Query psy3224
Match_columns 1278
No_of_seqs 1206 out of 4550
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 19:33:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3224.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3224hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 5.6E-35 1.9E-39 347.4 52.1 384 751-1227 4-388 (388)
2 2xpi_A Anaphase-promoting comp 100.0 2.5E-35 8.7E-40 371.4 47.6 498 708-1256 83-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.8E-33 6.2E-38 334.3 52.8 377 647-1083 10-387 (388)
4 2xpi_A Anaphase-promoting comp 100.0 1.4E-33 4.6E-38 355.6 53.1 455 613-1114 91-595 (597)
5 3fp2_A TPR repeat-containing p 100.0 5.3E-31 1.8E-35 327.0 39.8 266 949-1251 217-501 (537)
6 2gw1_A Mitochondrial precursor 100.0 6.2E-31 2.1E-35 324.2 39.3 456 746-1253 6-490 (514)
7 2gw1_A Mitochondrial precursor 100.0 2.2E-29 7.5E-34 310.3 43.7 441 670-1134 6-506 (514)
8 2ooe_A Cleavage stimulation fa 100.0 1.3E-28 4.5E-33 305.5 46.6 257 947-1244 191-495 (530)
9 2ooe_A Cleavage stimulation fa 100.0 1.2E-28 4E-33 305.9 45.8 236 861-1102 231-496 (530)
10 3fp2_A TPR repeat-containing p 100.0 7.3E-29 2.5E-33 307.7 40.7 437 614-1071 33-498 (537)
11 2y4t_A DNAJ homolog subfamily 100.0 1.9E-28 6.4E-33 296.9 42.6 341 654-1042 10-370 (450)
12 2y4t_A DNAJ homolog subfamily 100.0 5.6E-28 1.9E-32 292.7 45.0 317 743-1110 23-370 (450)
13 3ieg_A DNAJ homolog subfamily 100.0 4.3E-27 1.5E-31 274.6 47.4 332 826-1255 3-349 (359)
14 3ieg_A DNAJ homolog subfamily 100.0 1.3E-26 4.4E-31 270.5 45.9 318 746-1081 3-352 (359)
15 4g1t_A Interferon-induced prot 100.0 6.7E-26 2.3E-30 276.5 42.2 399 745-1219 50-471 (472)
16 4e6h_A MRNA 3'-END-processing 99.9 3.7E-24 1.3E-28 266.9 49.1 459 595-1106 51-578 (679)
17 4e6h_A MRNA 3'-END-processing 99.9 5.9E-24 2E-28 265.1 48.2 423 766-1248 52-577 (679)
18 4g1t_A Interferon-induced prot 99.9 4.5E-25 1.5E-29 269.1 36.0 369 827-1253 52-471 (472)
19 3hym_B Cell division cycle pro 99.9 1.2E-24 4.1E-29 250.9 33.7 270 838-1113 34-314 (330)
20 3hym_B Cell division cycle pro 99.9 1.8E-24 6.1E-29 249.4 34.1 287 746-1084 22-320 (330)
21 1fch_A Peroxisomal targeting s 99.9 1.5E-24 5E-29 254.9 26.7 291 793-1098 38-359 (368)
22 2xm6_A Protein corresponding t 99.9 3.9E-22 1.3E-26 244.6 47.8 387 746-1246 39-472 (490)
23 1fch_A Peroxisomal targeting s 99.9 3.2E-24 1.1E-28 251.9 25.6 285 838-1129 37-356 (368)
24 2xm6_A Protein corresponding t 99.9 1.8E-20 6E-25 229.9 54.7 369 667-1114 36-451 (490)
25 4eqf_A PEX5-related protein; a 99.9 2E-23 6.9E-28 245.3 25.0 259 829-1093 68-351 (365)
26 4eqf_A PEX5-related protein; a 99.9 1.1E-23 3.9E-28 247.4 21.8 276 847-1128 48-352 (365)
27 1xi4_A Clathrin heavy chain; a 99.9 1.2E-18 4.1E-23 221.1 66.0 652 495-1240 853-1575(1630)
28 3cv0_A Peroxisome targeting si 99.9 2.1E-22 7.1E-27 231.7 28.0 267 828-1100 23-317 (327)
29 3cv0_A Peroxisome targeting si 99.9 5.4E-22 1.8E-26 228.3 29.0 270 745-1066 20-317 (327)
30 2h6f_A Protein farnesyltransfe 99.9 2.8E-22 9.5E-27 235.3 26.9 255 928-1224 91-365 (382)
31 1xi4_A Clathrin heavy chain; a 99.9 4.6E-18 1.6E-22 215.9 64.7 451 608-1134 951-1447(1630)
32 2h6f_A Protein farnesyltransfe 99.9 3.7E-22 1.3E-26 234.3 23.6 255 852-1113 89-363 (382)
33 3uq3_A Heat shock protein STI1 99.9 2.7E-20 9.2E-25 206.0 29.3 240 859-1112 4-256 (258)
34 3u4t_A TPR repeat-containing p 99.9 9.7E-21 3.3E-25 212.0 24.4 257 897-1226 6-269 (272)
35 3u4t_A TPR repeat-containing p 99.9 2.3E-20 8E-25 208.9 25.3 251 860-1114 3-266 (272)
36 2ond_A Cleavage stimulation fa 99.9 4.2E-20 1.4E-24 211.7 27.2 238 826-1069 8-275 (308)
37 3mkr_A Coatomer subunit epsilo 99.9 1.5E-19 5.2E-24 204.9 29.7 260 835-1107 8-273 (291)
38 2uy1_A Cleavage stimulation fa 99.9 1E-18 3.5E-23 212.4 38.6 383 491-962 4-412 (493)
39 3uq3_A Heat shock protein STI1 99.8 2.3E-19 8E-24 198.4 29.3 238 826-1078 5-256 (258)
40 2pl2_A Hypothetical conserved 99.8 8.9E-20 3E-24 197.4 24.7 198 931-1129 2-211 (217)
41 3e4b_A ALGK; tetratricopeptide 99.8 3.3E-20 1.1E-24 224.4 23.2 378 750-1244 7-424 (452)
42 3mkr_A Coatomer subunit epsilo 99.8 3.5E-19 1.2E-23 201.9 30.2 258 754-1071 7-271 (291)
43 3sf4_A G-protein-signaling mod 99.8 4.2E-20 1.4E-24 219.5 23.4 304 858-1230 7-365 (406)
44 2pl2_A Hypothetical conserved 99.8 1E-19 3.5E-24 196.9 24.2 210 857-1095 2-211 (217)
45 2uy1_A Cleavage stimulation fa 99.8 1.1E-18 3.7E-23 212.2 35.0 218 843-1099 196-414 (493)
46 2ond_A Cleavage stimulation fa 99.8 4.8E-19 1.7E-23 202.9 29.1 240 858-1103 6-275 (308)
47 3sf4_A G-protein-signaling mod 99.8 3.4E-19 1.2E-23 211.6 26.0 300 746-1085 9-363 (406)
48 4a1s_A PINS, partner of inscut 99.8 4.7E-19 1.6E-23 211.4 23.8 276 828-1103 50-377 (411)
49 3ro2_A PINS homolog, G-protein 99.8 5.6E-19 1.9E-23 203.1 23.6 283 861-1212 6-337 (338)
50 4a1s_A PINS, partner of inscut 99.8 9.1E-19 3.1E-23 208.9 24.4 285 745-1069 47-377 (411)
51 2q7f_A YRRB protein; TPR, prot 99.8 1.9E-18 6.4E-23 189.5 23.7 211 861-1077 24-235 (243)
52 3ro2_A PINS homolog, G-protein 99.8 1.5E-18 5.2E-23 199.4 24.1 275 828-1102 7-336 (338)
53 2q7f_A YRRB protein; TPR, prot 99.8 3.5E-18 1.2E-22 187.3 25.2 217 893-1115 22-239 (243)
54 3e4b_A ALGK; tetratricopeptide 99.8 4.6E-18 1.6E-22 205.5 28.2 371 716-1129 10-418 (452)
55 1xnf_A Lipoprotein NLPI; TPR, 99.8 4.4E-18 1.5E-22 190.4 25.4 247 946-1235 17-269 (275)
56 1xnf_A Lipoprotein NLPI; TPR, 99.8 1.4E-18 4.8E-23 194.4 20.5 245 838-1092 17-269 (275)
57 2vq2_A PILW, putative fimbrial 99.8 3.2E-17 1.1E-21 177.0 30.5 211 855-1071 3-218 (225)
58 2ho1_A Type 4 fimbrial biogene 99.8 1.7E-17 5.8E-22 183.2 28.6 211 855-1071 31-245 (252)
59 2vq2_A PILW, putative fimbrial 99.8 4.3E-17 1.5E-21 175.9 30.3 214 889-1108 3-221 (225)
60 2ho1_A Type 4 fimbrial biogene 99.8 2.4E-17 8.2E-22 182.0 28.3 214 889-1108 31-248 (252)
61 1ouv_A Conserved hypothetical 99.8 9.5E-17 3.2E-21 180.0 33.2 236 856-1108 2-261 (273)
62 3vtx_A MAMA; tetratricopeptide 99.8 2.8E-17 9.7E-22 172.2 24.4 172 932-1103 3-175 (184)
63 4abn_A Tetratricopeptide repea 99.8 1E-17 3.5E-22 203.8 23.3 214 876-1095 84-318 (474)
64 3vtx_A MAMA; tetratricopeptide 99.8 5E-17 1.7E-21 170.3 24.6 171 894-1070 5-176 (184)
65 1ouv_A Conserved hypothetical 99.8 3.3E-16 1.1E-20 175.5 32.7 231 826-1073 6-260 (273)
66 4abn_A Tetratricopeptide repea 99.7 3.7E-17 1.3E-21 198.9 23.3 213 842-1061 84-318 (474)
67 4i17_A Hypothetical protein; T 99.7 2.3E-16 7.7E-21 171.7 24.1 209 998-1254 4-222 (228)
68 3ulq_A Response regulator aspa 99.7 3.5E-16 1.2E-20 184.9 27.6 231 937-1209 106-370 (383)
69 4i17_A Hypothetical protein; T 99.7 5.9E-16 2E-20 168.3 24.7 209 891-1112 4-223 (228)
70 3ulq_A Response regulator aspa 99.7 4.3E-16 1.5E-20 184.1 25.3 238 862-1100 105-370 (383)
71 3nf1_A KLC 1, kinesin light ch 99.7 1.2E-16 4.1E-21 181.9 17.3 246 856-1101 23-310 (311)
72 4gyw_A UDP-N-acetylglucosamine 99.7 3E-16 1E-20 198.2 21.9 175 928-1102 3-178 (723)
73 4gyw_A UDP-N-acetylglucosamine 99.7 5.7E-16 2E-20 195.7 22.8 174 996-1244 4-177 (723)
74 3nf1_A KLC 1, kinesin light ch 99.7 3.1E-16 1.1E-20 178.5 17.0 173 929-1101 22-227 (311)
75 3dra_A Protein farnesyltransfe 99.7 5.3E-15 1.8E-19 166.6 26.3 233 984-1257 50-304 (306)
76 1b89_A Protein (clathrin heavy 99.7 6.8E-17 2.3E-21 187.0 10.2 306 758-1114 15-339 (449)
77 3dra_A Protein farnesyltransfe 99.7 1.8E-14 6.2E-19 162.2 28.4 232 843-1113 50-303 (306)
78 1hz4_A MALT regulatory protein 99.7 2.4E-14 8.3E-19 168.2 30.8 312 862-1250 16-357 (373)
79 1b89_A Protein (clathrin heavy 99.7 1.6E-16 5.6E-21 183.8 11.6 312 837-1223 14-339 (449)
80 3q15_A PSP28, response regulat 99.6 2.4E-14 8.1E-19 168.9 29.3 231 936-1208 103-366 (378)
81 3q15_A PSP28, response regulat 99.6 2.3E-14 8E-19 168.9 27.3 237 862-1099 103-366 (378)
82 3qky_A Outer membrane assembly 99.6 1.1E-14 3.9E-19 161.9 22.7 179 929-1107 10-233 (261)
83 1qqe_A Vesicular transport pro 99.6 2.7E-15 9.3E-20 170.1 17.7 244 845-1107 4-278 (292)
84 3qky_A Outer membrane assembly 99.6 9.8E-15 3.4E-19 162.4 21.9 211 853-1086 8-249 (261)
85 1qqe_A Vesicular transport pro 99.6 2.8E-15 9.6E-20 170.0 16.7 227 949-1256 32-284 (292)
86 1hz4_A MALT regulatory protein 99.6 1E-13 3.5E-18 162.8 30.5 273 828-1100 16-324 (373)
87 3as5_A MAMA; tetratricopeptide 99.6 2.7E-14 9.1E-19 148.4 21.1 170 934-1103 8-178 (186)
88 4ga2_A E3 SUMO-protein ligase 99.6 2E-15 6.8E-20 152.6 10.5 145 973-1117 3-148 (150)
89 2pzi_A Probable serine/threoni 99.6 1.6E-14 5.6E-19 183.5 20.1 186 855-1050 389-583 (681)
90 3urz_A Uncharacterized protein 99.6 6.4E-14 2.2E-18 150.1 21.4 176 968-1220 5-198 (208)
91 2pzi_A Probable serine/threoni 99.6 1.2E-14 4.2E-19 184.6 18.2 185 929-1117 389-582 (681)
92 3as5_A MAMA; tetratricopeptide 99.6 1E-13 3.6E-18 143.9 21.9 168 896-1069 10-178 (186)
93 4ga2_A E3 SUMO-protein ligase 99.6 5.6E-15 1.9E-19 149.3 11.3 145 940-1084 3-149 (150)
94 2yhc_A BAMD, UPF0169 lipoprote 99.6 1.2E-13 4E-18 150.0 21.3 210 966-1249 3-221 (225)
95 3urz_A Uncharacterized protein 99.5 7.3E-14 2.5E-18 149.6 18.1 168 827-1000 5-190 (208)
96 3edt_B KLC 2, kinesin light ch 99.5 4.1E-14 1.4E-18 158.1 16.6 228 838-1098 13-281 (283)
97 3dss_A Geranylgeranyl transfer 99.5 2.8E-12 9.7E-17 144.9 30.7 166 839-1010 42-236 (331)
98 3dss_A Geranylgeranyl transfer 99.5 3.3E-12 1.1E-16 144.4 30.8 234 871-1110 40-316 (331)
99 2yhc_A BAMD, UPF0169 lipoprote 99.5 3.1E-13 1.1E-17 146.7 21.5 188 893-1102 3-217 (225)
100 3edt_B KLC 2, kinesin light ch 99.5 6.6E-14 2.3E-18 156.4 15.7 140 824-963 41-198 (283)
101 3q7a_A Farnesyltransferase alp 99.5 1.5E-12 5E-17 147.8 23.4 271 936-1221 56-346 (349)
102 4gco_A Protein STI-1; structur 99.5 5.4E-13 1.8E-17 130.2 16.3 120 993-1112 5-124 (126)
103 3q7a_A Farnesyltransferase alp 99.5 4.9E-12 1.7E-16 143.5 26.5 245 835-1110 63-344 (349)
104 2r5s_A Uncharacterized protein 99.4 4.3E-13 1.5E-17 139.4 13.2 164 933-1097 5-172 (176)
105 4gco_A Protein STI-1; structur 99.4 1.5E-12 5E-17 127.1 15.6 116 963-1078 8-124 (126)
106 3qou_A Protein YBBN; thioredox 99.4 2.3E-12 7.9E-17 145.4 19.0 166 891-1062 114-282 (287)
107 3qou_A Protein YBBN; thioredox 99.4 3E-12 1E-16 144.5 19.7 168 856-1029 113-283 (287)
108 2ifu_A Gamma-SNAP; membrane fu 99.4 2.8E-12 9.7E-17 146.3 19.6 226 839-1090 4-253 (307)
109 3gyz_A Chaperone protein IPGC; 99.4 3.2E-13 1.1E-17 136.0 10.3 117 987-1103 22-138 (151)
110 2r5s_A Uncharacterized protein 99.4 5.5E-13 1.9E-17 138.5 12.2 167 858-1063 4-172 (176)
111 4f3v_A ESX-1 secretion system 99.4 4E-13 1.4E-17 147.5 11.3 214 1013-1267 18-262 (282)
112 2ifu_A Gamma-SNAP; membrane fu 99.4 2.7E-12 9.2E-17 146.5 18.6 227 907-1233 4-253 (307)
113 2vsy_A XCC0866; transferase, g 99.4 3E-12 1E-16 159.6 20.2 160 948-1107 3-166 (568)
114 2fo7_A Synthetic consensus TPR 99.4 2E-11 6.9E-16 118.9 19.8 133 969-1101 3-135 (136)
115 2vsy_A XCC0866; transferase, g 99.4 6.8E-12 2.3E-16 156.4 19.6 164 873-1042 2-169 (568)
116 2c2l_A CHIP, carboxy terminus 99.4 8.2E-13 2.8E-17 148.6 9.9 194 998-1242 1-200 (281)
117 3gyz_A Chaperone protein IPGC; 99.4 2.7E-12 9.1E-17 129.2 11.6 115 955-1069 23-138 (151)
118 4f3v_A ESX-1 secretion system 99.3 3.5E-12 1.2E-16 140.0 13.2 189 838-1033 18-240 (282)
119 3rjv_A Putative SEL1 repeat pr 99.3 8E-11 2.7E-15 126.2 22.8 153 845-1011 5-172 (212)
120 3rjv_A Putative SEL1 repeat pr 99.3 4.6E-11 1.6E-15 128.1 20.5 175 878-1065 4-198 (212)
121 2vgx_A Chaperone SYCD; alterna 99.3 4.6E-12 1.6E-16 127.4 11.8 118 988-1105 8-125 (148)
122 2fo7_A Synthetic consensus TPR 99.3 8.7E-11 3E-15 114.3 19.9 134 935-1068 2-136 (136)
123 1p5q_A FKBP52, FK506-binding p 99.3 7.5E-13 2.6E-17 153.0 3.0 132 968-1099 148-295 (336)
124 2vgx_A Chaperone SYCD; alterna 99.3 9.1E-12 3.1E-16 125.2 10.6 117 955-1071 8-125 (148)
125 2xcb_A PCRH, regulatory protei 99.3 1.3E-11 4.4E-16 123.1 11.5 119 988-1106 5-123 (142)
126 1p5q_A FKBP52, FK506-binding p 99.3 1E-11 3.5E-16 143.5 11.3 152 906-1063 125-293 (336)
127 2c2l_A CHIP, carboxy terminus 99.3 1E-11 3.5E-16 139.6 10.7 195 931-1130 1-197 (281)
128 1a17_A Serine/threonine protei 99.3 2E-10 6.9E-15 116.9 19.2 132 967-1098 13-146 (166)
129 3mv2_B Coatomer subunit epsilo 99.2 4.2E-10 1.4E-14 125.1 22.9 248 835-1107 22-291 (310)
130 2e2e_A Formate-dependent nitri 99.2 4.2E-11 1.5E-15 124.1 13.9 127 979-1105 22-151 (177)
131 2xcb_A PCRH, regulatory protei 99.2 2.6E-11 9.1E-16 120.8 11.5 120 955-1074 5-125 (142)
132 3mv2_B Coatomer subunit epsilo 99.2 7E-10 2.4E-14 123.3 23.6 182 879-1071 85-289 (310)
133 3upv_A Heat shock protein STI1 99.2 2.1E-10 7.3E-15 111.3 17.0 112 968-1079 5-122 (126)
134 1hh8_A P67PHOX, NCF-2, neutrop 99.2 2.5E-10 8.7E-15 121.9 19.2 131 936-1068 8-154 (213)
135 3upv_A Heat shock protein STI1 99.2 1.7E-10 5.6E-15 112.1 16.0 115 998-1112 1-121 (126)
136 1dce_A Protein (RAB geranylger 99.2 2.4E-10 8.1E-15 140.9 21.0 173 949-1121 44-244 (567)
137 2vyi_A SGTA protein; chaperone 99.2 4.5E-10 1.5E-14 108.7 17.1 117 968-1084 13-129 (131)
138 2e2e_A Formate-dependent nitri 99.2 2.6E-10 8.8E-15 118.1 16.1 126 946-1071 22-151 (177)
139 1hh8_A P67PHOX, NCF-2, neutrop 99.2 3.6E-10 1.2E-14 120.6 17.6 132 968-1102 7-154 (213)
140 2fbn_A 70 kDa peptidylprolyl i 99.2 4.4E-11 1.5E-15 126.6 10.1 144 946-1089 16-176 (198)
141 2lni_A Stress-induced-phosphop 99.2 3.6E-10 1.2E-14 110.1 15.4 117 967-1083 16-132 (133)
142 3sz7_A HSC70 cochaperone (SGT) 99.2 4E-10 1.4E-14 115.2 15.8 107 968-1074 12-118 (164)
143 3sz7_A HSC70 cochaperone (SGT) 99.2 3.2E-10 1.1E-14 115.8 15.0 115 997-1111 7-121 (164)
144 1a17_A Serine/threonine protei 99.2 1E-09 3.5E-14 111.5 18.8 131 934-1064 13-146 (166)
145 2vyi_A SGTA protein; chaperone 99.1 3.3E-10 1.1E-14 109.7 14.0 124 996-1119 7-130 (131)
146 2qfc_A PLCR protein; TPR, HTH, 99.1 2E-09 6.7E-14 121.7 22.1 174 998-1242 72-267 (293)
147 1na0_A Designed protein CTPR3; 99.1 1.8E-09 6.3E-14 103.3 18.2 115 968-1082 10-124 (125)
148 2qfc_A PLCR protein; TPR, HTH, 99.1 1.8E-09 6.3E-14 121.9 20.8 165 935-1099 76-267 (293)
149 2lni_A Stress-induced-phosphop 99.1 3.8E-10 1.3E-14 109.9 13.2 118 997-1114 12-129 (133)
150 1elw_A TPR1-domain of HOP; HOP 99.1 1.5E-09 5.2E-14 102.8 16.9 111 968-1078 5-115 (118)
151 1hxi_A PEX5, peroxisome target 99.1 3.9E-10 1.3E-14 108.9 12.7 99 970-1068 20-118 (121)
152 1dce_A Protein (RAB geranylger 99.1 1.5E-09 5.3E-14 133.6 20.2 181 877-1087 46-244 (567)
153 1hxi_A PEX5, peroxisome target 99.1 5.7E-10 2E-14 107.7 12.7 103 1002-1104 18-120 (121)
154 2fbn_A 70 kDa peptidylprolyl i 99.1 1.1E-10 3.6E-15 123.6 7.9 150 974-1123 11-176 (198)
155 1na0_A Designed protein CTPR3; 99.1 1.8E-09 6.2E-14 103.4 16.0 117 997-1113 4-121 (125)
156 1elw_A TPR1-domain of HOP; HOP 99.1 2E-09 6.9E-14 102.0 16.1 113 1000-1112 3-115 (118)
157 3q49_B STIP1 homology and U bo 99.1 1.2E-09 4.2E-14 107.2 15.0 105 997-1101 5-109 (137)
158 3q49_B STIP1 homology and U bo 99.1 1.5E-09 5.1E-14 106.7 15.2 115 966-1080 8-127 (137)
159 4gcn_A Protein STI-1; structur 99.1 1.8E-09 6E-14 105.2 15.5 98 969-1066 10-114 (127)
160 3rkv_A Putative peptidylprolyl 99.0 1.3E-09 4.6E-14 110.9 13.9 113 968-1080 12-143 (162)
161 2dba_A Smooth muscle cell asso 99.0 3E-09 1E-13 105.7 16.3 110 968-1077 29-141 (148)
162 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 1.8E-10 6.3E-15 138.9 8.7 167 906-1096 246-413 (457)
163 4gcn_A Protein STI-1; structur 99.0 1.5E-09 5.2E-14 105.6 13.1 104 999-1102 6-116 (127)
164 2xev_A YBGF; tetratricopeptide 99.0 5.5E-09 1.9E-13 101.3 17.0 109 970-1078 5-119 (129)
165 1kt0_A FKBP51, 51 kDa FK506-bi 99.0 1.2E-10 4.2E-15 140.4 5.7 149 981-1129 248-412 (457)
166 2dba_A Smooth muscle cell asso 99.0 4.8E-09 1.6E-13 104.2 16.4 120 928-1047 22-145 (148)
167 3u3w_A Transcriptional activat 99.0 4.1E-09 1.4E-13 119.1 17.5 159 941-1099 82-267 (293)
168 3u3w_A Transcriptional activat 99.0 1E-08 3.5E-13 115.7 20.2 126 940-1065 121-267 (293)
169 3gw4_A Uncharacterized protein 99.0 2.8E-09 9.7E-14 112.4 14.6 167 978-1213 3-182 (203)
170 2kck_A TPR repeat; tetratricop 99.0 1.6E-09 5.3E-14 101.8 10.9 106 997-1102 2-110 (112)
171 2hr2_A Hypothetical protein; a 99.0 2.2E-09 7.4E-14 106.8 12.1 103 968-1070 12-137 (159)
172 2hr2_A Hypothetical protein; a 99.0 2.6E-09 8.9E-14 106.2 12.5 105 1001-1105 11-138 (159)
173 2xev_A YBGF; tetratricopeptide 99.0 6.8E-09 2.3E-13 100.6 15.1 108 1002-1109 3-116 (129)
174 2if4_A ATFKBP42; FKBP-like, al 99.0 7.2E-10 2.5E-14 128.0 9.4 156 932-1103 177-333 (338)
175 3rkv_A Putative peptidylprolyl 99.0 5.2E-09 1.8E-13 106.5 14.3 112 1000-1111 10-140 (162)
176 3gw4_A Uncharacterized protein 99.0 7.7E-09 2.6E-13 109.0 15.9 166 1012-1249 3-184 (203)
177 1elr_A TPR2A-domain of HOP; HO 98.9 6.8E-09 2.3E-13 100.3 13.7 111 968-1079 5-122 (131)
178 4b4t_Q 26S proteasome regulato 98.9 3.3E-08 1.1E-12 118.1 22.7 201 830-1030 8-245 (434)
179 1zu2_A Mitochondrial import re 98.9 2.4E-09 8.1E-14 106.2 10.2 91 979-1069 14-125 (158)
180 2if4_A ATFKBP42; FKBP-like, al 98.9 8.7E-10 3E-14 127.3 7.3 166 883-1070 168-334 (338)
181 4b4t_Q 26S proteasome regulato 98.9 1E-08 3.4E-13 122.6 16.6 204 861-1064 5-245 (434)
182 1elr_A TPR2A-domain of HOP; HO 98.9 1.3E-08 4.6E-13 98.2 14.3 113 999-1112 2-121 (131)
183 3k9i_A BH0479 protein; putativ 98.9 2.3E-09 7.7E-14 102.6 8.1 93 980-1072 3-98 (117)
184 1ihg_A Cyclophilin 40; ppiase 98.9 1.1E-08 3.6E-13 119.5 15.3 140 934-1090 223-362 (370)
185 1wao_1 Serine/threonine protei 98.9 5.7E-10 2E-14 135.1 4.4 132 970-1101 9-153 (477)
186 2kck_A TPR repeat; tetratricop 98.9 9.6E-09 3.3E-13 96.2 11.1 101 968-1068 7-110 (112)
187 1wao_1 Serine/threonine protei 98.8 1.3E-09 4.5E-14 132.0 3.5 133 936-1068 8-154 (477)
188 3ro3_A PINS homolog, G-protein 98.8 3.5E-08 1.2E-12 99.0 13.6 130 970-1099 12-159 (164)
189 1zu2_A Mitochondrial import re 98.8 1.6E-08 5.3E-13 100.3 9.9 96 1012-1107 13-129 (158)
190 3k9i_A BH0479 protein; putativ 98.8 6.1E-09 2.1E-13 99.6 6.9 95 1013-1107 2-99 (117)
191 3ro3_A PINS homolog, G-protein 98.8 5E-08 1.7E-12 97.9 13.7 133 935-1067 10-161 (164)
192 1ihg_A Cyclophilin 40; ppiase 98.8 2.3E-08 8E-13 116.6 12.6 138 967-1122 223-360 (370)
193 2kat_A Uncharacterized protein 98.6 2.2E-07 7.7E-12 88.1 12.5 83 985-1067 3-85 (115)
194 1na3_A Designed protein CTPR2; 98.6 4.8E-07 1.6E-11 81.2 12.7 83 1000-1082 8-90 (91)
195 2l6j_A TPR repeat-containing p 98.5 4.8E-08 1.7E-12 91.6 5.1 90 1001-1090 4-99 (111)
196 2l6j_A TPR repeat-containing p 98.5 5.6E-08 1.9E-12 91.2 4.4 94 967-1060 4-103 (111)
197 3ma5_A Tetratricopeptide repea 98.5 1.8E-07 6.2E-12 86.5 7.7 77 1173-1249 2-78 (100)
198 1na3_A Designed protein CTPR2; 98.5 1.5E-06 5E-11 78.0 12.8 83 967-1049 9-91 (91)
199 3u64_A Protein TP_0956; tetrat 98.5 3.2E-06 1.1E-10 91.3 17.4 106 996-1101 147-272 (301)
200 2kat_A Uncharacterized protein 98.4 1.2E-06 4.1E-11 83.0 11.9 85 1019-1103 3-87 (115)
201 4h7y_A Dual specificity protei 98.4 3.5E-06 1.2E-10 80.5 14.7 119 775-898 8-132 (161)
202 3ma5_A Tetratricopeptide repea 98.4 1.2E-06 4.3E-11 80.7 10.6 72 996-1067 2-73 (100)
203 2kc7_A BFR218_protein; tetratr 98.3 6.8E-07 2.3E-11 82.0 7.5 66 973-1038 6-72 (99)
204 2kc7_A BFR218_protein; tetratr 98.3 7.6E-07 2.6E-11 81.6 7.6 90 1005-1102 4-94 (99)
205 3u64_A Protein TP_0956; tetrat 98.3 2.1E-05 7.3E-10 85.0 19.8 86 983-1068 179-273 (301)
206 3ly7_A Transcriptional activat 98.3 2.6E-05 8.9E-10 88.1 20.6 151 850-1034 184-343 (372)
207 4h7y_A Dual specificity protei 98.3 6.6E-06 2.3E-10 78.6 13.1 111 928-1039 7-132 (161)
208 3n71_A Histone lysine methyltr 98.3 6.9E-06 2.4E-10 98.6 15.4 137 1044-1252 318-475 (490)
209 1klx_A Cysteine rich protein B 98.2 1.7E-05 5.7E-10 78.0 15.2 109 949-1064 10-126 (138)
210 3ly7_A Transcriptional activat 98.2 2.7E-05 9.3E-10 87.9 18.1 122 982-1104 214-345 (372)
211 1klx_A Cysteine rich protein B 98.2 2.3E-05 8E-10 77.0 15.4 111 981-1099 9-127 (138)
212 4g26_A Pentatricopeptide repea 98.1 0.00032 1.1E-08 84.8 26.3 178 862-1046 28-221 (501)
213 4g26_A Pentatricopeptide repea 98.1 0.00019 6.4E-09 86.8 23.9 161 897-1063 29-203 (501)
214 3n71_A Histone lysine methyltr 98.0 1.4E-05 4.7E-10 96.0 12.0 129 978-1106 320-472 (490)
215 3bee_A Putative YFRE protein; 98.0 2.2E-05 7.6E-10 71.0 10.0 71 1174-1244 2-75 (93)
216 3bee_A Putative YFRE protein; 97.9 5.7E-05 1.9E-09 68.3 10.0 71 997-1067 2-75 (93)
217 1pc2_A Mitochondria fission pr 97.8 0.00016 5.4E-09 70.8 12.5 88 984-1071 15-107 (152)
218 2v5f_A Prolyl 4-hydroxylase su 97.7 9.9E-05 3.4E-09 68.4 9.7 76 1177-1252 4-86 (104)
219 1pc2_A Mitochondria fission pr 97.7 0.00023 8E-09 69.6 11.4 92 1016-1107 13-109 (152)
220 2v5f_A Prolyl 4-hydroxylase su 97.5 0.00074 2.5E-08 62.4 12.0 75 968-1042 6-87 (104)
221 3qww_A SET and MYND domain-con 97.3 0.0012 4.2E-08 77.7 12.8 97 1048-1216 311-425 (433)
222 3qwp_A SET and MYND domain-con 97.2 0.0036 1.2E-07 73.7 16.5 99 1045-1215 297-413 (429)
223 3qww_A SET and MYND domain-con 97.1 0.0027 9.2E-08 74.8 13.1 84 946-1029 310-410 (433)
224 3qwp_A SET and MYND domain-con 97.0 0.0061 2.1E-07 71.8 15.0 84 946-1029 299-399 (429)
225 1nzn_A CGI-135 protein, fissio 96.8 0.0091 3.1E-07 56.2 11.5 87 985-1071 19-110 (126)
226 1nzn_A CGI-135 protein, fissio 96.6 0.013 4.5E-07 55.1 10.9 93 1015-1107 15-112 (126)
227 1qsa_A Protein (soluble lytic 96.6 2.3 7.8E-05 51.9 37.3 277 732-1029 58-347 (618)
228 3txn_A 26S proteasome regulato 96.4 0.48 1.7E-05 54.3 24.5 57 865-921 104-166 (394)
229 3ffl_A Anaphase-promoting comp 96.3 0.017 5.7E-07 56.8 10.3 130 830-977 24-165 (167)
230 3txn_A 26S proteasome regulato 96.1 0.93 3.2E-05 51.9 24.5 99 899-997 104-211 (394)
231 3ffl_A Anaphase-promoting comp 95.4 0.063 2.2E-06 52.8 9.7 133 748-905 22-166 (167)
232 1qsa_A Protein (soluble lytic 95.2 8.4 0.00029 46.9 38.8 119 978-1097 225-347 (618)
233 3mkq_A Coatomer beta'-subunit; 94.9 1.5 5.3E-05 55.8 24.2 75 864-960 633-707 (814)
234 1y8m_A FIS1; mitochondria, unk 94.9 0.43 1.5E-05 45.6 13.4 75 965-1039 37-115 (144)
235 3lpz_A GET4 (YOR164C homolog); 94.9 3.6 0.00012 45.5 23.0 27 858-884 134-160 (336)
236 3mkq_A Coatomer beta'-subunit; 94.7 0.96 3.3E-05 57.8 21.2 99 755-886 608-707 (814)
237 4gns_B Protein CSD3, chitin bi 94.6 0.23 7.8E-06 61.8 14.2 65 1175-1240 610-683 (754)
238 3o48_A Mitochondria fission 1 94.5 0.33 1.1E-05 45.7 11.4 75 965-1039 38-116 (134)
239 1y8m_A FIS1; mitochondria, unk 94.2 1 3.5E-05 43.0 14.4 73 999-1071 37-113 (144)
240 3o48_A Mitochondria fission 1 94.2 0.34 1.1E-05 45.7 10.7 72 1000-1071 39-114 (134)
241 1zbp_A Hypothetical protein VP 93.9 0.94 3.2E-05 48.2 14.8 120 754-892 5-132 (273)
242 4gns_B Protein CSD3, chitin bi 93.1 0.58 2E-05 58.2 13.7 58 862-919 339-396 (754)
243 4b4t_P 26S proteasome regulato 92.8 12 0.0004 43.8 23.9 96 1002-1097 138-246 (445)
244 4ady_A RPN2, 26S proteasome re 92.6 29 0.00099 44.0 36.7 46 748-795 232-277 (963)
245 2wpv_A GET4, UPF0363 protein Y 92.1 15 0.00052 40.3 22.0 27 858-884 132-158 (312)
246 3spa_A Mtrpol, DNA-directed RN 92.1 1.1 3.7E-05 56.9 14.0 101 860-965 127-232 (1134)
247 3mkq_B Coatomer subunit alpha; 92.0 2.3 8E-05 42.4 13.8 99 978-1094 16-114 (177)
248 3kae_A CDC27, possible protein 91.8 10 0.00035 36.9 21.1 106 856-966 29-146 (242)
