHHHH
Q psy3224 947 NNEYERARRLLAKARASAPTP-RVMIQSAKLEWCLDNLERALQLLDEAIKV-FPDF---AKLWMMKGQIEEQKNLLDKAH 1021 (1278)
Q Consensus 947 ~g~~~~A~~~l~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~---~~~~~~la~~~~~~g~~~~A~ 1021 (1278)
.|++.+|....++.++..|+. ..|...-.+++..|+...-...+++.+-. +|+- ..+.-.++..+...|-+++|.
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 344444444444444444443 22222222344444444444444444443 3322 233333444445555555555
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 1022 DTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEK 1060 (1278)
Q Consensus 1022 ~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~k 1060 (1278)
+.-.++++++|.+.-+....+.++...+++.++.+...+
T Consensus 196 k~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 196 KQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555555555444444455555555555555554443
No 255
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.95 E-value=0.00069 Score=72.52 Aligned_cols=90 Identities=20% Similarity=0.300 Sum_probs=72.5
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHhc-----CCchHHHHHHHHHHHhCCC
Q psy3224 503 LLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARL-----QPVDTARAVIAQAVRHIPT 577 (1278)
Q Consensus 503 ~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~L-----~~~~~A~~~l~kaL~~~P~ 577 (1278)
+|.++....|+++..|...+......|.+..-..++.++|+.+|.++++|+..+.. .+.+.++.+|.++|..+|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 34556667788999999888887777888888899999999999999999765543 2566788899999999999
Q ss_pred CHHHHHHHHHchhhH
Q psy3224 578 SVRIWIKAADLETET 592 (1278)
Q Consensus 578 s~~lw~~~~~le~~~ 592 (1278)
++.+|.++..+|...
T Consensus 175 ~p~iw~eyfr~El~y 189 (435)
T COG5191 175 SPRIWIEYFRMELMY 189 (435)
T ss_pred CchHHHHHHHHHHHH
Confidence 999999988887643
No 256
>KOG2610|consensus
Probab=96.95 E-value=0.069 Score=58.37 Aligned_cols=159 Identities=11% Similarity=-0.087 Sum_probs=126.7
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC----HHHHHH
Q psy3224 898 LAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAS-APT----PRVMIQ 972 (1278)
Q Consensus 898 ~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-~p~----~~~~~~ 972 (1278)
..-+.+....|++.+|-...++.+ +..|.+..+|...-.++..+|+...-...+++++.. +++ ..+.-.
T Consensus 107 h~~aai~~~~g~~h~a~~~wdklL------~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gm 180 (491)
T KOG2610|consen 107 HAKAAILWGRGKHHEAAIEWDKLL------DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGM 180 (491)
T ss_pred hhhHHHhhccccccHHHHHHHHHH------HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHH
Confidence 334455667888999999999987 889999999999999999999999999999999887 655 234444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc
Q psy3224 973 SAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS----VPLWIMLANLEERR 1048 (1278)
Q Consensus 973 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~l~~~~ 1048 (1278)
++..+...|-|++|.+.-.++++++|.+.-+....+.++...+++.++.++..+--..-... ..-|-..+.++...
T Consensus 181 yaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ 260 (491)
T KOG2610|consen 181 YAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG 260 (491)
T ss_pred HHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc
Confidence 56677889999999999999999999999999999999999999999999776543221111 12233456677778
Q ss_pred CCHHHHHHHHHHHH
Q psy3224 1049 KMLIKARSVLEKGR 1062 (1278)
Q Consensus 1049 g~~~~A~~~l~kal 1062 (1278)
+.++.|+++|.+-+
T Consensus 261 aeye~aleIyD~ei 274 (491)
T KOG2610|consen 261 AEYEKALEIYDREI 274 (491)
T ss_pred cchhHHHHHHHHHH
Confidence 99999999998755
No 257
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.94 E-value=0.81 Score=57.04 Aligned_cols=236 Identities=16% Similarity=0.110 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--h-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPD--F-------AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS--- 1034 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--- 1034 (1278)
|.+.+..+.......++.+|..++.++...-|. . ...-...+.+....|+++.|.+..+.++..-|.+
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 455556666666677777777777766654332 1 2333445666677788888888888888777764
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHH--HHHHHHcCCHHHHHH--HHH----HHHHHCC
Q psy3224 1035 --VPLWIMLANLEERRKMLIKARSVLEKGRLRNP----NCAELWLAA--IRVEIRAGLKDIANT--MMA----KALQECP 1100 (1278)
Q Consensus 1035 --~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p----~~~~~~~~l--~~~~~~~g~~~~A~~--~~~----kal~~~P 1100 (1278)
..+...++.+..-.|++++|+.+...+.+... -.-.+|..+ +.++...|+...+.. .+. +-+...|
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33444567777778888888888777776632 222344444 336666773332222 222 1233344
Q ss_pred CcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCH-H
Q psy3224 1101 NAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDP-H 1179 (1278)
Q Consensus 1101 ~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~-~ 1179 (1278)
-++......+.++...-+++.+.....+.. .++.. -..+|-.+ .
T Consensus 575 ~~~f~~~~r~~ll~~~~r~~~~~~ear~~~-----------------------~~~~~------------~~~~~~~~~~ 619 (894)
T COG2909 575 RHEFLVRIRAQLLRAWLRLDLAEAEARLGI-----------------------EVGSV------------YTPQPLLSRL 619 (894)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhHHhhhcc-----------------------hhhhh------------cccchhHHHH
Confidence 444333333332211111222211111110 00000 00001111 1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-hh----HHHHHH--HHHHHhCCHHHHHHHHHH
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKIDPDL-GD----AWAYFY--KFEIINGTEETQAEVKKR 1237 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~-~d----~~~~l~--~~~~~~G~~~~A~~~l~k 1237 (1278)
+++.++.+++..|++++|...+.....+--+. +. +..... .+....|+...+...+.+
T Consensus 620 ~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 620 ALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 44688999999999999999999988753332 22 111122 223357888888877766
No 258
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.93 E-value=0.0017 Score=46.98 Aligned_cols=34 Identities=12% Similarity=0.407 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy3224 1178 PHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDL 1211 (1278)
Q Consensus 1178 ~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~ 1211 (1278)
+.+++.+|.+|+..|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3478999999999999999999999999999975
No 259
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.91 E-value=1.3 Score=51.14 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=25.5
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHH
Q psy3224 863 WLMGAKSKWLAGD-VPAARGILSLAFQANPNSEE 895 (1278)
Q Consensus 863 ~~~la~~~~~~g~-~~~A~~~l~~al~~~p~~~~ 895 (1278)
.+.-|.-+|+.|. -++|+.+++.+++..|.+..
T Consensus 382 L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~e 415 (549)
T PF07079_consen 382 LVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIE 415 (549)
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhccccHH
Confidence 4555777888877 78889999998888887653
No 260
>KOG1464|consensus
Probab=96.87 E-value=0.27 Score=52.27 Aligned_cols=195 Identities=10% Similarity=0.117 Sum_probs=96.2
Q ss_pred CCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCC
Q psy3224 874 GDVPAARGILSLAFQANPNS----EEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNE 949 (1278)
Q Consensus 874 g~~~~A~~~l~~al~~~p~~----~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~ 949 (1278)
.+.++|+..|++.+++.+.. -.++.....+..+++++++....|.+++..+.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIk------------------------ 96 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIK------------------------ 96 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH------------------------
Confidence 36777777777777777653 23445566677777777777777766653221
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHH----HHHHHHHHcCCHHHHHHH
Q psy3224 950 YERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKV--FPDFAKLWM----MKGQIEEQKNLLDKAHDT 1023 (1278)
Q Consensus 950 ~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~----~la~~~~~~g~~~~A~~~ 1023 (1278)
.++..+-+..........-....+.+--..+|+..+.. +..+..+|+ .+|.+|+..+.|.+-..+
T Consensus 97 ---------SAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KI 167 (440)
T KOG1464|consen 97 ---------SAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKI 167 (440)
T ss_pred ---------HHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHH
Confidence 11111111111111111111112222222233222221 112233332 355666666666666555
Q ss_pred HHHHHHhCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHH---HHH-HHHHHHHcCCH
Q psy3224 1024 FSQAIKKCPHS------------VPLWIMLANLEERRKMLIKARSVLEKGRLRNPNC--AEL---WLA-AIRVEIRAGLK 1085 (1278)
Q Consensus 1024 ~~~al~~~p~~------------~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~--~~~---~~~-l~~~~~~~g~~ 1085 (1278)
+.+.-..|... .++|..-.++|..+.+-.+-..+|++++.+...- |.+ ... -+.+..+.|++
T Consensus 168 lkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~f 247 (440)
T KOG1464|consen 168 LKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEF 247 (440)
T ss_pred HHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchH
Confidence 55555444321 2334444566666666666677777777654322 221 111 12356667777
Q ss_pred HHHHHHHHHHHHHCCC
Q psy3224 1086 DIANTMMAKALQECPN 1101 (1278)
Q Consensus 1086 ~~A~~~~~kal~~~P~ 1101 (1278)
++|..-|-.|++....
T Consensus 248 e~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 248 EKAHTDFFEAFKNYDE 263 (440)
T ss_pred HHHHhHHHHHHhcccc
Confidence 7777777666665433
No 261
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.067 Score=58.29 Aligned_cols=149 Identities=16% Similarity=0.081 Sum_probs=108.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHH
Q psy3224 748 TWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKS 827 (1278)
Q Consensus 748 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~ 827 (1278)
.-+.-+......|++..|...|..++...|.+..+...++.++...|+.+.|..+|...-........ .
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~-----------~ 204 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAA-----------H 204 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHH-----------H
Confidence 44555667788999999999999999999999999999999999999999999888764433333221 0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q psy3224 828 IWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPN--SEEIWLAAVKLES 905 (1278)
Q Consensus 828 ~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~la~l~~ 905 (1278)
.....+.+..+.....+. ..+++.+..+|++..+.+.+|..+...|+.+.|.+.+-..++.+-. +..+...+..+..
T Consensus 205 ~l~a~i~ll~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 205 GLQAQIELLEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred HHHHHHHHHHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 111122333333333222 3346667889999999999999999999999999999988887644 4555666666665
Q ss_pred hcC
Q psy3224 906 ENN 908 (1278)
Q Consensus 906 ~~g 908 (1278)
..|
T Consensus 284 ~~g 286 (304)
T COG3118 284 AFG 286 (304)
T ss_pred hcC
Confidence 444
No 262
>KOG2041|consensus
Probab=96.83 E-value=1.8 Score=51.94 Aligned_cols=164 Identities=13% Similarity=0.003 Sum_probs=94.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 615 AAVELEDPEDARILLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIID 694 (1278)
Q Consensus 615 al~~l~~~e~A~~~l~kal~~~P~~~~~w~~la~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~ 694 (1278)
++++.++|. .+++..+...++..+..---.-+-.|++++|.+.|-.+=+.+ ....++.+.|++-....+++
T Consensus 714 AFVrc~dY~-Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r 784 (1189)
T KOG2041|consen 714 AFVRCGDYA-GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIR 784 (1189)
T ss_pred hhhhhcccc-chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHH
Confidence 345555553 344555555554443322222344588999998886543221 23456777788877776665
Q ss_pred HHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 695 RALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALA 774 (1278)
Q Consensus 695 ~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 774 (1278)
..-.- .........|...+..+...-.++.|.+.|...-. .-.++.++.....|++ ++....
T Consensus 785 ~g~~d---~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-----------~e~~~ecly~le~f~~----LE~la~ 846 (1189)
T KOG2041|consen 785 NGGSD---DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-----------TENQIECLYRLELFGE----LEVLAR 846 (1189)
T ss_pred ccCCC---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------hHhHHHHHHHHHhhhh----HHHHHH
Confidence 43211 00011134666666666666666666666544311 1223445555544443 344455
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 775 TFPSKKSIWLRAAYFEKNHGTRESLETLLQK 805 (1278)
Q Consensus 775 ~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~ 805 (1278)
.-|.+..+.-.++.++...|.-++|.+.+-+
T Consensus 847 ~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 847 TLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 6788888899999999999998888877654
No 263
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.82 E-value=0.001 Score=48.03 Aligned_cols=33 Identities=12% Similarity=0.398 Sum_probs=29.0
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHH
Q psy3224 1200 WFNRTVKIDPDLGDAWAYFYKFEIINGTEETQA 1232 (1278)
Q Consensus 1200 ~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~ 1232 (1278)
+|++|++++|+++++|.+++.++...|+.++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 378899999999999999999999999988875
No 264
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.73 E-value=0.0023 Score=46.33 Aligned_cols=33 Identities=15% Similarity=0.454 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy3224 1179 HVLLAVSKLFWCENKNQKCREWFNRTVKIDPDL 1211 (1278)
Q Consensus 1179 ~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~ 1211 (1278)
.+++.+|.+|...|++++|+..|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 488999999999999999999999999999974
No 265
>KOG4642|consensus
Probab=96.71 E-value=0.0079 Score=62.68 Aligned_cols=87 Identities=15% Similarity=0.148 Sum_probs=57.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 977 EWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARS 1056 (1278)
Q Consensus 977 ~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~ 1056 (1278)
++....|..|+..|.+++.++|..+..|.+.+.++++..+++.+..-..+++++.|+.....+.++........+++|+.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence 33445566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHH
Q psy3224 1057 VLEKGRL 1063 (1278)
Q Consensus 1057 ~l~kal~ 1063 (1278)
.+.++..
T Consensus 100 ~Lqra~s 106 (284)
T KOG4642|consen 100 VLQRAYS 106 (284)
T ss_pred HHHHHHH
Confidence 6666644
No 266
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.71 E-value=2.5 Score=52.92 Aligned_cols=236 Identities=14% Similarity=0.031 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q psy3224 826 KSIWLRAAYFEKNHGTRESLETLLQKAVAHCPK--S-------EVLWLMGAKSKWLAGDVPAARGILSLAFQANPNS--- 893 (1278)
Q Consensus 826 ~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~--~-------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--- 893 (1278)
+.+.+..+-.......+.+|..++.++...-|. . ...--..|.+....|+++.|.++.+.++..-|.+
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 334445555556677788888888877665433 1 1333455667778899999999999999887764
Q ss_pred --HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHh----CC
Q psy3224 894 --EEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYE--RARRLLAKARAS----AP 965 (1278)
Q Consensus 894 --~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~--~A~~~l~~al~~----~p 965 (1278)
..+....+.+..-.|++.+|+.+...+..........+-...+.+..+.++..+|+.. +....|...... .|
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~ 574 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKP 574 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3455667777778899999998888877543322222222233334566777888332 223333322222 22
Q ss_pred C-HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--H
Q psy3224 966 T-PRVMIQSAKLEWC----LDNLERALQLLDEAIKVFPDFA---KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS--V 1035 (1278)
Q Consensus 966 ~-~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~ 1035 (1278)
. .......+.+++. .+...++...+.-.....|... -.++.++.++...|++++|...+........+. .
T Consensus 575 ~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~ 654 (894)
T COG2909 575 RHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYH 654 (894)
T ss_pred cchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCC
Confidence 2 1222222222222 2233333333433333444332 222467888888899999888887776544322 2
Q ss_pred HHHHHH---H--HHHHHcCCHHHHHHHHHHH
Q psy3224 1036 PLWIML---A--NLEERRKMLIKARSVLEKG 1061 (1278)
Q Consensus 1036 ~~~~~l---a--~l~~~~g~~~~A~~~l~ka 1061 (1278)
..|... + .+....|+...|..++.+.
T Consensus 655 ~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 655 VDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred chHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 222222 1 1223578888888887773
No 267
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.69 E-value=0.17 Score=58.15 Aligned_cols=126 Identities=13% Similarity=0.051 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-hCCCCHHHH
Q psy3224 826 KSIWLRAAYFEKNHGTRESLETLLQKAVAH----CPKSEVLWLMGAKSKWL---AGDVPAARGILSLAFQ-ANPNSEEIW 897 (1278)
Q Consensus 826 ~~~~l~~a~l~~~~g~~~~A~~~~~~al~~----~P~~~~~~~~la~~~~~---~g~~~~A~~~l~~al~-~~p~~~~~~ 897 (1278)
.++.+.+...++...+|+.-+.+.+.+-.. .++.+.+...+|.++.+ .|+.++|+.++..++. ..+.+++.+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 445666667778888899888888877665 44566778888988888 8999999999998544 445678889
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy3224 898 LAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLE 977 (1278)
Q Consensus 898 ~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~ 977 (1278)
..+|.+|... +. ...+. .....++|+..|.++....|+...-.+++.++
T Consensus 221 gL~GRIyKD~---------~~---------~s~~~-------------d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL 269 (374)
T PF13281_consen 221 GLLGRIYKDL---------FL---------ESNFT-------------DRESLDKAIEWYRKGFEIEPDYYSGINAATLL 269 (374)
T ss_pred HHHHHHHHHH---------HH---------HcCcc-------------chHHHHHHHHHHHHHHcCCccccchHHHHHHH
Confidence 8899887622 11 11111 11226778888888888877654445555555
Q ss_pred HHcCC
Q psy3224 978 WCLDN 982 (1278)
Q Consensus 978 ~~~g~ 982 (1278)
...|.
T Consensus 270 ~~~g~ 274 (374)
T PF13281_consen 270 MLAGH 274 (374)
T ss_pred HHcCC
Confidence 55554
No 268
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.66 E-value=0.091 Score=57.30 Aligned_cols=142 Identities=19% Similarity=0.080 Sum_probs=97.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhcCcHH
Q psy3224 833 AYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSE-EIWLAAVKLESENNEYE 911 (1278)
Q Consensus 833 a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-~~~~~la~l~~~~g~~~ 911 (1278)
+.-....|++.+|...|..++...|.+..+.+.++.+|...|+.+.|..++...-....+.. ........++.+.....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34445678899999999999999999999999999999999999999988877533332211 11112233444443333
Q ss_pred HHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcC
Q psy3224 912 RARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT---PRVMIQSAKLEWCLD 981 (1278)
Q Consensus 912 ~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~la~~~~~~g 981 (1278)
+...+-.++ ..+|++..+.+.++..+...|+.+.|.+.+-..+..+-. ...-..+..++...|
T Consensus 221 ~~~~l~~~~-------aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRL-------AADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHH-------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333332 678999999999999999999999999888888777532 344444444444444
No 269
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.49 E-value=0.0028 Score=45.79 Aligned_cols=34 Identities=29% Similarity=0.254 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHH
Q psy3224 503 LLKSVRETNPNHPPAWIASARLEEVTGKVQAARN 536 (1278)
Q Consensus 503 ~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~ 536 (1278)
+|+++++.+|+|+++|..+|.++...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999863
No 270
>KOG4642|consensus
Probab=96.34 E-value=0.036 Score=57.95 Aligned_cols=85 Identities=13% Similarity=0.073 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy3224 840 GTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAK 919 (1278)
Q Consensus 840 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~ 919 (1278)
..|+.|+..|.+++..+|..+..|...|.++++..+++.+..-..+++++.|+.+...+.++........++.|+..+.+
T Consensus 24 k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqr 103 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQR 103 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45677999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhh
Q psy3224 920 ARAQA 924 (1278)
Q Consensus 920 al~~~ 924 (1278)
+....
T Consensus 104 a~sl~ 108 (284)
T KOG4642|consen 104 AYSLL 108 (284)
T ss_pred HHHHH
Confidence 86443
No 271
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.29 E-value=0.092 Score=52.87 Aligned_cols=111 Identities=18% Similarity=0.199 Sum_probs=79.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhhhCCccc-cHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHH
Q psy3224 676 AAKLEEAHGNNAMVDKIIDRALSSLSANGVEI-NREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAE 754 (1278)
Q Consensus 676 la~~~~~~g~~~~A~~il~~al~~~~~~~~~~-~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~ 754 (1278)
.+......|+...+...+++++..+...-... ....|+....... +.. ...+...++.
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l------------~~~---------~~~~~~~l~~ 70 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERL------------REL---------YLDALERLAE 70 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHH------------HHH---------HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHH------------HHH---------HHHHHHHHHH
Confidence 35555677888999999999998776543222 1235654332222 111 1346677888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 755 SCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAV 807 (1278)
Q Consensus 755 ~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al 807 (1278)
.+...|+++.|+.++++++..+|.+..+|..+..++...|+...|...|++..
T Consensus 71 ~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 71 ALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999998854
No 272
>KOG1550|consensus
Probab=96.25 E-value=1.4 Score=54.90 Aligned_cols=274 Identities=13% Similarity=0.047 Sum_probs=160.5
Q ss_pred HHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh------CCCHHHHHHHHHHHH
Q psy3224 910 YERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESE-----NNEYERARRLLAKARAS------APTPRVMIQSAKLEW 978 (1278)
Q Consensus 910 ~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~-----~g~~~~A~~~l~~al~~------~p~~~~~~~la~~~~ 978 (1278)
...|..+++.+. .-.+......++.++.. ..+.+.|+.+|+.+... ...+...+.+|.+|.
T Consensus 228 ~~~a~~~~~~~a--------~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 228 LSEAFKYYREAA--------KLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYL 299 (552)
T ss_pred hhHHHHHHHHHH--------hhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHh
Confidence 345566666544 34455555555555543 35778888888877661 113445666777776
Q ss_pred Hc----C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Q psy3224 979 CL----D-NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN---LLDKAHDTFSQAIKKCPHSVPLWIMLANLEER--- 1047 (1278)
Q Consensus 979 ~~----g-~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~--- 1047 (1278)
.. . +...|..+|.++-.... +...+.+|.++..-. ++..|..+|..|.+.. +..+.+.++.++..
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYELGLG 375 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhCCC
Confidence 63 2 67889999988877643 556667777765544 5778999998887654 46778888888764
Q ss_pred -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCCCcHH---HHHHHHh-ccC-C---CC
Q psy3224 1048 -RKMLIKARSVLEKGRLRNPNCAELWLAAIRVE-IRAGLKDIANTMMAKALQECPNAGI---LWAEAIF-LEP-R---PQ 1117 (1278)
Q Consensus 1048 -~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~kal~~~P~~~~---~~~~~~~-~~~-~---~~ 1117 (1278)
..+...|..+|.++...+ ++.+...++.++ ...+.+..+...+..+...--.... .+...-. ... . ..
T Consensus 376 v~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~ 453 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIS 453 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhcccccccccccc
Confidence 457889999999998887 333223333322 2226666665555444333211111 1110000 000 0 11
Q ss_pred ChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhc----CC
Q psy3224 1118 RKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCE----NK 1193 (1278)
Q Consensus 1118 ~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~----g~ 1193 (1278)
+...+...+.++ ....++.+...||.+|+.- .+
T Consensus 454 ~~~~~~~~~~~a-------------------------------------------~~~g~~~a~~~lgd~y~~g~g~~~d 490 (552)
T KOG1550|consen 454 TLERAFSLYSRA-------------------------------------------AAQGNADAILKLGDYYYYGLGTGRD 490 (552)
T ss_pred chhHHHHHHHHH-------------------------------------------HhccCHHHHhhhcceeeecCCCCCC
Confidence 122222222222 2234455778888777533 46
Q ss_pred HHHHHHHHHHHHhhCCCChhHHHHHHHHHHH-hCC--HHHHHHHHHHHHHhCC
Q psy3224 1194 NQKCREWFNRTVKIDPDLGDAWAYFYKFEII-NGT--EETQAEVKKRCLAAEP 1243 (1278)
Q Consensus 1194 ~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~-~G~--~~~A~~~l~ka~~~~P 1243 (1278)
++.|..+|.++.... +....+++.++.. .|- ...|..++.++.+...
T Consensus 491 ~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 491 PEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDS 540 (552)
T ss_pred hHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCc
Confidence 888999999888766 7777777776643 222 4667777777766543
No 273
>KOG0890|consensus
Probab=96.21 E-value=9.7 Score=52.92 Aligned_cols=123 Identities=12% Similarity=0.087 Sum_probs=62.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH-HHhcCCCH-----HHHH-HHHhcCCchHHHHHHHHHHHhCCCCHHHHHHHHHc--hh
Q psy3224 520 ASARLEEVTGKVQAARNLIMKG-CEENQTSE-----DLWL-EAARLQPVDTARAVIAQAVRHIPTSVRIWIKAADL--ET 590 (1278)
Q Consensus 520 ~~arl~~~~g~~~~A~~~l~~a-l~~~P~s~-----~lwl-~~a~L~~~~~A~~~l~kaL~~~P~s~~lw~~~~~l--e~ 590 (1278)
.+++.-.+.+.|..|.-++++- ....+.+. .+.. .|+.+++++...-+... ....|+ +.-..... .+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s---l~~qil~~e~~g 1463 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS---LYQQILEHEASG 1463 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc---HHHHHHHHHhhc
Confidence 4556666666777777777763 11111111 1111 34556666554433332 111222 22222211 12
Q ss_pred hHHHHHHHHHHHHHhCCCCH----HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy3224 591 ETKAKRRVYRKALEHIPNSV----RLWKAAVELEDPEDARILLSRAVECCPTSVELWLAL 646 (1278)
Q Consensus 591 ~~~~A~~ll~rAle~~P~s~----~Lw~al~~l~~~e~A~~~l~kal~~~P~~~~~w~~l 646 (1278)
+..+|...|+++++..|+.+ .+.......+.+...+-..+-.....+....-|..+
T Consensus 1464 ~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~ 1523 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSL 1523 (2382)
T ss_pred cHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHH
Confidence 55677788888888888744 444455556666666666665555555555555443
No 274
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.18 E-value=3.1 Score=46.96 Aligned_cols=102 Identities=17% Similarity=0.033 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCC-------CH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 747 HTWMEDAESCANQG-AYECARAIYAQALATFPS-------KK-------SIWLRAAYFEKNHGTRESLETLLQKAVAHCP 811 (1278)
Q Consensus 747 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~~P~-------~~-------~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 811 (1278)
..++..|......+ +++.|...++++.+.... .. .+...++.++...+..+.