249 3spa_A Mtrpol, DNA-directed RN 91.5 1.4 4.9E-05 55.8 14.3 102 894-997 127-231 (1134)
250 3mkq_B Coatomer subunit alpha; 91.5 3.1 0.0001 41.6 14.0 99 757-885 16-114 (177)
251 4b4t_P 26S proteasome regulato 91.0 14 0.00048 43.1 21.7 98 967-1064 137-247 (445)
252 1zbp_A Hypothetical protein VP 90.5 3.1 0.00011 44.3 13.8 59 837-895 8-66 (273)
253 2ff4_A Probable regulatory pro 90.4 4.7 0.00016 46.3 16.7 107 681-808 126-233 (388)
254 3kae_A CDC27, possible protein 88.3 20 0.00068 34.9 19.8 99 1002-1105 34-150 (242)
255 3esl_A Checkpoint serine/threo 87.8 4.2 0.00014 41.3 11.8 63 637-699 77-144 (202)
256 2ff4_A Probable regulatory pro 87.6 5.4 0.00018 45.8 14.5 61 1003-1063 173-233 (388)
257 4b4t_S RPN3, 26S proteasome re 86.6 12 0.00042 43.9 16.5 124 835-966 145-302 (523)
258 4b4t_S RPN3, 26S proteasome re 86.3 3.7 0.00013 48.2 11.9 103 930-1034 177-303 (523)
259 4fhn_B Nucleoporin NUP120; pro 85.6 4.6 0.00016 53.7 14.1 52 972-1027 817-868 (1139)
260 4fhn_B Nucleoporin NUP120; pro 85.5 8.1 0.00028 51.3 16.5 136 866-1025 818-962 (1139)
261 4b4t_R RPN7, 26S proteasome re 82.4 5.4 0.00018 46.5 11.4 99 861-963 132-237 (429)
262 3esl_A Checkpoint serine/threo 82.2 39 0.0013 34.2 15.8 123 653-777 9-146 (202)
263 4ady_A RPN2, 26S proteasome re 82.1 1.2E+02 0.0041 38.5 38.0 56 1180-1239 598-656 (963)
264 1ya0_A SMG-7 transcript varian 81.9 5 0.00017 47.4 10.8 79 969-1047 154-232 (497)
265 1ya0_A SMG-7 transcript varian 80.6 6.6 0.00023 46.4 11.2 80 1002-1081 153-232 (497)
266 4b4t_R RPN7, 26S proteasome re 79.9 6.3 0.00022 45.9 10.8 96 936-1031 133-238 (429)
267 3lvg_A Clathrin heavy chain 1; 75.0 0.00018 6.1E-09 82.0 -28.2 237 858-1129 52-288 (624)
268 4a1g_A Mitotic checkpoint seri 74.2 14 0.00049 35.6 9.5 59 639-699 70-130 (152)
269 4aez_C MAD3, mitotic spindle c 71.8 29 0.001 35.7 11.6 72 626-699 97-179 (223)
270 4aez_C MAD3, mitotic spindle c 68.8 76 0.0026 32.7 13.9 101 670-777 72-181 (223)
271 2wvi_A Mitotic checkpoint seri 61.5 64 0.0022 31.6 11.2 59 968-1032 67-127 (164)
272 2wvi_A Mitotic checkpoint seri 58.5 1.4E+02 0.0048 29.1 13.6 82 690-778 43-128 (164)
273 3lpz_A GET4 (YOR164C homolog); 55.8 2.4E+02 0.0082 31.0 29.7 24 746-769 136-159 (336)
274 1wy6_A Hypothetical protein ST 47.3 1.9E+02 0.0065 27.3 15.4 55 1187-1241 100-154 (172)
275 4g3b_A Alpha4F3D; alpha helix, 44.1 33 0.0011 21.0 3.5 19 152-170 3-21 (26)
276 4a1g_A Mitotic checkpoint seri 44.0 2.3E+02 0.0077 27.3 17.0 85 689-780 47-135 (152)
277 4gq2_M Nucleoporin NUP120; bet 36.8 1.4E+02 0.0049 38.3 12.2 49 975-1027 818-866 (950)
278 3twe_A Alpha4H; unknown functi 32.6 63 0.0021 20.0 3.5 18 151-168 2-19 (27)
279 3ax2_A Mitochondrial import re 30.3 1.1E+02 0.0036 25.5 5.9 36 1181-1216 20-55 (73)
280 4gq2_M Nucleoporin NUP120; bet 29.1 2.8E+02 0.0095 35.6 13.0 32 929-960 835-866 (950)
281 1wgx_A KIAA1903 protein; MYB D 27.2 98 0.0034 25.7 5.2 41 1232-1274 16-57 (73)
282 3t5v_B Nuclear mRNA export pro 27.2 2.6E+02 0.009 32.2 11.0 63 972-1034 181-254 (455)
283 2wpv_A GET4, UPF0363 protein Y 25.8 6.6E+02 0.023 27.2 27.6 27 892-918 132-158 (312)
284 1g1e_B SIN3A; four-helix bundl 25.7 3E+02 0.01 23.7 8.4 63 1051-1113 10-86 (89)
285 2v6y_A AAA family ATPase, P60 24.4 2.1E+02 0.0073 24.2 7.2 32 497-543 8-39 (83)
286 2w2u_A Hypothetical P60 katani 24.1 2.1E+02 0.0071 24.3 7.0 33 496-543 15-47 (83)
287 3ax2_A Mitochondrial import re 24.0 1.5E+02 0.0052 24.5 5.8 30 1006-1035 22-51 (73)
288 3mv2_A Coatomer subunit alpha; 23.7 7.3E+02 0.025 26.9 12.9 49 1072-1134 210-258 (325)
289 1om2_A Protein (mitochondrial 22.4 1.2E+02 0.0041 26.6 5.1 37 1181-1217 23-59 (95)
290 3lxu_X Tripeptidyl-peptidase 2 21.9 4.7E+02 0.016 34.5 12.7 32 761-792 1122-1153(1354)
291 4a5x_A MITD1, MIT domain-conta 21.3 3.8E+02 0.013 22.8 8.2 53 499-573 15-67 (86)
292 1mke_A WIP - N-WAsp, fusion pr 21.2 38 0.0013 32.7 1.9 27 137-169 120-146 (152)
293 1wfd_A Hypothetical protein 15 21.1 4E+02 0.014 23.0 9.3 10 794-803 29-38 (93)
294 3t5x_A PCI domain-containing p 20.4 1.8E+02 0.0063 29.4 7.1 34 1180-1213 16-49 (203)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=5.6e-35 Score=347.39 Aligned_cols=384 Identities=14% Similarity=0.115 Sum_probs=286.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHH
Q psy3224 751 EDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWL 830 (1278)
Q Consensus 751 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l 830 (1278)
.+|..+...|++++|+..|.+++..+|++..++..++.++...|++++|
T Consensus 4 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a------------------------------- 52 (388)
T 1w3b_A 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRS------------------------------- 52 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH-------------------------------
T ss_pred hHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-------------------------------
Confidence 3577788889999999999999999999998888888888888877774
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcH
Q psy3224 831 RAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEY 910 (1278)
Q Consensus 831 ~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~ 910 (1278)
...++.+++.+|.+..+|..+|.++...|++++|+..|++++...|++..+|..++.++...|++
T Consensus 53 ---------------~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 117 (388)
T 1w3b_A 53 ---------------AHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117 (388)
T ss_dssp ---------------HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCS
T ss_pred ---------------HHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCH
Confidence 44455555556666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 911 ERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQL 989 (1278)
Q Consensus 911 ~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~ 989 (1278)
++|+..|++++ ..+|++..++..++.++...|++++|+..|++++...|+ ..+|..++.++...|++++|+..
T Consensus 118 ~~A~~~~~~al------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 191 (388)
T 1w3b_A 118 EGAVQAYVSAL------QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191 (388)
T ss_dssp SHHHHHHHHHH------HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHH------HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666665 556666666666666666666777777777777666664 56677777777777777777777
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy3224 990 LDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCA 1069 (1278)
Q Consensus 990 l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~ 1069 (1278)
|++++..+|++..++..+|.++...|++++|+..|.+++...|+++.++..++.++...|++++|+..|++++..+|+++
T Consensus 192 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 271 (388)
T 1w3b_A 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhccc
Q psy3224 1070 ELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKN 1149 (1278)
Q Consensus 1070 ~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~ 1149 (1278)
.+|..++.++...|++++|+..|+++++.+|++..+|..++.++...|++++|+..++++.
T Consensus 272 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------------------- 332 (388)
T 1w3b_A 272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL------------------- 332 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------------------
Confidence 7777777777777777777777777777777777777777777777777777777776552
Q ss_pred ccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCC
Q psy3224 1150 QKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGT 1227 (1278)
Q Consensus 1150 ~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~ 1227 (1278)
+..|+++.++..+|.+|...|++++|+.+|+++++++|+++++|..++.++..+|+
T Consensus 333 ----------------------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 333 ----------------------EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp ----------------------TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred ----------------------hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 12344555888899999999999999999999999999999999999998887764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.5e-35 Score=371.37 Aligned_cols=498 Identities=11% Similarity=0.027 Sum_probs=404.0
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy3224 708 NREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAA 787 (1278)
Q Consensus 708 ~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la 787 (1278)
....|...+..+...|++..|..+++.++...++ ...|..++.++...|++++|+.+|++++.. |.+..+|..++
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~ 157 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDITGN----PNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAA 157 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCC----HHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCC----chHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHH
Confidence 4567778888888888888888888888765543 256777888888888888888888877644 66777888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCchHHHH---Hh----hcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH
Q psy3224 788 YFEKNHGTRESLETLLQKAVAHCPKSEVLW---LM----GAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSE 860 (1278)
Q Consensus 788 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~---~~----~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~ 860 (1278)
.++...|++++|+.+|++ ..|...... .. ........+|...+..+...|++++|+.+|+++++.+|.+.
T Consensus 158 ~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 234 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGE---TNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY 234 (597)
T ss_dssp HHHHHTTCHHHHHHHHCS---SCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHhhHHHHHHHHhc---cCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhh
Confidence 888888888888887775 233321100 00 01122355677777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH---HHHHHHhCCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHH
Q psy3224 861 VLWLMGAKSKWLAGDVPAARGI---LSLAFQANPN-SEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEI 936 (1278)
Q Consensus 861 ~~~~~la~~~~~~g~~~~A~~~---l~~al~~~p~-~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~ 936 (1278)
.++..++.++...+....+... +.......+. ...++..++..+.+.|++++|+.+|++++ .. |.+..+
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~------~~-~~~~~~ 307 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN------GL-EKSSDL 307 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTST------TG-GGCHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhh------cC-CchHHH
Confidence 7777776655433322222111 2222222221 12233444666778899999999999975 33 788999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC
Q psy3224 937 WLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN 1015 (1278)
Q Consensus 937 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 1015 (1278)
|..++.++...|++++|+.+|++++...|. ..+|..++.++...|++++|..++++++...|++..+|..+|.+|...|
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 387 (597)
T 2xpi_A 308 LLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN 387 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999885 5889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 1016 LLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKA 1095 (1278)
Q Consensus 1016 ~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ka 1095 (1278)
++++|+.+|+++++..|.+..+|..++.++...|++++|+.+|++++...|++..+|..++.++...|++++|..+|+++
T Consensus 388 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 388 KISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhc-cCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhC
Q psy3224 1096 LQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCE-HDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKC 1174 (1278)
Q Consensus 1096 l~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~-~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~ 1174 (1278)
++..|.++.+|..++.++.+.|++++|+..|+++. ..|. ....
T Consensus 468 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------------------------~~~~ 511 (597)
T 2xpi_A 468 YALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK------------------------------------TQSN 511 (597)
T ss_dssp HHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------------------------SCCC
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc------------------------------------cccc
Confidence 99999999999999999999999999999999872 2111 0012
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchhhhhh
Q psy3224 1175 EHD-PHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCRVA 1253 (1278)
Q Consensus 1175 p~~-~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w~~~~ 1253 (1278)
|++ +.++..+|.+|...|++++|+.+|+++++.+|+++.+|..++.++...|++++|.++++++++++|+++..|..++
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK 591 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 332 4589999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hcc
Q psy3224 1254 KNV 1256 (1278)
Q Consensus 1254 k~~ 1256 (1278)
+-.
T Consensus 592 ~~~ 594 (597)
T 2xpi_A 592 RAL 594 (597)
T ss_dssp HTT
T ss_pred HHH
Confidence 643
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.8e-33 Score=334.34 Aligned_cols=377 Identities=14% Similarity=0.093 Sum_probs=261.4
Q ss_pred HHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChh
Q psy3224 647 ARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVH 726 (1278)
Q Consensus 647 a~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~ 726 (1278)
.+.|++++|...|.++++..|++..++..++.++...|++++|...++.++...|..
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~----------------------- 66 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL----------------------- 66 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----------------------
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-----------------------
Confidence 345677777777777777777777777777777777777777777776666543322
Q ss_pred HHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 727 TCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKA 806 (1278)
Q Consensus 727 ~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~a 806 (1278)
..+|..+|.++...|++++|+..|++++..+|++..+|..++.++...|++++|+..|+++
T Consensus 67 -------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 127 (388)
T 1w3b_A 67 -------------------AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127 (388)
T ss_dssp -------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH
T ss_pred -------------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567777777777777777777777777777777777777777777777777777777776
Q ss_pred HHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 807 VAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLA 886 (1278)
Q Consensus 807 l~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~a 886 (1278)
++.+|+... +|...+.++...|++++|+.+|++++..+|.+..+|..+|.++...|++++|+..|+++
T Consensus 128 l~~~p~~~~------------~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 195 (388)
T 1w3b_A 128 LQYNPDLYC------------VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195 (388)
T ss_dssp HHHCTTCTH------------HHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHhCCCcHH------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666543 34555556666666666777777777777777777777777777777777777777777
Q ss_pred HHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 887 FQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT 966 (1278)
Q Consensus 887 l~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 966 (1278)
+...|++..++..++.++...|++++|+..|++++ ...|.+..++..++.++...|++++|+..|++++...|+
T Consensus 196 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 269 (388)
T 1w3b_A 196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRAL------SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH------hhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 77777777777777777777777777777776665 556666666666666666667777777776666666664
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy3224 967 -PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLE 1045 (1278)
Q Consensus 967 -~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~ 1045 (1278)
+.+|..++.++...|++++|+.+|+++++..|+++.++..++.++...|++++|+..|+++++..|++..++..++.++
T Consensus 270 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 349 (388)
T 1w3b_A 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 5666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy3224 1046 ERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAG 1083 (1278)
Q Consensus 1046 ~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g 1083 (1278)
...|++++|+..|++++.++|+++.+|..++.++...|
T Consensus 350 ~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 350 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 66666666666666666666666666666666665554
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-33 Score=355.58 Aligned_cols=455 Identities=15% Similarity=0.053 Sum_probs=371.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH----HHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy3224 613 WKAAVELEDPEDARILLSRAVECCPTSVELWLA----LARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAM 688 (1278)
Q Consensus 613 w~al~~l~~~e~A~~~l~kal~~~P~~~~~w~~----la~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 688 (1278)
...+++.+++++|+.+|++++...|++ ..|.. +.+.+++++|+.+|++++.. |.++.+|..++.++.+.|++++
T Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 168 (597)
T 2xpi_A 91 RHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLVKLYDWQG 168 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHHHHhhHHH
Confidence 345677889999999999999988865 44433 44578999999999988654 6688999999999999999999
Q ss_pred HHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHH
Q psy3224 689 VDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAI 768 (1278)
Q Consensus 689 A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 768 (1278)
|..+|++.. |.... +..+...+ ......+....+|..++..+...|++++|+.+
T Consensus 169 A~~~~~~~~---~~~~~----------~~~~~~~~-------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 222 (597)
T 2xpi_A 169 ALNLLGETN---PFRKD----------EKNANKLL-------------MQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222 (597)
T ss_dssp HHHHHCSSC---TTC---------------------------------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhccC---Ccccc----------cccccccc-------------ccccccchhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999888522 22100 00000000 01111233466888888888888888888888
Q ss_pred HHHHHHhCCCCHHHHHHHHH--------------------------------------HHHHcCCHHHHHHHHHHHHHhC
Q psy3224 769 YAQALATFPSKKSIWLRAAY--------------------------------------FEKNHGTRESLETLLQKAVAHC 810 (1278)
Q Consensus 769 ~~~al~~~P~~~~~~~~la~--------------------------------------~~~~~g~~~~A~~~l~~al~~~ 810 (1278)
|++++..+|.+..+|..++. .+...|++++|+.+|++++..
T Consensus 223 ~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~- 301 (597)
T 2xpi_A 223 YKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL- 301 (597)
T ss_dssp HHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-
T ss_pred HHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-
Confidence 88888888888887776644 333567778888888877766
Q ss_pred CchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 811 PKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQAN 890 (1278)
Q Consensus 811 p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 890 (1278)
|.+ ...|...+..+...|++++|+.+|++++...|.+..+|..++.++...|++++|+.+|.+++...
T Consensus 302 ~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 369 (597)
T 2xpi_A 302 EKS------------SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369 (597)
T ss_dssp GGC------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred Cch------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC
Confidence 333 33677788888888999999999999999888888888999999999999999999999999888
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHH
Q psy3224 891 PNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRV 969 (1278)
Q Consensus 891 p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~ 969 (1278)
|++..+|..++.++...|++++|+.+|++++ ...|.+..+|..++.++...|++++|+.+|++++...|. ..+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 443 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSS------TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLP 443 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHH
Confidence 9888999999999999999999999999887 678888999999999999999999999999999888874 688
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHH
Q psy3224 970 MIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKK------CPHS-VPLWIMLA 1042 (1278)
Q Consensus 970 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la 1042 (1278)
|..++.++...|++++|+.+|+++++..|.++.+|..++.++...|++++|+.+|+++++. .|++ ..+|..++
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~ 523 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG 523 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 8888999999999999999999999999988999999999999999999999999999887 5554 77888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccC
Q psy3224 1043 NLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEP 1114 (1278)
Q Consensus 1043 ~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~ 1114 (1278)
.++...|++++|+.+|++++..+|+++.+|..++.++...|++++|..+|+++++.+|+++.++..++.++.
T Consensus 524 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 524 HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999988888887764
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=5.3e-31 Score=326.99 Aligned_cols=266 Identities=10% Similarity=0.073 Sum_probs=153.7
Q ss_pred CHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHH
Q psy3224 949 EYERARRLLAKARASAPT--------PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKA 1020 (1278)
Q Consensus 949 ~~~~A~~~l~~al~~~p~--------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A 1020 (1278)
++++|+.+|++++...|+ ..++..++.++...|++++|+.+|++++...|+ +.++..+|.++...|++++|
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHH
Confidence 444444444444444443 123344444444455555555555555555555 44555555555555555555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q psy3224 1021 HDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECP 1100 (1278)
Q Consensus 1021 ~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P 1100 (1278)
+.+|.+++..+|+++.+|..+|.++...|++++|+..|++++..+|+++.+|..++.++...|++++|+.++.+++...|
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 375 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CcHHHHHHHHhccCCCCChhHHHHHHHHh-ccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHH
Q psy3224 1101 NAGILWAEAIFLEPRPQRKTKSVDALKKC-EHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPH 1179 (1278)
Q Consensus 1101 ~~~~~~~~~~~~~~~~~~~~~A~~~l~k~-~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~ 1179 (1278)
+++.+|..++.++...|++++|+..|+++ ..+|..... .....
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------------------------------------~~~~~ 419 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI------------------------------------HVGIG 419 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC------------------------------------SSTTH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh------------------------------------HHHHH
Confidence 55555555555555555555555555444 111110000 00011
Q ss_pred HHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchh
Q psy3224 1180 VLLAVSKLFWCE----------NKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENW 1249 (1278)
Q Consensus 1180 ~l~~lg~~~~~~----------g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w 1249 (1278)
.+..+|.++... |++++|+.+|+++++.+|+++.+|..++.++...|++++|.+++++++++.|+.++..
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 499 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHH
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 456777888888 9999999999999999999999999999999999999999999999999999988764
Q ss_pred hh
Q psy3224 1250 CR 1251 (1278)
Q Consensus 1250 ~~ 1251 (1278)
..
T Consensus 500 ~~ 501 (537)
T 3fp2_A 500 QA 501 (537)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-31 Score=324.16 Aligned_cols=456 Identities=12% Similarity=0.055 Sum_probs=333.1
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccch
Q psy3224 746 KHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNK 825 (1278)
Q Consensus 746 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~ 825 (1278)
...|+..|..+...|++++|+..|++++..+| +..+|..++.++...|++++|+..++++++.+|.+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---------- 74 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSK---------- 74 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHH----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHH----------
Confidence 56788889999999999999999999999998 6888888888888888888755555555555444432
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHH-
Q psy3224 826 KSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAG---DVPAARGILSLAFQANPNSEEIWLAAV- 901 (1278)
Q Consensus 826 ~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g---~~~~A~~~l~~al~~~p~~~~~~~~la- 901 (1278)
+|+..+.++...|++++|+..|++++...|.+..........+.... ...+++..+..+... |+........+
T Consensus 75 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 151 (514)
T 2gw1_A 75 --VLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT-PTELSTQPAKER 151 (514)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred --HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhccCChhhHH
Confidence 23334444444444444444444444444433222111111111111 111111111111111 11110000000
Q ss_pred -HHHHhcCcHHHHHHHHHHHHHhhh--hhhcCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----h--CCC--
Q psy3224 902 -KLESENNEYERARRLLAKARAQAG--AFQANPNSEEIWLAAVKLESE---NNEYERARRLLAKARA-----S--APT-- 966 (1278)
Q Consensus 902 -~l~~~~g~~~~A~~~l~~al~~~~--~l~~~p~~~~~~~~la~~~~~---~g~~~~A~~~l~~al~-----~--~p~-- 966 (1278)
...............+.... ... ..-..|.+...+...+.++.. .|++++|+.+|++++. . .|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 230 (514)
T 2gw1_A 152 KDKQENLPSVTSMASFFGIFK-PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE 230 (514)
T ss_dssp -----CCCCHHHHHHHHTTSC-CCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred HhhccCCchhHHHHHHHhhcC-HHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccc
Confidence 00000000000000000000 000 001125668888999988876 8999999999999999 5 332
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy3224 967 ------PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIM 1040 (1278)
Q Consensus 967 ------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 1040 (1278)
..++..+|.++...|++++|+.+|++++...|+ ..++..+|.++...|++++|+..|++++..+|.++.++..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 309 (514)
T 2gw1_A 231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHH
Confidence 578899999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChh
Q psy3224 1041 LANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKT 1120 (1278)
Q Consensus 1041 la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~ 1120 (1278)
++.++...|++++|+..|++++...|.+..+|..++.++...|++++|+.++.++++..|+++.+|..++.++...|+++
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-ccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHh---cCCHHH
Q psy3224 1121 KSVDALKKC-EHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWC---ENKNQK 1196 (1278)
Q Consensus 1121 ~A~~~l~k~-~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~---~g~~~~ 1196 (1278)
+|+..++++ ...|... .......++..+|.++.. .|++++
T Consensus 390 ~A~~~~~~a~~~~~~~~------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~ 433 (514)
T 2gw1_A 390 KALKQYDLAIELENKLD------------------------------------GIYVGIAPLVGKATLLTRNPTVENFIE 433 (514)
T ss_dssp HHHHHHHHHHHHHHTSS------------------------------------SCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred HHHHHHHHHHHhhhccc------------------------------------hHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence 999999887 2222200 000012388999999999 999999
Q ss_pred HHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchhhhhh
Q psy3224 1197 CREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCRVA 1253 (1278)
Q Consensus 1197 A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w~~~~ 1253 (1278)
|+.+|++++..+|+++.+|..++.++...|++++|...++++++..|+++..|..+.
T Consensus 434 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 490 (514)
T 2gw1_A 434 ATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490 (514)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988653
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-29 Score=310.29 Aligned_cols=441 Identities=14% Similarity=0.093 Sum_probs=331.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhH
Q psy3224 670 RQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTW 749 (1278)
Q Consensus 670 ~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~ 749 (1278)
...|...|..+...|++++|...|++++... ++...|...+..+...|+++.|...++.++...|.. ..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~ 76 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY---SKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC---HHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH---HHHH
Confidence 4566667777777777777777777776652 224455555555555555555555555555543322 3455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH---H------------------HHHH
Q psy3224 750 MEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLL---Q------------------KAVA 808 (1278)
Q Consensus 750 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l---~------------------~al~ 808 (1278)
+.+|.++...|++++|+..|++++...|.+......+............+...+ + ....
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQE 156 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhcc
Confidence 555555555555555555555555555544332222222111111111111111 0 0000
Q ss_pred hCCchHHHHHhh------------cccchHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----h--C-------CCc
Q psy3224 809 HCPKSEVLWLMG------------AKSNKKSIWLRAAYFEKN---HGTRESLETLLQKAVA-----H--C-------PKS 859 (1278)
Q Consensus 809 ~~p~~~~~~~~~------------~~~~~~~~~l~~a~l~~~---~g~~~~A~~~~~~al~-----~--~-------P~~ 859 (1278)
..|....+.... ..+.....|+..+..... .|++++|+.+|++++. . . |.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (514)
T 2gw1_A 157 NLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL 236 (514)
T ss_dssp CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH
T ss_pred CCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHH
Confidence 011111100000 001225666777766665 8999999999999999 5 3 555
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHH
Q psy3224 860 EVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLA 939 (1278)
Q Consensus 860 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~ 939 (1278)
..++..+|.++...|++++|+..|++++...|. ..++..++.++...|++++|+..+++++ ...|.+..++..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~~~~ 309 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKAL------KLDSNNSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHH------TTCTTCTHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHh------hcCcCCHHHHHH
Confidence 678999999999999999999999999999999 9999999999999999999999999998 889999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHH
Q psy3224 940 AVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLD 1018 (1278)
Q Consensus 940 la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 1018 (1278)
++.++...|++++|+..|++++...|. ..++..++.++...|++++|+.+|++++...|+++.++..+|.++...|+++
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999986 6899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy3224 1019 KAHDTFSQAIKKCPHSVP------LWIMLANLEER---RKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIAN 1089 (1278)
Q Consensus 1019 ~A~~~~~~al~~~p~~~~------~~~~la~l~~~---~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~ 1089 (1278)
+|+.+|++++...|.++. +|..+|.++.. .|++++|+..|++++..+|+++.+|..++.++...|++++|.
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999999988755 99999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcc
Q psy3224 1090 TMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPH 1134 (1278)
Q Consensus 1090 ~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~ 1134 (1278)
..|+++++..|+++.++..+.. ..+...+.....+|.
T Consensus 470 ~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 506 (514)
T 2gw1_A 470 TLFEESADLARTMEEKLQAITF--------AEAAKVQQRIRSDPV 506 (514)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHH--------HHHHHHHHHHTSTHH
T ss_pred HHHHHHHHhccccHHHHHHHHH--------HHHHHHHHHhhCCHH
Confidence 9999999999999998876533 335555555544454
No 8
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=1.3e-28 Score=305.46 Aligned_cols=257 Identities=19% Similarity=0.254 Sum_probs=214.2
Q ss_pred cCCHHHHHHHHHH------HHHh-----CCC--------HHHHHHHHHHHHHc----CC----HHHHHHHHHHHHHhCCC
Q psy3224 947 NNEYERARRLLAK------ARAS-----APT--------PRVMIQSAKLEWCL----DN----LERALQLLDEAIKVFPD 999 (1278)
Q Consensus 947 ~g~~~~A~~~l~~------al~~-----~p~--------~~~~~~la~~~~~~----g~----~~~A~~~l~~al~~~p~ 999 (1278)
.+++..|+.+|.. .+.. .|. ..+|..++.+.... ++ ...++..|++++..+|.
T Consensus 191 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~ 270 (530)
T 2ooe_A 191 SRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH 270 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC
Confidence 3557777776665 3332 232 25777766655432 22 24788899999999999
Q ss_pred hHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 1000 FAKLWMMKGQIEEQ-------KNLLD-------KAHDTFSQAIK-KCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLR 1064 (1278)
Q Consensus 1000 ~~~~~~~la~~~~~-------~g~~~-------~A~~~~~~al~-~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~ 1064 (1278)
++.+|+.+|.++.. .|+++ +|+.+|+++++ .+|++..+|..++.++...|++++|+.+|++++..
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~ 350 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 350 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc
Confidence 99999999999886 78876 89999999997 79999999999999999999999999999999999
Q ss_pred CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhcc-CCCCChhHHHHHHHHhccCcchhhhhhhh
Q psy3224 1065 NPNCA-ELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLE-PRPQRKTKSVDALKKCEHDPHVLLAVSKL 1142 (1278)
Q Consensus 1065 ~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~-~~~~~~~~A~~~l~k~~~~p~~~~~~~~l 1142 (1278)
.|.++ .+|..++.++.+.|++++|+.+|.++++..|.+..++...+.+. ...|++++|..+|+++
T Consensus 351 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a------------- 417 (530)
T 2ooe_A 351 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELG------------- 417 (530)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHH-------------
T ss_pred cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHH-------------
Confidence 99886 68999999999999999999999999999888777766555442 3478888898888865
Q ss_pred hhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh----HHHHH
Q psy3224 1143 FWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGD----AWAYF 1218 (1278)
Q Consensus 1143 ~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d----~~~~l 1218 (1278)
++..|+++.++..++.++...|++++|+.+|++++...|.+++ +|..+
T Consensus 418 ----------------------------l~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~ 469 (530)
T 2ooe_A 418 ----------------------------LKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 469 (530)
T ss_dssp ----------------------------HHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHH
T ss_pred ----------------------------HHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 2345667779999999999999999999999999998877665 99999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy3224 1219 YKFEIINGTEETQAEVKKRCLAAEPK 1244 (1278)
Q Consensus 1219 ~~~~~~~G~~~~A~~~l~ka~~~~P~ 1244 (1278)
..++..+|+.+.+..+.+++++..|+
T Consensus 470 ~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 470 LAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 99999999999999999999999995
No 9
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.97 E-value=1.2e-28 Score=305.95 Aligned_cols=236 Identities=12% Similarity=0.118 Sum_probs=211.0
Q ss_pred HHHHHHHHHHHHc----CCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------cCcHH-------HHHHHHH
Q psy3224 861 VLWLMGAKSKWLA----GDV----PAARGILSLAFQANPNSEEIWLAAVKLESE-------NNEYE-------RARRLLA 918 (1278)
Q Consensus 861 ~~~~~la~~~~~~----g~~----~~A~~~l~~al~~~p~~~~~~~~la~l~~~-------~g~~~-------~A~~~l~ 918 (1278)
.+|..+....... ++. .+|+.+|++++..+|.++.+|+.++.++.. .|+++ +|+.+|+
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~ 310 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE 310 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence 5677766554432 232 478899999999999999999999999886 78876 8999999
Q ss_pred HHHHhhhhhh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 919 KARAQAGAFQ-ANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-P-RVMIQSAKLEWCLDNLERALQLLDEAIK 995 (1278)
Q Consensus 919 ~al~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~-~~~~~la~~~~~~g~~~~A~~~l~~al~ 995 (1278)
+++ . .+|.+..+|..++.++...|++++|+.+|++++...|. + .+|..++.++...|++++|+.+|+++++
T Consensus 311 ~Al------~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 311 RAI------STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHT------TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH------HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 997 6 68999999999999999999999999999999999886 4 6999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----
Q psy3224 996 VFPDFAKLWMMKGQIE-EQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAE---- 1070 (1278)
Q Consensus 996 ~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~---- 1070 (1278)
..|....++...+.+. ...|++++|+.+|+++++.+|+++.+|..++.++...|+.++|+.+|++++...|.++.
T Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 9998888888777664 46899999999999999999999999999999999999999999999999998776554
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Q psy3224 1071 LWLAAIRVEIRAGLKDIANTMMAKALQECPNA 1102 (1278)
Q Consensus 1071 ~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~ 1102 (1278)
+|..++.++...|+.+.+..++.++++.+|++
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCchh
Confidence 89999999999999999999999999999953
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=7.3e-29 Score=307.71 Aligned_cols=437 Identities=12% Similarity=0.042 Sum_probs=311.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH----HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy3224 614 KAAVELEDPEDARILLSRAVECCPTSVELWLALA----RLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMV 689 (1278)
Q Consensus 614 ~al~~l~~~e~A~~~l~kal~~~P~~~~~w~~la----~l~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A 689 (1278)
..+.+.+++++|+..|+++++..|+++.+|..++ +++++++|+..|+++++.+|.+..+|+.+|.++...|++++|
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 112 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDA 112 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHH
Confidence 4577888999999999999999999999987654 569999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHH
Q psy3224 690 DKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIY 769 (1278)
Q Consensus 690 ~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 769 (1278)
...|+ ++...|... ..+ +..+...+....|...+..++...+...............+....+...+...+
T Consensus 113 ~~~~~-~~~~~~~~~-----~~~---~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (537)
T 3fp2_A 113 MFDLS-VLSLNGDFD-----GAS---IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV 183 (537)
T ss_dssp HHHHH-HHC-------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred HHHHH-HHhcCCCCC-----hHH---HHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence 99996 665544331 111 122333344466777787777653322111111122233455566777777776
Q ss_pred HHHHHhCCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCC
Q psy3224 770 AQALATFPSKKSIWLRAAYFEK--------NHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGT 841 (1278)
Q Consensus 770 ~~al~~~P~~~~~~~~la~~~~--------~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~ 841 (1278)
.+.....+....++..+..++. ..+++++|+.+++++++..|.+...+... ..++...+.++...|+
T Consensus 184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~-----~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA-----ALALCYTGIFHFLKNN 258 (537)
T ss_dssp CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHH-----HHHHHHHHHHHHHTTC
T ss_pred hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHH-----HHHHHHHHHHHHhccc
Confidence 6666666665555555554433 34588999999999999999987654321 2345666677777788
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy3224 842 RESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKAR 921 (1278)
Q Consensus 842 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al 921 (1278)
+++|+..|++++..+|. ..++..+|.++...|++++|+..|.+++...|+++.++..++.++...|++++|+..|++++
T Consensus 259 ~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88888888888888887 77788888888888888888888888888888888888888888888888888888888776
Q ss_pred HhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh
Q psy3224 922 AQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF 1000 (1278)
Q Consensus 922 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 1000 (1278)
...|.+..+|..++.++...|++++|+..|++++...|+ +.++..+|.++...|++++|+.+|++++...|++
T Consensus 338 ------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 338 ------SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp ------HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 667777777777777777777777777777777777765 5677777777777777777777777777766644
Q ss_pred H------HHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 1001 A------KLWMMKGQIEEQK----------NLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLR 1064 (1278)
Q Consensus 1001 ~------~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~ 1064 (1278)
. ..+..++.++... |++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|++++.+
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3 2344556666666 77777777777777777777777777777777777777777777777777
Q ss_pred CCCCHHH
Q psy3224 1065 NPNCAEL 1071 (1278)
Q Consensus 1065 ~p~~~~~ 1071 (1278)
.|+++..
T Consensus 492 ~~~~~~~ 498 (537)
T 3fp2_A 492 ARTMDEK 498 (537)
T ss_dssp C--CHHH
T ss_pred CCCcHHH
Confidence 7776655
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=1.9e-28 Score=296.89 Aligned_cols=341 Identities=13% Similarity=0.043 Sum_probs=235.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHH
Q psy3224 654 NARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIR 733 (1278)
Q Consensus 654 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~ 733 (1278)
.+...+..++..+|.+...|+.+|..+...|++++|..+|++++...|.+
T Consensus 10 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~------------------------------ 59 (450)
T 2y4t_A 10 GVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN------------------------------ 59 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------------
T ss_pred cccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc------------------------------
Confidence 34455666777778778888888888888888888888888777653322
Q ss_pred HHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Q psy3224 734 AIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKS 813 (1278)
Q Consensus 734 ~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 813 (1278)
..+|..+|.++...|++++|+..|+++++.+|++..+|..++.++...|++++|+..|++++...|.+
T Consensus 60 ------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 127 (450)
T 2y4t_A 60 ------------YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSE 127 (450)
T ss_dssp ------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCH
T ss_pred ------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 45777788888888888888888888888888888888888888888888888888888888888877
Q ss_pred H---HHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 814 E---VLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQAN 890 (1278)
Q Consensus 814 ~---~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 890 (1278)
. ..|...........++..+..+...|++++|+.+|++++...|.+..++..+|.++...|++++|+..|++++...
T Consensus 128 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 128 NEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK 207 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 6 5444322222222344556666777888888888888888888888888888888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHH------------HHHHHHcCCHHHHHHHHH
Q psy3224 891 PNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAA------------VKLESENNEYERARRLLA 958 (1278)
Q Consensus 891 p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~l~ 958 (1278)
|.++.+|..++.++...|++++|+..|++++ ...|.+...+..+ +.++...|++++|+.+|+
T Consensus 208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 281 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECL------KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYE 281 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888888888888888888888888887 6678777777655 555555556666666666
Q ss_pred HHHHhCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 959 KARASAPT-----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH 1033 (1278)
Q Consensus 959 ~al~~~p~-----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 1033 (1278)
+++...|+ ..++..++.++...|++++|+.++++++...|+++.+|..+|.++...|++++|+..|+++++.+|+
T Consensus 282 ~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 361 (450)
T 2y4t_A 282 SVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361 (450)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 55555554 2345555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHH
Q psy3224 1034 SVPLWIMLA 1042 (1278)
Q Consensus 1034 ~~~~~~~la 1042 (1278)
++.++..++
T Consensus 362 ~~~~~~~l~ 370 (450)
T 2y4t_A 362 DQQIREGLE 370 (450)
T ss_dssp CHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 555555555
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.97 E-value=5.6e-28 Score=292.69 Aligned_cols=317 Identities=14% Similarity=0.061 Sum_probs=182.7
Q ss_pred cchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcc
Q psy3224 743 EDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAK 822 (1278)
Q Consensus 743 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~ 822 (1278)
|.....|+.+|..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|+..|+++++.+|.+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------- 95 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTA------- 95 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-------
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH-------
Confidence 3446677777777777777777777777777777777777777777777777777766666666666665532
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH---HHHHHHH------------HHHHHcCCHHHHHHHHHHHH
Q psy3224 823 SNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSE---VLWLMGA------------KSKWLAGDVPAARGILSLAF 887 (1278)
Q Consensus 823 ~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~---~~~~~la------------~~~~~~g~~~~A~~~l~~al 887 (1278)
+|...+.++...|++++|+..|++++...|.+. .+|..++ .++...|++++|+..|++++
T Consensus 96 -----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 170 (450)
T 2y4t_A 96 -----ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170 (450)
T ss_dssp -----HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445555555566666666666666666666655 5555442 22444455555555555555
Q ss_pred HhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Q psy3224 888 QANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTP 967 (1278)
Q Consensus 888 ~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 967 (1278)
...|.+..++..++.++...|++++|+..|++++ ..+|.+..+|..++.++..
T Consensus 171 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~~~l~~~~~~--------------------- 223 (450)
T 2y4t_A 171 EVCVWDAELRELRAECFIKEGEPRKAISDLKAAS------KLKNDNTEAFYKISTLYYQ--------------------- 223 (450)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH------HHHCSCHHHHHHHHHHHHH---------------------
T ss_pred HhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHH---------------------
Confidence 5555555555555555555555555555555444 3344444444444444444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMK------------GQIEEQKNLLDKAHDTFSQAIKKCPHSV 1035 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l------------a~~~~~~g~~~~A~~~~~~al~~~p~~~ 1035 (1278)
.|++++|+..|++++...|++...+..+ |.++...|++++|+.+|++++...|.++
T Consensus 224 ------------~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~ 291 (450)
T 2y4t_A 224 ------------LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIA 291 (450)
T ss_dssp ------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH
T ss_pred ------------cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch
Confidence 4455555555555444444444444333 5555555566666666666655555553
Q ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHH
Q psy3224 1036 P----LWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAI 1110 (1278)
Q Consensus 1036 ~----~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~ 1110 (1278)
. ++..++.++...|++++|+.+|++++..+|+++.+|..++.++...|++++|...|+++++..|+++.++..++
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 2 44555555555666666666666666555655555556666555666666666666666665565555555444
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.97 E-value=4.3e-27 Score=274.56 Aligned_cols=332 Identities=13% Similarity=0.040 Sum_probs=280.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy3224 826 KSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLES 905 (1278)
Q Consensus 826 ~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~ 905 (1278)
...|+..+..+...|++++|+..|+++++.+|.++.+++.+|.++...|++++|+..|+++++..|++..++..++.++.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 34577777777788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred hcCcHHHHHHHHHHHHHhhhhhhcCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q psy3224 906 ENNEYERARRLLAKARAQAGAFQANP---NSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDN 982 (1278)
Q Consensus 906 ~~g~~~~A~~~l~~al~~~~~l~~~p---~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~ 982 (1278)
..|++++|+..|++++ ...| .+..++..++.++.. ..+...+.++...|+
T Consensus 83 ~~~~~~~A~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~---------------------~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVL------KSNPSEQEEKEAESQLVKADEM---------------------QRLRSQALDAFDGAD 135 (359)
T ss_dssp HHTCHHHHHHHHHHHH------TSCCCHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHTTC
T ss_pred HcCChHHHHHHHHHHH------hcCCcccChHHHHHHHHHHHHH---------------------HHHHHHHHHHHHccC
Confidence 8888888888888876 6777 777777766655331 234556788889999
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 983 LERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGR 1062 (1278)
Q Consensus 983 ~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal 1062 (1278)
+++|+.+|++++...|+++.++..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++
T Consensus 136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhc
Q psy3224 1063 LRNPNCAELWLAA------------IRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCE 1130 (1278)
Q Consensus 1063 ~~~p~~~~~~~~l------------~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~ 1130 (1278)
...|+++..|..+ +.++...|++++|...+.+++...|+++..+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------------- 272 (359)
T 3ieg_A 216 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTV----------------------- 272 (359)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHH-----------------------
T ss_pred hhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH-----------------------
Confidence 9999998876544 66788899999999999999999988765433
Q ss_pred cCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q psy3224 1131 HDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPD 1210 (1278)
Q Consensus 1131 ~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~ 1210 (1278)
.++..+|.++...|++++|+.+|+++++.+|+
T Consensus 273 ------------------------------------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 273 ------------------------------------------------RSKERICHCFSKDEKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ------------------------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 05677888999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchhhhhhhc
Q psy3224 1211 LGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCRVAKN 1255 (1278)
Q Consensus 1211 ~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w~~~~k~ 1255 (1278)
++.+|..++.++...|++++|...++++++.+|+++..|..+.+.
T Consensus 305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999888887664
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.96 E-value=1.3e-26 Score=270.49 Aligned_cols=318 Identities=14% Similarity=0.032 Sum_probs=226.1
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccch
Q psy3224 746 KHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNK 825 (1278)
Q Consensus 746 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~ 825 (1278)
...|+.+|..+...|++++|+.+|++++..+|++..+|..++.++...|++++|+..++++++..|.+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------- 72 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTA---------- 72 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcch----------
Confidence 4567777777777788888888888888777777777777777777777777777777777777666543
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CcHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 826 KSIWLRAAYFEKNHGTRESLETLLQKAVAHCP---KSEVLWLMG------------AKSKWLAGDVPAARGILSLAFQAN 890 (1278)
Q Consensus 826 ~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P---~~~~~~~~l------------a~~~~~~g~~~~A~~~l~~al~~~ 890 (1278)
+|...+.++...|++++|+..|+++++..| .+..++..+ |.++...|++++|+..|.+++...
T Consensus 73 --~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 73 --ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC 150 (359)
T ss_dssp --HHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 455566666666777777777777777777 666666555 577777777788888887777777
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHH
Q psy3224 891 PNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRV 969 (1278)
Q Consensus 891 p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~ 969 (1278)
|.++.++..++.++...|++++|+..+++++ ...|.++.+|..++.++...|++++|+..|++++...|+ ...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 224 (359)
T 3ieg_A 151 VWDAELRELRAECFIKEGEPRKAISDLKAAS------KLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC 224 (359)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------TTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHH
Confidence 7777777777777777777777777777776 667777777777777777777777777777777777765 232
Q ss_pred HH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCChHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 970 MI------------QSAKLEWCLDNLERALQLLDEAIKVFPDFAK----LWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH 1033 (1278)
Q Consensus 970 ~~------------~la~~~~~~g~~~~A~~~l~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 1033 (1278)
+. ..|.++...|++++|+..|++++...|+++. ++..+|.++...|++++|+.+|+++++.+|+
T Consensus 225 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 304 (359)
T 3ieg_A 225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD 304 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 22 3355666667777777777777777666553 3445666667777777777777777777776
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 1034 SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIR 1081 (1278)
Q Consensus 1034 ~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~ 1081 (1278)
++.+|..+|.++...|++++|+..|+++++++|+++.++..+..+...
T Consensus 305 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 305 NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 677777777777777777777777777777777766666666655443
No 15
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=6.7e-26 Score=276.46 Aligned_cols=399 Identities=15% Similarity=0.033 Sum_probs=264.4
Q ss_pred hHhhHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHH
Q psy3224 745 RKHTWMEDAESCANQGAYECARAIYAQALAT---------FPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEV 815 (1278)
Q Consensus 745 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 815 (1278)
...++..+|.++...|++++|+..|+++++. +|.....|..+|.++...|++++|...+++++++.+....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4567888999999999999999999999986 6777889999999999999999999999999876443210
Q ss_pred HHHhhcccchHHHHHHH--HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC
Q psy3224 816 LWLMGAKSNKKSIWLRA--AYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWL---AGDVPAARGILSLAFQAN 890 (1278)
Q Consensus 816 ~~~~~~~~~~~~~~l~~--a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~---~g~~~~A~~~l~~al~~~ 890 (1278)
. .......++... +.+....+++++|+.+|+++++.+|+++.++..++.++.. .++.++|++.|+++++.+
T Consensus 130 ~----~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 130 P----YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp S----SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred c----cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 0 000112233333 3344445678888888888888888888888888877543 567778888888888888
Q ss_pred CCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 891 PNSEEIWLAAVKLESE----NNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT 966 (1278)
Q Consensus 891 p~~~~~~~~la~l~~~----~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 966 (1278)
|++..++..++..+.. .+++++|..++++++ ...|.+..++..+|.++...|++++|+..|+++++..|+
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL------EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHH------HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH------HhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 8888887777655443 355667777777776 667777777777777777777777777777777777765
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy3224 967 -PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLE 1045 (1278)
Q Consensus 967 -~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~ 1045 (1278)
+.++..+|.++...+....+.. ....+......+.++.|...|++++..+|.+..++..+|.++
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~ 344 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVMNLR---------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLH 344 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHH---------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHH
Confidence 4666666666543221111100 011111112234467889999999999999998999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhH
Q psy3224 1046 ERRKMLIKARSVLEKGRLRNPNCAE---LWLAAIRV-EIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTK 1121 (1278)
Q Consensus 1046 ~~~g~~~~A~~~l~kal~~~p~~~~---~~~~l~~~-~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~ 1121 (1278)
...|++++|+..|++++...|++.. ++..++.+ +...|++++|+..|.++++..|++........ .