T Consensus 36 ~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~------------- 102 (278)
T PF08631_consen 36 RVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYES------------- 102 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHH-------------
Confidence 45666777777777 888888888888776311 00 123333344433333322
Q ss_pred chHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 812 KSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANP 891 (1278)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 891 (1278)
.++|..+++.+-...|+.+.++...-.++...++.+.+.+.+.+++...+
T Consensus 103 ------------------------------~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 103 ------------------------------VEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred ------------------------------HHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 23355566666666777777776666666667777777777777777654
No 275
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.11 E-value=0.0095 Score=64.11 Aligned_cols=91 Identities=21% Similarity=0.360 Sum_probs=62.1
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 989 LLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLAN-LEERRKMLIKARSVLEKGRLRNPN 1067 (1278)
Q Consensus 989 ~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-l~~~~g~~~~A~~~l~kal~~~p~ 1067 (1278)
.|.++-..+|+++.+|..++......+-+.+--.+|.++++.+|.++++|...+. -+...++++.++..|.+++..+|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 3445555667777777777776666677777777777777777777777775433 334567777777777777777777
Q ss_pred CHHHHHHHHHHH
Q psy3224 1068 CAELWLAAIRVE 1079 (1278)
Q Consensus 1068 ~~~~~~~l~~~~ 1079 (1278)
+|.+|..+.+++
T Consensus 175 ~p~iw~eyfr~E 186 (435)
T COG5191 175 SPRIWIEYFRME 186 (435)
T ss_pred CchHHHHHHHHH
Confidence 777777776654
No 276
>KOG0545|consensus
Probab=96.06 E-value=0.1 Score=54.80 Aligned_cols=71 Identities=17% Similarity=0.104 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 1001 AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 1001 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
..++.++.+|+...|++-++++.....+...|.+..+++..|......=+..+|..-|.+++.++|.-..+
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 45677777788888888888888888888888888888888877777777788888888888887765443
No 277
>KOG0376|consensus
Probab=96.03 E-value=0.01 Score=68.45 Aligned_cols=93 Identities=18% Similarity=0.117 Sum_probs=52.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 979 CLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVL 1058 (1278)
Q Consensus 979 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l 1058 (1278)
..+.++.|+..|.+++.++|++...+...+..+.+.+++..|+.-+.++++.+|.....|+..|......+.+.+|+..|
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l 95 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDL 95 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhCCCCHHH
Q psy3224 1059 EKGRLRNPNCAEL 1071 (1278)
Q Consensus 1059 ~kal~~~p~~~~~ 1071 (1278)
++...+.|+++.+
T Consensus 96 ~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 96 EKVKKLAPNDPDA 108 (476)
T ss_pred HHhhhcCcCcHHH
Confidence 5555555555554
No 278
>KOG0545|consensus
Probab=96.02 E-value=0.1 Score=54.77 Aligned_cols=71 Identities=8% Similarity=0.121 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPL 1037 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 1037 (1278)
..+++++++++...|+|-++++.....+...|.+..+++..|.+....=+..+|..-|..+++++|.-..+
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 36788899999999999999999999999999999999999999999999999999999999999965433
No 279
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.02 E-value=0.14 Score=51.50 Aligned_cols=62 Identities=13% Similarity=0.020 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1002 KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRL 1063 (1278)
Q Consensus 1002 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~ 1063 (1278)
.+...++..+...|++++|...+.+++..+|.+..+|..+..++...|+...|+..|+++..
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44555666667777777777777777777777777777777777777777777777766644
No 280
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.97 E-value=0.35 Score=56.33 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=19.3
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy3224 887 FQANPNSEEIWLAAVKLESENNEYERARRLLAKAR 921 (1278)
Q Consensus 887 l~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al 921 (1278)
+..+|-+.+.++.++.++..+|+...|..++++|+
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555555555555555555555544
No 281
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.92 E-value=0.019 Score=41.35 Aligned_cols=29 Identities=28% Similarity=0.405 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 1004 WMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032 (1278)
Q Consensus 1004 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 1032 (1278)
|+.+|.++...|++++|+..|++++.++|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 33444444444444444444444444444
No 282
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.90 E-value=0.21 Score=58.25 Aligned_cols=174 Identities=13% Similarity=0.024 Sum_probs=94.7
Q ss_pred HHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-
Q psy3224 993 AIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL- 1071 (1278)
Q Consensus 993 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~- 1071 (1278)
.++.+|-+.+.++.++.++..+|+...|.+++++|+-.........+.....-...|. ++--| ..+.|..+
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~---~rL~~-----~~~eNR~ff 103 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN---CRLDY-----RRPENRQFF 103 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc---cccCC-----ccccchHHH
Confidence 3456676677777777777777777777777777653322110000000000000000 00000 01233333
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHhcc-CCCCChhHHHHHHHHhccCcchhhhhhhhhhhhc
Q psy3224 1072 --WLAAIRVEIRAGLKDIANTMMAKALQECPN-AGILWAEAIFLE-PRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCEN 1147 (1278)
Q Consensus 1072 --~~~l~~~~~~~g~~~~A~~~~~kal~~~P~-~~~~~~~~~~~~-~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~ 1147 (1278)
...++..+.+.|-+..|.++.+-.+.++|. ++......++.+ .+.++++-.++.++....... .
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~-~----------- 171 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCY-R----------- 171 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhh-h-----------
Confidence 344555777888888888888888888888 665555555544 456677666665554321000 0
Q ss_pred ccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHhhCCC
Q psy3224 1148 KNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKN---------------QKCREWFNRTVKIDPD 1210 (1278)
Q Consensus 1148 ~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~---------------~~A~~~~~kal~~~P~ 1210 (1278)
.++... |...+.++.+++..++- +.|...+.+|+...|.
T Consensus 172 ---------------------~~~~~l---Pn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 172 ---------------------NWLSLL---PNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred ---------------------hhhhhC---ccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 000001 22666677777777776 8888888888887664
No 283
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.80 E-value=0.6 Score=47.96 Aligned_cols=115 Identities=17% Similarity=0.086 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 952 RARRLLAKARASAPT----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF---AKLWMMKGQIEEQKNLLDKAHDTF 1024 (1278)
Q Consensus 952 ~A~~~l~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~ 1024 (1278)
+.....++....++. ...-+.++..+...+++++|...++.++....+. ..+-..++.+....|.+++|...+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333444444444432 2334445556666666777766666666543332 244455666666677777766655
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 1025 SQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPN 1067 (1278)
Q Consensus 1025 ~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~ 1067 (1278)
....... -.+......|+++...|+-.+|+..|++++...++
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 4432110 01122334466667777777777777777666543
No 284
>KOG1464|consensus
Probab=95.79 E-value=1.2 Score=47.52 Aligned_cols=198 Identities=15% Similarity=0.167 Sum_probs=99.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHH
Q psy3224 760 GAYECARAIYAQALATFPSKK----SIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYF 835 (1278)
Q Consensus 760 g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l 835 (1278)
.+.++|+.-|+++++..|... .++..+..+....+++++....|.+++..
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTY-------------------------- 94 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTY-------------------------- 94 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHH--------------------------
Confidence 467889999999998887754 35666788888888888877766664421
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH----HHHHHHHhcCc
Q psy3224 836 EKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQA--NPNSEEIWL----AAVKLESENNE 909 (1278)
Q Consensus 836 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~----~la~l~~~~g~ 909 (1278)
...|+..+-. ......+........+.+--...|+..+.. +..+..+|+ .++.++...++
T Consensus 95 -------------IkSAVTrNyS-EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e 160 (440)
T KOG1464|consen 95 -------------IKSAVTRNYS-EKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGE 160 (440)
T ss_pred -------------HHHHHhcccc-HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHH
Confidence 1111111100 000000000111112222222333332221 122344442 46666666666
Q ss_pred HHHHHHHHHHHHHhhhh------hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCHHHHH----HHHHH
Q psy3224 910 YERARRLLAKARAQAGA------FQANPNSEEIWLAAVKLESENNEYERARRLLAKARASA---PTPRVMI----QSAKL 976 (1278)
Q Consensus 910 ~~~A~~~l~~al~~~~~------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~---p~~~~~~----~la~~ 976 (1278)
+.+-.+++.+.-..|+. ......-.++|..-+++|..+.+...-..+|++++... |.|.+.- .-|.+
T Consensus 161 ~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKM 240 (440)
T KOG1464|consen 161 YTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKM 240 (440)
T ss_pred HHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCcc
Confidence 66666666555433220 01111122334444556666666677777777777653 4432221 12345
Q ss_pred HHHcCCHHHHHHHHHHHHHhC
Q psy3224 977 EWCLDNLERALQLLDEAIKVF 997 (1278)
Q Consensus 977 ~~~~g~~~~A~~~l~~al~~~ 997 (1278)
+.+.|++++|..-|-.|++..
T Consensus 241 Hlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 241 HLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred ccccchHHHHHhHHHHHHhcc
Confidence 566677777766666666543
No 285
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.76 E-value=5.3 Score=46.18 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=88.1
Q ss_pred cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHH
Q psy3224 650 ETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQ 729 (1278)
Q Consensus 650 ~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~ 729 (1278)
|+.-.|-.-+..+++..|.+|..-...+.+.+..|.++.+.+.+..+-...... ..+.-...+.....|....|.
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~-----~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTT-----DSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCC-----chHHHHHHHhhhchhhHHHHH
Confidence 677777777888889999999998899999999999999988876655432211 122223334455667777777
Q ss_pred HHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy3224 730 ALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRA 786 (1278)
Q Consensus 730 ~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~l 786 (1278)
..-.-++...++.+. +....|-.....|-++++...+++.+..+|.....|...
T Consensus 378 s~a~~~l~~eie~~e---i~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~ 431 (831)
T PRK15180 378 STAEMMLSNEIEDEE---VLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNF 431 (831)
T ss_pred HHHHHHhccccCChh---heeeecccHHHHhHHHHHHHHHHHHhccCChhcccceee
Confidence 777777766555433 333334444556777888888888888887665555543
No 286
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.66 E-value=0.021 Score=41.19 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=11.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 1004 WMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032 (1278)
Q Consensus 1004 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 1032 (1278)
|+.+|.++...|++++|+..|+++++++|
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 34444444444444444444444444443
No 287
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.64 E-value=0.017 Score=41.65 Aligned_cols=32 Identities=16% Similarity=0.423 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKIDPDL 1211 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~ 1211 (1278)
+++.+|.+|...|++++|+.+|+++++++|+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 78889999999999999999999999988854
No 288
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.47 E-value=0.98 Score=46.46 Aligned_cols=94 Identities=20% Similarity=0.192 Sum_probs=65.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc
Q psy3224 939 AAVKLESENNEYERARRLLAKARASAPT----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQK 1014 (1278)
Q Consensus 939 ~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 1014 (1278)
.++..+...+++++|...++.++....+ +.+-..++.+....|.+++|+..+.......- .+......|+++...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~k 172 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHc
Confidence 4555666778888888888877765443 45666778888888888888877765432211 134455678888888
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q psy3224 1015 NLLDKAHDTFSQAIKKCPH 1033 (1278)
Q Consensus 1015 g~~~~A~~~~~~al~~~p~ 1033 (1278)
|+-.+|+..|.+++...+.
T Consensus 173 g~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 173 GDKQEARAAYEKALESDAS 191 (207)
T ss_pred CchHHHHHHHHHHHHccCC
Confidence 8888888888888887654
No 289
>KOG0376|consensus
Probab=95.46 E-value=0.022 Score=65.74 Aligned_cols=103 Identities=16% Similarity=0.048 Sum_probs=94.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy3224 1007 KGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKD 1086 (1278)
Q Consensus 1007 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~ 1086 (1278)
-+.-....+.++.|+..|.++++++|+++..+...+..+.+.+++..|+.-+.++++.+|.....|+..+......+.+.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 34445667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHH
Q psy3224 1087 IANTMMAKALQECPNAGILWAEA 1109 (1278)
Q Consensus 1087 ~A~~~~~kal~~~P~~~~~~~~~ 1109 (1278)
+|...|++.....|+++.+....
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHHHH
Confidence 99999999999999998776543
No 290
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.25 E-value=5.6 Score=43.14 Aligned_cols=168 Identities=14% Similarity=0.090 Sum_probs=76.4
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---HHHH
Q psy3224 899 AAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAS-----APT---PRVM 970 (1278)
Q Consensus 899 ~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~---~~~~ 970 (1278)
.++.++.+.|.+.+|+......+.-...+...|.-..++..-..+|....+..++...+..+... +|. ..+-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 34444555555555555554444322222333333444444444555555555555555444433 232 2333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC---ChHHHHHHHHHHH---HHcCCHHHHHHHHH--HHHH-hCCCCHHHHHHH
Q psy3224 971 IQSAKLEWCLDNLERALQLLDEAIKVFP---DFAKLWMMKGQIE---EQKNLLDKAHDTFS--QAIK-KCPHSVPLWIML 1041 (1278)
Q Consensus 971 ~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~~~~~~la~~~---~~~g~~~~A~~~~~--~al~-~~p~~~~~~~~l 1041 (1278)
+.-|.+.+...+|..|..+|-++++-+- .+..+...+-.++ ...+..++...++. ..++ .......+....
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~av 289 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAV 289 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHH
Confidence 3334455566677777777777776443 2222222211111 12233333333222 1122 122234455555
Q ss_pred HHHHH--HcCCHHHHHHHHHHHHHhCC
Q psy3224 1042 ANLEE--RRKMLIKARSVLEKGRLRNP 1066 (1278)
Q Consensus 1042 a~l~~--~~g~~~~A~~~l~kal~~~p 1066 (1278)
+..+. ...++..|+..|+.-+..+|
T Consensus 290 aea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 290 AEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 55554 24566777777766655544
No 291
>KOG1308|consensus
Probab=95.12 E-value=0.019 Score=63.30 Aligned_cols=118 Identities=17% Similarity=0.069 Sum_probs=88.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 978 WCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSV 1057 (1278)
Q Consensus 978 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~ 1057 (1278)
+..|.+++|++.|..++.++|.+..++...+.++..++++..|+.-+..++.++|+...-+-..+.....+|++.+|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999998888888888888889999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 1058 LEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKAL 1096 (1278)
Q Consensus 1058 l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal 1096 (1278)
|..+++++-+...- ..+-.+.-..+..++-...+.+..
T Consensus 205 l~~a~kld~dE~~~-a~lKeV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 205 LALACKLDYDEANS-ATLKEVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHhccccHHHH-HHHHHhccchhhhhhchhHHHHHH
Confidence 99998876433211 222233333444444444444443
No 292
>KOG1463|consensus
Probab=95.04 E-value=5 Score=44.69 Aligned_cols=168 Identities=20% Similarity=0.159 Sum_probs=93.6
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC---HHHH
Q psy3224 899 AAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASA-----PT---PRVM 970 (1278)
Q Consensus 899 ~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-----p~---~~~~ 970 (1278)
.++.+|...++|.+|+.+....+.-...+..-+.-.++...-...|....+..+|...+..|.... |. ..+-
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 455555666666666655555543222222223333344444455556666666666666555432 21 2334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC---ChHHHHH---HHHHHHHHcCCHHHHHHHH--HHHHHhCCCCHHHHHHHH
Q psy3224 971 IQSAKLEWCLDNLERALQLLDEAIKVFP---DFAKLWM---MKGQIEEQKNLLDKAHDTF--SQAIKKCPHSVPLWIMLA 1042 (1278)
Q Consensus 971 ~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~~~~~---~la~~~~~~g~~~~A~~~~--~~al~~~p~~~~~~~~la 1042 (1278)
+.-|.++....+|..|..+|-++++-+. +...+.. .+..+-...+..++-..++ ..+++....+..+...++
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavA 292 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVA 292 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHH
Confidence 4445566666888888888888887543 1122222 2223334556666544443 345555556677777777
Q ss_pred HHHHH--cCCHHHHHHHHHHHHHhCC
Q psy3224 1043 NLEER--RKMLIKARSVLEKGRLRNP 1066 (1278)
Q Consensus 1043 ~l~~~--~g~~~~A~~~l~kal~~~p 1066 (1278)
..+.+ ..+|+.|+.-|..-+..+|
T Consensus 293 eA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 293 EAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 77763 5567788887777766655
No 293
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.87 E-value=0.043 Score=39.06 Aligned_cols=32 Identities=22% Similarity=0.428 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKIDPDL 1211 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~ 1211 (1278)
+++.+|.++...|++++|+..|+++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 67888999988999999999999999888874
No 294
>KOG2422|consensus
Probab=94.68 E-value=1.7 Score=51.45 Aligned_cols=167 Identities=12% Similarity=0.027 Sum_probs=86.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCH
Q psy3224 871 WLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEY 950 (1278)
Q Consensus 871 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~ 950 (1278)
.....|++|...|.-+....+.+.-+. .+...|-+...++.++.+...+|+.
T Consensus 249 ~hs~sYeqaq~~F~~av~~~d~n~v~~----------------------------lL~ssPYHvdsLLqva~~~r~qgD~ 300 (665)
T KOG2422|consen 249 EHSNSYEQAQRDFYLAVIVHDPNNVLI----------------------------LLISSPYHVDSLLQVADIFRFQGDR 300 (665)
T ss_pred ecchHHHHHHHHHHHHHhhcCCcceee----------------------------eeccCCcchhHHHHHHHHHHHhcch
Confidence 345678888888888877553321100 0134566666666666666666666
Q ss_pred HHHHHHHHHHHHh-----CCC----------------H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHH
Q psy3224 951 ERARRLLAKARAS-----APT----------------P----RVMIQSAKLEWCLDNLERALQLLDEAIKVFPD-FAKLW 1004 (1278)
Q Consensus 951 ~~A~~~l~~al~~-----~p~----------------~----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~ 1004 (1278)
+.|..++++++=. .|. . .+++.+...+...|-+..|.+++.-.++++|. +|...
T Consensus 301 e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~ 380 (665)
T KOG2422|consen 301 EMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGI 380 (665)
T ss_pred hhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhH
Confidence 6666666655421 111 1 12222333344556666666666666666665 55555
Q ss_pred HHHHHHH-HHcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC
Q psy3224 1005 MMKGQIE-EQKNLLDKAHDTFSQA-----IKKCPHSVPLWIMLANLEERRKM---LIKARSVLEKGRLRNP 1066 (1278)
Q Consensus 1005 ~~la~~~-~~~g~~~~A~~~~~~a-----l~~~p~~~~~~~~la~l~~~~g~---~~~A~~~l~kal~~~p 1066 (1278)
..+..+| .+..+|+=-++.++.. +...|+-+ .-..+|.+|..... -..|...+.+|+...|
T Consensus 381 l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 381 LYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 5555544 3444444444444433 22233322 22344444444333 3455555555555554
No 295
>KOG3824|consensus
Probab=94.60 E-value=0.13 Score=55.47 Aligned_cols=66 Identities=17% Similarity=0.250 Sum_probs=61.3
Q ss_pred cccchHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHh
Q psy3224 492 GDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAAR 557 (1278)
Q Consensus 492 ~~~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~ 557 (1278)
-+.|+.++|..+|+.++...|.+++++++.|.+.+..++.-+|-.+|-+|+...|.+.+++....+
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 355999999999999999999999999999999998899999999999999999999998877665
No 296
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.49 E-value=11 Score=42.80 Aligned_cols=60 Identities=20% Similarity=0.140 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy3224 985 RALQLLDEAIKVFPDFAKLWMMKGQIEEQ----KNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRK 1049 (1278)
Q Consensus 985 ~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g 1049 (1278)
.|...|.++.... ++.....+|.+|.. ..++.+|..+|.++.+... ...++.++ ++...|
T Consensus 173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 5566666555544 45556666655533 2366667777766666554 55555555 444333
No 297
>KOG0551|consensus
Probab=94.45 E-value=1.2 Score=49.34 Aligned_cols=93 Identities=13% Similarity=0.099 Sum_probs=63.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy3224 939 AAVKLESENNEYERARRLLAKARAS-APT----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQ 1013 (1278)
Q Consensus 939 ~la~~~~~~g~~~~A~~~l~~al~~-~p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 1013 (1278)
.-|.-|+...+|..|+..|.+.+.. +++ ..+|.+.+-+....|+|..|+.-..+++...|.+..+++.-+.++..
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 4455566677777777777777765 332 35666666677777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHhC
Q psy3224 1014 KNLLDKAHDTFSQAIKKC 1031 (1278)
Q Consensus 1014 ~g~~~~A~~~~~~al~~~ 1031 (1278)
+..+..|..+.+..+..+
T Consensus 166 Le~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHhhhhhhh
Confidence 777777777666665443
No 298
>KOG1538|consensus
Probab=94.44 E-value=5.5 Score=47.70 Aligned_cols=24 Identities=21% Similarity=0.433 Sum_probs=15.7
Q ss_pred CCchh-hhhhhhhhhcccCChHHhh
Q psy3224 186 RPKIQ-QQFSDLKRGLVTVSMDEWK 209 (1278)
Q Consensus 186 ~~~i~-~qf~~lkr~l~~~~~~~w~ 209 (1278)
+..|| --|...-..|++-|..|+.
T Consensus 93 ~D~IQCMsFNP~~h~LasCsLsdFg 117 (1081)
T KOG1538|consen 93 NDAIQCMSFNPITHQLASCSLSDFG 117 (1081)
T ss_pred CCeeeEeecCchHHHhhhcchhhcc
Confidence 33455 3467777778888888763
No 299
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=94.38 E-value=4.6 Score=45.88 Aligned_cols=188 Identities=15% Similarity=0.110 Sum_probs=110.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cC
Q psy3224 978 WCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQ----KNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER----RK 1049 (1278)
Q Consensus 978 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~----~g 1049 (1278)
...+++..+...+..+-.. ..+.....++.+|.. ..+..+|..+|..+. ...++...+.++.++.. ..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~ 127 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPL 127 (292)
T ss_pred cccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCccc
Confidence 3456788888888777662 223566666666644 235777888887443 34456677778877775 44
Q ss_pred CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHH
Q psy3224 1050 MLIKARSVLEKGRLRNPNCA-ELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKK 1128 (1278)
Q Consensus 1050 ~~~~A~~~l~kal~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k 1128 (1278)
+..+|..+|+++....-... .....++.++..-. .. ..+ ......|...|.+
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~-~~-------~~~-------------------~~~~~~A~~~~~~ 180 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGL-QA-------LAV-------------------AYDDKKALYLYRK 180 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcCh-hh-------hcc-------------------cHHHHhHHHHHHH
Confidence 77888888888877644332 22333333333221 00 000 0011234444444
Q ss_pred hccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q psy3224 1129 CEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWC----ENKNQKCREWFNRT 1204 (1278)
Q Consensus 1129 ~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~----~g~~~~A~~~~~ka 1204 (1278)
+... .++...+.+|.+|.. ..++.+|..||.++
T Consensus 181 aa~~-------------------------------------------~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~A 217 (292)
T COG0790 181 AAEL-------------------------------------------GNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKA 217 (292)
T ss_pred HHHh-------------------------------------------cCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHH
Confidence 4110 022377888877743 45899999999999
Q ss_pred HhhCCCChhHHHHHHHHHHHhC---------------CHHHHHHHHHHHHHhC
Q psy3224 1205 VKIDPDLGDAWAYFYKFEIING---------------TEETQAEVKKRCLAAE 1242 (1278)
Q Consensus 1205 l~~~P~~~d~~~~l~~~~~~~G---------------~~~~A~~~l~ka~~~~ 1242 (1278)
.+... +..+..++ ++...| +...|...+.+....-
T Consensus 218 a~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 218 AEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred HHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 98776 77888887 666666 5555555555555443
No 300
>KOG1550|consensus
Probab=94.28 E-value=20 Score=44.86 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC--CHHHH
Q psy3224 1016 LLDKAHDTFSQAIKKCPHSVPLWIMLANLEERR----KMLIKARSVLEKGRLRNPNCAELWLAAIRVEIR-AG--LKDIA 1088 (1278)
Q Consensus 1016 ~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~----g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~-~g--~~~~A 1088 (1278)
+...+...+.++.. ..+..+...++.++..- .+++.|..+|.++.... ......++.++.. .| ....|
T Consensus 454 ~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a 528 (552)
T KOG1550|consen 454 TLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLA 528 (552)
T ss_pred chhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHH
Confidence 34444444444432 22345555555555432 34666666666665554 4444455544322 11 14556
Q ss_pred HHHHHHHHHHCC
Q psy3224 1089 NTMMAKALQECP 1100 (1278)
Q Consensus 1089 ~~~~~kal~~~P 1100 (1278)
..++.++.+...