T Consensus 345 ~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~----------~ 414 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD----------K 414 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHH----------H
T ss_pred HHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH----------H
Confidence 9999999999999999998887654 34555553 45678999999999999999998754322111 1
Q ss_pred HHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy3224 1122 SVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWF 1201 (1278)
Q Consensus 1122 A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~ 1201 (1278)
+..++ ...+..+|+++.++..+|.+|...|++++|+++|
T Consensus 415 l~~~~-----------------------------------------~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y 453 (472)
T 4g1t_A 415 LQKIA-----------------------------------------KMRLSKNGADSEALHVLAFLQELNEKMQQADEDS 453 (472)
T ss_dssp HHHHH-----------------------------------------HHHHHHCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred HHHHH-----------------------------------------HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 11111 1234556777778999999999999999999999
Q ss_pred HHHHhhCCCChhHHHHHH
Q psy3224 1202 NRTVKIDPDLGDAWAYFY 1219 (1278)
Q Consensus 1202 ~kal~~~P~~~d~~~~l~ 1219 (1278)
++|+++.|.+|.++.+++
T Consensus 454 ~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 454 ERGLESGSLIPSASSWNG 471 (472)
T ss_dssp ------------------
T ss_pred HHHHhcCCCCCcHhhcCC
Confidence 999999999888887765
No 16
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.95 E-value=3.7e-24 Score=266.92 Aligned_cols=459 Identities=13% Similarity=0.127 Sum_probs=309.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHh----cC---HHHHHHHHHHHH
Q psy3224 595 KRRVYRKALEHIPNSVRLWKAAVEL----EDPEDARILLSRAVECCPTSVELWLALARL----ET---YENARKVLNKAR 663 (1278)
Q Consensus 595 A~~ll~rAle~~P~s~~Lw~al~~l----~~~e~A~~~l~kal~~~P~~~~~w~~la~l----~~---~~~A~~~l~~al 663 (1278)
.+..|++++..+|.+...|..|++. +.++.++.+|++++...|.+..+|..|+.+ ++ ++.+..+|++++
T Consensus 51 ~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 51 VIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 4567788888888888888877754 377778888888888888888888777754 45 777888888888
Q ss_pred HhCC--CCHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHhhhh-CCccccHHHHHHHHHHHHHcCChhHHHHHH
Q psy3224 664 ENIP--TDRQIWTTAAKLEEAHGNN--------AMVDKIIDRALSSLSA-NGVEINREHWFKEAIEAEKAGSVHTCQALI 732 (1278)
Q Consensus 664 ~~~p--~~~~~~~~la~~~~~~g~~--------~~A~~il~~al~~~~~-~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~ 732 (1278)
...| .+.++|..++......++. +.+..+|++++..+.. + ......|..++......+...
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d--~~s~~iW~~Yi~f~~~~~~~~------ 202 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFE--PKSIQFWNEYLHFLEHWKPVN------ 202 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTC--SSCHHHHHHHHHHHHTCCCCS------
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCccc--ccchHHHHHHHHHHHhccccC------
Confidence 7773 4777888877777766664 2233556666654322 1 122345555554433210000
Q ss_pred HHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C-HHHHHHHHHHHHHcC-------------CHH
Q psy3224 733 RAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPS-K-KSIWLRAAYFEKNHG-------------TRE 797 (1278)
Q Consensus 733 ~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~-~-~~~~~~la~~~~~~g-------------~~~ 797 (1278)
-...+++++.++.+|++++.. |. + ..+|..+..+....+ ++.
T Consensus 203 ----------------------~~eeq~~~~~~R~iy~raL~i-P~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~ 259 (679)
T 4e6h_A 203 ----------------------KFEEQQRVQYIRKLYKTLLCQ-PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYM 259 (679)
T ss_dssp ----------------------HHHHHHHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHH
T ss_pred ----------------------cHHHHhHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHH
Confidence 000122344444555555432 22 1 233433333333221 122
Q ss_pred HHHHHHHHHHHh-------CCchHH---HHHhh----cccchHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHhC
Q psy3224 798 SLETLLQKAVAH-------CPKSEV---LWLMG----AKSNKKSIWLRAAYFEKNHG-------TRESLETLLQKAVAHC 856 (1278)
Q Consensus 798 ~A~~~l~~al~~-------~p~~~~---~~~~~----~~~~~~~~~l~~a~l~~~~g-------~~~~A~~~~~~al~~~ 856 (1278)
.|...+...-.. .|.... .+..- .......+|..++.++...+ ....+..+|++++..+
T Consensus 260 ~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~ 339 (679)
T 4e6h_A 260 NARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV 339 (679)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc
Confidence 233333221111 111000 00000 00122468999999988754 2345678899999999
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhh-h----hcC
Q psy3224 857 PKSEVLWLMGAKSKWLAGDVPAAR-GILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGA-F----QAN 930 (1278)
Q Consensus 857 P~~~~~~~~la~~~~~~g~~~~A~-~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~-l----~~~ 930 (1278)
|.++.+|+.++.++...|+.++|+ .+|++|+..+|.+..+|+.++.++...|++++|+.+|++++..... . ...
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 999999999999999999999996 9999999999999999999999999999999999999998732110 0 001
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCChHHHHHHHHH
Q psy3224 931 PNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKV-FPDFAKLWMMKGQ 1009 (1278)
Q Consensus 931 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~~~~~~~la~ 1009 (1278)
|.+. ..+..+.. ....+|..++.+..+.|+.+.|+.+|.+|++. .+....+|...+.
T Consensus 420 p~~~-----------------~~~~~~~~-----~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~ 477 (679)
T 4e6h_A 420 PTNE-----------------SAINQLKS-----KLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAY 477 (679)
T ss_dssp TTCH-----------------HHHHHHHH-----HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHH
T ss_pred Ccch-----------------hhhhhhcc-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 2110 00000000 01357888888888888888899999988887 4445778888888
Q ss_pred HHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCH
Q psy3224 1010 IEEQKNL-LDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNP---NCAELWLAAIRVEIRAGLK 1085 (1278)
Q Consensus 1010 ~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p---~~~~~~~~l~~~~~~~g~~ 1085 (1278)
+....++ ++.|+.+|+.+++.+|+++.+|..++.++...|+.+.|+.+|++++...| ....+|..++.++...|+.
T Consensus 478 lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~ 557 (679)
T 4e6h_A 478 IEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL 557 (679)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 8877654 89999999999999999999999999999999999999999999999888 4668899999999999999
Q ss_pred HHHHHHHHHHHHHCCCcHHHH
Q psy3224 1086 DIANTMMAKALQECPNAGILW 1106 (1278)
Q Consensus 1086 ~~A~~~~~kal~~~P~~~~~~ 1106 (1278)
+.+..+++++++.+|+++.+-
T Consensus 558 ~~~~~v~~R~~~~~P~~~~~~ 578 (679)
T 4e6h_A 558 NSVRTLEKRFFEKFPEVNKLE 578 (679)
T ss_dssp HHHHHHHHHHHHHSTTCCHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHH
Confidence 999999999999999876443
No 17
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.94 E-value=5.9e-24 Score=265.13 Aligned_cols=423 Identities=13% Similarity=0.139 Sum_probs=284.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCC---H
Q psy3224 766 RAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGT---R 842 (1278)
Q Consensus 766 ~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~---~ 842 (1278)
+..|++.+..+|.+...|..++..+...+.++.++.+|++++...|.... +|..++.++...++ +
T Consensus 52 i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~------------lW~~Yi~~E~~~~~~~~~ 119 (679)
T 4e6h_A 52 IGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMAN------------IWCMRLSLEFDKMEELDA 119 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------HHHHHHHHHHTC--CCCH
T ss_pred HHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHH------------HHHHHHHHHHhhCCcchH
Confidence 34445555555555555555555555555555555555555555555432 34444444444444 5
Q ss_pred HHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHh----CCCCHHHHHHHHHHHHh--
Q psy3224 843 ESLETLLQKAVAHCP--KSEVLWLMGAKSKWLAGDV--------PAARGILSLAFQA----NPNSEEIWLAAVKLESE-- 906 (1278)
Q Consensus 843 ~~A~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~--------~~A~~~l~~al~~----~p~~~~~~~~la~l~~~-- 906 (1278)
+.+..+|++++...| .+..+|..+.......++. +..+.+|++|+.. ++.+..+|..++.++..
T Consensus 120 ~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 120 AVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp HHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 555555555555542 3444555555444443332 2223444444432 33344555555544331
Q ss_pred -------cCcHHHHHHHHHHHHHhhhhhhcCCC--cHHHHHHHHHHHH-------------HcCCHHHHHHHHHHHHHh-
Q psy3224 907 -------NNEYERARRLLAKARAQAGAFQANPN--SEEIWLAAVKLES-------------ENNEYERARRLLAKARAS- 963 (1278)
Q Consensus 907 -------~g~~~~A~~~l~~al~~~~~l~~~p~--~~~~~~~la~~~~-------------~~g~~~~A~~~l~~al~~- 963 (1278)
+++.+.++.+|.+++ . .|. ...+|..+..+.. ...+++.|+..+...-..
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL------~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~ 272 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLL------C-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNIT 272 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHT------T-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCcHHHHhHHHHHHHHHHHHH------h-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 223444555555543 1 121 1233333322221 122344455555432111
Q ss_pred ------C------------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy3224 964 ------A------------P-----T---PRVMIQSAKLEWCLD-------NLERALQLLDEAIKVFPDFAKLWMMKGQI 1010 (1278)
Q Consensus 964 ------~------------p-----~---~~~~~~la~~~~~~g-------~~~~A~~~l~~al~~~p~~~~~~~~la~~ 1010 (1278)
. | . ..+|..++.+....+ .......+|++++..+|.++.+|+.++.+
T Consensus 273 ~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~ 352 (679)
T 4e6h_A 273 KGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANY 352 (679)
T ss_dssp TTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 0 1 0 267888887766543 13456788999999999999999999999
Q ss_pred HHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCC-----------
Q psy3224 1011 EEQKNLLDKAH-DTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLR-----------NPN----------- 1067 (1278)
Q Consensus 1011 ~~~~g~~~~A~-~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~-----------~p~----------- 1067 (1278)
+...|+.++|+ .+|++++..+|.+..+|+.++.++...|++++|+.+|++++.. .|.
T Consensus 353 ~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~ 432 (679)
T 4e6h_A 353 QGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432 (679)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccc
Confidence 99999999997 9999999999999999999999999999999999999999975 253
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHhccCCCC-ChhHHHHHHHHhccCcchhhhhhhhhhh
Q psy3224 1068 CAELWLAAIRVEIRAGLKDIANTMMAKALQE-CPNAGILWAEAIFLEPRPQ-RKTKSVDALKKCEHDPHVLLAVSKLFWC 1145 (1278)
Q Consensus 1068 ~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~-~P~~~~~~~~~~~~~~~~~-~~~~A~~~l~k~~~~p~~~~~~~~l~~~ 1145 (1278)
...+|..++.++.+.|+.+.|..+|.+|++. .+....+|...+.+..+.+ +.+.|..+|+.+
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~---------------- 496 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELG---------------- 496 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHH----------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHH----------------
Confidence 3468999999999999999999999999988 4445678887777776654 478888888765
Q ss_pred hcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC---CChhHHHHHHHHH
Q psy3224 1146 ENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDP---DLGDAWAYFYKFE 1222 (1278)
Q Consensus 1146 ~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P---~~~d~~~~l~~~~ 1222 (1278)
|+..|+++.++...+.++...|+.+.|+.+|++|+...| ...++|..+..++
T Consensus 497 -------------------------Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 497 -------------------------LKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp -------------------------HHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred -------------------------HHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 233455666888888888999999999999999999988 4678999999999
Q ss_pred HHhCCHHHHHHHHHHHHHhCCCCcch
Q psy3224 1223 IINGTEETQAEVKKRCLAAEPKHGEN 1248 (1278)
Q Consensus 1223 ~~~G~~~~A~~~l~ka~~~~P~~~~~ 1248 (1278)
..+|+.+.+..+.+|+.+..|+++.+
T Consensus 552 ~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 552 SKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 99999999999999999999998653
No 18
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.94 E-value=4.5e-25 Score=269.12 Aligned_cols=369 Identities=15% Similarity=0.063 Sum_probs=287.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHh---------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Q psy3224 827 SIWLRAAYFEKNHGTRESLETLLQKAVAH---------CPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQAN------- 890 (1278)
Q Consensus 827 ~~~l~~a~l~~~~g~~~~A~~~~~~al~~---------~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~------- 890 (1278)
.++..++.++...|++++|+..|+++++. +|....+|..+|.+|...|++++|+..|++++.+.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence 35667788899999999999999999986 56777889999999999999999999999999864
Q ss_pred -CCCHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhC
Q psy3224 891 -PNSEEIWLAAVKLES--ENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLES---ENNEYERARRLLAKARASA 964 (1278)
Q Consensus 891 -p~~~~~~~~la~l~~--~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~---~~g~~~~A~~~l~~al~~~ 964 (1278)
+..+.++...+..+. ..+++++|+.+|++++ ..+|+++.++..++.++. ..++.++|+..|++++..+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal------~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL------EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH------HHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 345677777665554 4568999999999998 889999999999888754 4577789999999999999
Q ss_pred CC-HHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy3224 965 PT-PRVMIQSAKLEW----CLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039 (1278)
Q Consensus 965 p~-~~~~~~la~~~~----~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 1039 (1278)
|. +.++..++..+. ..+++++|..+|++++...|.++.++..+|.++...|++++|+..|.++++..|+++.++.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 86 567766665544 4578899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q psy3224 1040 MLANLEER-------------------RKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECP 1100 (1278)
Q Consensus 1040 ~la~l~~~-------------------~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P 1100 (1278)
.+|.++.. .+.+++|+..|++++..+|.+..++..++.++...|++++|+.+|++++...|
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 99988754 23467899999999999999999999999999999999999999999999998
Q ss_pred CcHH---HHHHHHhc-cCCCCChhHHHHHHHHh-ccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCC
Q psy3224 1101 NAGI---LWAEAIFL-EPRPQRKTKSVDALKKC-EHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCE 1175 (1278)
Q Consensus 1101 ~~~~---~~~~~~~~-~~~~~~~~~A~~~l~k~-~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p 1175 (1278)
++.. ++..++.+ +...+++++|+..|+++ ..+|.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~----------------------------------------- 404 (472)
T 4g1t_A 366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK----------------------------------------- 404 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC-----------------------------------------
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-----------------------------------------
Confidence 8754 34444443 35688999999999887 33444
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchhhhhh
Q psy3224 1176 HDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCRVA 1253 (1278)
Q Consensus 1176 ~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w~~~~ 1253 (1278)
+... .+....+..++++++..+|+++.+|..++.++...|+.++|.+++++++++.|..|..+..++
T Consensus 405 -~~~~----------~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 405 -SREK----------EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp -CHHH----------HHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred -cHHH----------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 1111 223345677889999999999999999999999999999999999999999999887766544
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.2e-24 Score=250.90 Aligned_cols=270 Identities=15% Similarity=0.027 Sum_probs=173.8
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC-cHHHHHHH
Q psy3224 838 NHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENN-EYERARRL 916 (1278)
Q Consensus 838 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g-~~~~A~~~ 916 (1278)
..|++++|+.+|+++++.+|.+..++..++.++...|++++|+..+.++++..|+++.+|..++.++...| ++++|+..
T Consensus 34 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 113 (330)
T 3hym_B 34 YNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRY 113 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 33444445555555555555555555555555555566666666666666666655556666666655555 56666666
Q ss_pred HHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 917 LAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIK 995 (1278)
Q Consensus 917 l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~ 995 (1278)
|++++ ...|.+..+|..++.++...|++++|+..|++++...|. ...+..++.++...|++++|+.+|++++.
T Consensus 114 ~~~a~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 187 (330)
T 3hym_B 114 LSKAT------TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS 187 (330)
T ss_dssp HHHHH------TTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHH------HhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66555 555555566666666666666666666666666666654 35566666666666667777777777777
Q ss_pred hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 996 VFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKC---------PHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNP 1066 (1278)
Q Consensus 996 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p 1066 (1278)
..|+++.++..+|.++...|++++|+.+|++++... |..+.++..+|.++...|++++|+.+|++++..+|
T Consensus 188 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 267 (330)
T 3hym_B 188 IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267 (330)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc
Confidence 777667777777777777777777777777776664 44556667777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhcc
Q psy3224 1067 NCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLE 1113 (1278)
Q Consensus 1067 ~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~ 1113 (1278)
+++.+|..++.++...|++++|...|+++++..|+++.++..++.++
T Consensus 268 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 268 QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence 77777777777777777777777777777777777776666666655
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.8e-24 Score=249.42 Aligned_cols=287 Identities=15% Similarity=0.059 Sum_probs=174.8
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccch
Q psy3224 746 KHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNK 825 (1278)
Q Consensus 746 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~ 825 (1278)
..+++.+|..+...|++++|+.+|++++..+|.+..++..++.++...|++++|...++++++.+|.+..
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------- 91 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV---------- 91 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH----------
Confidence 4578888888888888888888888888888888888888888887777777766555555555554432
Q ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy3224 826 KSIWLRAAYFEKNHG-TRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLE 904 (1278)
Q Consensus 826 ~~~~l~~a~l~~~~g-~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~ 904 (1278)
+|...+.++...| ++++|+..|++++..+|.+..+|..+|.++...|++++|+..|++++...|++...+..++.++
T Consensus 92 --~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 169 (330)
T 3hym_B 92 --SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY 169 (330)
T ss_dssp --HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3334444444444 4555555555555555555555555555555555555555555555555554444444445444
Q ss_pred HhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCH
Q psy3224 905 SENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNL 983 (1278)
Q Consensus 905 ~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~ 983 (1278)
. ..|++++|+..|++++...|. +.++..++.++...|++
T Consensus 170 ~----------------------------------------~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 209 (330)
T 3hym_B 170 G----------------------------------------LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEW 209 (330)
T ss_dssp H----------------------------------------HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCH
T ss_pred H----------------------------------------HHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccH
Confidence 4 555555555555555554443 34555555555555555
Q ss_pred HHHHHHHHHHHHhC---------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy3224 984 ERALQLLDEAIKVF---------PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKA 1054 (1278)
Q Consensus 984 ~~A~~~l~~al~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A 1054 (1278)
++|+.+|++++... |..+.++..+|.++...|++++|+.+|+++++..|+++.+|..+|.++...|++++|
T Consensus 210 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 210 KTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence 55555555555543 444566666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-HHcCC
Q psy3224 1055 RSVLEKGRLRNPNCAELWLAAIRVE-IRAGL 1084 (1278)
Q Consensus 1055 ~~~l~kal~~~p~~~~~~~~l~~~~-~~~g~ 1084 (1278)
+.+|++++.++|+++.++..++.++ ...|+
T Consensus 290 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 290 VDYFHTALGLRRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence 6666666666666666666666655 34444
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.93 E-value=1.5e-24 Score=254.88 Aligned_cols=291 Identities=14% Similarity=0.105 Sum_probs=193.5
Q ss_pred cCCHHHHHH-HHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q psy3224 793 HGTRESLET-LLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKW 871 (1278)
Q Consensus 793 ~g~~~~A~~-~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~ 871 (1278)
.|++++|+. .+.+++...|.++.. ....|+..+..+...|++++|+..|+++++.+|.+..+|..+|.++.
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLR--------DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTT--------TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCccc--------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 455666665 666555555544310 01134555555566666666777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHH-------------
Q psy3224 872 LAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWL------------- 938 (1278)
Q Consensus 872 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~------------- 938 (1278)
..|++++|+..|+++++..|++..++..++.++...|++++|+..+++++ ...|.+...+.
T Consensus 110 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 1fch_A 110 ENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL------RYTPAYAHLVTPAEEGAGGAGLGP 183 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HTSTTTGGGCC-------------
T ss_pred HCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCcCcHHHHHHHHHHhhhhcccH
Confidence 77777777777777777777777777777777777777777777777766 55555554443
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy3224 939 ---AAVKLESENNEYERARRLLAKARASAPT---PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEE 1012 (1278)
Q Consensus 939 ---~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 1012 (1278)
.++.++ ..|++++|+..|++++...|. +.++..+|.++...|++++|+.+|++++...|+++.+|..+|.++.
T Consensus 184 ~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 262 (368)
T 1fch_A 184 SKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA 262 (368)
T ss_dssp --CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 334444 667777777777777777665 5677777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHH
Q psy3224 1013 QKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNC-----------AELWLAAIRVEIR 1081 (1278)
Q Consensus 1013 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~-----------~~~~~~l~~~~~~ 1081 (1278)
..|++++|+..|++++..+|.++.++..+|.++...|++++|+.+|++++.+.|++ ..+|..++.++..
T Consensus 263 ~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (368)
T 1fch_A 263 NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 342 (368)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777666 6677777777777
Q ss_pred cCCHHHHHHHHHHHHHH
Q psy3224 1082 AGLKDIANTMMAKALQE 1098 (1278)
Q Consensus 1082 ~g~~~~A~~~~~kal~~ 1098 (1278)
.|++++|..++.+++..
T Consensus 343 ~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 343 LGQSDAYGAADARDLST 359 (368)
T ss_dssp HTCGGGHHHHHTTCHHH
T ss_pred hCChHhHHHhHHHHHHH
Confidence 77777777776665543
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.93 E-value=3.9e-22 Score=244.64 Aligned_cols=387 Identities=12% Similarity=-0.003 Sum_probs=220.0
Q ss_pred HhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCchHHHH
Q psy3224 746 KHTWMEDAESCAN----QGAYECARAIYAQALATFPSKKSIWLRAAYFEKN----HGTRESLETLLQKAVAHCPKSEVLW 817 (1278)
Q Consensus 746 ~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~ 817 (1278)
..+++.+|.++.. .+++++|+.+|+++++. .+..++..++.++.. .+++++|+..|+++.+.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------- 108 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-------- 108 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------
Confidence 4577777777777 77888888888888765 567777777777777 66666666666665543
Q ss_pred HhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC
Q psy3224 818 LMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWL----AGDVPAARGILSLAFQANPNS 893 (1278)
Q Consensus 818 ~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~ 893 (1278)
.++.+++.+|.+|.. .+++++|+..|+++... .+
T Consensus 109 ----------------------------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~ 146 (490)
T 2xm6_A 109 ----------------------------------------GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GR 146 (490)
T ss_dssp ----------------------------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TC
T ss_pred ----------------------------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC
Confidence 233444444444444 44444444444444432 23
Q ss_pred HHHHHHHHHHHHh----cCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC
Q psy3224 894 EEIWLAAVKLESE----NNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESE----NNEYERARRLLAKARASAP 965 (1278)
Q Consensus 894 ~~~~~~la~l~~~----~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p 965 (1278)
+.++..++.++.. .+++++|+..|+++. . ..++.++..++.+|.. .+++++|+..|+++....
T Consensus 147 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~------~--~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 217 (490)
T 2xm6_A 147 DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAA------E--QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG- 217 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH------H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH------H--CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-
Confidence 4444444444443 444444444444443 1 1344444444444444 445555555555554432
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 966 TPRVMIQSAKLEWC----LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQ----KNLLDKAHDTFSQAIKKCPHSVPL 1037 (1278)
Q Consensus 966 ~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 1037 (1278)
++..++.++.++.. .+++++|+.+|++++.. .++.+++.+|.++.. .+++++|+.+|+++++. .++.+
T Consensus 218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a 293 (490)
T 2xm6_A 218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDG 293 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHH
Confidence 34444455555543 45555555555555443 234455555555554 55555555555555433 34455
Q ss_pred HHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHCCCcHHHHHHH
Q psy3224 1038 WIMLANLEERR-----KMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAG---LKDIANTMMAKALQECPNAGILWAEA 1109 (1278)
Q Consensus 1038 ~~~la~l~~~~-----g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~kal~~~P~~~~~~~~~ 1109 (1278)
+..++.++... +++++|+.+|+++++. .++.++..++.++...| ++++|+.+|+++++. .++.++..+
T Consensus 294 ~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~L 369 (490)
T 2xm6_A 294 QYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNL 369 (490)
T ss_dssp HHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 55555555554 5555555555555543 23445555555555434 455555555555544 344555555
Q ss_pred HhccCC----CCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHH
Q psy3224 1110 IFLEPR----PQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVS 1185 (1278)
Q Consensus 1110 ~~~~~~----~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg 1185 (1278)
+.++.. .+++++|+..|+++... .++.+++.+|
T Consensus 370 g~~y~~g~g~~~~~~~A~~~~~~A~~~-------------------------------------------~~~~a~~~Lg 406 (490)
T 2xm6_A 370 GNALLQGKGVKKDEQQAAIWMRKAAEQ-------------------------------------------GLSAAQVQLG 406 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-------------------------------------------TCHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHhC-------------------------------------------CCHHHHHHHH
Confidence 555544 45555555555554211 1123788999
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhhCCC---ChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc
Q psy3224 1186 KLFWC----ENKNQKCREWFNRTVKIDPD---LGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHG 1246 (1278)
Q Consensus 1186 ~~~~~----~g~~~~A~~~~~kal~~~P~---~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~ 1246 (1278)
.+|.. .+++++|+.+|++|++..|+ ++.++.+++.++.. +...+.++.+++++..|++.
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~ 472 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEA 472 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHH
Confidence 99988 89999999999999999954 78888888776554 34555666677766655443
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=3.2e-24 Score=251.93 Aligned_cols=285 Identities=15% Similarity=0.107 Sum_probs=259.2
Q ss_pred hcCCHHHHHH-HHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHH
Q psy3224 838 NHGTRESLET-LLQKAVAHCPKSE----VLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYER 912 (1278)
Q Consensus 838 ~~g~~~~A~~-~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~ 912 (1278)
..+++++|+. .|++++...|.++ ..++.+|.++...|++++|+..|+++++..|.+..+|..++.++...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3478888999 9999998888764 5689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH-HHHH----------------HHHH
Q psy3224 913 ARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTP-RVMI----------------QSAK 975 (1278)
Q Consensus 913 A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~----------------~la~ 975 (1278)
|+..|++++ ...|.+..++..++.++...|++++|+..|++++...|.. ..+. .++.
T Consensus 117 A~~~~~~al------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 117 AISALRRCL------ELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp HHHHHHHHH------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHH
T ss_pred HHHHHHHHH------hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 999999998 7899999999999999999999999999999999998863 2222 3555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy3224 976 LEWCLDNLERALQLLDEAIKVFPD--FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIK 1053 (1278)
Q Consensus 976 ~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~ 1053 (1278)
++ ..|++++|+.+|++++...|+ ++.++..+|.++...|++++|+.+|++++..+|.++.+|..+|.++...|++++
T Consensus 191 ~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred Hh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHH
Confidence 55 899999999999999999999 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-----------HHHHHHHHhccCCCCChhHH
Q psy3224 1054 ARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNA-----------GILWAEAIFLEPRPQRKTKS 1122 (1278)
Q Consensus 1054 A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~-----------~~~~~~~~~~~~~~~~~~~A 1122 (1278)
|+..|++++..+|+++.+|..++.++...|++++|...|++++...|++ ..+|..++.++...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 9999999999999999999999999999999999999999999999988 89999999999999999999
Q ss_pred HHHHHHh
Q psy3224 1123 VDALKKC 1129 (1278)
Q Consensus 1123 ~~~l~k~ 1129 (1278)
..++++.
T Consensus 350 ~~~~~~~ 356 (368)
T 1fch_A 350 GAADARD 356 (368)
T ss_dssp HHHHTTC
T ss_pred HHhHHHH
Confidence 8887754
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=1.8e-20 Score=229.90 Aligned_cols=369 Identities=11% Similarity=-0.081 Sum_probs=250.7
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCc
Q psy3224 667 PTDRQIWTTAAKLEEA----HGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQ 742 (1278)
Q Consensus 667 p~~~~~~~~la~~~~~----~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~ 742 (1278)
+.++.+++.++.++.. .+++++|...|+++++. +
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~-------------------------------------- 73 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----G-------------------------------------- 73 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T--------------------------------------
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----C--------------------------------------
Confidence 4567777777777777 67777777777777643 1
Q ss_pred cchHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCchH
Q psy3224 743 EDRKHTWMEDAESCAN----QGAYECARAIYAQALATFPSKKSIWLRAAYFEKN----HGTRESLETLLQKAVAHCPKSE 814 (1278)
Q Consensus 743 ~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~ 814 (1278)
...+++.+|.++.. .+++++|+.+|+++... .+..++..++.++.. .+++++|+..|+++.....
T Consensus 74 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~--- 146 (490)
T 2xm6_A 74 --YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR--- 146 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---
Confidence 12355556666665 56666666666666553 355666666666666 5666666666666655421
Q ss_pred HHHHhhcccchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHH
Q psy3224 815 VLWLMGAKSNKKSIWLRAAYFEKN----HGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWL----AGDVPAARGILSLA 886 (1278)
Q Consensus 815 ~~~~~~~~~~~~~~~l~~a~l~~~----~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~l~~a 886 (1278)
...++.++.++.. .+++++|+..|+++++. .++.+++.+|.+|.. .+++++|+..|+++
T Consensus 147 -----------~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a 213 (490)
T 2xm6_A 147 -----------DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKS 213 (490)
T ss_dssp -----------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 1134444444444 56677777777777664 456777777777776 67777777777777
Q ss_pred HHhCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHH
Q psy3224 887 FQANPNSEEIWLAAVKLESE----NNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESE----NNEYERARRLLA 958 (1278)
Q Consensus 887 l~~~p~~~~~~~~la~l~~~----~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~ 958 (1278)
.+. .++.++..++.++.. .+++++|+.+|+++. ...++.+++.++.++.. .+++++|+..|+
T Consensus 214 ~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~--------~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~ 283 (490)
T 2xm6_A 214 ATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA--------EQGNSIAQFRLGYILEQGLAGAKEPLKALEWYR 283 (490)
T ss_dssp HHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--------TTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHH
T ss_pred HHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
Confidence 764 346677777777775 677777777777765 33566777777777776 777777777777
Q ss_pred HHHHhCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHh
Q psy3224 959 KARASAPTPRVMIQSAKLEWCL-----DNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN---LLDKAHDTFSQAIKK 1030 (1278)
Q Consensus 959 ~al~~~p~~~~~~~la~~~~~~-----g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~ 1030 (1278)
++.+. .++..++.++.++... +++++|+.+|+++++. .++.+++.+|.++...| ++++|+.+|+++++.
T Consensus 284 ~a~~~-~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 284 KSAEQ-GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC
Confidence 77655 3456777777777766 7777777777777765 34667777777777655 677777777777766
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHCCC-
Q psy3224 1031 CPHSVPLWIMLANLEER----RKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIR----AGLKDIANTMMAKALQECPN- 1101 (1278)
Q Consensus 1031 ~p~~~~~~~~la~l~~~----~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~kal~~~P~- 1101 (1278)
.++.+++.++.++.. .+++++|+.+|++++.. .++.++..++.++.. .+++++|...|+++++..|+
T Consensus 361 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~ 436 (490)
T 2xm6_A 361 --GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNL 436 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCH
T ss_pred --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCC
Confidence 457777777777777 67777788888777765 356777777777777 67777888888877777744
Q ss_pred --cHHHHHHHHhccC
Q psy3224 1102 --AGILWAEAIFLEP 1114 (1278)
Q Consensus 1102 --~~~~~~~~~~~~~ 1114 (1278)
++.++..++.++.
T Consensus 437 ~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 437 FGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHHHHHTTSCH
T ss_pred cCCHHHHHHHHhcCH
Confidence 6666666666544
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=2e-23 Score=245.28 Aligned_cols=259 Identities=14% Similarity=0.108 Sum_probs=134.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Q psy3224 829 WLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENN 908 (1278)
Q Consensus 829 ~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g 908 (1278)
|+..+..+...|++++|+.+|++++..+|.+..+|..+|.++...|++++|+..|++++...|++..+|..++.++...|
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence 44555555555566666666666666556555556666666655666666666666666555555555555555555555
Q ss_pred cHHHHHHHHHHHHHhhhhhhcCCCcHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHHhCCC---HHHHHHHHH
Q psy3224 909 EYERARRLLAKARAQAGAFQANPNSEEIWLA----------AVKLESENNEYERARRLLAKARASAPT---PRVMIQSAK 975 (1278)
Q Consensus 909 ~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~----------la~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~la~ 975 (1278)
++++|+..|++++ ...|.+...+.. ++.++...|++++|+.+|++++...|. +.++..+|.
T Consensus 148 ~~~~A~~~~~~al------~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 148 HQQDACEALKNWI------KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp CHHHHHHHHHHHH------HHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHH------HhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 5555555555555 333433333322 244555555555555555555555443 345555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy3224 976 LEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKAR 1055 (1278)
Q Consensus 976 ~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~ 1055 (1278)
++...|++++|+.+|+++++..|+++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 1056 SVLEKGRLRNPN------------CAELWLAAIRVEIRAGLKDIANTMMA 1093 (1278)
Q Consensus 1056 ~~l~kal~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~ 1093 (1278)
..|++++.+.|+ +..+|..++.++...|+.+.+..+..
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 555555555443 13344555555555555544444433
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=1.1e-23 Score=247.41 Aligned_cols=276 Identities=17% Similarity=0.096 Sum_probs=244.3
Q ss_pred HHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q psy3224 847 TLLQKAVAHCPKSE----VLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARA 922 (1278)
Q Consensus 847 ~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~ 922 (1278)
..+..++...+.++ ..|+.+|..+...|++++|+.+|++++..+|++..+|..++.++...|++++|+..|++++
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al- 126 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL- 126 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-
Confidence 33444444444444 4599999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH-HHH----------HHHHHHHHHcCCHHHHHHHHH
Q psy3224 923 QAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTP-RVM----------IQSAKLEWCLDNLERALQLLD 991 (1278)
Q Consensus 923 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~----------~~la~~~~~~g~~~~A~~~l~ 991 (1278)
..+|.+..+|..++.++...|++++|+..|++++...|+. ..+ ..++.++...|++++|+.+|+
T Consensus 127 -----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 127 -----ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL 201 (365)
T ss_dssp -----HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHH
T ss_pred -----hcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 7899999999999999999999999999999999998862 333 345889999999999999999
Q ss_pred HHHHhCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy3224 992 EAIKVFPD--FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCA 1069 (1278)
Q Consensus 992 ~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~ 1069 (1278)
+++...|+ ++.++..+|.++...|++++|+.+|+++++.+|+++.+|..+|.++...|++++|+..|++++..+|+++
T Consensus 202 ~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 281 (365)
T 4eqf_A 202 EAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFI 281 (365)
T ss_dssp HHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch
Confidence 99999999 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------cHHHHHHHHhccCCCCChhHHHHHHHH
Q psy3224 1070 ELWLAAIRVEIRAGLKDIANTMMAKALQECPN------------AGILWAEAIFLEPRPQRKTKSVDALKK 1128 (1278)
Q Consensus 1070 ~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~------------~~~~~~~~~~~~~~~~~~~~A~~~l~k 1128 (1278)
.+|..++.++...|++++|+..|+++++..|+ +..+|..++..+...|+.+.+..+.++
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999999999999999999999987 357889999998889999888777665
No 27
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.91 E-value=1.2e-18 Score=221.13 Aligned_cols=652 Identities=13% Similarity=0.085 Sum_probs=413.8
Q ss_pred chHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHH-H--------HHHHHHHH-hcCCCHHHHHHHHhcCCchH-
Q psy3224 495 NDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAA-R--------NLIMKGCE-ENQTSEDLWLEAARLQPVDT- 563 (1278)
Q Consensus 495 g~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A-~--------~~l~~al~-~~P~s~~lwl~~a~L~~~~~- 563 (1278)
+++.-=...++.-+...-.++.++..+|.++...++-.+. + .++.+-|+ .+|.- +++.|-+=.-+++
T Consensus 853 nrLkll~p~LE~~~~~g~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~l--a~iay~~g~~d~el 930 (1630)
T 1xi4_A 853 NRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHL--ACVAYERGQCDLEL 930 (1630)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcch--HHHHhcccCCcHHH
Confidence 3444444556666777777888999999998755443322 1 22333333 33332 2222222110111
Q ss_pred --------H-HHHHHHHHHhCCCCHHHHHHHHHchhhHHHHHHHHHHHH------HhCCCCH-HHHHHHHhcCCHHHHHH
Q psy3224 564 --------A-RAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKAL------EHIPNSV-RLWKAAVELEDPEDARI 627 (1278)
Q Consensus 564 --------A-~~~l~kaL~~~P~s~~lw~~~~~le~~~~~A~~ll~rAl------e~~P~s~-~Lw~al~~l~~~e~A~~ 627 (1278)
- +..-+-.++. .++.+|.....-.. +..+.+....+ ..+|..+ ..-.+|+..+.+.+|+.
T Consensus 931 i~vt~~n~l~k~~arylv~r--~d~~lW~~vl~~~n--~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~Eaie 1006 (1630)
T 1xi4_A 931 INVCNENSLFKSLSRYLVRR--KDPELWGSVLLESN--PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIE 1006 (1630)
T ss_pred HHHHhcchhHHHHHHHHHHh--cCHHHHHHHhcCCc--HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHH
Confidence 0 1122223333 67889988775333 22233333321 2455555 45678899999999999
Q ss_pred HHHHHHHhCCC----CHHHHHH----HHHh--cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 628 LLSRAVECCPT----SVELWLA----LARL--ETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRAL 697 (1278)
Q Consensus 628 ~l~kal~~~P~----~~~~w~~----la~l--~~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~il~~al 697 (1278)
+|++++ ..|+ +..+-.. .++. ++..+.+..++... .-..|.++...|.+++|..+|+++.
T Consensus 1007 LLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d---------~~eIA~Iai~lglyEEAf~IYkKa~ 1076 (1630)
T 1xi4_A 1007 LLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYD---------APDIANIAISNELFEEAFAIFRKFD 1076 (1630)
T ss_pred HHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhcc---------HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 999999 5554 2222222 2222 22333332222111 2347899999999999999999974
Q ss_pred HhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 698 SSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFP 777 (1278)
Q Consensus 698 ~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 777 (1278)
.. ...........++++.|..+++.+ +...+|..+|+.+...|++++|+..|.++
T Consensus 1077 ~~------------~~A~~VLie~i~nldrAiE~Aerv--------n~p~vWsqLAKAql~~G~~kEAIdsYiKA----- 1131 (1630)
T 1xi4_A 1077 VN------------TSAVQVLIEHIGNLDRAYEFAERC--------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----- 1131 (1630)
T ss_pred CH------------HHHHHHHHHHHhhHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----
Confidence 21 001111233667788888777755 22679999999999999999999999886
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy3224 778 SKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCP 857 (1278)
Q Consensus 778 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P 857 (1278)
++...|...+.++.+.|++++|++.|..+.+..+.... -...+..+.+.+++++ +..| + ..|
T Consensus 1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I-------------dt~LafaYAKl~rlee-le~f---I-~~~ 1193 (1630)
T 1xi4_A 1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV-------------ETELIFALAKTNRLAE-LEEF---I-NGP 1193 (1630)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc-------------cHHHHHHHHhhcCHHH-HHHH---H-hCC
Confidence 78899999999999999999999999999988765431 1123444455566664 3333 2 244
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHH
Q psy3224 858 KSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIW 937 (1278)
Q Consensus 858 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~ 937 (1278)
+. ..|..+|..+...|++++|..+|.++ ..|..++.++.++|++++|++.++++. +..+|
T Consensus 1194 n~-ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~-----------n~~aW 1253 (1630)
T 1xi4_A 1194 NN-AHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN-----------STRTW 1253 (1630)
T ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----------CHHHH
Confidence 44 55778999999999999999999996 479999999999999999999999873 56899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH--cC
Q psy3224 938 LAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQ--KN 1015 (1278)
Q Consensus 938 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~--~g 1015 (1278)
...+..+...|++..|..+... +.-++..+..++.+|...|.+++|+.+++.++.++|.+..++..++.++.+ .+
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~---Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH---IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh---hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence 9999999999999999998764 333455566888899999999999999999999999999999888888865 45
Q ss_pred CHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHH
Q psy3224 1016 LLDKAHDTFSQAIKKCP-----HSVPLWIMLANLEERRKMLIKARSVLEKGRLR------------NPNCAELWLAAIRV 1078 (1278)
Q Consensus 1016 ~~~~A~~~~~~al~~~p-----~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~------------~p~~~~~~~~l~~~ 1078 (1278)
+..++.+.|...+...| .+..+|..+..+|.+.|++++|+..+-..... .+.++++++..+.+
T Consensus 1331 klmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~F 1410 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQF 1410 (1630)
T ss_pred HHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHH
Confidence 77788888888877666 67889999999999999999999544333222 57888999998888
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHh--ccCcchhhhhhhhhhhhcccccccccC
Q psy3224 1079 EIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKC--EHDPHVLLAVSKLFWCENKNQKCHRSG 1156 (1278)
Q Consensus 1079 ~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~--~~~p~~~~~~~~l~~~~~~~~~A~~~~ 1156 (1278)
|.. ....++..+..++.-.=++.. .+.++.+.+...-+...++.+ .++..+-.+++.++-.+..+.. ++-.
T Consensus 1411 yl~--~~P~~lndLl~~l~~rlD~~R----~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~-Lr~s 1483 (1630)
T 1xi4_A 1411 YLE--FKPLLLNDLLMVLSPRLDHTR----AVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQA-LRTS 1483 (1630)
T ss_pred HHh--hChHHHHHHHHHhhhcCChHH----HHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHH-HHHH
Confidence 874 444555555555532222221 222333444444444444444 2222222222222221111000 0000
Q ss_pred c--cccccccchhhhhhhhCCCCHHHH--HHHH-HHHHhcCCHHHHHHHHHHH------Hhh--CCCChhHHHHHHHHHH
Q psy3224 1157 S--RRCMGVKTKSVDALKKCEHDPHVL--LAVS-KLFWCENKNQKCREWFNRT------VKI--DPDLGDAWAYFYKFEI 1223 (1278)
Q Consensus 1157 ~--~~~~~~~~~a~~~l~~~p~~~~~l--~~lg-~~~~~~g~~~~A~~~~~ka------l~~--~P~~~d~~~~l~~~~~ 1223 (1278)
. ...++... -.+.|+ ..+.+ -.+| .+|.+.++|.+|++.+.+. ++. .+.+.+.-..+..+..
T Consensus 1484 i~~~~nfd~~~-La~~le----kheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l~~dAm~~a~~S~d~e~~e~ll~~F~ 1558 (1630)
T 1xi4_A 1484 IDAYDNFDNIS-LAQRLE----KHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESKDTELAEELLQWFL 1558 (1630)
T ss_pred HhhccCcCHHH-HHHHhh----hhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0 00000000 000111 12222 4455 5555559999999887653 331 2334444444555555
Q ss_pred HhCCHHHHHHHHHHHHH
Q psy3224 1224 INGTEETQAEVKKRCLA 1240 (1278)
Q Consensus 1224 ~~G~~~~A~~~l~ka~~ 1240 (1278)
..|+.+-...++-.|..
T Consensus 1559 ~~~~~E~f~a~Ly~cy~ 1575 (1630)
T 1xi4_A 1559 QEEKRECFGACLFTCYD 1575 (1630)
T ss_pred hcCChhHHHHHHHHHhc
Confidence 55665555555555555
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=2.1e-22 Score=231.74 Aligned_cols=267 Identities=16% Similarity=0.108 Sum_probs=208.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q psy3224 828 IWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESEN 907 (1278)
Q Consensus 828 ~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~ 907 (1278)
.|+..+..+...|++++|+.+|+++++.+|.+..+|..+|.++...|++++|+..|+++++..|.+..++..++.++...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 46677777788888999999999999988988888888899998899999999999999998888888888889888888
Q ss_pred CcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHhCCC-HHHHH
Q psy3224 908 NEYERARRLLAKARAQAGAFQANPNSEEIWLAA--------------VK-LESENNEYERARRLLAKARASAPT-PRVMI 971 (1278)
Q Consensus 908 g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~l--------------a~-~~~~~g~~~~A~~~l~~al~~~p~-~~~~~ 971 (1278)
|++++|+..+++++ ...|.+...+..+ +. ++...|++++|+..+++++...|. ..++.
T Consensus 103 ~~~~~A~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 176 (327)
T 3cv0_A 103 HNANAALASLRAWL------LSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHA 176 (327)
T ss_dssp TCHHHHHHHHHHHH------HTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CCHHHHHHHHHHHH------HhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHH
Confidence 89999988888887 6677776666655 44 466677777777777777777764 57777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy3224 972 QSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKML 1051 (1278)
Q Consensus 972 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~ 1051 (1278)
.++.++...|++++|+.++++++...|+++.++..+|.++...|++++|+..|+++++..|.+..+|..++.++...|++
T Consensus 177 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 177 SLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q psy3224 1052 IKARSVLEKGRLRNPN------------CAELWLAAIRVEIRAGLKDIANTMMAKALQECP 1100 (1278)
Q Consensus 1052 ~~A~~~l~kal~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P 1100 (1278)
++|+.+|++++...|+ ++.+|..++.++...|++++|..++++++...|
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 7777777777777777 667777777777777777777777776666554
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=5.4e-22 Score=228.28 Aligned_cols=270 Identities=16% Similarity=0.122 Sum_probs=215.5
Q ss_pred hHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccc
Q psy3224 745 RKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSN 824 (1278)
Q Consensus 745 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~ 824 (1278)
....|+.+|..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|.
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~------------------------ 75 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAI------------------------ 75 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH------------------------
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH------------------------
Confidence 35678999999999999999999999999999999999999999988888887754
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH----
Q psy3224 825 KKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAA---- 900 (1278)
Q Consensus 825 ~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~l---- 900 (1278)
..++++++.+|.+..++..+|.++...|++++|+..|++++...|.+..++..+
T Consensus 76 ----------------------~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (327)
T 3cv0_A 76 ----------------------IALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133 (327)
T ss_dssp ----------------------HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------
T ss_pred ----------------------HHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH
Confidence 445555555566666666666666666666666666666666666655555444
Q ss_pred ----------HH-HHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HH
Q psy3224 901 ----------VK-LESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PR 968 (1278)
Q Consensus 901 ----------a~-l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~ 968 (1278)
+. ++...|++++|+.++++++ ...|.+..++..++.++...|++++|+..+++++...|+ +.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 207 (327)
T 3cv0_A 134 VDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL------EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ 207 (327)
T ss_dssp ------------CCTTSHHHHHHHHHHHHHHH------HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH------hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 44 5667788888888888877 667888888888888888888888888888888888875 67
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHH
Q psy3224 969 VMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH------------SVP 1036 (1278)
Q Consensus 969 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------~~~ 1036 (1278)
+|..++.++...|++++|+.+|+++++..|+++.++..+|.++...|++++|+..|++++...|. +..
T Consensus 208 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 287 (327)
T 3cv0_A 208 LWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRS 287 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHH
Confidence 88888888888888888888898888888888888899999999999999999999999988888 688
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 1037 LWIMLANLEERRKMLIKARSVLEKGRLRNP 1066 (1278)
Q Consensus 1037 ~~~~la~l~~~~g~~~~A~~~l~kal~~~p 1066 (1278)
+|..++.++...|++++|...+++++...|
T Consensus 288 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 288 MWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 888889999999999999888887776544
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.90 E-value=2.8e-22 Score=235.32 Aligned_cols=255 Identities=11% Similarity=0.086 Sum_probs=227.4
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCChHHHHH
Q psy3224 928 QANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDN-LERALQLLDEAIKVFPDFAKLWM 1005 (1278)
Q Consensus 928 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~-~~~A~~~l~~al~~~p~~~~~~~ 1005 (1278)
..+|.+..+|..++.++...|++++|+..|++++..+|+ ..+|..+|.++...|+ +++|+.+|++++.++|++..+|.
T Consensus 91 ~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~ 170 (382)
T 2h6f_A 91 IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH 170 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 567788888999999999999999999999999999986 6899999999999996 99999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCC
Q psy3224 1006 MKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIR-AGL 1084 (1278)
Q Consensus 1006 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~-~g~ 1084 (1278)
.+|.++...|++++|+.+|++++.++|++..+|..+|.++...|++++|+..|++++.++|++..+|..++.++.. .|.
T Consensus 171 ~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 171 HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998 555
Q ss_pred HHHH-----HHHHHHHHHHCCCcHHHHHHHHhccCCCC--ChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCc
Q psy3224 1085 KDIA-----NTMMAKALQECPNAGILWAEAIFLEPRPQ--RKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGS 1157 (1278)
Q Consensus 1085 ~~~A-----~~~~~kal~~~P~~~~~~~~~~~~~~~~~--~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~ 1157 (1278)
.++| +..|.+++..+|++..+|..++.++...| ++.+|++.++++.
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~--------------------------- 303 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQ--------------------------- 303 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHT---------------------------
T ss_pred chHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhc---------------------------
Confidence 4777 58999999999999999999998888777 5788877776552
Q ss_pred cccccccchhhhhhhhCCCCHHHHHHHHHHHHhcC--------C-HHHHHHHHHHH-HhhCCCChhHHHHHHHHHHH
Q psy3224 1158 RRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCEN--------K-NQKCREWFNRT-VKIDPDLGDAWAYFYKFEII 1224 (1278)
Q Consensus 1158 ~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g--------~-~~~A~~~~~ka-l~~~P~~~d~~~~l~~~~~~ 1224 (1278)
..|+++.++..+|.+|...+ + +++|+++|+++ ++++|.....|.+++..+..
T Consensus 304 ---------------~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 304 ---------------PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp ---------------TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred ---------------cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 34556679999999998874 3 59999999999 99999999999999877664
No 31
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=4.6e-18 Score=215.93 Aligned_cols=451 Identities=14% Similarity=0.042 Sum_probs=341.6
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHH------HhCCCCHHHH-HHHHHhcCHHHHHHHHHHHHHhCCC----CHHHHHHH
Q psy3224 608 NSVRLWKAAVELEDPEDARILLSRAV------ECCPTSVELW-LALARLETYENARKVLNKARENIPT----DRQIWTTA 676 (1278)
Q Consensus 608 ~s~~Lw~al~~l~~~e~A~~~l~kal------~~~P~~~~~w-~~la~l~~~~~A~~~l~~al~~~p~----~~~~~~~l 676 (1278)
.+.+||...+.-.+ +.=+.+.+..+ ..+|..+..- ..++..+.+.+|+.+|++++ ..|. +...-..+
T Consensus 951 ~d~~lW~~vl~~~n-~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKiv-l~~s~fs~n~~LqnlL 1028 (1630)
T 1xi4_A 951 KDPELWGSVLLESN-PYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIV-LDNSVFSEHRNLQNLL 1028 (1630)
T ss_pred cCHHHHHHHhcCCc-HHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHH-cCCCcccccHHHHHHH
Confidence 57789987665443 12222333322 2345554443 45677899999999999999 4443 34444445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHH-HHHH
Q psy3224 677 AKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWME-DAES 755 (1278)
Q Consensus 677 a~~~~~~g~~~~A~~il~~al~~~~~~~~~~~~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~-la~~ 755 (1278)
+....+. +..+...++.+.-.. ..-..|..+...|.+++|..+|+.+- .+.. +...
T Consensus 1029 i~tAIka-D~~Rv~eyI~kLd~~-----------d~~eIA~Iai~lglyEEAf~IYkKa~-----------~~~~A~~VL 1085 (1630)
T 1xi4_A 1029 ILTAIKA-DRTRVMEYINRLDNY-----------DAPDIANIAISNELFEEAFAIFRKFD-----------VNTSAVQVL 1085 (1630)
T ss_pred HHHHHHh-ChhhHHHHHHHhhhc-----------cHHHHHHHHHhCCCHHHHHHHHHHcC-----------CHHHHHHHH
Confidence 5554444 334444444433211 12347889999999999999999972 1222 2233
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHH
Q psy3224 756 CANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYF 835 (1278)
Q Consensus 756 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l 835 (1278)
+...+++++|.++++++ +.+.+|..+|..+...|++++|+..|.++ ++ ...|...+..
T Consensus 1086 ie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD------------~say~eVa~~ 1143 (1630)
T 1xi4_A 1086 IEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DD------------PSSYMEVVQA 1143 (1630)
T ss_pred HHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CC------------hHHHHHHHHH
Confidence 34778999999999866 67899999999999999999999999885 22 3357888999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHH
Q psy3224 836 EKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARR 915 (1278)
Q Consensus 836 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~ 915 (1278)
....|++++|+.+|..+.+..+.. .+...+|.+|.+.+++++ .+.|. ..+ +...|..+|..+...|++++|..
T Consensus 1144 ~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rlee-le~fI----~~~-n~ad~~~iGd~le~eg~YeeA~~ 1216 (1630)
T 1xi4_A 1144 ANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLAE-LEEFI----NGP-NNAHIQQVGDRCYDEKMYDAAKL 1216 (1630)
T ss_pred HHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHH-HHHHH----hCC-CHHHHHHHHHHHHhcCCHHHHHH
Confidence 999999999999999999987543 234458888888898885 44442 234 45677789999999999999999
Q ss_pred HHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 916 LLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIK 995 (1278)
Q Consensus 916 ~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 995 (1278)
+|.++ ..|..++.++.+.|++++|++.+.++ .+..+|...+..+...|++..|..+... +.