T Consensus 529 ~~~~~~~~~~~~ 540 (552)
T KOG1550|consen 529 KRYYDQASEEDS 540 (552)
T ss_pred HHHHHHHHhcCc
Confidence 666665555443
No 301
>KOG0551|consensus
Probab=94.22 E-value=0.25 Score=54.41 Aligned_cols=100 Identities=15% Similarity=0.048 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPD----FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLAN 1043 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 1043 (1278)
.-+-.-|+-|+..++|..|+..|.+.|+..-. +..+|.+.+-+....|+|..|+.-..+++..+|.+..+++.-|.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 44555688889999999999999999986433 35778888999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 1044 LEERRKMLIKARSVLEKGRLRNPN 1067 (1278)
Q Consensus 1044 l~~~~g~~~~A~~~l~kal~~~p~ 1067 (1278)
++..+..+..|..|.+..+.++..
T Consensus 162 c~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999999888776543
No 302
>KOG1538|consensus
Probab=93.77 E-value=7.6 Score=46.59 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=54.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCC-cH
Q psy3224 856 CPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPN-SE 934 (1278)
Q Consensus 856 ~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~-~~ 934 (1278)
+....+.....+..+.....+.-|.++|.+.-. ...+.+++...++|.+|..+.++ .|. -+
T Consensus 743 d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~----------hPe~~~ 804 (1081)
T KOG1538|consen 743 DKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEK----------HPEFKD 804 (1081)
T ss_pred chhhhhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhh----------Cccccc
Confidence 333444455555555666666666666665411 23445566677888888776654 343 34
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 935 EIWLAAVKLESENNEYERARRLLAKA 960 (1278)
Q Consensus 935 ~~~~~la~~~~~~g~~~~A~~~l~~a 960 (1278)
.+++.+++.+....++++|.+.|.++
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHHh
Confidence 56777888888888888887777654
No 303
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.69 E-value=0.12 Score=37.08 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=11.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 1004 WMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032 (1278)
Q Consensus 1004 ~~~la~~~~~~g~~~~A~~~~~~al~~~p 1032 (1278)
|+.+|.++...|++++|...|+++++.+|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 33344444444444444444444444333
No 304
>KOG3824|consensus
Probab=93.64 E-value=0.19 Score=54.29 Aligned_cols=69 Identities=20% Similarity=0.287 Sum_probs=58.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 975 KLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLAN 1043 (1278)
Q Consensus 975 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 1043 (1278)
.-....|+.++|..+|+.++.+.|.+++++..+|.+....++.-+|-.+|-+++...|.+.+++.+.++
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 334577889999999999999999999999999999888888999999999999999988887776543
No 305
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.62 E-value=0.12 Score=36.72 Aligned_cols=33 Identities=18% Similarity=0.023 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q psy3224 516 PAWIASARLEEVTGKVQAARNLIMKGCEENQTS 548 (1278)
Q Consensus 516 ~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s 548 (1278)
++++.+|.++...|++++|+..|+++++..|+|
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 578889999999999999999999999999986
No 306
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=13 Score=40.47 Aligned_cols=170 Identities=13% Similarity=0.093 Sum_probs=96.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHH
Q psy3224 863 WLMGAKSKWLAGDVPAARGILSLAFQAN------PNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEI 936 (1278)
Q Consensus 863 ~~~la~~~~~~g~~~~A~~~l~~al~~~------p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~ 936 (1278)
-..++.++...|.|.+|+......+... |.-..++..-..+|....+..++...+..|..... -.-+|....+
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~An-s~YCPpqlqa 206 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLAN-SAYCPPQLQA 206 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhh-ccCCCHHHHH
Confidence 3556677788888888888877665421 23355666777777777888887777776653211 1234554444
Q ss_pred HHH--HHHHHHHcCCHHHHHHHHHHHHHhCCC----HHHHHH---HHHHHHHcCCHHHHHHHHH--HHHH-hCCChHHHH
Q psy3224 937 WLA--AVKLESENNEYERARRLLAKARASAPT----PRVMIQ---SAKLEWCLDNLERALQLLD--EAIK-VFPDFAKLW 1004 (1278)
Q Consensus 937 ~~~--la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~---la~~~~~~g~~~~A~~~l~--~al~-~~p~~~~~~ 1004 (1278)
-.. -|.+.+...+|..|-.+|-.+++-... ..+... +...-...+..++...++. ..++ .......+.
T Consensus 207 ~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am 286 (421)
T COG5159 207 QLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAM 286 (421)
T ss_pred HHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHH
Confidence 332 234555677889999999888876543 111111 1111122344444444432 2222 222334555
Q ss_pred HHHHHHHH--HcCCHHHHHHHHHHHHHhCCC
Q psy3224 1005 MMKGQIEE--QKNLLDKAHDTFSQAIKKCPH 1033 (1278)
Q Consensus 1005 ~~la~~~~--~~g~~~~A~~~~~~al~~~p~ 1033 (1278)
...+..+. ...+|..|...|..-+..+|-
T Consensus 287 ~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 287 LAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred HHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 55666553 244677888888777666653
No 307
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.47 E-value=0.065 Score=39.27 Aligned_cols=28 Identities=11% Similarity=0.404 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKI 1207 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~ 1207 (1278)
++..||.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678899999999999999999996654
No 308
>KOG3807|consensus
Probab=93.28 E-value=9.8 Score=42.04 Aligned_cols=52 Identities=19% Similarity=0.251 Sum_probs=26.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy3224 868 KSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKAR 921 (1278)
Q Consensus 868 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al 921 (1278)
+..++..+..+-++.-..+++++|....++..++.-+ .--..+|.++|++++
T Consensus 192 Q~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~AL 243 (556)
T KOG3807|consen 192 QKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQAL 243 (556)
T ss_pred HHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHH
Confidence 3444445555555555556666666665555555322 233445555555554
No 309
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.06 E-value=0.37 Score=38.69 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHH
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKF 1221 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~ 1221 (1278)
.++.+|..+++.|+|++|+.+.+.+|+..|+|..+......+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 578899999999999999999999999999998876655333
No 310
>KOG2422|consensus
Probab=93.05 E-value=5.5 Score=47.50 Aligned_cols=134 Identities=17% Similarity=0.105 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----C----------------CChH---HHHHHHHHHHHHcCCHHHHHH
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKV-----F----------------PDFA---KLWMMKGQIEEQKNLLDKAHD 1022 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~-----~----------------p~~~---~~~~~la~~~~~~g~~~~A~~ 1022 (1278)
...++.++.++..+|+.+.|..+.+++|=. . |.+- .+++.+.+.+.+.|-+.-|.+
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E 363 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALE 363 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 477888899999999998888888877632 1 2222 233334455677888999999
Q ss_pred HHHHHHHhCCC-CHHHHHHHHHHHH-HcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q psy3224 1023 TFSQAIKKCPH-SVPLWIMLANLEE-RRKMLIKARSVLEKG-----RLRNPNCAELWLAAIRVEIRAGL---KDIANTMM 1092 (1278)
Q Consensus 1023 ~~~~al~~~p~-~~~~~~~la~l~~-~~g~~~~A~~~l~ka-----l~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~ 1092 (1278)
+.+-.+.++|. ++.....+..+|. +..+|.=-+.+++.. +...|+.+.. ..++.++..... ...|...+
T Consensus 364 ~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS-~AlA~f~l~~~~~~~rqsa~~~l 442 (665)
T KOG2422|consen 364 WCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYS-LALARFFLRKNEEDDRQSALNAL 442 (665)
T ss_pred HHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHH-HHHHHHHHhcCChhhHHHHHHHH
Confidence 99999999998 7777777776665 566666666666555 3344666554 566666665554 56788888
Q ss_pred HHHHHHCCC
Q psy3224 1093 AKALQECPN 1101 (1278)
Q Consensus 1093 ~kal~~~P~ 1101 (1278)
.+|+..+|.
T Consensus 443 ~qAl~~~P~ 451 (665)
T KOG2422|consen 443 LQALKHHPL 451 (665)
T ss_pred HHHHHhCcH
Confidence 888888874
No 311
>PRK10941 hypothetical protein; Provisional
Probab=92.85 E-value=0.89 Score=50.46 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy3224 970 MIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLA 1042 (1278)
Q Consensus 970 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 1042 (1278)
..++-.++...++++.|+.+.+..+...|+++.-+.-.|.+|.+.|.+..|..-++..++.||+++.+-....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 3344456667777777777777777777777777777777777777777777777777777777765544433
No 312
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=92.74 E-value=0.17 Score=35.77 Aligned_cols=26 Identities=31% Similarity=0.541 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHH
Q psy3224 531 VQAARNLIMKGCEENQTSEDLWLEAA 556 (1278)
Q Consensus 531 ~~~A~~~l~~al~~~P~s~~lwl~~a 556 (1278)
++.|+.+|++++..+|.++.+|+.++
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 34444444444444444444444443
No 313
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.62 E-value=37 Score=43.03 Aligned_cols=123 Identities=8% Similarity=-0.024 Sum_probs=64.1
Q ss_pred HHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 732 IRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCP 811 (1278)
Q Consensus 732 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 811 (1278)
+...+...++.|....+-...-..+...+++..-+.++ ...|.+....+.++......|+.++|.....++-....
T Consensus 85 v~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~ 160 (644)
T PRK11619 85 VTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK 160 (644)
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC
Confidence 34444444444443333333334444556666555433 23477777778888888888887766555554322221
Q ss_pred chHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 812 KSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLA 886 (1278)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~a 886 (1278)
.. .+.+-.+|....+..--....+..........|+...|..+...+
T Consensus 161 ~~----------------------------p~~cd~l~~~~~~~g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l 207 (644)
T PRK11619 161 SL----------------------------PNACDKLFSVWQQSGKQDPLAYLERIRLAMKAGNTGLVTYLAKQL 207 (644)
T ss_pred CC----------------------------ChHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhc
Confidence 11 122445555554333333333444455556677777776655543
No 314
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=92.61 E-value=1.2 Score=41.60 Aligned_cols=105 Identities=17% Similarity=0.142 Sum_probs=68.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCchHHHHHhhcccchHHHHH
Q psy3224 752 DAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAH-CPKSEVLWLMGAKSNKKSIWL 830 (1278)
Q Consensus 752 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~~~~~~~~~~~~~~~~~l 830 (1278)
.|..++..|++-+|+++.+..+..++++...|. +...+|.. +++.+... +|+....++.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~----lh~~QG~i-----f~~lA~~ten~d~k~~yLl----------- 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWL----LHRLQGTI-----FYKLAKKTENPDVKFRYLL----------- 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHH----HHHHHhHH-----HHHHHHhccCchHHHHHHH-----------
Confidence 356778889999999999999999888876652 12222221 11222221 3332221111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 831 RAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQA 889 (1278)
Q Consensus 831 ~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 889 (1278)
.+++.|.++....|......+.+|.-+-....|+++..-.++++..
T Consensus 62 -------------~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 -------------GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -------------HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 1788888888888888888888887766666777777777777654
No 315
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.47 E-value=0.19 Score=34.68 Aligned_cols=32 Identities=13% Similarity=0.403 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKIDPDL 1211 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~ 1211 (1278)
+++.+|.++...+++++|..+|+++++..|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 67888999999999999999999999888753
No 316
>KOG1308|consensus
Probab=92.34 E-value=0.14 Score=56.70 Aligned_cols=85 Identities=22% Similarity=0.138 Sum_probs=52.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q psy3224 837 KNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRL 916 (1278)
Q Consensus 837 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~ 916 (1278)
...|.++.|++.|..++.++|....++...+.+++.+++...|+.-|..++.++|++..-|...+.....+|++.+|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 34566666666666666666666666666666666666666666666666666666655555555555555555555555
Q ss_pred HHHHH
Q psy3224 917 LAKAR 921 (1278)
Q Consensus 917 l~~al 921 (1278)
|..+.
T Consensus 205 l~~a~ 209 (377)
T KOG1308|consen 205 LALAC 209 (377)
T ss_pred HHHHH
Confidence 55553
No 317
>PRK10941 hypothetical protein; Provisional
Probab=92.34 E-value=0.78 Score=50.90 Aligned_cols=65 Identities=14% Similarity=0.026 Sum_probs=38.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Q psy3224 1041 LANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGIL 1105 (1278)
Q Consensus 1041 la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~ 1105 (1278)
+-.++.+.++++.|+.+.+..+.+.|+++.-|...|.++.++|.+..|..-++..++.+|+++.+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 33445556666666666666666666666656666666666666666666666666666665543
No 318
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=92.21 E-value=2.1 Score=41.71 Aligned_cols=56 Identities=18% Similarity=0.319 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 640 VELWLALARLETYENARKVLNKAREN--IPTDRQIWTTAAKLEEAHGNNAMVDKIIDRAL 697 (1278)
Q Consensus 640 ~~~w~~la~l~~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~il~~al 697 (1278)
..+|+.++++-. ++..+|..+... .-.....|...|.+++..|++.+|.++|+.++
T Consensus 69 lkiWi~ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 69 LKIWIKYADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 356888887666 777777777664 34467888889999999999999999988764
No 319
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=92.00 E-value=1.1 Score=40.69 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=53.1
Q ss_pred hhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--hhHHHHHHHHHHHhCCHHHHHHHHHH
Q psy3224 1168 VDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDL--GDAWAYFYKFEIINGTEETQAEVKKR 1237 (1278)
Q Consensus 1168 ~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~--~d~~~~l~~~~~~~G~~~~A~~~l~k 1237 (1278)
.+.++.+|+|+.+.+.+|..+...|+++.|++.+-.++..++++ ..+...+..+...+|..+....-+++
T Consensus 12 ~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 12 EAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 45668899999999999999999999999999999999998877 45777777777788876544444433
No 320
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=91.95 E-value=0.29 Score=34.47 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Q psy3224 495 NDIKKARLLLKSVRETNPNHPPAWIASARLE 525 (1278)
Q Consensus 495 g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~ 525 (1278)
|+++.|+.+|++++..+|.+++.|+..+.+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4678899999999999999999999998775
No 321
>KOG1463|consensus
Probab=91.94 E-value=25 Score=39.48 Aligned_cols=169 Identities=14% Similarity=0.041 Sum_probs=107.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC---C---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHH
Q psy3224 863 WLMGAKSKWLAGDVPAARGILSLAFQAN---P---NSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEI 936 (1278)
Q Consensus 863 ~~~la~~~~~~g~~~~A~~~l~~al~~~---p---~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~ 936 (1278)
-..++.+|...++|.+|+......++.- . .-.++...-...|....+..+|...+..|.....++ .+|....+
T Consensus 131 earli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai-YcpPqlQa 209 (411)
T KOG1463|consen 131 EARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI-YCPPQLQA 209 (411)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc-ccCHHHHH
Confidence 3567778888999999998877776432 1 124566666777888889999988888876432211 23333222
Q ss_pred HH--HHHHHHHHcCCHHHHHHHHHHHHHhCCC----HH---HHHHHHHHHHHcCCHHHHHHHH--HHHHHhCCChHHHHH
Q psy3224 937 WL--AAVKLESENNEYERARRLLAKARASAPT----PR---VMIQSAKLEWCLDNLERALQLL--DEAIKVFPDFAKLWM 1005 (1278)
Q Consensus 937 ~~--~la~~~~~~g~~~~A~~~l~~al~~~p~----~~---~~~~la~~~~~~g~~~~A~~~l--~~al~~~p~~~~~~~ 1005 (1278)
-. .-|.++....+|..|..+|-.+++-+.+ .. .+..+..+-...+..++...++ ..+++.......+..
T Consensus 210 ~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~Amk 289 (411)
T KOG1463|consen 210 TLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMK 289 (411)
T ss_pred HHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHH
Confidence 22 3344555668899999999998876532 12 2222223334566677665555 445565555677777
Q ss_pred HHHHHHHH--cCCHHHHHHHHHHHHHhCC
Q psy3224 1006 MKGQIEEQ--KNLLDKAHDTFSQAIKKCP 1032 (1278)
Q Consensus 1006 ~la~~~~~--~g~~~~A~~~~~~al~~~p 1032 (1278)
..+..+.+ ..+|+.|..-|..-+..+|
T Consensus 290 avAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 290 AVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 77777643 4478888888887777666
No 322
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.92 E-value=5.9 Score=39.88 Aligned_cols=75 Identities=19% Similarity=0.126 Sum_probs=45.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy3224 976 LEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKM 1050 (1278)
Q Consensus 976 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~ 1050 (1278)
+-...++.+.+..++...--+.|..+.+-..-|.+++..|++.+|+.+|+.+....|..+..--.++.++...|+
T Consensus 19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 334455666666666666666666666666666666666666666666666666666555555555555555554
No 323
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.77 E-value=11 Score=38.18 Aligned_cols=92 Identities=12% Similarity=-0.043 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHH
Q psy3224 972 QSAKLEWCLDNLERALQLLDEAIKVFPDF----AKLWMMKGQIEEQKNLLDKAHDTFSQAI-KKCPHSVPLWIMLANLEE 1046 (1278)
Q Consensus 972 ~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~l~~ 1046 (1278)
..+.+....|+...|+..|..+-...|-- ..+.+.-+.++...|.|+......+..- ..+|-...+...|+...+
T Consensus 99 r~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ 178 (221)
T COG4649 99 RAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAY 178 (221)
T ss_pred HHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHH
Confidence 33444444444444544444444332210 1122333344455555555444333221 122223334445566666
Q ss_pred HcCCHHHHHHHHHHHHH
Q psy3224 1047 RRKMLIKARSVLEKGRL 1063 (1278)
Q Consensus 1047 ~~g~~~~A~~~l~kal~ 1063 (1278)
+.|++.+|.++|.+...
T Consensus 179 kagd~a~A~~~F~qia~ 195 (221)
T COG4649 179 KAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccchHHHHHHHHHHHc
Confidence 66666666666666554
No 324
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.65 E-value=16 Score=37.04 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=93.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHH
Q psy3224 753 AESCANQGAYECARAIYAQALATFPSKKS--IWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWL 830 (1278)
Q Consensus 753 a~~~~~~g~~~~A~~~~~~al~~~P~~~~--~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l 830 (1278)
+.-+.+.+..++|+..|...-+..-.+.. +.+..+.+..+.|+...|+..|..+-...|-..... .-.-+
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~r--------d~ARl 136 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGR--------DLARL 136 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhh--------HHHHH
Confidence 33345567778888888877766544433 455667888888888888888888776655443211 12356
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy3224 831 RAAYFEKNHGTRESLETLLQKAVA-HCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKL 903 (1278)
Q Consensus 831 ~~a~l~~~~g~~~~A~~~~~~al~-~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l 903 (1278)
+.++++...|.|+......+.+-. .+|--..+.-.+|..-++.|++.+|+..|.+... +...+......+.+
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ 209 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQI 209 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHH
Confidence 667777888888877666554322 3455556677788888899999999999988776 33334444444433
No 325
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.43 E-value=72 Score=42.03 Aligned_cols=53 Identities=11% Similarity=-0.008 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHH
Q psy3224 762 YECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEV 815 (1278)
Q Consensus 762 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 815 (1278)
+++|+..|+.. ...|.-+--|+..|.+|...|++++-+++|.-+++..|..+.
T Consensus 535 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 535 FTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 44555555443 223444455666666667777777767777777666666654
No 326
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=90.38 E-value=2 Score=39.08 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 988 QLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH 1033 (1278)
Q Consensus 988 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 1033 (1278)
..+++.+..+|++..+.+.++..+...|+++.|++.+-.+++.++.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 3455555566666666666666666666666666666665555544
No 327
>KOG3783|consensus
Probab=90.27 E-value=48 Score=39.79 Aligned_cols=77 Identities=25% Similarity=0.256 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCcHHHHHHHHH
Q psy3224 843 ESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNS----EEIWLAAVKLESENNEYERARRLLA 918 (1278)
Q Consensus 843 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~l~~~~g~~~~A~~~l~ 918 (1278)
+.+.+.+.......|++....+..+..+...|+.+.|+..++..+. +.- .-.++.++.++.-+.+|..|-..+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4466667777778999998888999999999998888888888876 221 1233455666666677888877777
Q ss_pred HHH
Q psy3224 919 KAR 921 (1278)
Q Consensus 919 ~al 921 (1278)
...
T Consensus 328 ~L~ 330 (546)
T KOG3783|consen 328 LLR 330 (546)
T ss_pred HHH
Confidence 765
No 328
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=90.27 E-value=46 Score=39.49 Aligned_cols=180 Identities=10% Similarity=0.007 Sum_probs=116.2
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHH
Q psy3224 928 QANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMK 1007 (1278)
Q Consensus 928 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l 1007 (1278)
...|-+...+..+..++..+..+.-...++.+++....+-..++.++.+|... ..++-..++++.++.+-++...-..+
T Consensus 60 s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReL 138 (711)
T COG1747 60 SKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGREL 138 (711)
T ss_pred hhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHH
Confidence 44566666666677777677777777788888888887778888888888777 66777888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH-HHH
Q psy3224 1008 GQIEEQKNLLDKAHDTFSQAIKKC-PH-----SVPLWIMLANLEERRKMLIKARSVLEKGRLRNP-NCAELWLAAI-RVE 1079 (1278)
Q Consensus 1008 a~~~~~~g~~~~A~~~~~~al~~~-p~-----~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p-~~~~~~~~l~-~~~ 1079 (1278)
+..|.+ ++.+.+..+|.+++... |. -.++|..+..+ --.+.+.-.....+.-.... .-..+..... .-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 888777 78888888888887543 21 12344433321 12334444444444333322 1222223222 455
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHh
Q psy3224 1080 IRAGLKDIANTMMAKALQECPNAGILWAEAIF 1111 (1278)
Q Consensus 1080 ~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~ 1111 (1278)
....++.+|+.++...++.+..+..+...++.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~ 247 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIE 247 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHH
Confidence 66678888888888888777665544443333
No 329
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=89.99 E-value=0.54 Score=34.38 Aligned_cols=26 Identities=38% Similarity=0.372 Sum_probs=19.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 749 WMEDAESCANQGAYECARAIYAQALA 774 (1278)
Q Consensus 749 ~~~la~~~~~~g~~~~A~~~~~~al~ 774 (1278)
|..+|.++...|++++|+.+|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56778888888888888888888543
No 330
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=89.95 E-value=13 Score=36.19 Aligned_cols=112 Identities=15% Similarity=0.251 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhCC---CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhhhhCCc-ccc---HHHHHHHHHHHHHcC
Q psy3224 655 ARKVLNKARENIP---TDRQIWTTAAKLEEAH----GNNAMVDKIIDRALSSLSANGV-EIN---REHWFKEAIEAEKAG 723 (1278)
Q Consensus 655 A~~~l~~al~~~p---~~~~~~~~la~~~~~~----g~~~~A~~il~~al~~~~~~~~-~~~---~~~~l~~A~~~~~~g 723 (1278)
.+..|+..+.... +-.+.|.....-.+.. +.......++++++..+.+... ..+ ...|+..|..+.
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--- 80 (126)
T PF08311_consen 4 QRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--- 80 (126)
T ss_dssp HHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS---
T ss_pred HHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc---
Confidence 3445555555433 2345666555444433 3455666777777776654321 111 234554443222
Q ss_pred ChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 724 SVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQAL 773 (1278)
Q Consensus 724 ~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 773 (1278)
.+..+|..+...++... .+..|...|..+...|++.+|.++|+.++
T Consensus 81 ---~~~~if~~l~~~~IG~~-~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 ---DPREIFKFLYSKGIGTK-LALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp ---HHHHHHHHHHHHTTSTT-BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHcCccHH-HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 67777777776555432 25677777777778888888887777654
No 331
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.84 E-value=4.7 Score=40.58 Aligned_cols=98 Identities=12% Similarity=-0.089 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 1002 KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIR 1081 (1278)
Q Consensus 1002 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~ 1081 (1278)
..++.+..+-...++.+.+..++...--+.|+.+.+-..-+.++...|++.+|+.+|+.+....|..+..-..++.++..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 44555556667788999999999988889999999999999999999999999999999888888888776666777766
Q ss_pred cCCHHHHHHHHHHHHHHCC
Q psy3224 1082 AGLKDIANTMMAKALQECP 1100 (1278)
Q Consensus 1082 ~g~~~~A~~~~~kal~~~P 1100 (1278)
.|+.+ =..+-..+++..+
T Consensus 91 ~~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 91 LGDPS-WRRYADEVLESGA 108 (160)
T ss_pred cCChH-HHHHHHHHHhcCC
Confidence 66643 3333444555554
No 332
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.71 E-value=3.3 Score=43.04 Aligned_cols=93 Identities=10% Similarity=0.115 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--hH----HHH
Q psy3224 935 EIWLAAVKLESENNEYERARRLLAKARASAPT----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPD--FA----KLW 1004 (1278)
Q Consensus 935 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~----~~~ 1004 (1278)
.++..+|..|.+.|+.+.|++.|.++...+.+ ..+++.+..+....+++..+..++.++-..... +. .+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 34456666666677777777777766665543 255666666666667777666666665543221 11 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 1005 MMKGQIEEQKNLLDKAHDTFSQA 1027 (1278)
Q Consensus 1005 ~~la~~~~~~g~~~~A~~~~~~a 1027 (1278)
..-|..+...++|..|...|-.+
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 22333344455555555554444
No 333
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.55 E-value=12 Score=41.61 Aligned_cols=64 Identities=11% Similarity=0.040 Sum_probs=59.4
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 746 KHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAH 809 (1278)
Q Consensus 746 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 809 (1278)
..++..++..+...|+++.+...+++.+..+|.+..+|..+...|...|+...|+..|+++-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4578889999999999999999999999999999999999999999999999999999887653
No 334
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.35 E-value=2.8 Score=43.59 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q psy3224 861 VLWLMGAKSKWLAGDVPAARGILSLAFQANPNS---EEIWLAAVKLESENNEYERARRLLAKARA 922 (1278)
Q Consensus 861 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~l~~~~g~~~~A~~~l~~al~ 922 (1278)
..+..+|..|.+.|+++.|++.|.++...+... .++++.+.++....+++..+..++.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 567899999999999999999999988877542 56778888888888888888888888753
No 335
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=89.16 E-value=2.5 Score=39.48 Aligned_cols=44 Identities=25% Similarity=0.228 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1020 AHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRL 1063 (1278)
Q Consensus 1020 A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~ 1063 (1278)
+.++|.++..+.|..+..++.+|.-+.....|+++..--++++.
T Consensus 63 sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 63 SVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 55555556666665555555555444444444555544444443
No 336
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=89.09 E-value=52 Score=38.50 Aligned_cols=53 Identities=15% Similarity=-0.053 Sum_probs=46.6
Q ss_pred cccchHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy3224 492 GDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEE 544 (1278)
Q Consensus 492 ~~~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~ 544 (1278)
...||+..|-+-+..+++..|..|+.-...+++....|.|+.|...+.-+-+.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~ 352 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI 352 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh
Confidence 44599999999999999999999999999999999999999999888765444
No 337
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=88.82 E-value=11 Score=45.33 Aligned_cols=105 Identities=16% Similarity=-0.010 Sum_probs=62.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHH-HHHhCCCCHHHHHHH------HHHHH
Q psy3224 974 AKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQ-AIKKCPHSVPLWIML------ANLEE 1046 (1278)
Q Consensus 974 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l------a~l~~ 1046 (1278)
...+...+....+...+..++..+|++..+...++......|....+...+.. +....|++..+...+ +++..
T Consensus 74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (620)
T COG3914 74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK 153 (620)
T ss_pred HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH
Confidence 33444455666666666677777777777777766666555544444443333 666666665555444 55555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy3224 1047 RRKMLIKARSVLEKGRLRNPNCAELWLAAIRV 1078 (1278)
Q Consensus 1047 ~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~ 1078 (1278)
..++..++...++++..+.|.++.+...++..
T Consensus 154 ~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 154 LLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 66666667777777777777666554444443
No 338
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=88.38 E-value=3.6 Score=44.17 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLL 990 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l 990 (1278)
..+++.+|.+|...++.+....++
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl 141 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFL 141 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHH
Confidence 356666666666666644433333
No 339
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.23 E-value=6.8 Score=47.07 Aligned_cols=28 Identities=14% Similarity=0.294 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 1000 FAKLWMMKGQIEEQKNLLDKAHDTFSQA 1027 (1278)
Q Consensus 1000 ~~~~~~~la~~~~~~g~~~~A~~~~~~a 1027 (1278)
++..|..+|.....+|+++-|..+|+++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3455555555555555555555555443
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=88.12 E-value=11 Score=45.18 Aligned_cols=159 Identities=15% Similarity=0.055 Sum_probs=98.5
Q ss_pred HcCCHHHHHHHHH--HHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 946 ENNEYERARRLLA--KARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDT 1023 (1278)
Q Consensus 946 ~~g~~~~A~~~l~--~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 1023 (1278)
..++++.+..+.. +.+..-| .......+.++...|.++.|+.+. .++...+.+ ..+.|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeL---Al~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQFV--------TDPDHRFEL---ALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHH---HHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHH---HHhcCCHHHHHHH
Confidence 6778888777664 2222223 455667777888888888777654 234444444 4788999999875
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Q psy3224 1024 FSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAG 1103 (1278)
Q Consensus 1024 ~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~ 1103 (1278)
.. ..+++..|..+|......|+++-|...|.++-. +..+..+|.-.|+.+.-..+...+......+.
T Consensus 341 a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~ 407 (443)
T PF04053_consen 341 AK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDINI 407 (443)
T ss_dssp CC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHH
T ss_pred HH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCHHH
Confidence 33 334788999999999999999999999987732 35566677788998777777766655443222
Q ss_pred HHHHHHHhccCCCCChhHHHHHHHHhccCcc
Q psy3224 1104 ILWAEAIFLEPRPQRKTKSVDALKKCEHDPH 1134 (1278)
Q Consensus 1104 ~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~ 1134 (1278)
.+ ..+.-.|+.++.+++|.++...|.
T Consensus 408 -af----~~~~~lgd~~~cv~lL~~~~~~~~ 433 (443)
T PF04053_consen 408 -AF----QAALLLGDVEECVDLLIETGRLPE 433 (443)
T ss_dssp -HH----HHHHHHT-HHHHHHHHHHTT-HHH
T ss_pred -HH----HHHHHcCCHHHHHHHHHHcCCchH
Confidence 11 122234788888888888766665
No 341
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.51 E-value=93 Score=39.54 Aligned_cols=210 Identities=12% Similarity=-0.025 Sum_probs=122.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHH
Q psy3224 866 GAKSKWLAGDVPAARGILSLAFQANPNSE----EIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAV 941 (1278)
Q Consensus 866 la~~~~~~g~~~~A~~~l~~al~~~p~~~----~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la 941 (1278)
++..-....+.+.|...+.+......-+. .++..++.-....+...+|...+..+. ....+...+....
T Consensus 247 ~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~-------~~~~~~~~~e~r~ 319 (644)
T PRK11619 247 VAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVI-------MRSQSTSLLERRV 319 (644)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcc-------cccCCcHHHHHHH
Confidence 33334456677888888887655554332 233334332222222556666666542 2333455555556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCH---
Q psy3224 942 KLESENNEYERARRLLAKARASAP-TPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLL--- 1017 (1278)
Q Consensus 942 ~~~~~~g~~~~A~~~l~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~--- 1017 (1278)
++....++++.+...+..+-.... .+.-.+.+|..+...|+.++|..+|+++.. +.+ .|-.++.- +.|..
T Consensus 320 r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~~~--fYG~LAa~--~Lg~~~~~ 393 (644)
T PRK11619 320 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--QRG--FYPMVAAQ--RLGEEYPL 393 (644)
T ss_pred HHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--CCC--cHHHHHHH--HcCCCCCC
Confidence 666688899887777776533222 356677778887779999999999999754 222 33233322 22221
Q ss_pred HHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 1018 DKA-HDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKA 1095 (1278)
Q Consensus 1018 ~~A-~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ka 1095 (1278)
... ...-...+ +.. -....+..+...|....|...+..++.. . ++.-...++.+....|.++.++....++
T Consensus 394 ~~~~~~~~~~~~---~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~-~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 394 KIDKAPKPDSAL---TQG--PEMARVRELMYWNMDNTARSEWANLVAS-R-SKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred CCCCCCchhhhh---ccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 000 00000111 111 1245566777889999999888887765 3 3444577778888889888888776543
No 342
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=87.39 E-value=0.75 Score=48.17 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=27.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 1013 QKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPN 1067 (1278)
Q Consensus 1013 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~ 1067 (1278)
..++.+.|.+.|.+++...|.....|+.++....+.|+++.|...|++.++++|.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3444444555555555555554445555555555555555555555555555443
No 343
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=87.21 E-value=36 Score=41.18 Aligned_cols=93 Identities=14% Similarity=-0.092 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH-HHH
Q psy3224 1019 KAHDTFSQAIKKCPHSVPLWIML--ANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMM-AKA 1095 (1278)
Q Consensus 1019 ~A~~~~~~al~~~p~~~~~~~~l--a~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~-~ka 1095 (1278)
.+...+...+..+|.++.++... ...+...+....+.-.+..++..+|.++....+++......|....+...+ +.+
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 35555555555666666654433 444455666666777777777777777777677766555455444444433 336
Q ss_pred HHHCCCcHHHHHHHHh
Q psy3224 1096 LQECPNAGILWAEAIF 1111 (1278)
Q Consensus 1096 l~~~P~~~~~~~~~~~ 1111 (1278)
....|++......+..
T Consensus 129 ~~~~~~~~~~~~~~~~ 144 (620)
T COG3914 129 EWLSPDNAEFLGHLIR 144 (620)
T ss_pred HhcCcchHHHHhhHHH
Confidence 6677776666555533
No 344
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.18 E-value=1 Score=33.77 Aligned_cols=28 Identities=11% Similarity=0.308 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKI 1207 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~ 1207 (1278)
++..+|.+|...|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 7889999999999999999999999874
No 345
>KOG0889|consensus
Probab=87.09 E-value=76 Score=46.61 Aligned_cols=44 Identities=23% Similarity=0.109 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhcc
Q psy3224 1070 ELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLE 1113 (1278)
Q Consensus 1070 ~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~ 1113 (1278)
+.+...|.+..+.|+.++|-..|..|++.+-..+.+|...+...
T Consensus 2813 eff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~ 2856 (3550)
T KOG0889|consen 2813 EFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYL 2856 (3550)
T ss_pred HHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45677788999999999999999999999988888888777654
No 346
>KOG1920|consensus
Probab=86.96 E-value=1.1e+02 Score=40.42 Aligned_cols=109 Identities=16% Similarity=0.096 Sum_probs=57.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 1012 EQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTM 1091 (1278)
Q Consensus 1012 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 1091 (1278)
.+.+-|..|..+|.--.+.. -.++..+|..+.....+++|.-.|+++-++ -....++...|++.+|..+
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~---k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------ekAl~a~~~~~dWr~~l~~ 987 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQ---KVIYEAYADHLREELMSDEAALMYERCGKL--------EKALKAYKECGDWREALSL 987 (1265)
T ss_pred HhcccchhhhheeccCHHHH---HHHHHHHHHHHHHhccccHHHHHHHHhccH--------HHHHHHHHHhccHHHHHHH
Confidence 34455555555443322221 234555566666666666666666655322 2223455556666666665
Q ss_pred HHHHHHHCCCcHHHH---HHHHhccCCCCChhHHHHHHHHhccCcc
Q psy3224 1092 MAKALQECPNAGILW---AEAIFLEPRPQRKTKSVDALKKCEHDPH 1134 (1278)
Q Consensus 1092 ~~kal~~~P~~~~~~---~~~~~~~~~~~~~~~A~~~l~k~~~~p~ 1134 (1278)
..+. .+.-.++. ..++..+...++.-+|.+++.....+|.
T Consensus 988 a~ql---~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~ 1030 (1265)
T KOG1920|consen 988 AAQL---SEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPE 1030 (1265)
T ss_pred HHhh---cCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHH
Confidence 4432 22222222 4455555666677777777776666665
No 347
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.57 E-value=0.96 Score=30.88 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=8.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1007 KGQIEEQKNLLDKAHDTFSQAIK 1029 (1278)
Q Consensus 1007 la~~~~~~g~~~~A~~~~~~al~ 1029 (1278)
+|.++...++++.|...|.++++
T Consensus 7 ~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 7 LGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHc
Confidence 33333333333333333333333
No 348
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.33 E-value=80 Score=37.58 Aligned_cols=184 Identities=13% Similarity=0.016 Sum_probs=110.6
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Q psy3224 845 LETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQA 924 (1278)
Q Consensus 845 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~ 924 (1278)
...++.+++... .+.-+++.++++|... ..++-..+.++.++.+-++...-..++..|.+ .+.+++..+|.+++-..
T Consensus 85 veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrf 161 (711)
T COG1747 85 VEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRF 161 (711)
T ss_pred HHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHh
Confidence 445556665543 3445677778887776 55666777778888777777667777777766 77777888888876332
Q ss_pred hhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--HHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCChH
Q psy3224 925 GAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT--PRVMIQSA-KLEWCLDNLERALQLLDEAIKVFPDFA 1001 (1278)
Q Consensus 925 ~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~la-~~~~~~g~~~~A~~~l~~al~~~p~~~ 1001 (1278)
-.-..+..-.++|..+..+ -..+.+.-..+..+.-..... ..+.+... .-|....++.+|+.++...++.+..+.
T Consensus 162 I~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~ 239 (711)
T COG1747 162 IPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDV 239 (711)
T ss_pred cchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhh
Confidence 1112222333455544432 234455555555554444332 23333333 345556788888888888888877776
Q ss_pred HHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCCC
Q psy3224 1002 KLWMMKGQIEEQ--------------------KNLLDKAHDTFSQAIKKCPH 1033 (1278)
Q Consensus 1002 ~~~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~p~ 1033 (1278)
.+.-.+...+.. -.++..+..-|+..+..+..
T Consensus 240 ~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eG 291 (711)
T COG1747 240 WARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEG 291 (711)
T ss_pred hHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccC
Confidence 665555554433 34666777777777655543
No 349
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=86.17 E-value=3.8 Score=32.98 Aligned_cols=42 Identities=12% Similarity=0.104 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy3224 862 LWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKL 903 (1278)
Q Consensus 862 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l 903 (1278)
..+.+|..+.+.|++++|+.+.+.+++..|++..+......+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 456677777888888888888888888888877665554444
No 350
>KOG0529|consensus
Probab=85.74 E-value=19 Score=41.68 Aligned_cols=134 Identities=17% Similarity=0.178 Sum_probs=96.1
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHH
Q psy3224 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN--LLDKAHDTFSQAIKKCPHSVPLWIMLANLEER----RKMLIKAR 1055 (1278)
Q Consensus 982 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~----~g~~~~A~ 1055 (1278)
..+.-+.+...+++.+|++..+|.....++.+.+ ++..=..+.+++++.+|.+...|...=.+... .....+=+
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El 169 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEEL 169 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHH
Confidence 4566677788888999999999999988887665 46778888889999999888887754333322 22355667
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHHHCCCcHHHHHHHHhccCC
Q psy3224 1056 SVLEKGRLRNPNCAELWLAAIRVEIR------AGL------KDIANTMMAKALQECPNAGILWAEAIFLEPR 1115 (1278)
Q Consensus 1056 ~~l~kal~~~p~~~~~~~~l~~~~~~------~g~------~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~ 1115 (1278)
++..+++..++.|-.+|.....++.. .|+ ...-.+....|+-.+|++..+|....+++.+
T Consensus 170 ~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 170 EFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 78888888888888888877766542 231 2334455566677789988888877776654
No 351
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=85.42 E-value=1.2 Score=46.66 Aligned_cols=59 Identities=14% Similarity=0.349 Sum_probs=51.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Q psy3224 1187 LFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKH 1245 (1278)
Q Consensus 1187 ~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~ 1245 (1278)
...+.++.+.|.+.|.+++.+.|+....|..++.+..+.|+.+.|...++++++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44567888999999999999999999999999999999999999999999999988854
No 352
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.37 E-value=7.3 Score=41.83 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKV 996 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~ 996 (1278)
.+.+.+|.+.++.|++++|..+|.+++..
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45555556666666666666666665554
No 353
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.30 E-value=23 Score=35.16 Aligned_cols=72 Identities=15% Similarity=0.068 Sum_probs=42.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy3224 979 CLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKM 1050 (1278)
Q Consensus 979 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~ 1050 (1278)
..++.+.+..++..+--+.|+.+.+-..-|.++...|++.+|..+|+......+..+..--.++.++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 355666666666666566666666666666666666666666666666655555544444444544444443
No 354
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=84.32 E-value=1.6 Score=30.68 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHh
Q psy3224 623 EDARILLSRAVECCPTSVELWLALARL 649 (1278)
Q Consensus 623 e~A~~~l~kal~~~P~~~~~w~~la~l 649 (1278)
+.|+.+|++.+..+|. +..|+.+|++
T Consensus 4 dRAR~IyeR~v~~hp~-~k~WikyAkF 29 (32)
T PF02184_consen 4 DRARSIYERFVLVHPE-VKNWIKYAKF 29 (32)
T ss_pred HHHHHHHHHHHHhCCC-chHHHHHHHh
Confidence 4444444444444432 3444444443
No 355
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=84.25 E-value=1.5e+02 Score=39.07 Aligned_cols=112 Identities=13% Similarity=0.058 Sum_probs=56.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy3224 973 SAKLEWCLDNLERALQLLDEAIK--VFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKM 1050 (1278)
Q Consensus 973 la~~~~~~g~~~~A~~~l~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~ 1050 (1278)
....+....++++|-+++.+.-. ...+...++..+|..+.-.++-+-|...|..+.+-.+ .+..|. +.++...|.
T Consensus 810 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~ 886 (932)
T PRK13184 810 EIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCREDAL-FPRSLD--GDIFDYLGK 886 (932)
T ss_pred HHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhcccccc-Ccchhh--ccccchhcc
Confidence 34445555666666666633211 1224456677777777777777777777776653222 122222 223334455
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 1051 LIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKAL 1096 (1278)
Q Consensus 1051 ~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal 1096 (1278)
..+...|+++-.- +.....++.-.|+.++- ..|+.+.
T Consensus 887 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~ 923 (932)
T PRK13184 887 ISDNLSWWEKKQL--------LRQKFLYFHCLGDSEER-DKYRQAY 923 (932)
T ss_pred ccccccHHHHHHH--------HHHHHHHHHHhCChhHh-HHHHHHH
Confidence 5555555554422 23333444445555544 4444443
No 356
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=84.11 E-value=44 Score=37.58 Aligned_cols=30 Identities=10% Similarity=-0.179 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q psy3224 843 ESLETLLQKAVAHCPKSEVLWLMGAKSKWL 872 (1278)
Q Consensus 843 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~ 872 (1278)
++++.+-.-...+.|..++++-..+.+++.
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~ 242 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQ 242 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 446666666777788888777666666543
No 357
>KOG4422|consensus
Probab=84.09 E-value=91 Score=36.29 Aligned_cols=130 Identities=14% Similarity=0.136 Sum_probs=86.9
Q ss_pred hCCCCH-HHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Q psy3224 605 HIPNSV-RLWKAAVELEDPEDARILLSRAVECCP-TSVELWLALARLETYENARKVLNKAREN--IPTDRQIWTTAAKLE 680 (1278)
Q Consensus 605 ~~P~s~-~Lw~al~~l~~~e~A~~~l~kal~~~P-~~~~~w~~la~l~~~~~A~~~l~~al~~--~p~~~~~~~~la~~~ 680 (1278)
.-|.++ .+...++++.+.+.|+.+|+.+....- -+.+.+..++..-.|..-.+++..++.. -| +...+..+..+.
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~P-nl~TfNalL~c~ 283 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTP-NLFTFNALLSCA 283 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCC-chHhHHHHHHHH
Confidence 334444 344557777788889999988876632 3344555555444555556677766653 45 677788888889
Q ss_pred HHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCCh-hHHHHHHHHH
Q psy3224 681 EAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSV-HTCQALIRAI 735 (1278)
Q Consensus 681 ~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~-~~A~~i~~~~ 735 (1278)
.+.|+++.|.+.+-+++......|+++....+......+.+.++. ..+..++..+
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 999999999998888888888888888877776666655555543 3344333333
No 358
>KOG2581|consensus
Probab=83.49 E-value=73 Score=36.82 Aligned_cols=105 Identities=11% Similarity=0.155 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC---HH
Q psy3224 895 EIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPN-SEEIWLAAVKLESENNEYERARRLLAKARASA--PT---PR 968 (1278)
Q Consensus 895 ~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~---~~ 968 (1278)
.+|+.+...+...++...-+..+...+. ...+..+.. ...+.+.+.+.|...+.++.|-.+..+..--. .+ .+
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lr-tAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~AR 248 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLR-TATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWAR 248 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHH-HhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHH
Confidence 3455555555555655544444433321 112232222 23334456666667777777766665543111 01 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh
Q psy3224 969 VMIQSAKLEWCLDNLERALQLLDEAIKVFPDF 1000 (1278)
Q Consensus 969 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 1000 (1278)
.++.+|.+..-+.+|..|.++|-+|+...|++
T Consensus 249 Y~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 249 YLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 55566666666777777777777777777753
No 359
>KOG4814|consensus
Probab=83.08 E-value=66 Score=39.25 Aligned_cols=87 Identities=13% Similarity=0.025 Sum_probs=51.6
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy3224 977 EWCLDNLERALQLLDEAIKVFPDF------AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKM 1050 (1278)
Q Consensus 977 ~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~ 1050 (1278)
.++..+|..++++|...+.-.|.+ ......+..||....+.+.|.++++.|-+.+|.++-....+.......++
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 344556666666666666655532 34444555566666666666666666666666666555555555556666
Q ss_pred HHHHHHHHHHHHH
Q psy3224 1051 LIKARSVLEKGRL 1063 (1278)
Q Consensus 1051 ~~~A~~~l~kal~ 1063 (1278)
.++|+..+.+...
T Consensus 444 Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 444 SEEALTCLQKIKS 456 (872)
T ss_pred hHHHHHHHHHHHh
Confidence 6666666555443
No 360
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.06 E-value=36 Score=33.90 Aligned_cols=72 Identities=10% Similarity=-0.027 Sum_probs=53.2
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Q psy3224 838 NHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNE 909 (1278)
Q Consensus 838 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~ 909 (1278)
..++.+++..++..+--..|+.+.+-+.-+.++...|++.+|+.+|.......+..+-.--.++.++...|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 367777788888777778888888888888888888888888888888877776666555555555554433
No 361
>KOG3783|consensus
Probab=82.97 E-value=1.2e+02 Score=36.70 Aligned_cols=66 Identities=8% Similarity=-0.089 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCCC----hhHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCCCC
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKI---DPDL----GDAWAYFYKFEIINGT-EETQAEVKKRCLAAEPKH 1245 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~---~P~~----~d~~~~l~~~~~~~G~-~~~A~~~l~ka~~~~P~~ 1245 (1278)
..+.+|.++...|+-..|..+|..+++. ...+ |-+++.++.++...|. ..++..++.++-+...++
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 4567799999999999999999999953 2221 5589999999998877 999999999998876544
No 362
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=82.93 E-value=14 Score=42.35 Aligned_cols=80 Identities=11% Similarity=-0.020 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAI---KKCPHSVPLWIMLANL 1044 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~la~l 1044 (1278)
.+-..+..+|..+++.+-|+....+.+..+|....-++..+.++..+.+|.+|...+--+. -++..+..-...+..+
T Consensus 229 fIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIkl 308 (569)
T PF15015_consen 229 FIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKL 308 (569)
T ss_pred HHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHH
Confidence 3445677889999999999999999999999998888888888888888888876544332 2233233333345555
Q ss_pred HHH
Q psy3224 1045 EER 1047 (1278)
Q Consensus 1045 ~~~ 1047 (1278)
||+
T Consensus 309 yWq 311 (569)
T PF15015_consen 309 YWQ 311 (569)
T ss_pred HHH
Confidence 553
No 363
>KOG0292|consensus
Probab=82.70 E-value=93 Score=39.50 Aligned_cols=102 Identities=14% Similarity=0.061 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C---HHHHHHHHHHHH------------HcCCHHHH--HHHHHHH
Q psy3224 1006 MKGQIEEQKNLLDKAHDTFSQAIKKCPH-------S---VPLWIMLANLEE------------RRKMLIKA--RSVLEKG 1061 (1278)
Q Consensus 1006 ~la~~~~~~g~~~~A~~~~~~al~~~p~-------~---~~~~~~la~l~~------------~~g~~~~A--~~~l~ka 1061 (1278)
..|.-+...|++.+|++.|..++-.-|- . ..-....+.-|. ...+.+++ +..|=.-
T Consensus 996 ~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~ 1075 (1202)
T KOG0292|consen 996 QKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTH 1075 (1202)
T ss_pred HHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhc
Confidence 3444456789999999999999865542 1 111111221111 12334444 2223223
Q ss_pred HHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Q psy3224 1062 RLRNPNCAE-LWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWA 1107 (1278)
Q Consensus 1062 l~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~ 1107 (1278)
..+.|-+.. ++.....+.++++++..|..+..+.++.-|..+.+-.
T Consensus 1076 ~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1076 CKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 344454433 3444556889999999999999999999998776544
No 364
>KOG1920|consensus
Probab=82.69 E-value=1.8e+02 Score=38.58 Aligned_cols=25 Identities=16% Similarity=0.121 Sum_probs=13.2
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 746 KHTWMEDAESCANQGAYECARAIYA 770 (1278)
Q Consensus 746 ~~~~~~la~~~~~~g~~~~A~~~~~ 770 (1278)
..++..+|+.+...+.+++|.-.|+
T Consensus 939 k~i~~~ya~hL~~~~~~~~Aal~Ye 963 (1265)
T KOG1920|consen 939 KVIYEAYADHLREELMSDEAALMYE 963 (1265)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHH
Confidence 3455555665555555555544443
No 365
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=82.33 E-value=60 Score=34.18 Aligned_cols=55 Identities=7% Similarity=0.045 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----ChhHHHHHHHHHHHhCCHHHH
Q psy3224 1176 HDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPD----LGDAWAYFYKFEIINGTEETQ 1231 (1278)
Q Consensus 1176 ~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~----~~d~~~~l~~~~~~~G~~~~A 1231 (1278)
++++..+.||-.|. ..+.++|+..+.+++++.+. |++++..|+.++.++|+++.|
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 45778999997776 78999999999999997543 478999999999999999886
No 366
>KOG2066|consensus
Probab=81.61 E-value=1.6e+02 Score=37.22 Aligned_cols=44 Identities=9% Similarity=0.123 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHH-------HHHHH--hCCCCcchhhhhhhccc
Q psy3224 1214 AWAYFYKFEIINGTEETQAEVK-------KRCLA--AEPKHGENWCRVAKNVS 1257 (1278)
Q Consensus 1214 ~~~~l~~~~~~~G~~~~A~~~l-------~ka~~--~~P~~~~~w~~~~k~~~ 1257 (1278)
.+..+..++.++|+..+|..++ ++|++ .+-+++++|+.+-+...