T Consensus 1217 ~Y~kA--------------~ny~rLA~tLvkLge~q~AIEaarKA----~n~~aWkev~~acve~~Ef~LA~~cgl~-Ii 1277 (1630)
T 1xi4_A 1217 LYNNV--------------SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IV 1277 (1630)
T ss_pred HHHhh--------------hHHHHHHHHHHHhCCHHHHHHHHHHh----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hh
Confidence 99985 37999999999999999999999998 4569999999999999999999998874 44
Q ss_pred hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC-----CC
Q psy3224 996 VFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER--RKMLIKARSVLEKGRLRNP-----NC 1068 (1278)
Q Consensus 996 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~--~g~~~~A~~~l~kal~~~p-----~~ 1068 (1278)
.+ ++.+..++..|...|.+++|+.+++.++.++|.+...|..++.++.+ -++..++.+.|...+.+.| .+
T Consensus 1278 v~---~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~ 1354 (1630)
T 1xi4_A 1278 VH---ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQ 1354 (1630)
T ss_pred cC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHH
Confidence 44 45556889999999999999999999999999999999888888875 5677889999998888877 78
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------CCCcHHHHHHHHhccCCCC---------------ChhH
Q psy3224 1069 AELWLAAIRVEIRAGLKDIANTMMAKALQE------------CPNAGILWAEAIFLEPRPQ---------------RKTK 1121 (1278)
Q Consensus 1069 ~~~~~~l~~~~~~~g~~~~A~~~~~kal~~------------~P~~~~~~~~~~~~~~~~~---------------~~~~ 1121 (1278)
..+|..+..+|.+.|+++.|...+-..... .+.++++++..+.+|...+ ++++
T Consensus 1355 ~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R 1434 (1630)
T 1xi4_A 1355 AHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTR 1434 (1630)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHH
Confidence 889999999999999999999544433322 5678899999988887655 6666
Q ss_pred HHHHHHHhccCcc
Q psy3224 1122 SVDALKKCEHDPH 1134 (1278)
Q Consensus 1122 A~~~l~k~~~~p~ 1134 (1278)
++..|.+..+-|.
T Consensus 1435 ~V~l~~~~~~l~l 1447 (1630)
T 1xi4_A 1435 AVNYFSKVKQLPL 1447 (1630)
T ss_pred HHHHHHHcCChHH
Confidence 6666666554444
No 32
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.89 E-value=3.7e-22 Score=234.27 Aligned_cols=255 Identities=11% Similarity=0.029 Sum_probs=235.4
Q ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHhhhhhhcC
Q psy3224 852 AVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNE-YERARRLLAKARAQAGAFQAN 930 (1278)
Q Consensus 852 al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~-~~~A~~~l~~al~~~~~l~~~ 930 (1278)
++..+|.+..+|..++.++...|++++|+..|++++.++|++..+|..++.++...|+ +++|+..|++++ ..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al------~l~ 162 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAII------EEQ 162 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH------HHC
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH------HHC
Confidence 4567788889999999999999999999999999999999999999999999999996 999999999998 889
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Q psy3224 931 PNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQ 1009 (1278)
Q Consensus 931 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 1009 (1278)
|++..+|..++.++...|++++|+..|++++..+|+ ..+|..+|.++...|++++|+.+|+++++++|++..+|..+|.
T Consensus 163 P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~ 242 (382)
T 2h6f_A 163 PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYF 242 (382)
T ss_dssp TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999999999999999999996 7999999999999999999999999999999999999999999
Q ss_pred HHHH-cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 1010 IEEQ-KNLLDKA-----HDTFSQAIKKCPHSVPLWIMLANLEERRK--MLIKARSVLEKGRLRNPNCAELWLAAIRVEIR 1081 (1278)
Q Consensus 1010 ~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~l~~~~g--~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~ 1081 (1278)
++.. .|..++| +.+|.+++.++|++..+|..++.++...| ++++|+..+.++ ..+|+++.++..++.++..
T Consensus 243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 243 VISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp HHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHH
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 9999 5555777 59999999999999999999999999888 689999999998 9999999999999999988
Q ss_pred cC---------CHHHHHHHHHHH-HHHCCCcHHHHHHHHhcc
Q psy3224 1082 AG---------LKDIANTMMAKA-LQECPNAGILWAEAIFLE 1113 (1278)
Q Consensus 1082 ~g---------~~~~A~~~~~ka-l~~~P~~~~~~~~~~~~~ 1113 (1278)
.| .+++|+.+|+++ ++.+|.....|..++..+
T Consensus 322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 322 MLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 74 258999999999 999999999999777654
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.7e-20 Score=206.00 Aligned_cols=240 Identities=15% Similarity=0.054 Sum_probs=214.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCc-----
Q psy3224 859 SEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNS----- 933 (1278)
Q Consensus 859 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~----- 933 (1278)
....+..+|.++...|++++|+.+|+++++.. .++.++..++.++...|++++|+..+++++. ..|.+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~ 76 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVE------QGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH------hCcccccchH
Confidence 35678888888888888888888888888888 7788888888888888888888888888873 33433
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q psy3224 934 --EEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIE 1011 (1278)
Q Consensus 934 --~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 1011 (1278)
..++..++.++...|++++|+..|++++...|... ++...|++++|+..+++++...|.++.++..+|.++
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-------ILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhH-------HHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 68888999999999999999999999999988854 455667789999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 1012 EQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTM 1091 (1278)
Q Consensus 1012 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 1091 (1278)
...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|++++..+|+++.+|..++.++...|++++|...
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHC------CCcHHHHHHHHhc
Q psy3224 1092 MAKALQEC------PNAGILWAEAIFL 1112 (1278)
Q Consensus 1092 ~~kal~~~------P~~~~~~~~~~~~ 1112 (1278)
|+++++.. |++..++..+..+
T Consensus 230 ~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 230 LDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 99999999 8888888766554
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.86 E-value=9.7e-21 Score=211.99 Aligned_cols=257 Identities=14% Similarity=0.066 Sum_probs=167.3
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----HHHHHH
Q psy3224 897 WLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT----PRVMIQ 972 (1278)
Q Consensus 897 ~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~ 972 (1278)
++.+|.++...|++++|+..|++++ ..+|.+..+|..++.++...|++++|+..|++++...++ ..+|..
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l------~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLE------AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHH------HTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH------HhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 3344444444444444444444443 334444444444444444555555555555555552222 345677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy3224 973 SAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLI 1052 (1278)
Q Consensus 973 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~ 1052 (1278)
+|.++...|++++|+.+|++++..+|+++.+|..+|.++...|++++|+.+|+++++.+|.++.+|..+|......++++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777774444445777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHh
Q psy3224 1053 KARSVLEKGRLRNPNCAELWLAAIRVEIRAGL---KDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKC 1129 (1278)
Q Consensus 1053 ~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~ 1129 (1278)
+|+..|++++..+|++...+..++.++...|+ +++|+..|+++++.....+..-.
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------------------- 217 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK---------------------- 217 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGH----------------------
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccch----------------------
Confidence 77777777777777777777777777777777 66677777777665421110000
Q ss_pred ccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q psy3224 1130 EHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDP 1209 (1278)
Q Consensus 1130 ~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P 1209 (1278)
.. ...++..+|.+|...|++++|+.+|+++++++|
T Consensus 218 ----------~~-----------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 218 ----------DE-----------------------------------LIEANEYIAYYYTINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp ----------HH-----------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ----------HH-----------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 00 012788899999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHhC
Q psy3224 1210 DLGDAWAYFYKFEIING 1226 (1278)
Q Consensus 1210 ~~~d~~~~l~~~~~~~G 1226 (1278)
+++.++..+..+....+
T Consensus 253 ~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 253 TNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp TCHHHHHHHC-------
T ss_pred cHHHHHHHhhhhhcccc
Confidence 99999998877665443
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.86 E-value=2.3e-20 Score=208.86 Aligned_cols=251 Identities=13% Similarity=-0.030 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCC-cHHHHH
Q psy3224 860 EVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPN-SEEIWL 938 (1278)
Q Consensus 860 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~-~~~~~~ 938 (1278)
+..++.+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..+++++.. ..+|. ...+|.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~ 78 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK----VNATKAKSADFE 78 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT----SCTTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----cCchhHHHHHHH
Confidence 3456777777778888888888888888888877777777888888888888888888877620 11222 244577
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCH
Q psy3224 939 AAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLL 1017 (1278)
Q Consensus 939 ~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 1017 (1278)
.+|.++...|++++|+..|++++...|. +.+|..+|.++...|++++|+.+|++++...|.++.+|..+|......+++
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888775 578888888888888888888888888888888888888888444445688
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHcCCHH
Q psy3224 1018 DKAHDTFSQAIKKCPHSVPLWIMLANLEERRKM---LIKARSVLEKGRLRN---PNC-----AELWLAAIRVEIRAGLKD 1086 (1278)
Q Consensus 1018 ~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~---~~~A~~~l~kal~~~---p~~-----~~~~~~l~~~~~~~g~~~ 1086 (1278)
++|+..|+++++.+|++..++..++.++...++ +++|+..|++++... |+. ..++..++.++...|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 888888888888888888888888888888888 888888888888875 442 256778888888889999
Q ss_pred HHHHHHHHHHHHCCCcHHHHHHHHhccC
Q psy3224 1087 IANTMMAKALQECPNAGILWAEAIFLEP 1114 (1278)
Q Consensus 1087 ~A~~~~~kal~~~P~~~~~~~~~~~~~~ 1114 (1278)
+|+..|+++++.+|+++.++..+..+..
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~l~~~~~ 266 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDGLKMKLE 266 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHC----
T ss_pred HHHHHHHHHHhcCccHHHHHHHhhhhhc
Confidence 9999999999999988888877666543
No 36
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=4.2e-20 Score=211.74 Aligned_cols=238 Identities=15% Similarity=0.211 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------cCCH-------HHHHHHH
Q psy3224 826 KSIWLRAAYFEKNH----GTR----ESLETLLQKAVAHCPKSEVLWLMGAKSKWL-------AGDV-------PAARGIL 883 (1278)
Q Consensus 826 ~~~~l~~a~l~~~~----g~~----~~A~~~~~~al~~~P~~~~~~~~la~~~~~-------~g~~-------~~A~~~l 883 (1278)
..+|..++.++... ++. ++|+.+|++++..+|.++.+|+.+|.++.. .|++ ++|+.+|
T Consensus 8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~ 87 (308)
T 2ond_A 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY 87 (308)
T ss_dssp HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence 56799999888775 233 688899999999999999999999998874 4775 7888888
Q ss_pred HHHHH-hCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 884 SLAFQ-ANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEE-IWLAAVKLESENNEYERARRLLAKAR 961 (1278)
Q Consensus 884 ~~al~-~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~-~~~~la~~~~~~g~~~~A~~~l~~al 961 (1278)
++++. ..|++..+|..++.++...|++++|+.+|++++ ...|.++. +|..++.++.+.|++++|+.+|++++
T Consensus 88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al------~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL------AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHH------hccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 88888 588888888888888888888888888888877 66777765 77777777777777777777777777
Q ss_pred HhCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-CCH
Q psy3224 962 ASAPT-PRVMIQSAKLEWC-LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKK---CP-HSV 1035 (1278)
Q Consensus 962 ~~~p~-~~~~~~la~~~~~-~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~~ 1035 (1278)
+..|. ..+|...+.+... .|++++|+.+|+++++.+|+++.+|..++.++...|++++|+.+|++++.. .| .+.
T Consensus 162 ~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 162 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 76654 4566555555433 577777777777777777777777777777777777777777777777774 33 356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy3224 1036 PLWIMLANLEERRKMLIKARSVLEKGRLRNPNCA 1069 (1278)
Q Consensus 1036 ~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~ 1069 (1278)
.+|..++.++...|+++.|..+++++++..|++.
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 6777777777777777777777777777777644
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.85 E-value=1.5e-19 Score=204.93 Aligned_cols=260 Identities=11% Similarity=0.043 Sum_probs=231.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHH
Q psy3224 835 FEKNHGTRESLETLLQKAVAHCPKS-EVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERA 913 (1278)
Q Consensus 835 l~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A 913 (1278)
.....|++..|+..++++....|.+ .+..+.++++|...|+++.|+..++. ..|....++..++.++...++.++|
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3356799999999999887777776 46778889999999999999988766 2555677788899999999999999
Q ss_pred HHHHHHHHHhhhhhhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 914 RRLLAKARAQAGAFQA--NPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLD 991 (1278)
Q Consensus 914 ~~~l~~al~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~ 991 (1278)
+..+++++ .. +|+++.+++.+|.++...|++++|+..|++ ..+..++..++.++...|++++|+..|+
T Consensus 85 ~~~l~~ll------~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 85 VAELDREM------SRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHH------HSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHH------hcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999986 43 699999999999999999999999999998 3467999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy3224 992 EAIKVFPDFAKLWMMKG--QIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCA 1069 (1278)
Q Consensus 992 ~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~ 1069 (1278)
++++.+|++....+..+ .++...|++++|..+|++++..+|+++.+|..+|.++...|++++|...|++++..+|+++
T Consensus 155 ~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 155 KMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 99999999865554433 4455668999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHH-HHHHHHHHHHHCCCcHHHHH
Q psy3224 1070 ELWLAAIRVEIRAGLKDI-ANTMMAKALQECPNAGILWA 1107 (1278)
Q Consensus 1070 ~~~~~l~~~~~~~g~~~~-A~~~~~kal~~~P~~~~~~~ 1107 (1278)
.+|..++.++...|+..+ +..+++++++..|+++.+..
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999976 57899999999999997765
No 38
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.85 E-value=1e-18 Score=212.36 Aligned_cols=383 Identities=12% Similarity=0.108 Sum_probs=223.6
Q ss_pred ccccc-hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHhcC-----CchHH
Q psy3224 491 GGDIN-DIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARLQ-----PVDTA 564 (1278)
Q Consensus 491 ~~~~g-~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~L~-----~~~~A 564 (1278)
+++.| ++..||.+|+.++..-|. |+++.+..+|++++..+| |+++|+.++... ..+..
T Consensus 4 e~~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 4 EEKMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp --------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CT
T ss_pred HHHcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHH
Confidence 56778 499999999999999987 689999999999999999 999999888743 22345
Q ss_pred HHHHHHHHHh---CCCCHHHHHHHHHchh-------hHHHHHHHHHHHHHhCCCCH-HHHHHHHhcC---CHHHHHHHHH
Q psy3224 565 RAVIAQAVRH---IPTSVRIWIKAADLET-------ETKAKRRVYRKALEHIPNSV-RLWKAAVELE---DPEDARILLS 630 (1278)
Q Consensus 565 ~~~l~kaL~~---~P~s~~lw~~~~~le~-------~~~~A~~ll~rAle~~P~s~-~Lw~al~~l~---~~e~A~~~l~ 630 (1278)
+.+|+.++.. +|.+..+|..++.++. ..+.++.+|++|+..-+... .+|..|..++ +...+.+++.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHH
Confidence 6788888886 5788899999998743 35678889999988432333 6777776654 2222322222
Q ss_pred HHHHhCCCCHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhhhhCCcccc
Q psy3224 631 RAVECCPTSVELWLALARLETYENARKVLNKARENIPT-DRQIWTTAAKLEEAHGN-NAMVDKIIDRALSSLSANGVEIN 708 (1278)
Q Consensus 631 kal~~~P~~~~~w~~la~l~~~~~A~~~l~~al~~~p~-~~~~~~~la~~~~~~g~-~~~A~~il~~al~~~~~~~~~~~ 708 (1278)
.. ...+..|+.+|..+....+. +...|..++......+. ....
T Consensus 148 ~~----------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~------------------- 192 (493)
T 2uy1_A 148 DT----------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGR------------------- 192 (493)
T ss_dssp HH----------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHH-------------------
T ss_pred HH----------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcch-------------------
Confidence 21 13455555555555543322 44556655555443210 0000
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 709 REHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAY 788 (1278)
Q Consensus 709 ~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 788 (1278)
+....+..+|+.++...+.. ..+|+.++..+...|+.+.|+.+|++++.. |.+..+|+.++.
T Consensus 193 --------------~~~~Rv~~~ye~al~~~p~~---~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~ 254 (493)
T 2uy1_A 193 --------------PHESRMHFIHNYILDSFYYA---EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGL 254 (493)
T ss_dssp --------------HHHHHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHH
T ss_pred --------------hhHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHh
Confidence 00112233444444433322 568999999999999999999999999999 998888887766
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC---CchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q psy3224 789 FEKNHGTRESLETLLQKAVAHC---PKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLM 865 (1278)
Q Consensus 789 ~~~~~g~~~~A~~~l~~al~~~---p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~ 865 (1278)
+.. .++. ++++.+.. ...... .........+|+.++.++...++.+.|+.+|+++ ...+....+|..
T Consensus 255 ~~e----~~~~---~~~l~~~~~~~~~~~~~--~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~ 324 (493)
T 2uy1_A 255 VMD----EEAV---YGDLKRKYSMGEAESAE--KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIY 324 (493)
T ss_dssp HTT----CTHH---HHHHHHHTC------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHH
T ss_pred hcc----hhHH---HHHHHHHHHhhccchhh--hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHH
Confidence 521 1111 22221110 000000 0000011345666666665556666666666666 222224455555
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHH
Q psy3224 866 GAKSKWLAG-DVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLE 944 (1278)
Q Consensus 866 la~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~ 944 (1278)
.|.+....+ +.+.|+.+|+.+++..|+++..|..++.++...|+.+.|+.+|+++ +.+..+|..+..+.
T Consensus 325 ~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----------~k~~~lw~~~~~fE 394 (493)
T 2uy1_A 325 CAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----------EKTSRMWDSMIEYE 394 (493)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----------CCBHHHHHHHHHHH
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 555555444 4666666666666666666666666666666666666666666553 23455555555555
Q ss_pred HHcCCHHHHHHHHHHHHH
Q psy3224 945 SENNEYERARRLLAKARA 962 (1278)
Q Consensus 945 ~~~g~~~~A~~~l~~al~ 962 (1278)
...|+.+.+..++++++.
T Consensus 395 ~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 395 FMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHSCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 555555555555555543
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=2.3e-19 Score=198.39 Aligned_cols=238 Identities=13% Similarity=0.052 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q psy3224 826 KSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNS-------EEIWL 898 (1278)
Q Consensus 826 ~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-------~~~~~ 898 (1278)
...|...+..+...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..|.+++...|++ ..++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 4568888899999999999999999999999 889999999999999999999999999999998876 78999
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHH
Q psy3224 899 AAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLE 977 (1278)
Q Consensus 899 ~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~ 977 (1278)
.++.++...|++++|+..|++++ ...|. +.++...|++++|+..+++++...|. +.++..+|.++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~------~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSL------TEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH------HHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHH------hcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 99999999999999999999998 55665 45677888999999999999999886 58999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 978 WCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSV 1057 (1278)
Q Consensus 978 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~ 1057 (1278)
...|++++|+.+|++++...|.++.++..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC------CCCHHHHHHHHHH
Q psy3224 1058 LEKGRLRN------PNCAELWLAAIRV 1078 (1278)
Q Consensus 1058 l~kal~~~------p~~~~~~~~l~~~ 1078 (1278)
|+++++++ |++..++..+..+
T Consensus 230 ~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 230 LDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 99999999 8888887666543
No 40
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.85 E-value=8.9e-20 Score=197.43 Aligned_cols=198 Identities=18% Similarity=0.108 Sum_probs=131.4
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Q psy3224 931 PNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQ 1009 (1278)
Q Consensus 931 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 1009 (1278)
|.++.++..+|.++...|++++|+..|++++..+|+ +.+|..+|.++...|++++|+..|+++++.+|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 455566666666666677777777777777766664 5666667777777777777777777777777777777777777
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy3224 1010 IEEQK-----------NLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRV 1078 (1278)
Q Consensus 1010 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~ 1078 (1278)
++... |++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.++ +++.+|..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 77777 777777777777777777777777777777777777777777777777777 777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHh
Q psy3224 1079 EIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKC 1129 (1278)
Q Consensus 1079 ~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~ 1129 (1278)
+...|++++|+..|+++++..|+++.++..++.++...|++++|+..+++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777776655
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.84 E-value=3.3e-20 Score=224.40 Aligned_cols=378 Identities=14% Similarity=0.052 Sum_probs=228.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCchHHHHHhhcccchH
Q psy3224 750 MEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTR---ESLETLLQKAVAHCPKSEVLWLMGAKSNKK 826 (1278)
Q Consensus 750 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~---~~A~~~l~~al~~~p~~~~~~~~~~~~~~~ 826 (1278)
..+|..+...|++++|+.+|+++.+. .+..+++.++.++...|+. ++|
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A--------------------------- 57 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQA--------------------------- 57 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHH---------------------------
Confidence 34677777888888888888888765 4556677777777666665 454
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy3224 827 SIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAG-----DVPAARGILSLAFQANPNSEEIWLAAV 901 (1278)
Q Consensus 827 ~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-----~~~~A~~~l~~al~~~p~~~~~~~~la 901 (1278)
+..|+++++. ++.+++.+|.++...+ ++++|+..|++++...+ +.+++.++
T Consensus 58 -------------------~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~Lg 113 (452)
T 3e4b_A 58 -------------------EATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGE--GNTLIPLA 113 (452)
T ss_dssp -----------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTC--SSCHHHHH
T ss_pred -------------------HHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH
Confidence 4444444433 3344555555433333 45555555555555322 33555555
Q ss_pred HHHHhcCcHHHH---HHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHhCCCHHHHHHHH
Q psy3224 902 KLESENNEYERA---RRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEY----ERARRLLAKARASAPTPRVMIQSA 974 (1278)
Q Consensus 902 ~l~~~~g~~~~A---~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~----~~A~~~l~~al~~~p~~~~~~~la 974 (1278)
.++...+...++ ...+.++. .+.++.+++.++.+|...+.+ +.+..++..+...+|. +++.+|
T Consensus 114 ~~y~~~~~~~~~~~a~~~~~~a~--------~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~--a~~~Lg 183 (452)
T 3e4b_A 114 MLYLQYPHSFPNVNAQQQISQWQ--------AAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDI--CYVELA 183 (452)
T ss_dssp HHHHHCGGGCTTCCHHHHHHHHH--------HHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTT--HHHHHH
T ss_pred HHHHhCCCCCCCHHHHHHHHHHH--------HCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHH--HHHHHH
Confidence 555544433222 22333222 233445566666666665533 3333344444333333 667777
Q ss_pred HHHHHcC---CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H-
Q psy3224 975 KLEWCLD---NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQK----NLLDKAHDTFSQAIKKCPHSVPLWIMLANL-E- 1045 (1278)
Q Consensus 975 ~~~~~~g---~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~la~l-~- 1045 (1278)
.++...| ++++|+.+|+++....|.....++.+|.+|... +++++|+.+|+++. |.++.+++.+|.+ +
T Consensus 184 ~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~ 260 (452)
T 3e4b_A 184 TVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYD 260 (452)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHH
T ss_pred HHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHh
Confidence 7777777 777777777777777777777777777777554 57778888887776 6777777777777 3
Q ss_pred -HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHCCCcHHHHHHHHhccCC----
Q psy3224 1046 -ERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAG-----LKDIANTMMAKALQECPNAGILWAEAIFLEPR---- 1115 (1278)
Q Consensus 1046 -~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g-----~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~---- 1115 (1278)
...+++++|+.+|+++... +++.++..++.++. .| ++++|..+|+++. |.++.+++.++.++..
T Consensus 261 ~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~ 334 (452)
T 3e4b_A 261 FPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLG 334 (452)
T ss_dssp SGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTS
T ss_pred CCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCC
Confidence 3577778888888877754 46777777777776 55 7788888888777 7777777777776654
Q ss_pred CCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHh----c
Q psy3224 1116 PQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWC----E 1191 (1278)
Q Consensus 1116 ~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~----~ 1191 (1278)
..++.+|+..|+++... .++.+.+.||.+|.. .
T Consensus 335 ~~d~~~A~~~~~~Aa~~-------------------------------------------g~~~A~~~Lg~~y~~G~g~~ 371 (452)
T 3e4b_A 335 KVYPQKALDHLLTAARN-------------------------------------------GQNSADFAIAQLFSQGKGTK 371 (452)
T ss_dssp SCCHHHHHHHHHHHHTT-------------------------------------------TCTTHHHHHHHHHHSCTTBC
T ss_pred CcCHHHHHHHHHHHHhh-------------------------------------------ChHHHHHHHHHHHHhCCCCC
Confidence 34777788888776221 122388899999874 5
Q ss_pred CCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH--hCCHHHHHHHHHHHHHhCCC
Q psy3224 1192 NKNQKCREWFNRTVKIDPDLGDAWAYFYKFEII--NGTEETQAEVKKRCLAAEPK 1244 (1278)
Q Consensus 1192 g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~--~G~~~~A~~~l~ka~~~~P~ 1244 (1278)
.++.+|..||++|.+..+ +++...+..+... .++..+|..++++.....+.
T Consensus 372 ~d~~~A~~~~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 372 PDPLNAYVFSQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp CCHHHHHHHHHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 689999999999998654 5566666665443 34556777777777765443
No 42
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=3.5e-19 Score=201.88 Aligned_cols=258 Identities=12% Similarity=0.007 Sum_probs=169.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHH
Q psy3224 754 ESCANQGAYECARAIYAQALATFPSK-KSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRA 832 (1278)
Q Consensus 754 ~~~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~ 832 (1278)
+..+..|+|..|+..++++...+|.+ .+....++.++...|+++.|+..++.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~--------------------------- 59 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP--------------------------- 59 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---------------------------
Confidence 44566788888888887776666665 34666677777777777776554432
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCcH
Q psy3224 833 AYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQA--NPNSEEIWLAAVKLESENNEY 910 (1278)
Q Consensus 833 a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~la~l~~~~g~~ 910 (1278)
.+|.+..++..++..+...++.++|++.+++++.. +|+++.+++.+|.++...|++
T Consensus 60 ----------------------~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~ 117 (291)
T 3mkr_A 60 ----------------------SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117 (291)
T ss_dssp ----------------------TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCH
T ss_pred ----------------------cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCH
Confidence 12223333444444444455555555555554443 355555555555555555555
Q ss_pred HHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH-HHHH--HHHHHHHHcCCHHHHH
Q psy3224 911 ERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTP-RVMI--QSAKLEWCLDNLERAL 987 (1278)
Q Consensus 911 ~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~~~--~la~~~~~~g~~~~A~ 987 (1278)
++|+..+++ |.+..++..++.++...|++++|+..|++++...|+. ...+ .+..++...|++++|+
T Consensus 118 ~~Al~~l~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~ 186 (291)
T 3mkr_A 118 DAALRTLHQ-----------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAY 186 (291)
T ss_dssp HHHHHHHTT-----------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHhC-----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHH
Confidence 555544432 4455555555555556666666666666666666552 1111 1223334457888888
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCC
Q psy3224 988 QLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIK-ARSVLEKGRLRNP 1066 (1278)
Q Consensus 988 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~-A~~~l~kal~~~p 1066 (1278)
.+|++++..+|+++.+|..+|.++...|++++|+..|++++..+|+++.++..++.++...|+..+ +..++++++.++|
T Consensus 187 ~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 187 YIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 888888888888888888888888888888888888888888888888888888888888888865 5678888888888
Q ss_pred CCHHH
Q psy3224 1067 NCAEL 1071 (1278)
Q Consensus 1067 ~~~~~ 1071 (1278)
+++.+
T Consensus 267 ~~~~~ 271 (291)
T 3mkr_A 267 SHPFI 271 (291)
T ss_dssp TCHHH
T ss_pred CChHH
Confidence 88876
No 43
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.84 E-value=4.2e-20 Score=219.49 Aligned_cols=304 Identities=10% Similarity=0.006 Sum_probs=238.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCc
Q psy3224 858 KSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSE----EIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNS 933 (1278)
Q Consensus 858 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~----~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~ 933 (1278)
.....++..|.++...|++++|+..|++++...|.++ .++..++.++...|++++|+..+++++.........|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3455677888888888888888888888888888763 567788888888888888888888887655444444556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCC--------------------HHHH
Q psy3224 934 EEIWLAAVKLESENNEYERARRLLAKARASAPT-------PRVMIQSAKLEWCLDN--------------------LERA 986 (1278)
Q Consensus 934 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-------~~~~~~la~~~~~~g~--------------------~~~A 986 (1278)
..++..++.++...|++++|+..+++++...+. ..++..+|.++...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 777888888888888888888888888877542 3578888888888888 8889
Q ss_pred HHHHHHHHHh------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHH
Q psy3224 987 LQLLDEAIKV------FPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSV------PLWIMLANLEERRKMLIKA 1054 (1278)
Q Consensus 987 ~~~l~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~l~~~~g~~~~A 1054 (1278)
+.++.+++.. .|....++..+|.++...|++++|+.+|++++...|... .++..+|.++...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888888876 334456888899999999999999999999988765543 3778889999999999999
Q ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHH
Q psy3224 1055 RSVLEKGRLRNPNC------AELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKK 1128 (1278)
Q Consensus 1055 ~~~l~kal~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k 1128 (1278)
+.+|++++...|.. ..++..++.++...|++++|..++.+++...+.......