T Consensus 649 ~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~eLWe~LI~~~l 701 (846)
T KOG2066|consen 649 FYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSELWEDLINYSL 701 (846)
T ss_pred cHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHhh
Confidence 4445555667788888887665 66666 46688999999876444
No 367
>KOG3807|consensus
Probab=81.47 E-value=96 Score=34.68 Aligned_cols=132 Identities=8% Similarity=0.062 Sum_probs=77.5
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy3224 840 GTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAK 919 (1278)
Q Consensus 840 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~ 919 (1278)
.+..+-++....+++++|....++..+|.-. .--+.+|..+|+++++..... + ...+-....+...+|.
T Consensus 198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~---y-r~sqq~qh~~~~~da~----- 266 (556)
T KOG3807|consen 198 RNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETI---Y-RQSQQCQHQSPQHEAQ----- 266 (556)
T ss_pred cCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHH---H-hhHHHHhhhccchhhh-----
Confidence 4444566777889999999999998887653 345778999999998764321 1 1111111122211111
Q ss_pred HHHhhhhhhcCCCcHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 920 ARAQAGAFQANPNSEEIWL--AAVKLESENNEYERARRLLAKARASAPTP---RVMIQSAKLEWCLDNLERALQLL 990 (1278)
Q Consensus 920 al~~~~~l~~~p~~~~~~~--~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~la~~~~~~g~~~~A~~~l 990 (1278)
.....+..+|. .++.+..+.|+..+|.+.+....+..|-. .+.-++...+....-|.....++
T Consensus 267 --------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavL 334 (556)
T KOG3807|consen 267 --------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVL 334 (556)
T ss_pred --------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223334443 57778888999999999998888887742 33333444444443343333333
No 368
>KOG2581|consensus
Probab=81.41 E-value=52 Score=37.98 Aligned_cols=130 Identities=14% Similarity=0.150 Sum_probs=53.9
Q ss_pred HHhcCcHHHHHHHHHHHHHhhhhhhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C----HHHHHHH
Q psy3224 904 ESENNEYERARRLLAKARAQAGAFQANP---NSEEIWLAAVKLESENNEYERARRLLAKARASAP---T----PRVMIQS 973 (1278)
Q Consensus 904 ~~~~g~~~~A~~~l~~al~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p---~----~~~~~~l 973 (1278)
...++++.+|..+-+..+.......... -...+|+.+...+...|+...-+..+...+.... + ..+...+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 3345666666666666552211000000 0122344444444555554444444444333210 1 2233333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 974 AKLEWCLDNLERALQLLDEAIK--VFP--DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH 1033 (1278)
Q Consensus 974 a~~~~~~g~~~~A~~~l~~al~--~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 1033 (1278)
.+.|...+.++.|..+..+..- ... .....++.+|.+..-+++|..|.++|-.|+.+.|+
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 3444444455555444443321 000 11233344444544555555555555555555554
No 369
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=81.16 E-value=2.2 Score=30.05 Aligned_cols=30 Identities=27% Similarity=0.486 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy3224 651 TYENARKVLNKARENIPTDRQIWTTAAKLEE 681 (1278)
Q Consensus 651 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 681 (1278)
+++.|+.+|++.+...| ++..|+.+|.+.+
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHHHhhc
Confidence 57889999999999888 6889999988754
No 370
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=80.83 E-value=1.1e+02 Score=35.08 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=49.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 979 CLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVL 1058 (1278)
Q Consensus 979 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l 1058 (1278)
..|+...|..+-.+. +. | +-..|......+...++|++-..+... ..+|-.|.-...+....|+..+|..+.
T Consensus 189 ~~~~~k~A~kl~k~F-kv-~-dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~yI 260 (319)
T PF04840_consen 189 EMGQEKQAEKLKKEF-KV-P-DKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASKYI 260 (319)
T ss_pred HCCCHHHHHHHHHHc-CC-c-HHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHHHH
Confidence 445555444442222 11 2 355666666666666666655543321 223344555555566666666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 1059 EKGRLRNPNCAELWLAAIRVEIRAGLKDIANTM 1091 (1278)
Q Consensus 1059 ~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 1091 (1278)
.+ -++ ...+.+|.+.|++.+|.+.
T Consensus 261 ~k----~~~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 261 PK----IPD-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred Hh----CCh-----HHHHHHHHHCCCHHHHHHH
Confidence 55 111 2334555666666666554
No 371
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=80.74 E-value=4.1 Score=29.86 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH--HHHhhCCCC
Q psy3224 1179 HVLLAVSKLFWCENKNQKCREWFN--RTVKIDPDL 1211 (1278)
Q Consensus 1179 ~~l~~lg~~~~~~g~~~~A~~~~~--kal~~~P~~ 1211 (1278)
+.++.+|..+...|++++|+..|+ -+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 467888999999999999999944 777777754
No 372
>KOG0529|consensus
Probab=79.95 E-value=47 Score=38.53 Aligned_cols=59 Identities=12% Similarity=-0.067 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCH---HHHHHHHHHHHHhCCCCcchhhhhh
Q psy3224 1195 QKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTE---ETQAEVKKRCLAAEPKHGENWCRVA 1253 (1278)
Q Consensus 1195 ~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~---~~A~~~l~ka~~~~P~~~~~w~~~~ 1253 (1278)
.++++...++....|++.-.....+.+....+.. ++...++++...++|.....|..+.
T Consensus 353 qe~ie~c~~l~~~~P~~k~~~l~~~~l~~a~e~~~~~~~~l~~~~~le~~d~~~~~yykdl~ 414 (421)
T KOG0529|consen 353 QEQIESCVELQELLPDSKWGLLTSALLLRALEPMDSEEEILQLYNDLEALDPGRHQYYKDLH 414 (421)
T ss_pred HHHHHHHHHHHhhCCccchhHHHHHHHHhccccccchHHHHHHHHHHhccchhhhHHHHhHH
Confidence 4567777777788898877666666666555433 5566677777788888777776543
No 373
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=79.58 E-value=26 Score=36.83 Aligned_cols=55 Identities=16% Similarity=0.083 Sum_probs=28.3
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHH
Q psy3224 999 DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH----SVPLWIMLANLEERRKMLIKA 1054 (1278)
Q Consensus 999 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~l~~~~g~~~~A 1054 (1278)
+.+++.+.+|..|. ..+.++++.++.++++..+. +++++..++.++.+.|+++.|
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34555555555444 34555555555555554432 255555555555555555554
No 374
>KOG1310|consensus
Probab=79.05 E-value=5.9 Score=46.52 Aligned_cols=90 Identities=16% Similarity=0.034 Sum_probs=64.9
Q ss_pred cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQK---NLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARS 1056 (1278)
Q Consensus 980 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~ 1056 (1278)
.+....|+..|.++++..|....++...+.++.+. |+.-.|+.-...++.++|....+|+.|++++...+++.+|++
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 34566777788888888888777777777776553 355556666666777777777788888888888888888887
Q ss_pred HHHHHHHhCCCCH
Q psy3224 1057 VLEKGRLRNPNCA 1069 (1278)
Q Consensus 1057 ~l~kal~~~p~~~ 1069 (1278)
....+...+|.+.
T Consensus 467 ~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 467 CHWALQMSFPTDV 479 (758)
T ss_pred hHHHHhhcCchhh
Confidence 7777766777544
No 375
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=78.54 E-value=1e+02 Score=39.08 Aligned_cols=24 Identities=13% Similarity=0.020 Sum_probs=16.4
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 748 TWMEDAESCANQGAYECARAIYAQ 771 (1278)
Q Consensus 748 ~~~~la~~~~~~g~~~~A~~~~~~ 771 (1278)
-...+..+++-.|.|+.|+.++-+
T Consensus 260 ~p~~Yf~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 260 NPLLYFQVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp ----HHHHHHHTT-HHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHh
Confidence 344566788889999999998877
No 376
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=78.20 E-value=43 Score=33.07 Aligned_cols=46 Identities=13% Similarity=-0.065 Sum_probs=31.7
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 838 NHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILS 884 (1278)
Q Consensus 838 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~ 884 (1278)
..+.......+++.++..++.++..+..+..+|.... ..+....+.
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 3456677888888888887777788888888886543 344444444
No 377
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=77.07 E-value=39 Score=37.68 Aligned_cols=62 Identities=13% Similarity=-0.033 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1036 PLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQ 1097 (1278)
Q Consensus 1036 ~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~ 1097 (1278)
.++..++..+...|+++.+...+++.+..+|-+..+|..+..+|...|+...|+..|+++-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555544
No 378
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=76.32 E-value=5.6 Score=36.49 Aligned_cols=34 Identities=15% Similarity=0.289 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGD 1213 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d 1213 (1278)
++..+|.++...|++++|+..++.|+.+.....|
T Consensus 43 all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 43 ALLNLAELHRRFGHYEEALQALEEAIRLARENGD 76 (94)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCC
Confidence 6788999999999999999999999998766655
No 379
>KOG3364|consensus
Probab=76.15 E-value=38 Score=32.99 Aligned_cols=73 Identities=8% Similarity=0.051 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 965 PTPRVMIQSAKLEWCLD---NLERALQLLDEAIK-VFPDF-AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPL 1037 (1278)
Q Consensus 965 p~~~~~~~la~~~~~~g---~~~~A~~~l~~al~-~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 1037 (1278)
++....++++..+.... +..+.+.+++..++ ..|.. -+..+.++.-+.+.++|+.++.+...+++..|++..+
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 33344444444443332 34455555655554 33322 2444445555556666666666666666666655443
No 380
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=75.74 E-value=88 Score=35.30 Aligned_cols=181 Identities=14% Similarity=0.047 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 876 VPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARR 955 (1278)
Q Consensus 876 ~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 955 (1278)
-++|+.+-.-...+.|..+++.-.++.+..+......=...=-. .+-....+...|. .+-++++..
T Consensus 212 c~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~------~vlL~dQDr~lW~--------r~lI~eg~a 277 (415)
T COG4941 212 CDEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGE------PVLLEDQDRSLWD--------RALIDEGLA 277 (415)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCC------eeeccccchhhhh--------HHHHHHHHH
Confidence 45677777777788898888887777665532211100000000 0111223444443 234567778
Q ss_pred HHHHHHHhC-CCHHHHH-HHHHHHHH-----cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 956 LLAKARASA-PTPRVMI-QSAKLEWC-----LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAI 1028 (1278)
Q Consensus 956 ~l~~al~~~-p~~~~~~-~la~~~~~-----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 1028 (1278)
++.+++... |.+.... .++.++.. .-+|..-..+|.-.....|+ |.+-++.+.......-...+....+...
T Consensus 278 ll~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~ 356 (415)
T COG4941 278 LLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALL 356 (415)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhh
Confidence 888877663 4442222 22222221 23566666677666666665 5555555555555455566666555544
Q ss_pred Hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 1029 KK--CPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 1029 ~~--~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
.. -......+...+.++.+.|..++|...|++++.+.++..+-
T Consensus 357 ~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer 401 (415)
T COG4941 357 ARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAER 401 (415)
T ss_pred cccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHH
Confidence 33 22234455566778888888888888888888877766543
No 381
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=75.63 E-value=76 Score=30.24 Aligned_cols=83 Identities=23% Similarity=0.248 Sum_probs=39.9
Q ss_pred HcCCHHHHHHHHHHHHHhC---CC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCChHHHHH
Q psy3224 946 ENNEYERARRLLAKARASA---PT----------PRVMIQSAKLEWCLDNLERALQLLDEAIK-------VFPDFAKLWM 1005 (1278)
Q Consensus 946 ~~g~~~~A~~~l~~al~~~---p~----------~~~~~~la~~~~~~g~~~~A~~~l~~al~-------~~p~~~~~~~ 1005 (1278)
..|.|++|...+.+++... |. ...+..++..+...|+|++++..-+++|. ++.+....|+
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 4566777777776666553 21 23333445555666666665554444432 3334444443
Q ss_pred H----HHHHHHHcCCHHHHHHHHHHHH
Q psy3224 1006 M----KGQIEEQKNLLDKAHDTFSQAI 1028 (1278)
Q Consensus 1006 ~----la~~~~~~g~~~~A~~~~~~al 1028 (1278)
. .+..+...|+.++|...|+.+-
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3 3334445555555555555443
No 382
>KOG3364|consensus
Probab=75.35 E-value=49 Score=32.28 Aligned_cols=74 Identities=14% Similarity=0.138 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy3224 709 REHWFKEAIEAEKAGS---VHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIW 783 (1278)
Q Consensus 709 ~~~~l~~A~~~~~~g~---~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~ 783 (1278)
....+.+|-.+....+ ......+++.++. ...+..+....+.+|-.+.+.++|+.++.+....++..|+|..+.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~-~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK-SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh-hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3444455555444433 3444555666655 112222344555566666677777777777777777777666543
No 383
>KOG4014|consensus
Probab=74.98 E-value=1.1e+02 Score=31.60 Aligned_cols=109 Identities=11% Similarity=0.071 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHhCCChHHHHHHH
Q psy3224 934 EEIWLAAVKLES-ENNEYERARRLLAKARASAPTPRVMIQSAKLEWC-----LDNLERALQLLDEAIKVFPDFAKLWMMK 1007 (1278)
Q Consensus 934 ~~~~~~la~~~~-~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~-----~g~~~~A~~~l~~al~~~p~~~~~~~~l 1007 (1278)
++.-..++..+. -..++++|..+|..-...+.-+...+.++..+.. .+++..|+..|..+.. .+++.+...+
T Consensus 34 Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~ 111 (248)
T KOG4014|consen 34 PESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYL 111 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhh
Confidence 344444444332 3457777887777766666666666676665432 3467788888877765 3456666666
Q ss_pred HHHHHHc-----C--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy3224 1008 GQIEEQK-----N--LLDKAHDTFSQAIKKCPHSVPLWIMLANLEE 1046 (1278)
Q Consensus 1008 a~~~~~~-----g--~~~~A~~~~~~al~~~p~~~~~~~~la~l~~ 1046 (1278)
|.+++.- + +..+|++++.++.... +..+.+.|..++.
T Consensus 112 gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~ 155 (248)
T KOG4014|consen 112 GLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYM 155 (248)
T ss_pred hhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHh
Confidence 6665432 2 3667888888876554 3445555555554
No 384
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=74.93 E-value=79 Score=30.12 Aligned_cols=96 Identities=16% Similarity=0.053 Sum_probs=55.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhc
Q psy3224 754 ESCANQGAYECARAIYAQALATFPS------------KKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGA 821 (1278)
Q Consensus 754 ~~~~~~g~~~~A~~~~~~al~~~P~------------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~ 821 (1278)
.-.+..|-|++|..-+.++++..-+ +.-.+-.++..+...|++++++..-++
T Consensus 17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~---------------- 80 (144)
T PF12968_consen 17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADR---------------- 80 (144)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH----------------
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHH----------------
Confidence 3344557788888888877765322 112345566777778888776554444
Q ss_pred ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHH----HHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 822 KSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWL----MGAKSKWLAGDVPAARGILSLAFQ 888 (1278)
Q Consensus 822 ~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~----~la~~~~~~g~~~~A~~~l~~al~ 888 (1278)
|+.+|++-=+++.+...+|+ ..+..+...|..++|+..|+.+-+
T Consensus 81 -----------------------aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 81 -----------------------ALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp -----------------------HHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred -----------------------HHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 44444444445555555554 445566677888888887777654
No 385
>KOG1310|consensus
Probab=74.54 E-value=8.2 Score=45.41 Aligned_cols=89 Identities=13% Similarity=0.023 Sum_probs=70.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 947 NNEYERARRLLAKARASAPTP-RVMIQSAKLEWC---LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHD 1022 (1278)
Q Consensus 947 ~g~~~~A~~~l~~al~~~p~~-~~~~~la~~~~~---~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 1022 (1278)
.+....|+..|.++++..|.. .++.+.+.++.. .|+.-.|+.-...++.++|....+|+.++.++...+++.+|++
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 345677888899998888864 666666766654 3566778888888899999999999999999999999999999
Q ss_pred HHHHHHHhCCCCH
Q psy3224 1023 TFSQAIKKCPHSV 1035 (1278)
Q Consensus 1023 ~~~~al~~~p~~~ 1035 (1278)
+...+....|.+.
T Consensus 467 ~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 467 CHWALQMSFPTDV 479 (758)
T ss_pred hHHHHhhcCchhh
Confidence 8888877777543
No 386
>PTZ00046 rifin; Provisional
Probab=73.96 E-value=5.5 Score=45.30 Aligned_cols=49 Identities=29% Similarity=0.522 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHH---HHHHHhcCCchhhhhhhhhh
Q psy3224 149 DEEADMIYEEIDKRMDEKRKDYREKRLREE---LERYRQERPKIQQQFSDLKR 198 (1278)
Q Consensus 149 d~ead~i~~~~d~~~~~~r~~~~~~~~~~~---~~~~~~~~~~i~~qf~~lkr 198 (1278)
|+..-.=|++-|+||.++|++.+|+..|+= +.|-.-|+ ...+||+-|--
T Consensus 65 ~rqTsQRF~EYdERM~~kRqkcKeqCDKeIQKIILKDKlEK-eL~ekf~tL~T 116 (358)
T PTZ00046 65 DRQTSQRFEEYDERMKEKRQKCKEQCDKEIQKIILKDKLEK-ELMEKFATLQT 116 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH-HHHhhhhhccc
Confidence 345556689999999999999998877662 12222221 25678887754
No 387
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=73.47 E-value=18 Score=39.68 Aligned_cols=64 Identities=17% Similarity=0.121 Sum_probs=41.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy3224 976 LEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039 (1278)
Q Consensus 976 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 1039 (1278)
.+...++++.|..+.++.+..+|+++.-+.-.|.+|.+.|.+.-|+..+...+..+|+.+.+-.
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 4455566666666666666666666666666666666666666666666666666666654433
No 388
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=73.41 E-value=12 Score=40.95 Aligned_cols=60 Identities=18% Similarity=0.049 Sum_probs=33.9
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Q psy3224 1045 EERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGI 1104 (1278)
Q Consensus 1045 ~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~ 1104 (1278)
+...++++.|....++.+.++|.++.-+...|.+|.+.|-+.-|+.-++..+..+|+++.
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 344555555555555555555555555555555555555555555555555555555543
No 389
>PF13041 PPR_2: PPR repeat family
Probab=72.84 E-value=14 Score=29.00 Aligned_cols=45 Identities=11% Similarity=-0.014 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHH
Q psy3224 669 DRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAI 717 (1278)
Q Consensus 669 ~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~ 717 (1278)
+...|..+...+.+.|++++|.++|+++.+. ++.++..++.....
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~----g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKR----GIKPDSYTYNILIN 46 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Confidence 4557778888888888888888888888764 56666665554443
No 390
>PF13041 PPR_2: PPR repeat family
Probab=72.51 E-value=14 Score=29.04 Aligned_cols=43 Identities=9% Similarity=0.113 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Q psy3224 933 SEEIWLAAVKLESENNEYERARRLLAKARAS--APTPRVMIQSAK 975 (1278)
Q Consensus 933 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~la~ 975 (1278)
+...|..+...+.+.|++++|.++|+++.+. .|+...+..+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~ 46 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILIN 46 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3455666777777777777777777777765 355555554443
No 391
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.33 E-value=4.5 Score=27.04 Aligned_cols=23 Identities=9% Similarity=0.251 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFN 1202 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~ 1202 (1278)
+.+.+|.+++..|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 66778888888888888887765
No 392
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=72.32 E-value=2e+02 Score=33.72 Aligned_cols=44 Identities=27% Similarity=0.214 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 1017 LDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEK 1060 (1278)
Q Consensus 1017 ~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~k 1060 (1278)
.-+|+.+++.++...|.+..+...+.++|...|-...|...|..
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34555566666666666666666666666666666666666644
No 393
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=72.26 E-value=1.7e+02 Score=32.63 Aligned_cols=80 Identities=14% Similarity=0.143 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHH
Q psy3224 858 KSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLA--AVKLESENNEYERARRLLAKARAQAGAFQANPNSEE 935 (1278)
Q Consensus 858 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~--la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~ 935 (1278)
.++.++..+|..+++.|++.+|+..|-.+ +++..... +...... ...|....
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~~~---------------------~~~~~e~d 141 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEWST---------------------KGYPSEAD 141 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHHHH---------------------HTSS--HH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHHHH---------------------hcCCcchh
Confidence 46889999999999999999988877643 12222211 2211111 33455555
Q ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHHHHh
Q psy3224 936 IWLAAVK-LESENNEYERARRLLAKARAS 963 (1278)
Q Consensus 936 ~~~~la~-~~~~~g~~~~A~~~l~~al~~ 963 (1278)
++...+. -|...++...|...+....+.
T Consensus 142 lfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 142 LFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5554433 456778888888877776655
No 394
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=71.09 E-value=6.7 Score=29.12 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKI 1207 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~ 1207 (1278)
++..||.+....++|++|+.-|++++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 7889999999999999999999999985
No 395
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=71.08 E-value=1.1e+02 Score=30.09 Aligned_cols=116 Identities=21% Similarity=0.155 Sum_probs=56.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 979 CLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVL 1058 (1278)
Q Consensus 979 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l 1058 (1278)
..+.......+++.++..++.++.+...++.+|.+. +..+....+.. .++. .-....+.+..+.+.++++..+|
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~----~~~~-yd~~~~~~~c~~~~l~~~~~~l~ 92 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDN----KSNH-YDIEKVGKLCEKAKLYEEAVELY 92 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHh----cccc-CCHHHHHHHHHHcCcHHHHHHHH
Confidence 345666666666666666666666666666666544 23334443331 1111 11122334444555555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHCCCcHHHHHHHHhcc
Q psy3224 1059 EKGRLRNPNCAELWLAAIRVEIRA-GLKDIANTMMAKALQECPNAGILWAEAIFLE 1113 (1278)
Q Consensus 1059 ~kal~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~ 1113 (1278)
.+. .. +.....++... ++.+.|++++.+ +.++++|...+..+
T Consensus 93 ~k~----~~----~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 93 KKD----GN----FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred Hhh----cC----HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 443 11 11222222223 666666666554 34666777665443
No 396
>PRK12798 chemotaxis protein; Reviewed
Probab=70.11 E-value=2.3e+02 Score=33.38 Aligned_cols=192 Identities=16% Similarity=0.055 Sum_probs=105.6
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCC----HHHHHH
Q psy3224 898 LAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKL-ESENNEYERARRLLAKARASAPT----PRVMIQ 972 (1278)
Q Consensus 898 ~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~-~~~~g~~~~A~~~l~~al~~~p~----~~~~~~ 972 (1278)
+.-+.+.+-.|+..+|.+.+..+- -...|.....+..++.. .....+...|+.+|..+.-..|. .-.+..
T Consensus 116 L~~g~laY~~Gr~~~a~~~La~i~-----~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRR 190 (421)
T PRK12798 116 LADGALAYLSGRGREARKLLAGVA-----PEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRR 190 (421)
T ss_pred HHHHHHHHHcCCHHHHHHHhhcCC-----hhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 333333444555555555554432 12223333333333322 22455677777777777777775 234444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-CHHHHHHHHHHHHH
Q psy3224 973 SAKLEWCLDNLERALQLLDEAIKVFPDFA---KLWMMKGQIEEQKNLLDKAHDTFSQAIKK-CPH-SVPLWIMLANLEER 1047 (1278)
Q Consensus 973 la~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~-~~~~~~~la~l~~~ 1047 (1278)
-..+....|+.+++..+-.+.+..+.+++ .++-.+...+.+..+-..- ..+...+.. +|. ...+|..+++.-.-
T Consensus 191 si~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali 269 (421)
T PRK12798 191 SLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALI 269 (421)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 44455678888888888888888777664 3444444444444422222 224444443 333 25577778888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 1048 RKMLIKARSVLEKGRLRNPNCA----ELWLAAIRVEIRAGLKDIANTMMAKA 1095 (1278)
Q Consensus 1048 ~g~~~~A~~~l~kal~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~ka 1095 (1278)
.|+.+-|.-.-++++.+..... .+.+..+....-..+.+++...+..+
T Consensus 270 ~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 270 DGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred cCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 8888888888888887764221 22222222333344566666655544
No 397
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=69.40 E-value=7.1 Score=44.29 Aligned_cols=49 Identities=31% Similarity=0.539 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHhHHHHHhhhHHHHHHHHHH---HHHHHhcCCchhhhhhhhhh
Q psy3224 149 DEEADMIYEEIDKRMDEKRKDYREKRLREE---LERYRQERPKIQQQFSDLKR 198 (1278)
Q Consensus 149 d~ead~i~~~~d~~~~~~r~~~~~~~~~~~---~~~~~~~~~~i~~qf~~lkr 198 (1278)
|+..-.=|++-|+||.++|++..|+..|+= +.|-.-|+ ...+||+-|--
T Consensus 68 ~rqTsQRF~EYdERM~~kRqKcKeqCDKeIQKIILKDKiEK-eL~ekf~tL~T 119 (353)
T TIGR01477 68 DRQTSQRFEEYDERMQEKRQKCKEQCDKEIQKIILKDKLEK-ELTEKFSTLQT 119 (353)
T ss_pred hHHHHHHHHhHHHHHHHhhhhhHHhhchHHHHHHHHHHHHH-HHHHhhhhccc
Confidence 345566689999999999999998877662 12222221 25678877654
No 398
>KOG1839|consensus
Probab=69.38 E-value=25 Score=46.49 Aligned_cols=119 Identities=19% Similarity=0.062 Sum_probs=73.6
Q ss_pred HHHHHHH-HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHhcCcHHHHHH
Q psy3224 845 LETLLQK-AVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQAN--------PNSEEIWLAAVKLESENNEYERARR 915 (1278)
Q Consensus 845 A~~~~~~-al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--------p~~~~~~~~la~l~~~~g~~~~A~~ 915 (1278)
++.++.. .-..+|.....+..++.++...+++++|+..-.++.-++ |+....+..++.++...++...|..