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--------------------- 305 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIG--------------------- 305 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH---------------------
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHH---------------------
Confidence 99999998877654 567788888999999999999999988876543210000
Q ss_pred hccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy3224 1129 CEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKID 1208 (1278)
Q Consensus 1129 ~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~ 1208 (1278)
.+.++..+|.+|...|++++|+.+|++++++.
T Consensus 306 ------------------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 306 ------------------------------------------------EGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 01177889999999999999999999999975
Q ss_pred CCC------hhHHHHHHHHHHHhCCHHH
Q psy3224 1209 PDL------GDAWAYFYKFEIINGTEET 1230 (1278)
Q Consensus 1209 P~~------~d~~~~l~~~~~~~G~~~~ 1230 (1278)
+.. ..++..++.++...|+...
T Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 338 REVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 444 4578888999998887643
No 44
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.84 E-value=1e-19 Score=196.90 Aligned_cols=210 Identities=19% Similarity=0.103 Sum_probs=125.7
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHH
Q psy3224 857 PKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEI 936 (1278)
Q Consensus 857 P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~ 936 (1278)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.+|..++.++...|++++|+..|++++ ..+|++..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al------~~~P~~~~a 75 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLV------ARTPRYLGG 75 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCTTCHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCcHHH
Confidence 45556666677777777777777777777777777777777777777666666666666666665 556666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCC
Q psy3224 937 WLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNL 1016 (1278)
Q Consensus 937 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~ 1016 (1278)
|..++.++...+.. .+. .+...|++++|+..|+++++.+|+++.+|..+|.++...|+
T Consensus 76 ~~~lg~~~~~~~~~-------------~~~---------~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 76 YMVLSEAYVALYRQ-------------AED---------RERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGE 133 (217)
T ss_dssp HHHHHHHHHHHHHT-------------CSS---------HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhh-------------hhh---------hcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 66666665554100 000 01122566666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 1017 LDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKA 1095 (1278)
Q Consensus 1017 ~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ka 1095 (1278)
+++|+..|+++++.+ +++.++..+|.++...|++++|+..|++++..+|+++.++..++.++...|++++|+..|+++
T Consensus 134 ~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 134 RDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred hHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666 666666666666666666666666666666666666666666666666666666666666654
No 45
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.84 E-value=1.1e-18 Score=212.16 Aligned_cols=218 Identities=12% Similarity=0.068 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q psy3224 843 ESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARA 922 (1278)
Q Consensus 843 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~ 922 (1278)
..+..+|++++...|..+.+|+.++..+...|+.+.|+.+|++++.. |.+..+|+.++.+.. .++ .++.+..
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e-~~~------~~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMD-EEA------VYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTT-CTH------HHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcc-hhH------HHHHHHH
Confidence 34678999999999999999999999999999999999999999999 998888887766521 111 1222221
Q ss_pred hhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH
Q psy3224 923 QAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAK 1002 (1278)
Q Consensus 923 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 1002 (1278)
.. ..... ..+. . ........+|..++.++.+.+..+.|+.+|+++ ...+....
T Consensus 268 ~~---~~~~~-------------~~~~---~-------~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~ 320 (493)
T 2uy1_A 268 KY---SMGEA-------------ESAE---K-------VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPH 320 (493)
T ss_dssp HT---C---------------------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHH
T ss_pred HH---Hhhcc-------------chhh---h-------hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChH
Confidence 00 00000 0000 0 000001467888888888888888899999888 43333567
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 1003 LWMMKGQIEEQKN-LLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIR 1081 (1278)
Q Consensus 1003 ~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~ 1081 (1278)
+|...+.+....+ +++.|+.+|+.+++..|+++..|..++.++...|+.+.|+.+|+++ +.+..+|..+..++..
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~ 396 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFM 396 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 8887787777666 5899999999999999998888888888888999999999999988 4578889999999999
Q ss_pred cCCHHHHHHHHHHHHHHC
Q psy3224 1082 AGLKDIANTMMAKALQEC 1099 (1278)
Q Consensus 1082 ~g~~~~A~~~~~kal~~~ 1099 (1278)
.|+.+.+..++++++...
T Consensus 397 ~G~~~~~r~v~~~~~~~~ 414 (493)
T 2uy1_A 397 VGSMELFRELVDQKMDAI 414 (493)
T ss_dssp HSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999888643
No 46
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=4.8e-19 Score=202.87 Aligned_cols=240 Identities=13% Similarity=0.135 Sum_probs=216.7
Q ss_pred CcHHHHHHHHHHHHHc----CCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------cCcH-------HHHHH
Q psy3224 858 KSEVLWLMGAKSKWLA----GDV----PAARGILSLAFQANPNSEEIWLAAVKLESE-------NNEY-------ERARR 915 (1278)
Q Consensus 858 ~~~~~~~~la~~~~~~----g~~----~~A~~~l~~al~~~p~~~~~~~~la~l~~~-------~g~~-------~~A~~ 915 (1278)
.....|..+....... ++. ++|+.+|++++..+|.++.+|+.++.++.. .|++ ++|+.
T Consensus 6 ~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 6 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 3456777777776553 243 789999999999999999999999999864 4775 89999
Q ss_pred HHHHHHHhhhhhh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 916 LLAKARAQAGAFQ-ANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PR-VMIQSAKLEWCLDNLERALQLLDE 992 (1278)
Q Consensus 916 ~l~~al~~~~~l~-~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~-~~~~la~~~~~~g~~~~A~~~l~~ 992 (1278)
+|++++ . ..|.+..+|..++.++...|++++|+.+|++++...|. +. +|..++.++...|++++|+.+|++
T Consensus 86 ~~~rAl------~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 86 IYERAI------STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHH------TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHH------HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999998 7 58999999999999999999999999999999999986 44 999999999999999999999999
Q ss_pred HHHhCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-C
Q psy3224 993 AIKVFPDFAKLWMMKGQIEEQ-KNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLR---NP-N 1067 (1278)
Q Consensus 993 al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~---~p-~ 1067 (1278)
+++..|.+..+|...+.+... .|++++|+.+|+++++.+|+++.+|..++.++...|++++|+.+|++++.. .| +
T Consensus 160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~ 239 (308)
T 2ond_A 160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHH
Confidence 999999999999888777554 799999999999999999999999999999999999999999999999996 45 4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Q psy3224 1068 CAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAG 1103 (1278)
Q Consensus 1068 ~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~ 1103 (1278)
...+|..++.++...|+.++|..++.++++.+|++.
T Consensus 240 ~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 240 SGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 788999999999999999999999999999999864
No 47
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.83 E-value=3.4e-19 Score=211.65 Aligned_cols=300 Identities=9% Similarity=-0.046 Sum_probs=213.7
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhc
Q psy3224 746 KHTWMEDAESCANQGAYECARAIYAQALATFPSKK----SIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGA 821 (1278)
Q Consensus 746 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~ 821 (1278)
...++..|..+...|++++|+.+|++++...|.+. .++..++.++...|++++|+..+++++...+..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-------- 80 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-------- 80 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--------
Confidence 45778889999999999999999999999998884 567788888888888888777777755432110
Q ss_pred ccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q psy3224 822 KSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNS------EE 895 (1278)
Q Consensus 822 ~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~ 895 (1278)
...|....++..+|.++...|++++|+..|.+++...|.. ..
T Consensus 81 --------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 128 (406)
T 3sf4_A 81 --------------------------------GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128 (406)
T ss_dssp --------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred --------------------------------cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence 0012234567777777777888888888888777765532 44
Q ss_pred HHHHHHHHHHhcCc--------------------HHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 896 IWLAAVKLESENNE--------------------YERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARR 955 (1278)
Q Consensus 896 ~~~~la~l~~~~g~--------------------~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~ 955 (1278)
++..++.++...|+ +++|+..+.+++.........|....++..++.++...|++++|+.
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 67777778887787 7777777777775544333344445667777888888888888888
Q ss_pred HHHHHHHhCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHcCCHHHHHH
Q psy3224 956 LLAKARASAP---T----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF------AKLWMMKGQIEEQKNLLDKAHD 1022 (1278)
Q Consensus 956 ~l~~al~~~p---~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~ 1022 (1278)
.|++++...+ + ..++..+|.++...|++++|+.+|++++...|.. ..++..+|.++...|++++|..
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 8888776643 2 2477777788888888888888888887766544 5677778888888888888888
Q ss_pred HHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCH
Q psy3224 1023 TFSQAIKKCPHS------VPLWIMLANLEERRKMLIKARSVLEKGRLRNPN------CAELWLAAIRVEIRAGLK 1085 (1278)
Q Consensus 1023 ~~~~al~~~p~~------~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~------~~~~~~~l~~~~~~~g~~ 1085 (1278)
.|++++...+.. ..++..+|.++...|++++|+.+|++++.+.+. ...++..++.++...|+.
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 888887765433 556777778888888888888888887776432 234556666666666654
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.82 E-value=4.7e-19 Score=211.44 Aligned_cols=276 Identities=9% Similarity=-0.002 Sum_probs=242.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHH
Q psy3224 828 IWLRAAYFEKNHGTRESLETLLQKAVAHCPKSE----VLWLMGAKSKWLAGDVPAARGILSLAFQA------NPNSEEIW 897 (1278)
Q Consensus 828 ~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~~~~~ 897 (1278)
.++..+..+...|++++|+.+|+++++..|.+. .++..+|.++...|++++|+..|++++.. .|....++
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 129 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS 129 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence 455667788889999999999999999999986 57899999999999999999999999987 45567889
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHH
Q psy3224 898 LAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNE-----------------YERARRLLAKA 960 (1278)
Q Consensus 898 ~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~-----------------~~~A~~~l~~a 960 (1278)
..++.++...|++++|+..+++++.........|....++..++.++...|+ +++|+..|+++
T Consensus 130 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 209 (411)
T 4a1s_A 130 GNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN 209 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999997665444456677889999999999999 99999999999
Q ss_pred HHhCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 961 RASAP---T----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFA------KLWMMKGQIEEQKNLLDKAHDTFSQA 1027 (1278)
Q Consensus 961 l~~~p---~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~a 1027 (1278)
+...+ . ..++..+|.++...|++++|+.+|++++...+... .++..+|.++...|++++|+.+|+++
T Consensus 210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 87642 2 46888999999999999999999999999877543 38899999999999999999999999
Q ss_pred HHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 1028 IKKCPHS------VPLWIMLANLEERRKMLIKARSVLEKGRLRNPNC------AELWLAAIRVEIRAGLKDIANTMMAKA 1095 (1278)
Q Consensus 1028 l~~~p~~------~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~ka 1095 (1278)
+...+.. ..++..+|.++...|++++|+.+|++++...+.. ..++..++.++...|++++|..+|+++
T Consensus 290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9887754 6788899999999999999999999999886532 357888999999999999999999999
Q ss_pred HHHCCCcH
Q psy3224 1096 LQECPNAG 1103 (1278)
Q Consensus 1096 l~~~P~~~ 1103 (1278)
++..+...
T Consensus 370 l~~~~~~~ 377 (411)
T 4a1s_A 370 LQLAXXXX 377 (411)
T ss_dssp HHHCCHHH
T ss_pred HHHHhhcc
Confidence 99987654
No 49
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.82 E-value=5.6e-19 Score=203.09 Aligned_cols=283 Identities=10% Similarity=0.019 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHH
Q psy3224 861 VLWLMGAKSKWLAGDVPAARGILSLAFQANPNS----EEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEI 936 (1278)
Q Consensus 861 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~ 936 (1278)
..++..|..+...|++++|+..|+++++..|++ ..++..++.++...|++++|+.++++++.........|....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 345666777777777777777777777777776 3566677777777777777777777776554433334455666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C----HHHHHHHHHHHHHcCC--------------------HHHHHHH
Q psy3224 937 WLAAVKLESENNEYERARRLLAKARASAP---T----PRVMIQSAKLEWCLDN--------------------LERALQL 989 (1278)
Q Consensus 937 ~~~la~~~~~~g~~~~A~~~l~~al~~~p---~----~~~~~~la~~~~~~g~--------------------~~~A~~~ 989 (1278)
+..++.++...|++++|+..+++++...+ + ..++..++.++...|+ +++|+.+
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77777777777777777777777776533 2 3467777777777777 7777777
Q ss_pred HHHHHHhC------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 990 LDEAIKVF------PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS------VPLWIMLANLEERRKMLIKARSV 1057 (1278)
Q Consensus 990 l~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~l~~~~g~~~~A~~~ 1057 (1278)
+++++... +....++..+|.++...|++++|+.+|++++...+.. ..++..++.++...|++++|+.+
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77776652 2334577777888888888888888888887665432 23667778888888888888888
Q ss_pred HHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhcc
Q psy3224 1058 LEKGRLRNPNC------AELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEH 1131 (1278)
Q Consensus 1058 l~kal~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~ 1131 (1278)
|++++...+.. ..++..++.++...|++++|..++++++...|.......
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~------------------------ 301 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG------------------------ 301 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH------------------------
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH------------------------
Confidence 88887765543 456677777788888888888888777765432110000
Q ss_pred CcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q psy3224 1132 DPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDL 1211 (1278)
Q Consensus 1132 ~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~ 1211 (1278)
...++..+|.+|...|++++|..+|++++.+.++.
T Consensus 302 ---------------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 302 ---------------------------------------------EGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp ---------------------------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC----
T ss_pred ---------------------------------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh
Confidence 01167778888888888888888888888877765
Q ss_pred h
Q psy3224 1212 G 1212 (1278)
Q Consensus 1212 ~ 1212 (1278)
+
T Consensus 337 ~ 337 (338)
T 3ro2_A 337 G 337 (338)
T ss_dssp -
T ss_pred c
Confidence 4
No 50
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.81 E-value=9.1e-19 Score=208.92 Aligned_cols=285 Identities=8% Similarity=-0.045 Sum_probs=223.2
Q ss_pred hHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhh
Q psy3224 745 RKHTWMEDAESCANQGAYECARAIYAQALATFPSKK----SIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMG 820 (1278)
Q Consensus 745 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~ 820 (1278)
....++.+|..+...|++++|+.+|++++...|.+. .+|..++.++...|++++|+..+++++......
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------- 119 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSM------- 119 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-------
Confidence 345677888999999999999999999999999887 467788888888888888777777755431100
Q ss_pred cccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCH
Q psy3224 821 AKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQA------NPNSE 894 (1278)
Q Consensus 821 ~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~~ 894 (1278)
...|....++..+|.++...|++++|+..|.+++.. .|...
T Consensus 120 ---------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 166 (411)
T 4a1s_A 120 ---------------------------------NDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEG 166 (411)
T ss_dssp ---------------------------------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ---------------------------------cCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 002334456777777777777888887777777776 33345
Q ss_pred HHHHHHHHHHHhcCc-----------------HHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 895 EIWLAAVKLESENNE-----------------YERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLL 957 (1278)
Q Consensus 895 ~~~~~la~l~~~~g~-----------------~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 957 (1278)
.++..++.++...|+ +++|+.++++++.........+....++..++.++...|++++|+.+|
T Consensus 167 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 246 (411)
T 4a1s_A 167 RALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHH 246 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 677778888888888 888888888877555444334555667888899999999999999999
Q ss_pred HHHHHhCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 958 AKARASAPT-------PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF------AKLWMMKGQIEEQKNLLDKAHDTF 1024 (1278)
Q Consensus 958 ~~al~~~p~-------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 1024 (1278)
++++...+. ..++..++.++...|++++|+.+|++++...+.. ..++..+|.++...|++++|+.+|
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (411)
T 4a1s_A 247 QERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYH 326 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999887653 2488889999999999999999999999887643 678899999999999999999999
Q ss_pred HHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy3224 1025 SQAIKKCPHS------VPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCA 1069 (1278)
Q Consensus 1025 ~~al~~~p~~------~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~ 1069 (1278)
++++...+.. ..++..++.++...|++++|+.+|++++.+.+...
T Consensus 327 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 377 (411)
T 4a1s_A 327 NRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXXX 377 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc
Confidence 9999875432 45788899999999999999999999999987544
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.80 E-value=1.9e-18 Score=189.47 Aligned_cols=211 Identities=17% Similarity=0.123 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHH
Q psy3224 861 VLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAA 940 (1278)
Q Consensus 861 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~l 940 (1278)
..|+.+|.++...|++++|+..|++++...|.+..++..++.++...|++++|+..+++++ ...|.+..++..+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~~~~l 97 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKAL------ELDSSAATAYYGA 97 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HcCCcchHHHHHH
Confidence 4566666666666777777777777776666666666666666666666666666666555 4455555555555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHH
Q psy3224 941 VKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDK 1019 (1278)
Q Consensus 941 a~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~ 1019 (1278)
+.++...|++++|+..|++++...|. +.++..++.++...|++++|+.++++++...|+++.++..+|.++...|++++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 55555555555555555555444442 34444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 1020 AHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIR 1077 (1278)
Q Consensus 1020 A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~ 1077 (1278)
|+..|++++...|.+..++..++.++...|++++|+.+|++++..+|+++.++..++.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 4444444444444444444444444444444444444444444444444444444333
No 52
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.80 E-value=1.5e-18 Score=199.40 Aligned_cols=275 Identities=9% Similarity=-0.012 Sum_probs=234.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHH
Q psy3224 828 IWLRAAYFEKNHGTRESLETLLQKAVAHCPKSE----VLWLMGAKSKWLAGDVPAARGILSLAFQA------NPNSEEIW 897 (1278)
Q Consensus 828 ~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~----~~~~~la~~~~~~g~~~~A~~~l~~al~~------~p~~~~~~ 897 (1278)
.++..+..+...|++++|+.+|+++++..|.++ .++..+|.++...|++++|+..+++++.. .|....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 466677888899999999999999999999884 67889999999999999999999999877 33346788
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q psy3224 898 LAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNE--------------------YERARRLL 957 (1278)
Q Consensus 898 ~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~--------------------~~~A~~~l 957 (1278)
..++.++...|++++|+..+++++.........+....++..++.++...|+ +++|+..+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999986654332223335588899999999999 99999999
Q ss_pred HHHHHhCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 958 AKARASAP---T----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF------AKLWMMKGQIEEQKNLLDKAHDTF 1024 (1278)
Q Consensus 958 ~~al~~~p---~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 1024 (1278)
++++...+ + ..++..++.++...|++++|+.++++++...+.. ..++..+|.++...|++++|..+|
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99987632 2 4688899999999999999999999999876543 348999999999999999999999
Q ss_pred HHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 1025 SQAIKKCPHS------VPLWIMLANLEERRKMLIKARSVLEKGRLRNPNC------AELWLAAIRVEIRAGLKDIANTMM 1092 (1278)
Q Consensus 1025 ~~al~~~p~~------~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~ 1092 (1278)
++++...+.. ..++..+|.++...|++++|+.+|++++...+.. ..++..++.++...|++++|..++
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 9999887655 6788899999999999999999999999876533 347889999999999999999999
Q ss_pred HHHHHHCCCc
Q psy3224 1093 AKALQECPNA 1102 (1278)
Q Consensus 1093 ~kal~~~P~~ 1102 (1278)
++++...+..
T Consensus 327 ~~a~~~~~~~ 336 (338)
T 3ro2_A 327 EKHLEISREV 336 (338)
T ss_dssp HHHHHC----
T ss_pred HHHHHHHHhh
Confidence 9999987654
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.80 E-value=3.5e-18 Score=187.27 Aligned_cols=217 Identities=17% Similarity=0.132 Sum_probs=187.8
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHH
Q psy3224 893 SEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMI 971 (1278)
Q Consensus 893 ~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~ 971 (1278)
.+..|+.+|.++...|++++|+.+|++++ ...|.+..++..++.++...|++++|+..|++++...|. ..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 95 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAI------EENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYY 95 (243)
T ss_dssp --------------------CCTTHHHHH------TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHH------HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHH
Confidence 35678899999999999999999999998 889999999999999999999999999999999999885 79999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy3224 972 QSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKML 1051 (1278)
Q Consensus 972 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~ 1051 (1278)
.++.++...|++++|+.+|+++++..|.++.++..+|.++...|++++|+..|++++...|.+..++..++.++...|++
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCC
Q psy3224 1052 IKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPR 1115 (1278)
Q Consensus 1052 ~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~ 1115 (1278)
++|+..|++++...|+++.+|..++.++...|++++|...++++++..|++..++..++.+...
T Consensus 176 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 176 DEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999877766543
No 54
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.80 E-value=4.6e-18 Score=205.52 Aligned_cols=371 Identities=15% Similarity=0.062 Sum_probs=238.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 716 AIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAY---ECARAIYAQALATFPSKKSIWLRAAYFEKN 792 (1278)
Q Consensus 716 A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~P~~~~~~~~la~~~~~ 792 (1278)
+..+...|+++.|..+|+.+...+ ...+++.+|.++...|+. ++|+.+|+++++. ++.++..++.++..
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g-----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG-----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-----CCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 333444444444444444444321 123566667777767766 7788888877765 55677777775555
Q ss_pred cC-----CHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHhCCCcHHHHH
Q psy3224 793 HG-----TRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTR---ESLETLLQKAVAHCPKSEVLWL 864 (1278)
Q Consensus 793 ~g-----~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~---~~A~~~~~~al~~~P~~~~~~~ 864 (1278)
.+ ++++|+..|++++...+... ++.++.++...+.. ..+...+.++... .++.+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A--------------~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~--g~~~a~~ 145 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNT--------------LIPLAMLYLQYPHSFPNVNAQQQISQWQAA--GYPEAGL 145 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSC--------------HHHHHHHHHHCGGGCTTCCHHHHHHHHHHH--TCTTHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHH--------------HHHHHHHHHhCCCCCCCHHHHHHHHHHHHC--CCHHHHH
Confidence 54 66777777777777554432 34444444433332 2244444444433 3456788
Q ss_pred HHHHHHHHcCCHHHHH----HHHHHHHHhCCCCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHHhhhhhhcCCCcHHHH
Q psy3224 865 MGAKSKWLAGDVPAAR----GILSLAFQANPNSEEIWLAAVKLESENN---EYERARRLLAKARAQAGAFQANPNSEEIW 937 (1278)
Q Consensus 865 ~la~~~~~~g~~~~A~----~~l~~al~~~p~~~~~~~~la~l~~~~g---~~~~A~~~l~~al~~~~~l~~~p~~~~~~ 937 (1278)
.+|.+|...+.++++. .++..+...+| .+++.++.++...| ++++|+..|+++. ...|.....+
T Consensus 146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa------~~g~~~a~~~ 216 (452)
T 3e4b_A 146 AQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGV------SRGTVTAQRV 216 (452)
T ss_dssp HHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHH------HTTCSCHHHH
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHH------HCCCHHHHHH
Confidence 8888888887554444 44444444444 38888888888888 8889999998887 7788888888
Q ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHhCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy3224 938 LAAVKLESEN----NEYERARRLLAKARASAPTPRVMIQSAKL-E--WCLDNLERALQLLDEAIKVFPDFAKLWMMKGQI 1010 (1278)
Q Consensus 938 ~~la~~~~~~----g~~~~A~~~l~~al~~~p~~~~~~~la~~-~--~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 1010 (1278)
+.++.+|... +++++|+..|+++. ..++..++.++.+ + ...+++++|+.+|+++... .++.+++.+|.+
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~ 292 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKL 292 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHH
Confidence 8888888655 68899999999887 3456888888887 4 4578999999999998865 478888999988
Q ss_pred HHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 1011 EEQKN-----LLDKAHDTFSQAIKKCPHSVPLWIMLANLEER----RKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIR 1081 (1278)
Q Consensus 1011 ~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~----~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~ 1081 (1278)
|. .| ++++|+.+|+++. +.++.+++.+|.+|.. ..++++|+.+|+++.. +.++.....++.+|..
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~ 366 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQ 366 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHS
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHh
Confidence 87 45 8999999999988 8888899999988876 4488999999998876 4556677788887764
Q ss_pred ----cCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHh
Q psy3224 1082 ----AGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKC 1129 (1278)
Q Consensus 1082 ----~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~ 1129 (1278)
..++.+|..+|.++.+..+.........+.......+..+|...++..
T Consensus 367 G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~ 418 (452)
T 3e4b_A 367 GKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQE 418 (452)
T ss_dssp CTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 358889999999988776544444444444444455666677777665
No 55
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.80 E-value=4.4e-18 Score=190.40 Aligned_cols=247 Identities=12% Similarity=0.002 Sum_probs=206.3
Q ss_pred HcCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHH
Q psy3224 946 ENNEYERARRLLAKARASAP-----TPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKA 1020 (1278)
Q Consensus 946 ~~g~~~~A~~~l~~al~~~p-----~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A 1020 (1278)
..+++++|+..|++++...+ .+.++..+|.++...|++++|+.+|++++..+|+++.+|..+|.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 56788899999999888743 2588899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q psy3224 1021 HDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECP 1100 (1278)
Q Consensus 1021 ~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P 1100 (1278)
+.+|++++..+|.++.++..+|.++...|++++|+.+|++++...|+++..+.... +....|++++|...+.+++...|
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~ 175 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSD 175 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999986655444 44667999999999999999999
Q ss_pred CcHHHHHHHHhccCCCCChhHHHHHHHHhc-cCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHH
Q psy3224 1101 NAGILWAEAIFLEPRPQRKTKSVDALKKCE-HDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPH 1179 (1278)
Q Consensus 1101 ~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~-~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~ 1179 (1278)
++...|. .+..+...++.++|+..++++. ..|. ..|.++.