T Consensus 957 slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~ 1036 (1236)
T KOG1839|consen 957 SLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALK 1036 (1236)
T ss_pred hhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhh
Confidence 3335553 334577778888888888888888888888776665332 3334556666666777777777777
Q ss_pred HHHHHHHhhh--hhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 916 LLAKARAQAG--AFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAS 963 (1278)
Q Consensus 916 ~l~~al~~~~--~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 963 (1278)
.+.+++.... .-...|.-..+...+..++...++++.|+.+++.|...
T Consensus 1037 ~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1037 SLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred hHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 7776653321 11234444445555555555556666666666666553
No 399
>KOG4279|consensus
Probab=68.98 E-value=83 Score=39.04 Aligned_cols=115 Identities=14% Similarity=0.099 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhC-CCCHH
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF------AKLWMMKGQIEE---QKNLLDKAHDTFSQAIKKC-PHSVP 1036 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~-p~~~~ 1036 (1278)
+.+...+...|+...+|+.-+.+.+.. +.-|+. ..+.+.++.++. +.|+-++|+...-.+++.. |-.+.
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~L-k~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDL-KRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHH-HhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Confidence 455555666666666776666655543 333422 222333444432 3466777777777666654 33455
Q ss_pred HHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy3224 1037 LWIMLANLEER---------RKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAG 1083 (1278)
Q Consensus 1037 ~~~~la~l~~~---------~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g 1083 (1278)
.+...|++|.. .+..+.|++||.++++..|....- .+++.++...|
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG 334 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAG 334 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhh
Confidence 55555666543 455677888888888888854432 34444444444
No 400
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=68.14 E-value=12 Score=27.80 Aligned_cols=26 Identities=8% Similarity=0.086 Sum_probs=12.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1004 WMMKGQIEEQKNLLDKAHDTFSQAIK 1029 (1278)
Q Consensus 1004 ~~~la~~~~~~g~~~~A~~~~~~al~ 1029 (1278)
+..+|.+|...|++++|..++++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 34444455555555555555554443
No 401
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=67.95 E-value=20 Score=31.42 Aligned_cols=56 Identities=11% Similarity=0.162 Sum_probs=42.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh---HHHHHHHHHHHhCCHHHHHHHHHH
Q psy3224 1182 LAVSKLFWCENKNQKCREWFNRTVKIDPDLGD---AWAYFYKFEIINGTEETQAEVKKR 1237 (1278)
Q Consensus 1182 ~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d---~~~~l~~~~~~~G~~~~A~~~l~k 1237 (1278)
..-|.-++..++.++|+..|+++++..++.++ ++.++++.+...|++.++..+.-+
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44465667899999999999999999988887 455556677777888777665533
No 402
>KOG0889|consensus
Probab=67.46 E-value=6.8e+02 Score=37.82 Aligned_cols=139 Identities=12% Similarity=0.075 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH----cCC----HHHHHHHHHHHHHhCCCCHHHH
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQ----KNL----LDKAHDTFSQAIKKCPHSVPLW 1038 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~----~~~A~~~~~~al~~~p~~~~~~ 1038 (1278)
+..+...|.+..+.|+.++|-..|..|++++-..+.+|...|..... ... -..|..+|-+|...+.. ..+.
T Consensus 2812 aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~-skaR 2890 (3550)
T KOG0889|consen 2812 AEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNS-SKAR 2890 (3550)
T ss_pred HHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccc-hhhH
Confidence 57777788889999999999999999999999889999998876532 222 23456666666555432 2233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-----HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Q psy3224 1039 IMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAA-----IRVEIRAGLKDIANTMMAKALQECPNAGILWA 1107 (1278)
Q Consensus 1039 ~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l-----~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~ 1107 (1278)
-.++++++-.. ++.|...+.+++...-..-..|.++ .......+...-+..++.+.-+..|.....+.
T Consensus 2891 k~iakvLwLls-~dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e~~~~~~iL~kia~~yPQal~f~l 2963 (3550)
T KOG0889|consen 2891 KLIAKVLWLLS-FDDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSKKEAKLVRLILIKIAKSYPQALYFPL 2963 (3550)
T ss_pred HHHHHHHHHHH-hccccchHHHHHHHhhccCCchhhhhhhHHHHhhccccchhHHHHHHHHHHHhchHHHHHHH
Confidence 34444443221 1222223333332222222222222 23445566777788888888888887655444
No 403
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=66.59 E-value=3.2e+02 Score=34.71 Aligned_cols=33 Identities=12% Similarity=0.301 Sum_probs=19.4
Q ss_pred HHHHHHHHH--HhcCCHHHHHHHHHHHHhhCCCChh
Q psy3224 1180 VLLAVSKLF--WCENKNQKCREWFNRTVKIDPDLGD 1213 (1278)
Q Consensus 1180 ~l~~lg~~~--~~~g~~~~A~~~~~kal~~~P~~~d 1213 (1278)
.+..+..++ +..|+++.|+..+++. .+-|.+..
T Consensus 505 ~Ll~L~~ff~~~~~g~~~~AL~~i~~L-~liP~~~~ 539 (613)
T PF04097_consen 505 LLLDLAEFFDLYHAGQYEQALDIIEKL-DLIPLDPS 539 (613)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHT-T-S-S-HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCCHH
Confidence 455555444 7889999999888775 36665443
No 404
>KOG1839|consensus
Probab=66.47 E-value=45 Score=44.28 Aligned_cols=135 Identities=20% Similarity=0.123 Sum_probs=80.7
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q psy3224 928 QANPNSEEIWLAAVKLESENNEYERARRLLAKARASAP--------T-PRVMIQSAKLEWCLDNLERALQLLDEAIKV-- 996 (1278)
Q Consensus 928 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--------~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~-- 996 (1278)
...|.....+..++.++.+.++.++|+..-.++.-... + ...+..++.+++..++...|...+.++...
T Consensus 967 ~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~ 1046 (1236)
T KOG1839|consen 967 VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKL 1046 (1236)
T ss_pred hcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhc
Confidence 34566666677777777777777777766655543321 1 245555555666666777777777666653
Q ss_pred ------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 997 ------FPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH--------SVPLWIMLANLEERRKMLIKARSVLEKGR 1062 (1278)
Q Consensus 997 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~l~~~~g~~~~A~~~l~kal 1062 (1278)
.|.-..+..++..++...++++.|+.+.+.|+...-. ....+..+++++...+++..|....+...
T Consensus 1047 Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1047 LSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred cccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 3444455566666666677777777777777764321 23344455666666666666555554443
No 405
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=64.03 E-value=20 Score=26.32 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHH--HHHHHHhcCCC
Q psy3224 515 PPAWIASARLEEVTGKVQAARNL--IMKGCEENQTS 548 (1278)
Q Consensus 515 ~~~wl~~arl~~~~g~~~~A~~~--l~~al~~~P~s 548 (1278)
++.|..+|-.....|++++|..+ ++-++..+|.|
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 36788888888999999999999 44777776653
No 406
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=63.98 E-value=34 Score=31.31 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=11.1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHH
Q psy3224 898 LAAVKLESENNEYERARRLLAKAR 921 (1278)
Q Consensus 898 ~~la~l~~~~g~~~~A~~~l~~al 921 (1278)
..++.++...|++++|+..+++++
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334444444444444444444444
No 407
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=63.11 E-value=42 Score=38.77 Aligned_cols=88 Identities=11% Similarity=-0.067 Sum_probs=67.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCh------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy3224 974 AKLEWCLDNLERALQLLDEAIKVFPDF------------------AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSV 1035 (1278)
Q Consensus 974 a~~~~~~g~~~~A~~~l~~al~~~p~~------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 1035 (1278)
|..++++++|..|.--|..+|+++.+- ..+-..+..||.+.++.+.|+....+.+..+|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 556788999999999999999875421 12334477788888999999998888888898888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 1036 PLWIMLANLEERRKMLIKARSVLEKG 1061 (1278)
Q Consensus 1036 ~~~~~la~l~~~~g~~~~A~~~l~ka 1061 (1278)
.-++.-|.++..+.+|.+|-.-+.-+
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888888888888776655433
No 408
>PF10581 Synapsin_N: Synapsin N-terminal; InterPro: IPR019736 The synapsins are a family of neuron-specific phosphoproteins that coat synaptic vesicles and are involved in the binding between these vesicles and the cytoskeleton (including actin filaments). The family comprises 5 homologous proteins Ia, Ib, IIa, IIb and III. Synapsins I, II, and III are encoded by 3 different genes. The a and b isoforms of synapsin I and II are splice variants of the primary transcripts []. Synapsin I is mainly associated with regulation of neurotransmitter release from presynaptic neuron terminals []. Synapsin II, as well as being involved in neurotransmitter release, has a role in the synaptogenesis and synaptic plasticity responsible for long term potentiation []. Recent studies implicate synapsin III with a developmental role in neurite elongation and synapse formation that is distinct from the functions of synapsins I and II []. Structurally, synapsins are multidomain proteins, of which 3 domains are common to all the mammalian forms. The N-terminal `A' domain is ~30 residues long and contains a serine residue that serves as an acceptor site for protein kinase-mediated phosphorylation. This is followed by the `B' linker domain, which is ~80 residues long and is relatively poorly conserved. Domain `C' is the longest, spanning approximately 300 residues. This domain is highly conserved across all the synapsins (including those from Drosophila) and is possessed by all splice variants. The remaining six domains, D-I, are not shared by all the synapsins and differ both between the primary transcripts and the splice variants. This entry represents a conserved octapeptide in the immediate N-terminal domain, which contains the phosphorylated serine residue.
Probab=62.73 E-value=3.2 Score=28.14 Aligned_cols=15 Identities=47% Similarity=0.795 Sum_probs=12.7
Q ss_pred CCCcccchhcccccc
Q psy3224 31 DPKGYLTDLQSMIPT 45 (1278)
Q Consensus 31 ~~~~~~~~~~~~~~~ 45 (1278)
=|.||++|||-+-|.
T Consensus 17 LPnGYm~dl~rp~p~ 31 (32)
T PF10581_consen 17 LPNGYMSDLQRPDPP 31 (32)
T ss_pred CCcchhcccCCCCCC
Confidence 389999999988774
No 409
>KOG2063|consensus
Probab=62.17 E-value=3.9e+02 Score=34.98 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 934 EEIWLAAVKLESENNEYERARRLLAKARA 962 (1278)
Q Consensus 934 ~~~~~~la~~~~~~g~~~~A~~~l~~al~ 962 (1278)
...|...+.++.+.|+.++|+.+|-..+.
T Consensus 684 ~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 684 DELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 45666666777777777777777765543
No 410
>PF12854 PPR_1: PPR repeat
Probab=62.02 E-value=16 Score=26.28 Aligned_cols=28 Identities=7% Similarity=0.032 Sum_probs=16.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 932 NSEEIWLAAVKLESENNEYERARRLLAK 959 (1278)
Q Consensus 932 ~~~~~~~~la~~~~~~g~~~~A~~~l~~ 959 (1278)
.+...|..++..+.+.|+.++|.++|++
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3445555666666666666666666554
No 411
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.55 E-value=40 Score=35.67 Aligned_cols=63 Identities=13% Similarity=0.039 Sum_probs=56.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHH
Q psy3224 753 AESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEV 815 (1278)
Q Consensus 753 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 815 (1278)
+..+.+.+...+|+...+.-++..|.+......+.+++.-.|++++|..-++-+-+..|+...
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTV 70 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccch
Confidence 345667788999999999999999999999999999999999999999999999999988764
No 412
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=61.47 E-value=28 Score=38.30 Aligned_cols=59 Identities=14% Similarity=-0.067 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 748 TWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKA 806 (1278)
Q Consensus 748 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~a 806 (1278)
++...+..|...|.+.+|+.+.++++..+|-+...|..+..++...|+--.+...+++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 55567888999999999999999999999999999999999999999988888877764
No 413
>KOG0276|consensus
Probab=61.44 E-value=1e+02 Score=37.50 Aligned_cols=44 Identities=27% Similarity=0.288 Sum_probs=25.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 979 CLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQA 1027 (1278)
Q Consensus 979 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 1027 (1278)
+.|+++.|..+..++ ++..=|-.||.+....+++..|.++|.++
T Consensus 649 ~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a 692 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRA 692 (794)
T ss_pred hcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhh
Confidence 455555555544333 34555666666666666666666666555
No 414
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=61.03 E-value=28 Score=38.27 Aligned_cols=61 Identities=15% Similarity=0.119 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLA 1240 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~ 1240 (1278)
.+...+..|...|.+.+|..+.+++++++|-+...|..+.+++...|+.-++.+.+++..+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 5666678889999999999999999999999999999999999999998888888877655
No 415
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=60.69 E-value=2e+02 Score=30.76 Aligned_cols=119 Identities=21% Similarity=0.205 Sum_probs=77.2
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHH
Q psy3224 976 LEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSV---PLWIMLANLEERRKMLI 1052 (1278)
Q Consensus 976 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~l~~~~g~~~ 1052 (1278)
-+.+.+...+++...+.-++..|.+......+.++++-.|++++|...++-+-...|+.. .+|..+..+..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea------ 83 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEA------ 83 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH------
Confidence 345667888999999999999999988888899999999999999999999988888753 23333333322
Q ss_pred HHH-HHHHHHHHhCCC----CHHHHHHHHH--HHHHc-CCHHHHHHHHHHHHHHCCCcH
Q psy3224 1053 KAR-SVLEKGRLRNPN----CAELWLAAIR--VEIRA-GLKDIANTMMAKALQECPNAG 1103 (1278)
Q Consensus 1053 ~A~-~~l~kal~~~p~----~~~~~~~l~~--~~~~~-g~~~~A~~~~~kal~~~P~~~ 1103 (1278)
++ ++|.- ...|. ....|..... +.... |.-+.+..+-+++++.-|..+
T Consensus 84 -~R~evfag--~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 84 -ARNEVFAG--GAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred -HHHHHhcc--CCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 11 12211 11221 2234444333 22233 355556677778888887654
No 416
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=59.79 E-value=13 Score=24.82 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q psy3224 516 PAWIASARLEEVTGKVQAARNLIM 539 (1278)
Q Consensus 516 ~~wl~~arl~~~~g~~~~A~~~l~ 539 (1278)
.+.+.+|+++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 467888999999999999998875
No 417
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=59.50 E-value=83 Score=30.56 Aligned_cols=58 Identities=19% Similarity=0.248 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 636 CPTSVELWLALARLETYENARKVLNKARENI--PTDRQIWTTAAKLEEAHGNNAMVDKIIDR 695 (1278)
Q Consensus 636 ~P~~~~~w~~la~l~~~~~A~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~il~~ 695 (1278)
+|.-..+|+.++++- .++..+|..+.... -.....|...|..++..|++.+|.++|+.
T Consensus 65 D~RyLkiWi~ya~~~--~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 65 DPRYLKIWLKYADNC--DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CHHHHHHHHHHHHhc--CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 344455677777653 33455565554432 22455677778888888888888887753
No 418
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=58.45 E-value=2.1e+02 Score=34.37 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIE 1011 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 1011 (1278)
.....+|++.+..++|+.|...|+-+.+-+-+ ..+|..+|-++
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~-Dkaw~~~A~~~ 251 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKN-DKAWKYLAGAQ 251 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh-chhHHHHHhHH
Confidence 55566788888888888888888877764443 44555555443
No 419
>KOG2066|consensus
Probab=57.83 E-value=5e+02 Score=33.05 Aligned_cols=72 Identities=10% Similarity=0.015 Sum_probs=45.8
Q ss_pred HhcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHH
Q psy3224 837 KNHGTRESLETLLQKAVAHCPK--SEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYE 911 (1278)
Q Consensus 837 ~~~g~~~~A~~~~~~al~~~P~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~ 911 (1278)
.+.+.|++|+...+.....-|. -...+..+..-+...|++++|-...-+.+ .++...|..........++..
T Consensus 367 l~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~---gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 367 LEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML---GNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh---cchHHHHHHHHHHhccccccc
Confidence 3456677787766555444443 33567777777788889988877665553 445667776666665555443
No 420
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.96 E-value=1.1e+02 Score=33.78 Aligned_cols=136 Identities=12% Similarity=0.072 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCC---CCChhHHHHH
Q psy3224 1051 LIKARSVLEKGRLRNPNCAELWLAAIRVEIRA--GLKDIANTMMAKALQECPNAGILWAEAIFLEPR---PQRKTKSVDA 1125 (1278)
Q Consensus 1051 ~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~--g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~---~~~~~~A~~~ 1125 (1278)
++.-..++..+++-+|.+-.+|...-.++... .++..-..+.+++++.+|.+-.+|.....+... .+++..+...
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 34556678888888888888888777766655 567777778888888888888888755555422 2222222221
Q ss_pred HHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHH---HHHHhcCC------HHH
Q psy3224 1126 LKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVS---KLFWCENK------NQK 1196 (1278)
Q Consensus 1126 l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg---~~~~~~g~------~~~ 1196 (1278)
++ .+...+..++.|+.+|...- ...+..|+ +++
T Consensus 170 ~e--------------------------------------ytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~ 211 (328)
T COG5536 170 LE--------------------------------------YTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEK 211 (328)
T ss_pred HH--------------------------------------hHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 11 12234455566666665552 11122333 455
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHH
Q psy3224 1197 CREWFNRTVKIDPDLGDAWAYFYKFEII 1224 (1278)
Q Consensus 1197 A~~~~~kal~~~P~~~d~~~~l~~~~~~ 1224 (1278)
-+++.-.++-.+|++..+|..+..+...
T Consensus 212 eL~~i~~~if~~p~~~S~w~y~r~~~~~ 239 (328)
T COG5536 212 ELEYIFDKIFTDPDNQSVWGYLRGVSSE 239 (328)
T ss_pred HHHHHHhhhhcCccccchhhHHHHHhcc
Confidence 6667777777899999999888665443
No 421
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=56.26 E-value=2.9e+02 Score=33.07 Aligned_cols=29 Identities=24% Similarity=0.088 Sum_probs=22.1
Q ss_pred HHHH-HHHHHHcCCHHHHHHHHHHHHHHCC
Q psy3224 1072 WLAA-IRVEIRAGLKDIANTMMAKALQECP 1100 (1278)
Q Consensus 1072 ~~~l-~~~~~~~g~~~~A~~~~~kal~~~P 1100 (1278)
|..+ +.-+...|+...|..+|.+++....
T Consensus 372 ~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 372 HMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 4444 3477888999999999999888764
No 422
>KOG0276|consensus
Probab=56.26 E-value=81 Score=38.32 Aligned_cols=73 Identities=12% Similarity=0.099 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 622 PEDARILLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSS 699 (1278)
Q Consensus 622 ~e~A~~~l~kal~~~P~~~~~w~~la~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~ 699 (1278)
+-+.+...++|++..++...-...+.++++++.|..+..++ ++..-|..++.+....|++..|.+.|.++...
T Consensus 623 Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 623 FLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred HhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 33445566677777777766667777889999888765443 46677999999999999999999999887643
No 423
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=56.22 E-value=80 Score=34.82 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=11.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 939 AAVKLESENNEYERARRLLAKAR 961 (1278)
Q Consensus 939 ~la~~~~~~g~~~~A~~~l~~al 961 (1278)
.+|..|...|++++|..+|+.+.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444445555555555555443
No 424
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=55.98 E-value=1.9e+02 Score=31.66 Aligned_cols=48 Identities=19% Similarity=-0.010 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHHH
Q psy3224 1051 LIKARSVLEKGRL-----RNPNCAE---LWLAAIRVE-IRAGLKDIANTMMAKALQE 1098 (1278)
Q Consensus 1051 ~~~A~~~l~kal~-----~~p~~~~---~~~~l~~~~-~~~g~~~~A~~~~~kal~~ 1098 (1278)
.++|...|++|+. +.|.+|. +.++++.++ ...|+.++|..+.++++..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 3667777777765 4577773 344455544 4488899999888887654
No 425
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=54.84 E-value=77 Score=34.96 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHcC
Q psy3224 949 EYERARRLLAKARASAPT-------PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF------AKLWMMKGQIEEQKN 1015 (1278)
Q Consensus 949 ~~~~A~~~l~~al~~~p~-------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g 1015 (1278)
.....+.++++++..... ..+...+|..|+..|++++|..+|+.+....... ..+...+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 334455555555554321 3555667777777777777777777775543321 344455555666666
Q ss_pred CHHHHHHHH
Q psy3224 1016 LLDKAHDTF 1024 (1278)
Q Consensus 1016 ~~~~A~~~~ 1024 (1278)
+.+..+.+.
T Consensus 233 ~~~~~l~~~ 241 (247)
T PF11817_consen 233 DVEDYLTTS 241 (247)
T ss_pred CHHHHHHHH
Confidence 665555443
No 426
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=54.04 E-value=2e+02 Score=31.43 Aligned_cols=30 Identities=17% Similarity=0.048 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 863 WLMGAKSKWLAGDVPAARGILSLAFQANPN 892 (1278)
Q Consensus 863 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 892 (1278)
.+.+|++....+++++...++.+++...|.
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 345566666666666666666666666554
No 427
>KOG2114|consensus
Probab=53.45 E-value=6e+02 Score=32.66 Aligned_cols=52 Identities=13% Similarity=0.113 Sum_probs=29.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy3224 1186 KLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLA 1240 (1278)
Q Consensus 1186 ~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~ 1240 (1278)
..|.+..+++.++.+.++. .++.+..|..+..+....+..+...+...++++
T Consensus 713 ~~~~q~~d~E~~it~~~~~---g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~ 764 (933)
T KOG2114|consen 713 LYFQQISDPETVITLCERL---GKEDPSLWLHALKYFVSEESIEDCYEIVYKVLE 764 (933)
T ss_pred HHHHHhhChHHHHHHHHHh---CccChHHHHHHHHHHhhhcchhhHHHHHHHHHH
Confidence 3455566666666655544 344566666666666666655555554444444
No 428
>KOG4422|consensus
Probab=52.87 E-value=4.5e+02 Score=30.98 Aligned_cols=66 Identities=14% Similarity=-0.084 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q psy3224 1035 VPLWIMLANLEERRKMLIKARSVLEKGRLRN---PNCAE--LWLAAIRVEIRAGLKDIANTMMAKALQECP 1100 (1278)
Q Consensus 1035 ~~~~~~la~l~~~~g~~~~A~~~l~kal~~~---p~~~~--~~~~l~~~~~~~g~~~~A~~~~~kal~~~P 1100 (1278)
+......+.++.+.|.+++|-+.|.-.+... |..+. +...+...........+|+.+++-++..+-
T Consensus 522 ~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 522 ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 4555666777788888888888887765433 33332 234555555666777777777777765543
No 429
>PF12854 PPR_1: PPR repeat
Probab=51.23 E-value=33 Score=24.63 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 964 APTPRVMIQSAKLEWCLDNLERALQLLDE 992 (1278)
Q Consensus 964 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~ 992 (1278)
.|+...|..+...+.+.|+.++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 35556666666666666666666666654
No 430
>KOG0686|consensus
Probab=51.11 E-value=4.7e+02 Score=30.69 Aligned_cols=94 Identities=15% Similarity=0.038 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----C----ChHH
Q psy3224 935 EIWLAAVKLESENNEYERARRLLAKARASAPT----PRVMIQSAKLEWCLDNLERALQLLDEAIKVF----P----DFAK 1002 (1278)
Q Consensus 935 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~----p----~~~~ 1002 (1278)
.++..++..|...|+++.|++.|.++...+.+ ...|+++..+-...|+|.....+..++.+.- . -.+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 34567788888899999999999998777765 3677777777788888888777777765541 0 0123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 1003 LWMMKGQIEEQKNLLDKAHDTFSQAI 1028 (1278)
Q Consensus 1003 ~~~~la~~~~~~g~~~~A~~~~~~al 1028 (1278)
+....|.+....+++..|...|-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44444555555567777777665543
No 431
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=49.63 E-value=6e+02 Score=31.53 Aligned_cols=102 Identities=16% Similarity=0.119 Sum_probs=48.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 947 NNEYERARRLLAKARASAPTPRVMIQSAKLEWCLD--NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTF 1024 (1278)
Q Consensus 947 ~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g--~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 1024 (1278)
.++.++|+..+++.....+........+.++...+ ....-..+|+.+++.+|........+..++.. ...+.+++
T Consensus 322 ~~~l~eal~~~e~~c~~~~~~lpi~~~~~lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Ll 398 (547)
T PF14929_consen 322 GGRLKEALNELEKFCISSTCALPIRLRAHLLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLL 398 (547)
T ss_pred cccHHHHHHHHHHhccCCCccchHHHHHHHHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHH
Confidence 35666666665554433333333333344443333 45555666666666666655554444444333 22233333
Q ss_pred HH---HHHhCCCCHHHHHHHHHHHHH-cCCHH
Q psy3224 1025 SQ---AIKKCPHSVPLWIMLANLEER-RKMLI 1052 (1278)
Q Consensus 1025 ~~---al~~~p~~~~~~~~la~l~~~-~g~~~ 1052 (1278)
+- -+...| ...+|..++.++.+ .++++
T Consensus 399 e~i~~~l~~~~-s~~iwle~~~~~l~~~~~~~ 429 (547)
T PF14929_consen 399 EMIALHLDLVP-SHPIWLEFVSCFLKNPSRFE 429 (547)
T ss_pred HHHHHHhhcCC-CchHHHHHHHHHHhcccccc
Confidence 31 123333 33466666665555 34443
No 432
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=49.59 E-value=48 Score=37.08 Aligned_cols=62 Identities=13% Similarity=0.023 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 986 ALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047 (1278)
Q Consensus 986 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~ 1047 (1278)
|..+|.+|+...|.++..|..+|.++...|+.-.|.-.|-+++-...-.+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666655553322234445555544444
No 433
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=49.24 E-value=28 Score=25.90 Aligned_cols=27 Identities=15% Similarity=0.446 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1003 LWMMKGQIEEQKNLLDKAHDTFSQAIK 1029 (1278)
Q Consensus 1003 ~~~~la~~~~~~g~~~~A~~~~~~al~ 1029 (1278)
++..+|.+-...++|++|..-|.++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344444444455555555555554443
No 434
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=48.62 E-value=4.2e+02 Score=29.46 Aligned_cols=171 Identities=9% Similarity=-0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCcHH
Q psy3224 842 RESLETLLQKAVAH--CPKSEVLWLMGAKSKWL--AGDVPAARGILSLAFQANPNS------EEIWLAAVKLESENNEYE 911 (1278)
Q Consensus 842 ~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~--~g~~~~A~~~l~~al~~~p~~------~~~~~~la~l~~~~g~~~ 911 (1278)
.++...-+-+.+.. +|.....|+.+-+-... .+.-++-++-+.+.++....+ .++|..++..|.+.++.+
T Consensus 53 ~d~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 53 IDKCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred HHhhhhHHHHHHHhccCCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHH
Q psy3224 912 RARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT----PRVMIQSAKLEWCLDNLERAL 987 (1278)
Q Consensus 912 ~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~la~~~~~~g~~~~A~ 987 (1278)
.+.+.+.+...........-+-.-.-..+|.+|....-..+.++....+++...+ ...-...|.......++.+|.
T Consensus 133 ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa 212 (412)
T COG5187 133 NGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAA 212 (412)
T ss_pred hHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHH
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHH
Q psy3224 988 QLLDEAIKVFPDFAKLWMMKGQIEE 1012 (1278)
Q Consensus 988 ~~l~~al~~~p~~~~~~~~la~~~~ 1012 (1278)
.++-.++..+.....+-+.-+.-|.
T Consensus 213 ~Ll~d~l~tF~S~El~sY~~~vrYa 237 (412)
T COG5187 213 ILLSDILPTFESSELISYSRAVRYA 237 (412)
T ss_pred HHHHHHhccccccccccHHHHHHHH
No 435
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=48.37 E-value=46 Score=37.22 Aligned_cols=62 Identities=13% Similarity=-0.006 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 1020 AHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIR 1081 (1278)
Q Consensus 1020 A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~ 1081 (1278)
|+.+|.+|+...|.++..|..+|.++...|+.-.|+-+|-+++-...-.+.+..++..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666554433334444444444443
No 436
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=48.25 E-value=5.1e+02 Score=30.34 Aligned_cols=43 Identities=21% Similarity=0.127 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy3224 877 PAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAK 919 (1278)
Q Consensus 877 ~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~ 919 (1278)
-+|+.+++.++...|.+..+.+.++.+|...|-...|...|..
T Consensus 200 ~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 200 LQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3444555555555555555555555555555555555555543
No 437
>KOG0687|consensus
Probab=48.11 E-value=2.6e+02 Score=31.65 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=59.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHh
Q psy3224 669 DRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINR-EHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKH 747 (1278)
Q Consensus 669 ~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~-~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~ 747 (1278)
-.++|...++.|.+.|+.+.|.+.+.+.....-..|...+. ...+..+..+....-+..-......+++.+.+-..+..
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNR 182 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNR 182 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhh
Confidence 35788999999999999998888888777653333333332 22333333333333233333333333443333222223
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 748 TWMEDAESCANQGAYECARAIYAQALATFPS 778 (1278)
Q Consensus 748 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 778 (1278)
.-...|-......+|.+|-.+|-..+..+..
T Consensus 183 lKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 183 LKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 3333455555556677777777666655443
No 438
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=47.90 E-value=33 Score=26.45 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 750 MEDAESCANQGAYECARAIYAQALA 774 (1278)
Q Consensus 750 ~~la~~~~~~g~~~~A~~~~~~al~ 774 (1278)
+.+|..|...|+.+.|+.++++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4566677777777777777777664
No 439
>KOG0686|consensus
Probab=47.29 E-value=5.3e+02 Score=30.25 Aligned_cols=61 Identities=11% Similarity=-0.018 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy3224 861 VLWLMGAKSKWLAGDVPAARGILSLAFQANPNS---EEIWLAAVKLESENNEYERARRLLAKAR 921 (1278)
Q Consensus 861 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~l~~~~g~~~~A~~~l~~al 921 (1278)
.++..++..|...|+++.|+..|.++-.-|... ...|+.+..+..-.++|.....+..++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 467788899999999999999999987777653 5677888888888899988888888774
No 440
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.74 E-value=3.7e+02 Score=31.81 Aligned_cols=54 Identities=11% Similarity=0.104 Sum_probs=26.3
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCChHH--HHHHHHH--HHHHcCCHHHHHHHHHHHHHh
Q psy3224 977 EWCLDNLERALQLLDEAIKVFPDFAK--LWMMKGQ--IEEQKNLLDKAHDTFSQAIKK 1030 (1278)
Q Consensus 977 ~~~~g~~~~A~~~l~~al~~~p~~~~--~~~~la~--~~~~~g~~~~A~~~~~~al~~ 1030 (1278)
++..++|..|..++..+...-|.... .+..+.. .++..-++.+|.+.++..+..
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455555555555555554222222 2222222 235556666666666665543
No 441
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=46.40 E-value=4.9e+02 Score=29.60 Aligned_cols=60 Identities=20% Similarity=0.186 Sum_probs=26.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 714 KEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQAL 773 (1278)
Q Consensus 714 ~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 773 (1278)
..|..+...+.++.|...++..+....+..++....+.+++++...|.++-|..+|+...
T Consensus 218 ~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~lA~~ll~~L~ 277 (301)
T TIGR03362 218 EEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAELAQQLYAALD 277 (301)
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444555555555555444333222223333333444444444455555544444443
No 442
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=44.71 E-value=36 Score=26.27 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=20.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q psy3224 1182 LAVSKLFWCENKNQKCREWFNRTVK 1206 (1278)
Q Consensus 1182 ~~lg~~~~~~g~~~~A~~~~~kal~ 1206 (1278)
+.+|..|...|+++.|++.++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4678888888888888888888884
No 443
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=43.91 E-value=4e+02 Score=31.55 Aligned_cols=57 Identities=23% Similarity=0.079 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHhcCcHHHHHHHHHHHH
Q psy3224 865 MGAKSKWLAGDVPAARGILSLAFQANPNSEE--IWLAA--VKLESENNEYERARRLLAKAR 921 (1278)
Q Consensus 865 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~--~~~~l--a~l~~~~g~~~~A~~~l~~al 921 (1278)
..+..++..++|..|..+|..+...-|.+.. .+..+ +..+...-++.+|...++...
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3344445566666666666666654333322 22222 222334555556666665544
No 444
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=43.55 E-value=1.9e+02 Score=32.34 Aligned_cols=36 Identities=19% Similarity=0.090 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy3224 1051 LIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKD 1086 (1278)
Q Consensus 1051 ~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~ 1086 (1278)
.+.|...+.+++.++|....++..+..+-...|...
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~ 150 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPD 150 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCch
Confidence 356777777777777777766666666655555443
No 445
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=42.44 E-value=36 Score=23.11 Aligned_cols=25 Identities=12% Similarity=0.224 Sum_probs=13.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 937 WLAAVKLESENNEYERARRLLAKAR 961 (1278)
Q Consensus 937 ~~~la~~~~~~g~~~~A~~~l~~al 961 (1278)
|..+...|.+.|++++|..+|+++.
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 3444455555555555555555544
No 446
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=42.42 E-value=1.3e+02 Score=26.51 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=21.4
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH---HHHHHcCCHHHHHHH
Q psy3224 1013 QKNLLDKAHDTFSQAIKKCPHSVPLWIMLA---NLEERRKMLIKARSV 1057 (1278)
Q Consensus 1013 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la---~l~~~~g~~~~A~~~ 1057 (1278)
..++.++|+..+.++++..++.+.-|..+| .++...|++.+.+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444444332 333444444444443
No 447
>PRK12798 chemotaxis protein; Reviewed
Probab=42.08 E-value=6.6e+02 Score=29.79 Aligned_cols=60 Identities=13% Similarity=-0.048 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----HHcCCHHHHHHHHHHH
Q psy3224 1001 AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLE-----ERRKMLIKARSVLEKG 1061 (1278)
Q Consensus 1001 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~-----~~~g~~~~A~~~l~ka 1061 (1278)
..+|+.+++.-.-.|+.+-|.-.-.+++.+.... ..-...+.+| .-..+++.|+..+...
T Consensus 257 ~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 257 RELYLRIARAALIDGKTELARFASERALKLADPD-SADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 4667777777777777777777777777766332 1222222222 2345566666666543
No 448
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.41 E-value=3e+02 Score=30.50 Aligned_cols=130 Identities=12% Similarity=0.081 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH------HHcCCHHHH
Q psy3224 983 LERALQLLDEAIKVFPDFAKLWMMKGQIEEQK--NLLDKAHDTFSQAIKKCPHSVPLWIMLANLE------ERRKMLIKA 1054 (1278)
Q Consensus 983 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~l~------~~~g~~~~A 1054 (1278)
++.-+.++..+++.+|.+..+|...-.++... .++..-..+.++.+..++.|...|...-.+. .....+..-
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 45556778889999999999999888887655 5677778888899999999888887543333 222333344
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHH---HHHHcCC------HHHHHHHHHHHHHHCCCcHHHHHHHHhc
Q psy3224 1055 RSVLEKGRLRNPNCAELWLAAIR---VEIRAGL------KDIANTMMAKALQECPNAGILWAEAIFL 1112 (1278)
Q Consensus 1055 ~~~l~kal~~~p~~~~~~~~l~~---~~~~~g~------~~~A~~~~~kal~~~P~~~~~~~~~~~~ 1112 (1278)
.++-..++..++.|..+|..... .....|+ +++-+++.-.++...|++..+|...-.+
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 55556677888988888877733 2233443 3444555666667788888888754433
No 449
>KOG2063|consensus
Probab=39.98 E-value=9.7e+02 Score=31.57 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 936 IWLAAVKLESENNEYERARRLLAKARASA 964 (1278)
Q Consensus 936 ~~~~la~~~~~~g~~~~A~~~l~~al~~~ 964 (1278)
-+..++.+|...|..++|++++.......
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~ 534 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDED 534 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccc
Confidence 47788999999999999999999887743
No 450
>KOG4014|consensus
Probab=39.93 E-value=4.5e+02 Score=27.28 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=39.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH----hCCHHHHHHHHHHHHHh
Q psy3224 1187 LFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEII----NGTEETQAEVKKRCLAA 1241 (1278)
Q Consensus 1187 ~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~----~G~~~~A~~~l~ka~~~ 1241 (1278)
.+.-..+.++|.++--+|-++. ++.+..++.+++.. -.+.++|+.+-+++.++
T Consensus 177 ~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 177 LGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred hhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 3445678999999999998764 67788888887753 23578888888888653
No 451
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.62 E-value=1.8e+02 Score=34.49 Aligned_cols=29 Identities=21% Similarity=0.107 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 1000 FAKLWMMKGQIEEQKNLLDKAHDTFSQAI 1028 (1278)
Q Consensus 1000 ~~~~~~~la~~~~~~g~~~~A~~~~~~al 1028 (1278)
...+++.+|.+|..+++|.+|+.+|..++
T Consensus 163 ~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 163 HISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred heehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888888888888877766
No 452
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=38.62 E-value=94 Score=32.70 Aligned_cols=49 Identities=24% Similarity=0.232 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 950 YERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFP 998 (1278)
Q Consensus 950 ~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 998 (1278)
.+..++..++.+...|++.++..++.++...|+.++|.....++...+|
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445566667777778888888888888888888888888888888888
No 453
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=37.89 E-value=4.1e+02 Score=26.18 Aligned_cols=111 Identities=12% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH---------------------------------HHHHHHHcCCH
Q psy3224 750 MEDAESCANQGAYECARAIYAQALATFPSKKSIWLR---------------------------------AAYFEKNHGTR 796 (1278)
Q Consensus 750 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~---------------------------------la~~~~~~g~~ 796 (1278)
+.-|+-....|..++..++..+.+...+-...-|.- ...++...|..
T Consensus 6 LmeAK~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~ 85 (161)
T PF09205_consen 6 LMEAKERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKL 85 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT--
T ss_pred HHHHHHHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcch
Q ss_pred HHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH
Q psy3224 797 ESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDV 876 (1278)
Q Consensus 797 ~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~ 876 (1278)
.+ ..-......-..|..++-.+++....+....++.+.+.+|.+|.+.|+.
T Consensus 86 se-----------------------------~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~ 136 (161)
T PF09205_consen 86 SE-----------------------------YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNT 136 (161)
T ss_dssp -H-----------------------------HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-H
T ss_pred HH-----------------------------HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcch
Q ss_pred HHHHHHHHHHHHh
Q psy3224 877 PAARGILSLAFQA 889 (1278)
Q Consensus 877 ~~A~~~l~~al~~ 889 (1278)
.+|-+++.+|-+.
T Consensus 137 r~~~ell~~ACek 149 (161)
T PF09205_consen 137 REANELLKEACEK 149 (161)
T ss_dssp HHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHh
No 454
>KOG2114|consensus
Probab=36.59 E-value=1.1e+03 Score=30.63 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=35.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy3224 1042 ANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQE 1098 (1278)
Q Consensus 1042 a~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~ 1098 (1278)
...+.+..+++.++.+.+.. .+.+|.+|.....+....+..+...+...++++.
T Consensus 712 ~~~~~q~~d~E~~it~~~~~---g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~ 765 (933)
T KOG2114|consen 712 MLYFQQISDPETVITLCERL---GKEDPSLWLHALKYFVSEESIEDCYEIVYKVLEA 765 (933)
T ss_pred HHHHHHhhChHHHHHHHHHh---CccChHHHHHHHHHHhhhcchhhHHHHHHHHHHH
Confidence 34455666777776666554 5567778888877777777766666666666554
No 455
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.80 E-value=7.2e+02 Score=28.46 Aligned_cols=28 Identities=14% Similarity=-0.074 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 748 TWMEDAESCANQGAYECARAIYAQALAT 775 (1278)
Q Consensus 748 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 775 (1278)
+.+.+|--|....+++.|+--|.++...
T Consensus 127 ~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 127 INYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 4445566677777777777777776554
No 456
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=35.71 E-value=54 Score=22.16 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 749 WMEDAESCANQGAYECARAIYAQALA 774 (1278)
Q Consensus 749 ~~~la~~~~~~g~~~~A~~~~~~al~ 774 (1278)
|..+...+.+.|++++|..+|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45555666666666666666665543
No 457
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=35.50 E-value=69 Score=22.14 Aligned_cols=27 Identities=11% Similarity=0.075 Sum_probs=15.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 937 WLAAVKLESENNEYERARRLLAKARAS 963 (1278)
Q Consensus 937 ~~~la~~~~~~g~~~~A~~~l~~al~~ 963 (1278)
|..+...|.+.|++++|..+|.++...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 445555566666666666666665543
No 458
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.92 E-value=7e+02 Score=27.71 Aligned_cols=27 Identities=19% Similarity=0.046 Sum_probs=18.5
Q ss_pred hHhhHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 745 RKHTWMEDAESCANQGAYECARAIYAQ 771 (1278)
Q Consensus 745 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 771 (1278)
.+.++..+|..+++.|++..|+..|-.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 356777788888888888777766643
No 459
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=33.86 E-value=4.5e+02 Score=25.49 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=41.2
Q ss_pred cchHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHhcCCchHHHHHHHHHHH
Q psy3224 494 INDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARLQPVDTARAVIAQAVR 573 (1278)
Q Consensus 494 ~g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~L~~~~~A~~~l~kaL~ 573 (1278)
..++.+|...++++++.+|.+.- .+.-|-+..--=.++.|-+.+...++..--+ . .....-+.+++.|.+
T Consensus 2 ~~nf~kAl~~L~~a~~~~~~~~~-~~~~g~IqrFE~t~ELaWK~lK~~L~~~G~~--------~-~~~~spr~~ir~A~~ 71 (123)
T TIGR01987 2 FESFEQALMQLSDANWFDLTNDI-TIIDGAIQKFEFTFELAWKLMKRYLAQEGIN--------D-IGAYSPKDVLKEAFR 71 (123)
T ss_pred HHHHHHHHHHHHHHHhcCccchH-HHHHHHHHHhhhHHHHHHHHHHHHHHHcCCc--------c-cccCCHHHHHHHHHH
Confidence 35788888888888888665443 1233333311113444544444444332100 0 001112445555554
Q ss_pred hC-CCCHHHHHHHHHc
Q psy3224 574 HI-PTSVRIWIKAADL 588 (1278)
Q Consensus 574 ~~-P~s~~lw~~~~~l 588 (1278)
.. -.+...|..+...
T Consensus 72 ~glI~d~~~W~~ml~~ 87 (123)
T TIGR01987 72 AGLIGDESLWIAMLDD 87 (123)
T ss_pred cCCcCCHHHHHHHHHH
Confidence 43 2456677776653
No 460
>KOG0687|consensus
Probab=33.80 E-value=7.7e+02 Score=28.16 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPD 999 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 999 (1278)
..+-...|.......++.+|..+|-.++..+..
T Consensus 181 NRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 181 NRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 344444455555667777777777777665543
No 461
>KOG2034|consensus
Probab=33.03 E-value=1.2e+03 Score=30.30 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=13.1
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q psy3224 611 RLWKAAVELEDPEDARILL 629 (1278)
Q Consensus 611 ~Lw~al~~l~~~e~A~~~l 629 (1278)
+.|+.|+..|.|+.|+++-
T Consensus 363 ~vWk~yLd~g~y~kAL~~a 381 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIA 381 (911)
T ss_pred HHHHHHHhcchHHHHHHhc
Confidence 5777777777777666543
No 462
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=32.04 E-value=76 Score=37.47 Aligned_cols=65 Identities=14% Similarity=0.159 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKIDPDLG-DAWAYFYKFEIINGTEETQAEVKKRCLAAEPK 1244 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~-d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~ 1244 (1278)
+++.+|.+|+..++|.+|++.|..++..-.... .....-++...-....++.-.++--|..+.|.
T Consensus 166 ~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 166 TYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 889999999999999999999999986322111 11111112222233444555555556666664
No 463
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=31.92 E-value=2.4e+02 Score=28.12 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=31.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC
Q psy3224 965 PTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN 1015 (1278)
Q Consensus 965 p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 1015 (1278)
......+..+.-....|++.-|..+.+.++..+|++..+....+.++.+.|
T Consensus 68 GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 344444555555566777777777777777777777777777776665543
No 464
>KOG4521|consensus
Probab=31.24 E-value=1.5e+03 Score=30.65 Aligned_cols=29 Identities=14% Similarity=-0.086 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q psy3224 894 EEIWLAAVKLESENNEYERARRLLAKARA 922 (1278)
Q Consensus 894 ~~~~~~la~l~~~~g~~~~A~~~l~~al~ 922 (1278)
+...+.+|..+...|...+|+.+|.+|..
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~S 948 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALS 948 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhh
Confidence 34456777778888888888888888763
No 465
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=31.18 E-value=5e+02 Score=25.25 Aligned_cols=77 Identities=16% Similarity=0.242 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhhhCC-cccc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHH
Q psy3224 688 MVDKIIDRALSSLSANG-VEIN---REHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYE 763 (1278)
Q Consensus 688 ~A~~il~~al~~~~~~~-~~~~---~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~ 763 (1278)
....+++++++.+.+.. ...+ ...|+..|..+ .....+|..+...++... .+..|..+|..+...|++.
T Consensus 44 ~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~-~AlfYe~~A~~lE~~g~~~ 116 (125)
T smart00777 44 GLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC------DEPRELFQFLYSKGIGTK-LALFYEEWAQLLEAAGRYK 116 (125)
T ss_pred hHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchh-hHHHHHHHHHHHHHcCCHH
Confidence 34555555555433221 1111 34677776654 335667777766655432 2556777777777788888
Q ss_pred HHHHHHHH
Q psy3224 764 CARAIYAQ 771 (1278)
Q Consensus 764 ~A~~~~~~ 771 (1278)
+|.++|+.
T Consensus 117 ~A~~iy~~ 124 (125)
T smart00777 117 KADEVYQL 124 (125)
T ss_pred HHHHHHHc
Confidence 88777753
No 466
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=30.48 E-value=1.7e+02 Score=25.53 Aligned_cols=17 Identities=12% Similarity=0.104 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHhCCCC
Q psy3224 593 KAKRRVYRKALEHIPNS 609 (1278)
Q Consensus 593 ~~A~~ll~rAle~~P~s 609 (1278)
..|..+..+|++++-..
T Consensus 4 ~~A~~~a~~AVe~D~~g 20 (75)
T cd02682 4 EMARKYAINAVKAEKEG 20 (75)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34667777787776544
No 467
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=30.19 E-value=7.9e+02 Score=27.58 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q psy3224 876 VPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRL 916 (1278)
Q Consensus 876 ~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~ 916 (1278)
.+.|...+.+++.++|....++..+..+....|...=-..+
T Consensus 115 ~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~WL~~l 155 (277)
T PF13226_consen 115 CDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDWLAAL 155 (277)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchHHHHH
Confidence 46778888888888888888888887777766666543333
No 468
>PTZ00046 rifin; Provisional
Probab=29.95 E-value=76 Score=36.42 Aligned_cols=51 Identities=24% Similarity=0.423 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCc--hhhhhhhhhhhccC
Q psy3224 320 EADMIYEEIDKRMDEKRKDYREKRLREELERYRQERP--KIQQQFSDLKRGLV 370 (1278)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~l~~~l~ 370 (1278)
..-.=|++-|+||.++|++.+|+..++=..-...++- ...++|+.|-....
T Consensus 67 qTsQRF~EYdERM~~kRqkcKeqCDKeIQKIILKDKlEKeL~ekf~tL~TdI~ 119 (358)
T PTZ00046 67 QTSQRFEEYDERMKEKRQKCKEQCDKEIQKIILKDKLEKELMEKFATLQTDIQ 119 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHhhhhhcccCCc
Confidence 3445699999999999999988754332222111111 14567777655443
No 469
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=29.58 E-value=3e+02 Score=31.59 Aligned_cols=72 Identities=17% Similarity=0.110 Sum_probs=49.2
Q ss_pred HHcCC-hhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q psy3224 720 EKAGS-VHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKK-SIWLRAAYFEK 791 (1278)
Q Consensus 720 ~~~g~-~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~-~~~~~la~~~~ 791 (1278)
...|. .++...++..++..-|+...-...|+-+|+++...|.++..+.+|++|+.....-. ++...++.++.
T Consensus 113 i~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 113 IEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 34444 34566666666666555544567899999999999999999999999998766533 34444555544
No 470
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=29.44 E-value=1e+02 Score=21.78 Aligned_cols=28 Identities=7% Similarity=0.319 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhc----CCHHHHHHHHHHHHhh
Q psy3224 1180 VLLAVSKLFWCE----NKNQKCREWFNRTVKI 1207 (1278)
Q Consensus 1180 ~l~~lg~~~~~~----g~~~~A~~~~~kal~~ 1207 (1278)
+++.+|.+|..- .+..+|..+|+++.+.
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 677888887632 3888999999998764
No 471
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=29.24 E-value=1e+02 Score=21.19 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=16.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 749 WMEDAESCANQGAYECARAIYAQALA 774 (1278)
Q Consensus 749 ~~~la~~~~~~g~~~~A~~~~~~al~ 774 (1278)
|..+...+.+.|++++|..+|.+...
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45555666666666666666666554
No 472
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=28.40 E-value=1.3e+02 Score=20.85 Aligned_cols=26 Identities=12% Similarity=0.224 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 937 WLAAVKLESENNEYERARRLLAKARA 962 (1278)
Q Consensus 937 ~~~la~~~~~~g~~~~A~~~l~~al~ 962 (1278)
|..+...+.+.|+++.|..+|..+.+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555555566666666666665544
No 473
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=28.18 E-value=1.8e+02 Score=30.53 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=24.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 987 LQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032 (1278)
Q Consensus 987 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 1032 (1278)
++..++.+...|+ +.++..++.++...|+.++|.....++....|
T Consensus 131 ~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 131 IEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444445554 55555555555555555555555555555555
No 474
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=27.89 E-value=1.4e+02 Score=29.69 Aligned_cols=52 Identities=17% Similarity=0.075 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCH
Q psy3224 1177 DPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTE 1228 (1278)
Q Consensus 1177 ~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~ 1228 (1278)
..+.+...+.-.+..|++.-|..+.+.++..+|+|.++....+.++.++|..
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 3446778888888999999999999999999999999988888888777643
No 475
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=27.03 E-value=4e+02 Score=23.36 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=9.8
Q ss_pred HHHHHHHHHHhCCCcHH
Q psy3224 845 LETLLQKAVAHCPKSEV 861 (1278)
Q Consensus 845 A~~~~~~al~~~P~~~~ 861 (1278)
|++++.+++...|+++.
T Consensus 32 aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 32 AIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHHHHhCCChHH
Confidence 55555566666666544
No 476
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=27.03 E-value=1.4e+02 Score=26.42 Aligned_cols=30 Identities=43% Similarity=0.504 Sum_probs=25.2
Q ss_pred HhhhHHHHHHHHHHHHHHHhcCCchhhhhh
Q psy3224 165 EKRKDYREKRLREELERYRQERPKIQQQFS 194 (1278)
Q Consensus 165 ~~r~~~~~~~~~~~~~~~~~~~~~i~~qf~ 194 (1278)
+.|.++-..++++=++..|+.|-.+|+|+.
T Consensus 46 E~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 46 EQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 567788899999999999998888888775
No 477
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=26.88 E-value=95 Score=27.13 Aligned_cols=14 Identities=43% Similarity=0.636 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHHHH
Q psy3224 981 DNLERALQLLDEAI 994 (1278)
Q Consensus 981 g~~~~A~~~l~~al 994 (1278)
|++++|+.+|..++
T Consensus 20 gny~eA~~lY~~al 33 (75)
T cd02680 20 GNAEEAIELYTEAV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 34444444444433
No 478
>PF07840 FadR_C: FadR C-terminal domain; InterPro: IPR008920 Bacteria regulate membrane fluidity by manipulating the relative levels of saturated and unsaturated fatty acids within the phospholipids of their membrane bilayers. In Escherichia coli, the transcription factor, FadR, functions as a switch that co-ordinately regulates the machinery required for fatty acid beta-oxidation and the expression of a key enzyme in fatty acid biosynthesis. This single repressor controls the transcription of the whole fad regulon []. Binding of fadR is specifically inhibited by long chain fatty acyl-CoA compounds. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal winged-helix domain binds DNA (IPR000524 from INTERPRO), and the C-terminal domain binds acyl-CoA []. The binding of acyl-CoA to the C-terminal domain results in a conformational change that affects the DNA binding affinity of the N-terminal domain []. FadR is a member of the GntR family of bacterial transcription regulators. The DNA-binding domain is well conserved for this family, whereas the C-terminal effector-binding domain (IPR011711 from INTERPRO) is more variable, and is consequently used to define the GntR subfamilies []. The FadR group is the largest subgroup, and is characterised by an all-helical C-terminal domain composed of 6 to 7 alpha helices []. This entry represents the C-terminal domain of FadR.; GO: 0000062 fatty-acyl-CoA binding, 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0019217 regulation of fatty acid metabolic process; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A.
Probab=26.79 E-value=5.5e+02 Score=26.25 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHH-hcCCchHHHHHHH----HHHHh
Q psy3224 500 ARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAA-RLQPVDTARAVIA----QAVRH 574 (1278)
Q Consensus 500 A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a-~L~~~~~A~~~l~----kaL~~ 574 (1278)
...+++...+.++..++.++...--. +..-+-.++..|++.+|..+...+..+ .+++..+|-..|+ +.+.+
T Consensus 8 gLnIL~TL~rld~~~~p~li~~LLsa----Rt~is~iyir~Avk~np~~~~~~l~~~~~l~d~aeafa~fDy~l~~~la~ 83 (164)
T PF07840_consen 8 GLNILETLARLDHDSPPELIDNLLSA----RTNISPIYIRYAVKNNPEKVLEILAELDKLEDDAEAFAEFDYQLFRRLAF 83 (164)
T ss_dssp -GGGHHHHHHHTCTTHHHHHHHHHHH----HHHHHHHHHHHHHHH-HHHHHHHHHCCTTS-SSHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHhCccccHHHHHHHHHH----HHHHHHHHHHHHHHHCHHHHHHHHHHhhhcccCHHHHHHHhHHHHHHHHH
Confidence 35678888899999887665432221 223456788899999987764444333 2455555544333 34444
Q ss_pred CCCCH
Q psy3224 575 IPTSV 579 (1278)
Q Consensus 575 ~P~s~ 579 (1278)
..+++
T Consensus 84 ~S~Np 88 (164)
T PF07840_consen 84 ASGNP 88 (164)
T ss_dssp HTS-H
T ss_pred hcCCC
Confidence 55555
No 479
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=26.61 E-value=64 Score=22.11 Aligned_cols=16 Identities=50% Similarity=0.819 Sum_probs=9.9
Q ss_pred CCCCCCCCCChHHHHHH
Q psy3224 139 LFNKDPYDKDDEEADMI 155 (1278)
Q Consensus 139 l~~~~~~~~~d~ead~i 155 (1278)
||+++ =+++|+||.+|
T Consensus 1 LFGSd-dEeed~ea~r~ 16 (28)
T PF10587_consen 1 LFGSD-DEEEDEEAERI 16 (28)
T ss_pred CCCCc-cccccHHHHHH
Confidence 67543 23478888776
No 480
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=26.57 E-value=7.6e+02 Score=28.77 Aligned_cols=139 Identities=13% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy3224 957 LAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVP 1036 (1278)
Q Consensus 957 l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 1036 (1278)
++++++.+.+..+......+ ..+......++..+.+.+|+..++|..+..++.+..-.++-.+.++.++..-.....
T Consensus 82 ~erILed~aDeKl~~l~~~L---k~~~~~~~~ll~~arq~FpD~SDl~~aLreLl~r~kL~~~~~~~le~al~~Le~e~~ 158 (372)
T PRK15338 82 FERVLEDEALPKAKQILKLI---SVHGGALEEFLRQARKLFPDPSDLVLVLRELLRRKQLEEIVRKKLESLLKHVEEETD 158 (372)
T ss_pred HHHHhccchHHHHHHHHHHH---HhcCCCHHHHHHHHHHhCCCHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHhhcC
Q ss_pred H--------HHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q psy3224 1037 L--------WIMLANLEERRKML--IKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQEC 1099 (1278)
Q Consensus 1037 ~--------~~~la~l~~~~g~~--~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~ 1099 (1278)
. -...+..+...++. ..-+..|...+..+-.-..+|..+..-| ...+.+..+.++.++|..+
T Consensus 159 ~K~ikAGINvAL~Ak~Fs~~~~lsa~~LR~lYR~Fl~~d~~~~~iY~~Wieey-g~~~R~~il~Fl~~AL~~D 230 (372)
T PRK15338 159 PKTLKAGINCALKARLFGKALSLKPGLLRASYRQFLQSESHEVEIYSDWIASY-GYQRRLVVLDFIEGSLLTD 230 (372)
T ss_pred cHHHHhcCcHHHHHHHHHhhcCCCHHHHHHHHHHHHhccCcHHHHHHHHHHHh-CccHHHHHHHHHHHHHHhH
No 481
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=25.78 E-value=1.2e+02 Score=21.89 Aligned_cols=29 Identities=7% Similarity=0.396 Sum_probs=19.8
Q ss_pred HHHHHHH--HHHHhcC-----CHHHHHHHHHHHHhh
Q psy3224 1179 HVLLAVS--KLFWCEN-----KNQKCREWFNRTVKI 1207 (1278)
Q Consensus 1179 ~~l~~lg--~~~~~~g-----~~~~A~~~~~kal~~ 1207 (1278)
.+.+.+| .+|..-. ++++|..||+++.+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 4667778 5443222 578999999998764
No 482
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=25.67 E-value=93 Score=35.65 Aligned_cols=51 Identities=25% Similarity=0.439 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCc--hhhhhhhhhhhccC
Q psy3224 320 EADMIYEEIDKRMDEKRKDYREKRLREELERYRQERP--KIQQQFSDLKRGLV 370 (1278)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~l~~~l~ 370 (1278)
..-.=|++-|+||.++|++.+|+..++=..-...++- ...++|+.|-....
T Consensus 70 qTsQRF~EYdERM~~kRqKcKeqCDKeIQKIILKDKiEKeL~ekf~tL~TdI~ 122 (353)
T TIGR01477 70 QTSQRFEEYDERMQEKRQKCKEQCDKEIQKIILKDKLEKELTEKFSTLQTDIQ 122 (353)
T ss_pred HHHHHHHhHHHHHHHhhhhhHHhhchHHHHHHHHHHHHHHHHHhhhhcccCCc
Confidence 3445689999999999999888754332221111111 13457777655443
No 483
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=25.39 E-value=94 Score=27.17 Aligned_cols=34 Identities=29% Similarity=0.454 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 983 LERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKC 1031 (1278)
Q Consensus 983 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 1031 (1278)
.++|+.++.+++..+ ..|++++|+.+|..+++.+
T Consensus 3 l~kai~Lv~~A~~eD---------------~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 3 LERAHFLVTQAFDED---------------EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHHHhh---------------HhhhHHHHHHHHHHHHHHH
Confidence 456666666665543 4588888888888887654
No 484
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=25.31 E-value=1.1e+03 Score=27.16 Aligned_cols=81 Identities=10% Similarity=0.090 Sum_probs=53.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy3224 714 KEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNH 793 (1278)
Q Consensus 714 ~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~ 793 (1278)
.....+...|....|..+.... . . + ....|......+...++|++-..+... + .++-.|.-.+.++...
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~F-k--v--~-dkrfw~lki~aLa~~~~w~eL~~fa~s--k---KsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEF-K--V--P-DKRFWWLKIKALAENKDWDELEKFAKS--K---KSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHc-C--C--c-HHHHHHHHHHHHHhcCCHHHHHHHHhC--C---CCCCChHHHHHHHHHC
Confidence 3445566677777766654433 1 1 2 256788888888888888876665432 2 3345566677778888
Q ss_pred CCHHHHHHHHHH
Q psy3224 794 GTRESLETLLQK 805 (1278)
Q Consensus 794 g~~~~A~~~l~~ 805 (1278)
|...+|..++.+
T Consensus 251 ~~~~eA~~yI~k 262 (319)
T PF04840_consen 251 GNKKEASKYIPK 262 (319)
T ss_pred CCHHHHHHHHHh
Confidence 888888877777
No 485
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=25.27 E-value=8.4e+02 Score=25.88 Aligned_cols=60 Identities=13% Similarity=0.181 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 751 EDAESCANQGAYECARAIYAQALATFPSKKS-IWLRAAYFEKNHGTRESLETLLQKAVAHC 810 (1278)
Q Consensus 751 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~-~~~~la~~~~~~g~~~~A~~~l~~al~~~ 810 (1278)
.+-.....+|+++.|-++|.-.+...+-+.. .|--=+.++...+......+.++......
T Consensus 46 ~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y 106 (199)
T PF04090_consen 46 DLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFY 106 (199)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 3344445556666666666655554433332 34444455555554444434444444333
No 486
>PHA03321 tegument protein VP11/12; Provisional
Probab=25.11 E-value=42 Score=40.55 Aligned_cols=18 Identities=39% Similarity=0.470 Sum_probs=13.2
Q ss_pred CCCCCccccCCCccCCCC
Q psy3224 80 RGATGFTTRSDIGPARDA 97 (1278)
Q Consensus 80 rga~gf~t~~~~g~~~~~ 97 (1278)
|++.+.|-|.|.||.+.+
T Consensus 515 r~~~~~~~r~~~~p~~~a 532 (694)
T PHA03321 515 RNRATETLRPDWGPPAAA 532 (694)
T ss_pred CCcCccccccCCCCCCCC
Confidence 667777777888877654
No 487
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=24.80 E-value=1.1e+03 Score=31.80 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCC
Q psy3224 1015 NLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRK--MLIKARSVLEKGRLRNP 1066 (1278)
Q Consensus 1015 g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g--~~~~A~~~l~kal~~~p 1066 (1278)
++...--+.+..++............+...|.+.+ +++.|+....+..+.++
T Consensus 792 ~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~ 845 (928)
T PF04762_consen 792 SKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDP 845 (928)
T ss_pred cHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcCh
Confidence 34444555555555433334445556666666666 77777777777766543
No 488
>KOG3910|consensus
Probab=24.41 E-value=3.5e+02 Score=32.16 Aligned_cols=41 Identities=29% Similarity=0.355 Sum_probs=21.9
Q ss_pred CCCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHhcCCchhhhhhhhhh
Q psy3224 145 YDKDDEEADMIYEEIDKRMDEKRKDYREKRLREELERYRQERPKIQQQFSDLKR 198 (1278)
Q Consensus 145 ~~~~d~ead~i~~~~d~~~~~~r~~~~~~~~~~~~~~~~~~~~~i~~qf~~lkr 198 (1278)
-|+|++++-++ +|-|+||-+....|+.+.| .|-+-|-.|=|
T Consensus 510 edddl~peqka---------eREkERR~aNNARERlRVR----DINeAfKELGR 550 (632)
T KOG3910|consen 510 EDDDLNPEQKA---------EREKERRMANNARERLRVR----DINEAFKELGR 550 (632)
T ss_pred cccccChhhhh---------hHHHHHHhhhhhhhheehh----hHHHHHHHHHH
Confidence 44555555443 3444444443333444444 37777877776
No 489
>PRK09687 putative lyase; Provisional
Probab=24.31 E-value=1e+03 Score=26.65 Aligned_cols=44 Identities=11% Similarity=-0.050 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Q psy3224 1195 QKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEP 1243 (1278)
Q Consensus 1195 ~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P 1243 (1278)
..|+..+-+.++.. +.....+..+...|+. +|...+.+++..+|
T Consensus 222 ~~av~~Li~~L~~~----~~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 222 KRVLSVLIKELKKG----TVGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred hhHHHHHHHHHcCC----chHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 45555555555421 1333444555555553 46666666665555
No 490
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=24.29 E-value=4.9e+02 Score=22.85 Aligned_cols=15 Identities=20% Similarity=0.454 Sum_probs=6.2
Q ss_pred HHcCCHHHHHHHHHH
Q psy3224 757 ANQGAYECARAIYAQ 771 (1278)
Q Consensus 757 ~~~g~~~~A~~~~~~ 771 (1278)
-..|++++|+.+|.+
T Consensus 17 D~~g~y~eAl~~Y~~ 31 (77)
T cd02683 17 DQEGRFQEALVCYQE 31 (77)
T ss_pred HHhccHHHHHHHHHH
Confidence 333444444444433
No 491
>KOG4279|consensus
Probab=23.98 E-value=5.4e+02 Score=32.45 Aligned_cols=67 Identities=16% Similarity=0.097 Sum_probs=47.4
Q ss_pred cCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q psy3224 839 HGTRESLETLLQKAVAH-CPKSEVLWLMGAKSKWL---------AGDVPAARGILSLAFQANPNSEEIWLAAVKLESE 906 (1278)
Q Consensus 839 ~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~---------~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~ 906 (1278)
.|+.+.|+...-.+++. .|-.++.+...|++|-. .+..+.|...|.++++..|. ...=+.++.++..
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~-~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPL-EYSGINLATLLRA 332 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCch-hhccccHHHHHHH
Confidence 48888899888888875 45667778888887743 34677899999999999985 3333344444443
No 492
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=23.85 E-value=4.6e+02 Score=25.39 Aligned_cols=97 Identities=14% Similarity=0.210 Sum_probs=51.5
Q ss_pred cchHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHhcCCchHHHHHHHHH
Q psy3224 494 INDIKKARLLLKSVRET--NPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARLQPVDTARAVIAQA 571 (1278)
Q Consensus 494 ~g~~~~A~~~l~~~l~~--~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~L~~~~~A~~~l~ka 571 (1278)
..++.+|...|++++.. +|.+.-.. -|-+..-.=.++.|-+.+...+.. -.......-+.+++.|
T Consensus 3 l~~~~kAl~~L~ea~~~~~~~~~~~~~--dg~IqrFE~t~ElaWK~lK~~L~~-----------~G~~~~~spr~~~r~A 69 (124)
T PF08780_consen 3 LENFKKALSRLEEALEKYEDPLSELER--DGVIQRFEFTFELAWKTLKDYLEY-----------EGISECNSPRDVFREA 69 (124)
T ss_dssp HHHHHHHHHHHHHHHHHH-SCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-----------CTSSCCTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-----------hCCcccCCHHHHHHHH
Confidence 45788899999999998 55444333 333331111344455544444433 1111111226677777
Q ss_pred HHhC-CCCHHHHHHHHHchh------hHHHHHHHHHHHH
Q psy3224 572 VRHI-PTSVRIWIKAADLET------ETKAKRRVYRKAL 603 (1278)
Q Consensus 572 L~~~-P~s~~lw~~~~~le~------~~~~A~~ll~rAl 603 (1278)
.+.. -.+...|+.++..-. +.+.|..++.+..
T Consensus 70 ~~~glI~d~e~Wl~m~~~RN~tsHtYde~~a~~i~~~I~ 108 (124)
T PF08780_consen 70 FKAGLIDDGEIWLDMLEDRNLTSHTYDEETAEEIYERIP 108 (124)
T ss_dssp HHTTSSSHHHHHHHHHHHHHHGGGTTSHHHHHHHHHTHH
T ss_pred HHcCCCCCHHHHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 6653 466778888776332 3344555555443
No 493
>COG4016 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.02 E-value=1.1e+02 Score=29.42 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=15.7
Q ss_pred CCCCCCCCCccCCCCCCCCccc
Q psy3224 66 MGVPAPLGYVAGVGRGATGFTT 87 (1278)
Q Consensus 66 ~~~~~p~~yv~g~grga~gf~t 87 (1278)
.+..---|=-||+||||.---|
T Consensus 98 t~adigIGtTAGiGRGaIci~~ 119 (165)
T COG4016 98 TNADIGIGTTAGIGRGAICILT 119 (165)
T ss_pred hCCCcccccccccCCceEEEec
Confidence 4455567788999999876655
No 494
>KOG4814|consensus
Probab=22.42 E-value=1.6e+03 Score=28.16 Aligned_cols=97 Identities=11% Similarity=-0.089 Sum_probs=76.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCcc---chHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy3224 714 KEAIEAEKAGSVHTCQALIRAIIGYGVEQE---DRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFE 790 (1278)
Q Consensus 714 ~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~ 790 (1278)
..|....+..++.++...|...+...+.+. .-..+...++-+|....+.+.|.+++++|-+.+|.++-.........
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 345556666777777777777776554432 23456677888999999999999999999999999998888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhC
Q psy3224 791 KNHGTRESLETLLQKAVAHC 810 (1278)
Q Consensus 791 ~~~g~~~~A~~~l~~al~~~ 810 (1278)
...+..++|+.++.......
T Consensus 439 ~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHhcchHHHHHHHHHHHhhh
Confidence 88999999999988776553
No 495
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=22.38 E-value=3.5e+02 Score=26.12 Aligned_cols=68 Identities=7% Similarity=0.130 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-----hh----------HHHHHHHHHHHhCCHHHHHHHH----HHHHHh
Q psy3224 1181 LLAVSKLFWCENKNQKCREWFNRTVKIDPDL-----GD----------AWAYFYKFEIINGTEETQAEVK----KRCLAA 1241 (1278)
Q Consensus 1181 l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~-----~d----------~~~~l~~~~~~~G~~~~A~~~l----~ka~~~ 1241 (1278)
+..+|...++.+++-.++-.|++|+.+.-+- .+ ...+++.|+..+|+.+=..+++ ++++.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 4567888889999999999999998753221 11 4667899999999999888888 455557
Q ss_pred CCCCcch
Q psy3224 1242 EPKHGEN 1248 (1278)
Q Consensus 1242 ~P~~~~~ 1248 (1278)
-|.-|..
T Consensus 84 iPQCp~~ 90 (140)
T PF10952_consen 84 IPQCPNT 90 (140)
T ss_pred ccCCCCc
Confidence 7876543
No 496
>PF12380 Peptidase_C62: Gill-associated viral 3C-like peptidase; InterPro: IPR024348 This protease is found in polyproteins from the positive-stranded RNA virus of prawns called yellow head virus or gill-associated virus (GAV). The GAV cysteine proteinase (3C-like proteinase) is predicted to be the key enzyme in the processing of the GAV replicase polyprotein precursors, polyprotein 1a and polyprotein 1ab. This protease employs a Cys(2968)-His(2879) catalytic dyad []. It is classified as family C62 in the MEROPS database.
Probab=21.95 E-value=33 Score=34.19 Aligned_cols=61 Identities=34% Similarity=0.528 Sum_probs=40.5
Q ss_pred hhhhhhhHhhhhcccccCCCcccchhcc-----------cccccccchhhHHHHhhhhcccccCCCCCCCCCccCCCCCC
Q psy3224 14 VSKLKTQLAYVVGQTVVDPKGYLTDLQS-----------MIPTYGGDINDIKKARLLLKSKHFMGVPAPLGYVAGVGRGA 82 (1278)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~~yv~g~grga 82 (1278)
+|.+-.||.||.|.....||= -|..|- ---.-+|.|-.||.|-- ||++ ||||.|-|||
T Consensus 212 lstilnqlnyvtgdafttpkl-ptnyqligcetldqyvna~nlvtgqfpqikeald-----dfin-----gyvanlqrg~ 280 (284)
T PF12380_consen 212 LSTILNQLNYVTGDAFTTPKL-PTNYQLIGCETLDQYVNACNLVTGQFPQIKEALD-----DFIN-----GYVANLQRGT 280 (284)
T ss_pred HHHHHHhhceeccccccCCCC-CCceeEechhHHHHHhhhhhhhcccchhHHHHHH-----HHHH-----HHHHhhhccc
Confidence 455667999999999888872 122121 11123566777777654 4754 9999999999
Q ss_pred CCc
Q psy3224 83 TGF 85 (1278)
Q Consensus 83 ~gf 85 (1278)
-.+
T Consensus 281 eay 283 (284)
T PF12380_consen 281 EAY 283 (284)
T ss_pred ccc
Confidence 765
No 497
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=21.86 E-value=1.6e+03 Score=27.94 Aligned_cols=24 Identities=13% Similarity=-0.020 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 672 IWTTAAKLEEAHGNNAMVDKIIDR 695 (1278)
Q Consensus 672 ~~~~la~~~~~~g~~~~A~~il~~ 695 (1278)
+++..+..+..+|..+.+...+..
T Consensus 135 V~LE~al~ll~qG~ie~~~~~lt~ 158 (547)
T PF14929_consen 135 VSLEHALFLLSQGNIEEAAYQLTI 158 (547)
T ss_pred HHHHHHHHHHhCCchHHHHHHHHH
Confidence 455555555555655544444433
No 498
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.83 E-value=2e+02 Score=19.82 Aligned_cols=25 Identities=8% Similarity=0.145 Sum_probs=11.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 673 WTTAAKLEEAHGNNAMVDKIIDRAL 697 (1278)
Q Consensus 673 ~~~la~~~~~~g~~~~A~~il~~al 697 (1278)
|..+...+.+.|+++.|..+|+.+.
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444555555444444443
No 499
>KOG3895|consensus
Probab=21.53 E-value=48 Score=37.13 Aligned_cols=39 Identities=31% Similarity=0.421 Sum_probs=25.4
Q ss_pred CCCcccchhcccccccccchhhHHHHhhhhcccccCCCCCCCCCccC
Q psy3224 31 DPKGYLTDLQSMIPTYGGDINDIKKARLLLKSKHFMGVPAPLGYVAG 77 (1278)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~p~~yv~g 77 (1278)
=|.||.||||-+-|..... ++ ....+++|- +++ ++=++|
T Consensus 17 lpngymtdlqrp~~~~Ssp-as-----p~~e~~~pa-~~~-~~~s~g 55 (488)
T KOG3895|consen 17 LPNGYMTDLQRPDPSASSP-AS-----PAMERRHPA-LPA-PFSSPG 55 (488)
T ss_pred CCccccccccCCCCCCCCC-CC-----cccccCCcc-ccC-CCCCCC
Confidence 3899999999999987765 33 333444664 443 344444
No 500
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=21.27 E-value=3.2e+02 Score=23.90 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHHHh
Q psy3224 529 GKVQAARNLIMKGCEE 544 (1278)
Q Consensus 529 g~~~~A~~~l~~al~~ 544 (1278)
|++++|...|..++..
T Consensus 20 ~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 20 GDYEAAFEFYRAGVDL 35 (75)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 6777888877777753
Done!