T Consensus 176 ~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------------------~~~~~~~ 216 (275)
T 1xnf_A 176 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTS--------------------------------------LAEHLSE 216 (275)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--------------------------------------HHHHHHH
T ss_pred cchHHHH-HHHHHHHhcCHHHHHHHHHHHhccccc--------------------------------------ccccccH
Confidence 8877776 5555667777788998888873 2222 0112234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHH
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVK 1235 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l 1235 (1278)
++..+|.+|...|++++|+.+|++++..+|++...+ +.++...|++++|.+.+
T Consensus 217 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 217 TNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence 889999999999999999999999999999875544 55677888888887776
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.79 E-value=1.4e-18 Score=194.42 Aligned_cols=245 Identities=10% Similarity=-0.046 Sum_probs=205.7
Q ss_pred hcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHH
Q psy3224 838 NHGTRESLETLLQKAVAHC----PKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERA 913 (1278)
Q Consensus 838 ~~g~~~~A~~~~~~al~~~----P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A 913 (1278)
..+++++|+..|+++++.. |.+..++..+|.++...|++++|+..|++++...|++..+|..+|.++...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 4577889999999999874 456788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 914 RRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEA 993 (1278)
Q Consensus 914 ~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~a 993 (1278)
+.+|++++ ..+|.+..+|..++.++...|++++|+..|++++...|+.........+....|++++|+..+.++
T Consensus 97 ~~~~~~al------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 97 YEAFDSVL------ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHH------HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHH------hcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999998 778999999999999999999999999999999999887443333444556778999999999999
Q ss_pred HHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy3224 994 IKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH----SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCA 1069 (1278)
Q Consensus 994 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~ 1069 (1278)
+...|.+...+. ++.++...++.++|...+.+++...|. ++.+|..+|.++...|++++|+..|++++..+|++.
T Consensus 171 ~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 249 (275)
T 1xnf_A 171 FEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 249 (275)
T ss_dssp HHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH
Confidence 999888766654 667777888889999999988876664 367888999999999999999999999999998764
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 1070 ELWLAAIRVEIRAGLKDIANTMM 1092 (1278)
Q Consensus 1070 ~~~~~l~~~~~~~g~~~~A~~~~ 1092 (1278)
. .++.++...|++++|+..+
T Consensus 250 ~---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 V---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHHhhHHHH
Confidence 3 3366777788888888776
No 57
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=3.2e-17 Score=176.98 Aligned_cols=211 Identities=15% Similarity=0.081 Sum_probs=118.6
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcH
Q psy3224 855 HCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSE 934 (1278)
Q Consensus 855 ~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~ 934 (1278)
..|.++.+|+.+|.++...|++++|+..|+++++..|++..++..++.++...|++++|+.++++++ ...|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~------~~~~~~~ 76 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQAL------SIKPDSA 76 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCTTCH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHH------HhCCCCh
Confidence 3456667777777777777777777777777777777777777777777776666666666666665 4555555
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy3224 935 EIWLAAVKLESEN-NEYERARRLLAKARA--SAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQI 1010 (1278)
Q Consensus 935 ~~~~~la~~~~~~-g~~~~A~~~l~~al~--~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 1010 (1278)
.++..++.++... |++++|+..|++++. ..|. ..++..++.++...|++++|+.+|+++++..|.++.++..+|.+
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART 156 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 5555555555555 555555555555555 2222 24444444444444444444444444444444444444444444
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 1011 EEQKNLLDKAHDTFSQAIKKCP-HSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 1011 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
+...|++++|..+|++++...| .+...+..++.++...|+.+.|..+++.+...+|+++.+
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 4444444444444444444444 444444444444444444444444444444444444443
No 58
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=1.7e-17 Score=183.24 Aligned_cols=211 Identities=13% Similarity=0.066 Sum_probs=126.1
Q ss_pred hCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCc
Q psy3224 855 HCPKS-EVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNS 933 (1278)
Q Consensus 855 ~~P~~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~ 933 (1278)
.+|.. ..+|+.+|.++...|++++|+..|++++...|.+..++..++.++...|++++|+..+++++ ...|.+
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~------~~~~~~ 104 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKAL------ASDSRN 104 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCTTC
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHCcCc
Confidence 44554 67788888888888888888888888888888888888888888887777777777777766 556666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy3224 934 EEIWLAAVKLESENNEYERARRLLAKARA--SAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQI 1010 (1278)
Q Consensus 934 ~~~~~~la~~~~~~g~~~~A~~~l~~al~--~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 1010 (1278)
..++..++.++...|++++|+.+|++++. ..|. ..++..++.++...|++++|+.+|++++...|.++.++..+|.+
T Consensus 105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 184 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL 184 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 66666666666666666666555555555 3332 24444444444444444444444444444444444444444444
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 1011 EEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 1011 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
+...|++++|..+|++++...|.+..++..++.++...|++++|..++++++...|+++.+
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 4444444444444444444444444444444444444444444444444444444444433
No 59
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=4.3e-17 Score=175.90 Aligned_cols=214 Identities=15% Similarity=0.136 Sum_probs=201.4
Q ss_pred hCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-H
Q psy3224 889 ANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-P 967 (1278)
Q Consensus 889 ~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~ 967 (1278)
..|.++.+|..++.++...|++++|+..+++++ ...|.+..++..++.++...|++++|+..|++++...|. .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 76 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDAL------KSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA 76 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH------HhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 457778899999999999999999999999998 789999999999999999999999999999999999885 7
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCL-DNLERALQLLDEAIK--VFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANL 1044 (1278)
Q Consensus 968 ~~~~~la~~~~~~-g~~~~A~~~l~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l 1044 (1278)
.++..++.++... |++++|+.+|++++. ..|.+..++..+|.++...|++++|+..|.++++..|.++.++..++.+
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART 156 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 8999999999999 999999999999999 7788899999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Q psy3224 1045 EERRKMLIKARSVLEKGRLRNP-NCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAE 1108 (1278)
Q Consensus 1045 ~~~~g~~~~A~~~l~kal~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~ 1108 (1278)
+...|++++|+.+|++++...| .++..+..++.++...|+.++|..+++.++...|+++.+...
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999999999999999999999 999999888889999999999999999999999999887654
No 60
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.79 E-value=2.4e-17 Score=182.05 Aligned_cols=214 Identities=18% Similarity=0.137 Sum_probs=203.3
Q ss_pred hCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q psy3224 889 ANPNS-EEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT- 966 (1278)
Q Consensus 889 ~~p~~-~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~- 966 (1278)
.+|.. +.+|..++.++...|++++|+..|++++ ...|.+..++..++.++...|++++|+..|++++...|.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 104 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKAL------EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRN 104 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHH------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH------hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc
Confidence 34544 7789999999999999999999999998 779999999999999999999999999999999999885
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIK--VFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANL 1044 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l 1044 (1278)
..++..++.++...|++++|+.+|++++. ..|.+..++..+|.++...|++++|+.+|++++...|.+..++..++.+
T Consensus 105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 184 (252)
T 2ho1_A 105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL 184 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence 78999999999999999999999999999 8899999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH
Q psy3224 1045 EERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAE 1108 (1278)
Q Consensus 1045 ~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~ 1108 (1278)
+...|++++|+.+|++++...|.+...+..++.++...|++++|..+++++++..|+++.++..
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999887653
No 61
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=9.5e-17 Score=180.01 Aligned_cols=236 Identities=11% Similarity=0.008 Sum_probs=204.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHHHHHhhhhhhcCC
Q psy3224 856 CPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESE----NNEYERARRLLAKARAQAGAFQANP 931 (1278)
Q Consensus 856 ~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~----~g~~~~A~~~l~~al~~~~~l~~~p 931 (1278)
.|.++.+++.+|.++...|++++|+..|+++++ |+++.++..++.++.. .+++++|+..|++++ ..
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~------~~-- 71 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC------DL-- 71 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH------HT--
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH------HC--
Confidence 467788899999999999999999999999988 6778889999999998 999999999999987 33
Q ss_pred CcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCChHHH
Q psy3224 932 NSEEIWLAAVKLESE----NNEYERARRLLAKARASAPTPRVMIQSAKLEWC----LDNLERALQLLDEAIKVFPDFAKL 1003 (1278)
Q Consensus 932 ~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~ 1003 (1278)
.++.++..++.++.. .+++++|+..|++++... .+.++..++.++.. .+++++|+.+|+++++.. ++.+
T Consensus 72 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a 148 (273)
T 1ouv_A 72 NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDG 148 (273)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHH
Confidence 378889999999998 999999999999998874 68889999999998 999999999999999875 5788
Q ss_pred HHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy3224 1004 WMMKGQIEEQ----KNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER----RKMLIKARSVLEKGRLRNPNCAELWLAA 1075 (1278)
Q Consensus 1004 ~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~----~g~~~~A~~~l~kal~~~p~~~~~~~~l 1075 (1278)
+..+|.++.. .+++++|+.+|+++++.. ++.++..++.++.. .+++++|+.+|++++...| +.++..+
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l 224 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNL 224 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHH
Confidence 8999999988 899999999999998874 57889999999999 9999999999999998866 7788899
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHHCCCcHHHHHH
Q psy3224 1076 IRVEIR----AGLKDIANTMMAKALQECPNAGILWAE 1108 (1278)
Q Consensus 1076 ~~~~~~----~g~~~~A~~~~~kal~~~P~~~~~~~~ 1108 (1278)
+.++.. .+++++|+.+|+++++..|++...+..
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~ 261 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILK 261 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999998 899999999999999998876655543
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.77 E-value=2.8e-17 Score=172.22 Aligned_cols=172 Identities=16% Similarity=0.123 Sum_probs=132.3
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy3224 932 NSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQI 1010 (1278)
Q Consensus 932 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 1010 (1278)
++..+|+.+|.++...|++++|+..|+++++.+|+ +.+|..+|.++...|++++|+..+.+++...|+++.++..+|.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 34566777777777777777777777777777775 57777777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 1011 EEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANT 1090 (1278)
Q Consensus 1011 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 1090 (1278)
+...++++.|...+.+++..+|.+..++..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 77777788888888877777777777777778777778888888888888888888777777777777777888888888
Q ss_pred HHHHHHHHCCCcH
Q psy3224 1091 MMAKALQECPNAG 1103 (1278)
Q Consensus 1091 ~~~kal~~~P~~~ 1103 (1278)
.|+++++.+|+++
T Consensus 163 ~~~~al~~~p~~a 175 (184)
T 3vtx_A 163 YFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHTTHHHH
T ss_pred HHHHHHhCCccCH
Confidence 8888877777654
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.77 E-value=1e-17 Score=203.85 Aligned_cols=214 Identities=13% Similarity=0.063 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcH-HHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy3224 876 VPAARGILSLAFQANPNSEEIWLAAVKLESENNEY-ERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERAR 954 (1278)
Q Consensus 876 ~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~-~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~ 954 (1278)
+++|+..+..+....|.+..+++.+|.++...|++ ++|+..|++++ ..+|.+..+|..+|.++...|++++|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al------~~~p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAV------KLEPELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHH------HHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHH------hhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 34444455555555555555555555555555555 55555555555 445555555556666666677777777
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc--------CCH
Q psy3224 955 RLLAKARASAPTPRVMIQSAKLEWCL---------DNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQK--------NLL 1017 (1278)
Q Consensus 955 ~~l~~al~~~p~~~~~~~la~~~~~~---------g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~--------g~~ 1017 (1278)
..|++++...|+..++..+|.++... |++++|+.+|+++++.+|+++.+|..+|.++... |++
T Consensus 158 ~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 158 TCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 77777777777777777777777777 8888999999999999999999999999999888 889
Q ss_pred HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 1018 DKAHDTFSQAIKKCP---HSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAK 1094 (1278)
Q Consensus 1018 ~~A~~~~~~al~~~p---~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~k 1094 (1278)
++|+.+|+++++.+| .++.+|..+|.++...|++++|+..|++++.++|+++.+|..++.++...|++++|+..+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999 89999999999999999999999999999999999999999999999999988888876644
Q ss_pred H
Q psy3224 1095 A 1095 (1278)
Q Consensus 1095 a 1095 (1278)
.
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.76 E-value=5e-17 Score=170.33 Aligned_cols=171 Identities=18% Similarity=0.174 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHH
Q psy3224 894 EEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQ 972 (1278)
Q Consensus 894 ~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~ 972 (1278)
+.+|+.+|.++...|++++|+..|++++ ..+|+++.+|..+|.++...|++++|+..+.+++...|+ +.++..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al------~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 78 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVL------KADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYI 78 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHH
Confidence 3344444444444444444444444443 334444444444444444555555555555555555553 455566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy3224 973 SAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLI 1052 (1278)
Q Consensus 973 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~ 1052 (1278)
++.++...++++.|...+.+++...|++..++..+|.++...|++++|+..|+++++.+|.++.+|..+|.++...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 66666666666677777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCCHH
Q psy3224 1053 KARSVLEKGRLRNPNCAE 1070 (1278)
Q Consensus 1053 ~A~~~l~kal~~~p~~~~ 1070 (1278)
+|+..|+++++++|+++.
T Consensus 159 ~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHhCCccCHH
Confidence 777777777777776543
No 65
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.76 E-value=3.3e-16 Score=175.53 Aligned_cols=231 Identities=13% Similarity=0.012 Sum_probs=212.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy3224 826 KSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWL----AGDVPAARGILSLAFQANPNSEEIWLAAV 901 (1278)
Q Consensus 826 ~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la 901 (1278)
...++..+..+...|++++|+..|+++++ |.++.+++.+|.++.. .+++++|+..|+++++.. ++.++..++
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg 81 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence 45678888888999999999999999998 7888999999999999 999999999999999985 789999999
Q ss_pred HHHHh----cCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCHHHHHHH
Q psy3224 902 KLESE----NNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESE----NNEYERARRLLAKARASAPTPRVMIQS 973 (1278)
Q Consensus 902 ~l~~~----~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~l 973 (1278)
.++.. .+++++|+..|++++ .. .++.++..++.++.. .+++++|+..|++++... .+..+..+
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~------~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l 152 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKAC------DL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGCTIL 152 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHH------HT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHH------Hc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-cHHHHHHH
Confidence 99999 999999999999997 33 588999999999999 999999999999999986 57889999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy3224 974 AKLEWC----LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQ----KNLLDKAHDTFSQAIKKCPHSVPLWIMLANLE 1045 (1278)
Q Consensus 974 a~~~~~----~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~ 1045 (1278)
+.++.. .+++++|+.+|+++++. .++.++..+|.++.. .+++++|+.+|+++++..| +.++..++.++
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~ 228 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 999998 99999999999999987 458899999999999 9999999999999999876 78999999999
Q ss_pred HH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy3224 1046 ER----RKMLIKARSVLEKGRLRNPNCAELWL 1073 (1278)
Q Consensus 1046 ~~----~g~~~~A~~~l~kal~~~p~~~~~~~ 1073 (1278)
.. .+++++|+.+|+++++..|.+...++
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99 99999999999999999987665543
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.75 E-value=3.7e-17 Score=198.89 Aligned_cols=213 Identities=16% Similarity=0.055 Sum_probs=202.7
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Q psy3224 842 RESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDV-PAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKA 920 (1278)
Q Consensus 842 ~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~-~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~a 920 (1278)
+++++..++++....|.+..+++.+|.++...|++ ++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 163 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA 163 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45588888888889999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhcCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHc--------CC
Q psy3224 921 RAQAGAFQANPNSEEIWLAAVKLESEN---------NEYERARRLLAKARASAPT-PRVMIQSAKLEWCL--------DN 982 (1278)
Q Consensus 921 l~~~~~l~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~--------g~ 982 (1278)
+ ..+|+ ..++..++.++... |++++|+..|++++...|+ +.+|..+|.++... |+
T Consensus 164 l------~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 164 L------THCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp H------TTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred H------hhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 8 88888 79999999999999 9999999999999999996 79999999999999 99
Q ss_pred HHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 983 LERALQLLDEAIKVFP---DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLE 1059 (1278)
Q Consensus 983 ~~~A~~~l~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~ 1059 (1278)
+++|+.+|+++++.+| +++.+|..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..+.
T Consensus 237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999 9999999999999999999999999999999999999999999999999999999988765
Q ss_pred HH
Q psy3224 1060 KG 1061 (1278)
Q Consensus 1060 ka 1061 (1278)
+.
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 67
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.73 E-value=2.3e-16 Score=171.70 Aligned_cols=209 Identities=9% Similarity=0.053 Sum_probs=149.3
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy3224 998 PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP-HSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAI 1076 (1278)
Q Consensus 998 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~ 1076 (1278)
+.++..++..|.++...|++++|+..|++++..+| .+..++..+|.++...|++++|+..|++++..+|++..+|..++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45678888899999999999999999999999888 88888888999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHH-------HHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhccc
Q psy3224 1077 RVEIRAGLKDIANTMMAKALQECPNAGIL-------WAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKN 1149 (1278)
Q Consensus 1077 ~~~~~~g~~~~A~~~~~kal~~~P~~~~~-------~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~ 1149 (1278)
.++...|++++|+..|+++++..|+++.+ |..++.++...|++++|+..|+++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al------------------- 144 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT------------------- 144 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-------------------
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH-------------------
Confidence 99999999999999999999999988844 4444444445555555555554441
Q ss_pred ccccccCccccccccchhhhhhhhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCC
Q psy3224 1150 QKCHRSGSRRCMGVKTKSVDALKKCEH--DPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGT 1227 (1278)
Q Consensus 1150 ~~A~~~~~~~~~~~~~~a~~~l~~~p~--~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~ 1227 (1278)
+.+|+ ++.+++.+|.+|+.. +...++++..+.+.+...+. .......|.
T Consensus 145 ----------------------~~~p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 195 (228)
T 4i17_A 145 ----------------------DVTSKKWKTDALYSLGVLFYNN-----GADVLRKATPLASSNKEKYA--SEKAKADAA 195 (228)
T ss_dssp ----------------------TSSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGTTTCHHHHH--HHHHHHHHH
T ss_pred ----------------------hcCCCcccHHHHHHHHHHHHHH-----HHHHHHHHHhcccCCHHHHH--HHHHHHHHH
Confidence 11222 223455555555332 23334444444444332221 222333444
Q ss_pred HHHHHHHHHHHHHhCCCCcchhhhhhh
Q psy3224 1228 EETQAEVKKRCLAAEPKHGENWCRVAK 1254 (1278)
Q Consensus 1228 ~~~A~~~l~ka~~~~P~~~~~w~~~~k 1254 (1278)
+++|...++++++++|+++.++..++.
T Consensus 196 ~~~A~~~~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 196 FKKAVDYLGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 599999999999999999888776543
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.73 E-value=3.5e-16 Score=184.88 Aligned_cols=231 Identities=10% Similarity=0.077 Sum_probs=180.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------hHH
Q psy3224 937 WLAAVKLESENNEYERARRLLAKARAS---APT----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPD-------FAK 1002 (1278)
Q Consensus 937 ~~~la~~~~~~g~~~~A~~~l~~al~~---~p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-------~~~ 1002 (1278)
++..|.++...|++++|+..|++++.. .++ ..++..+|.++...|++++|+.++++++...+. ...
T Consensus 106 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 344888999999999999999999987 233 478899999999999999999999999987443 346
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHH
Q psy3224 1003 LWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS------VPLWIMLANLEERRKMLIKARSVLEKGRL-----RN-PNCAE 1070 (1278)
Q Consensus 1003 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~l~~~~g~~~~A~~~l~kal~-----~~-p~~~~ 1070 (1278)
++..+|.++...|++++|+..|.+++...+.. ..++..+|.++...|++++|+.+|++++. .+ |....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 88899999999999999999999999876543 25788999999999999999999999999 46 77788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----cHHHHHHHHhccCCCCC---hhHHHHHHHHhccCcchhhhhhhh
Q psy3224 1071 LWLAAIRVEIRAGLKDIANTMMAKALQECPN-----AGILWAEAIFLEPRPQR---KTKSVDALKKCEHDPHVLLAVSKL 1142 (1278)
Q Consensus 1071 ~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~-----~~~~~~~~~~~~~~~~~---~~~A~~~l~k~~~~p~~~~~~~~l 1142 (1278)
++..++.++...|++++|..++++++...+. ....+..++.++...++ +.+|+..+++....|.
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~-------- 337 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYAD-------- 337 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHH--------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHH--------
Confidence 8999999999999999999999999987532 22233445666666666 5555655555522221
Q ss_pred hhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q psy3224 1143 FWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDP 1209 (1278)
Q Consensus 1143 ~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P 1209 (1278)
...++..+|.+|...|++++|..+|++++++..
T Consensus 338 ----------------------------------~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 338 ----------------------------------LEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred ----------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 112566777777777777777777777776543
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.72 E-value=5.9e-16 Score=168.35 Aligned_cols=209 Identities=14% Similarity=0.071 Sum_probs=166.3
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HH
Q psy3224 891 PNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANP-NSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PR 968 (1278)
Q Consensus 891 p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~ 968 (1278)
+.++..++..|.++...|++++|+..|++++ ...| .+..+++.+|.++...|++++|+..|++++...|+ ..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al------~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 77 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYL------KLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN 77 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHH------hccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH
Confidence 5677888888888888888888888888887 6677 77788888888888888888888888888888886 47
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH
Q psy3224 969 VMIQSAKLEWCLDNLERALQLLDEAIKVFPDFA-------KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH--SVPLWI 1039 (1278)
Q Consensus 969 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~ 1039 (1278)
+|..+|.++...|++++|+..|+++++.+|+++ .+|..+|.++...|++++|+..|+++++.+|+ ++.+|.
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 157 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALY 157 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHH
Confidence 888888888888888888888888888888877 56888888888888888888888888888888 778888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Q psy3224 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFL 1112 (1278)
Q Consensus 1040 ~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~ 1112 (1278)
.+|.++... +...++++..+.+.+...+. .......+.+++|+..|+++++..|++..++..+..+
T Consensus 158 ~l~~~~~~~-----~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 158 SLGVLFYNN-----GADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 888888654 34556777777666654433 2334456678999999999999999999887766554
No 70
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.71 E-value=4.3e-16 Score=184.15 Aligned_cols=238 Identities=13% Similarity=0.046 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhc-CCCcH
Q psy3224 862 LWLMGAKSKWLAGDVPAARGILSLAFQA---NPN---SEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQA-NPNSE 934 (1278)
Q Consensus 862 ~~~~la~~~~~~g~~~~A~~~l~~al~~---~p~---~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~-~p~~~ 934 (1278)
.++..|.++...|++++|+..|++++.. .++ ...++..+|.++...|++++|+..+.+++........ .+...
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 3455788888888888888888888876 232 3567888888888888888888888888865432222 23345
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CChH
Q psy3224 935 EIWLAAVKLESENNEYERARRLLAKARASAPT-------PRVMIQSAKLEWCLDNLERALQLLDEAIK-----VF-PDFA 1001 (1278)
Q Consensus 935 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-------~~~~~~la~~~~~~g~~~~A~~~l~~al~-----~~-p~~~ 1001 (1278)
.++..+|.++...|++++|+..|++++...+. ..++..+|.++...|++++|+.+|++++. .+ |..+
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 264 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP 264 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence 67788899999999999999999999887432 36888999999999999999999999999 56 7788
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHH
Q psy3224 1002 KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP-----HSVPLWIMLANLEERRKM---LIKARSVLEKGRLRNPNCAELWL 1073 (1278)
Q Consensus 1002 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~l~~~~g~---~~~A~~~l~kal~~~p~~~~~~~ 1073 (1278)
.++..+|.++...|++++|..+|++++...+ .....+..++.++...|+ +.+|+.++++. ...|....++.
T Consensus 265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~ 343 (383)
T 3ulq_A 265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHH
Confidence 9999999999999999999999999998743 233345668888889998 78888888776 33344556788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC
Q psy3224 1074 AAIRVEIRAGLKDIANTMMAKALQECP 1100 (1278)
Q Consensus 1074 ~l~~~~~~~g~~~~A~~~~~kal~~~P 1100 (1278)
.++.++...|++++|..++++++....
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 899999999999999999999988654
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=181.91 Aligned_cols=246 Identities=13% Similarity=0.085 Sum_probs=181.6
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhh
Q psy3224 856 CPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQA--------NPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAF 927 (1278)
Q Consensus 856 ~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l 927 (1278)
+|....++..+|.++...|++++|+.+|+++++. .|....++..++.++...|++++|+.++++++......
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4566677888888888888888888888888874 45556778888888888888888888888887544322
Q ss_pred --hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 928 --QANPNSEEIWLAAVKLESENNEYERARRLLAKARASA--------PT-PRVMIQSAKLEWCLDNLERALQLLDEAIKV 996 (1278)
Q Consensus 928 --~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--------p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 996 (1278)
...|....++..++.++...|++++|+.+|++++... |. ..++..+|.++...|++++|+.+|++++..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2245567778888888888888888888888888763 21 477888888899999999999999999887
Q ss_pred --------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CH------HHHHHHHHHHHHcCCHHH
Q psy3224 997 --------FPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH---------SV------PLWIMLANLEERRKMLIK 1053 (1278)
Q Consensus 997 --------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~------~~~~~la~l~~~~g~~~~ 1053 (1278)
.|....++..+|.++...|++++|+.+|++++...|. .. ..+..++..+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 6667788889999999999999999999999875432 22 223333444555677778
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q psy3224 1054 ARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPN 1101 (1278)
Q Consensus 1054 A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~ 1101 (1278)
|..++.++....|....+|..++.++...|++++|..+|+++++..|.
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 888899998888888899999999999999999999999999988775
No 72
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.70 E-value=3e-16 Score=198.17 Aligned_cols=175 Identities=17% Similarity=0.149 Sum_probs=153.9
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHH
Q psy3224 928 QANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMM 1006 (1278)
Q Consensus 928 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~ 1006 (1278)
..+|+++.++..+|.++...|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..|+++++++|+++.+|..
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 457888888888888888899999999999999988886 6888889999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy3224 1007 KGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKD 1086 (1278)
Q Consensus 1007 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~ 1086 (1278)
+|.++...|++++|+..|+++++++|++..+|..+|.++...|++++|+..|+++++++|+++.+|..++.++...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCc
Q psy3224 1087 IANTMMAKALQECPNA 1102 (1278)
Q Consensus 1087 ~A~~~~~kal~~~P~~ 1102 (1278)
+|.+.++++++..|+.
T Consensus 163 ~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 163 DYDERMKKLVSIVADQ 178 (723)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhH
Confidence 9999999988876553
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.69 E-value=5.7e-16 Score=195.66 Aligned_cols=174 Identities=14% Similarity=0.092 Sum_probs=137.5
Q ss_pred hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy3224 996 VFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAA 1075 (1278)
Q Consensus 996 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l 1075 (1278)
..|+++.++..+|.++..+|++++|+.+|+++++.+|++..+|..+|.++...|++++|+..|+++++++|++..+|..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nL 83 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 83 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhccccccccc
Q psy3224 1076 IRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRS 1155 (1278)
Q Consensus 1076 ~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~ 1155 (1278)
+.++...|++++|+..|+++++.+|++..
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~--------------------------------------------------- 112 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFAD--------------------------------------------------- 112 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------------------------------------------
Confidence 88888888888888888888887776543
Q ss_pred CccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHH
Q psy3224 1156 GSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVK 1235 (1278)
Q Consensus 1156 ~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l 1235 (1278)
+++.+|.+|...|++++|+.+|++|++++|+++++|.+++.++...|++++|.+.+
T Consensus 113 ------------------------a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~ 168 (723)
T 4gyw_A 113 ------------------------AHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168 (723)
T ss_dssp ------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred ------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHH
Confidence 45566777777778888888888888888888888888888888888888887777
Q ss_pred HHHHHhCCC
Q psy3224 1236 KRCLAAEPK 1244 (1278)
Q Consensus 1236 ~ka~~~~P~ 1244 (1278)
++++++.|+
T Consensus 169 ~kal~l~~~ 177 (723)
T 4gyw_A 169 KKLVSIVAD 177 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhChh
Confidence 777776553
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=3.1e-16 Score=178.51 Aligned_cols=173 Identities=16% Similarity=0.121 Sum_probs=142.1
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Q psy3224 929 ANPNSEEIWLAAVKLESENNEYERARRLLAKARAS--------APT-PRVMIQSAKLEWCLDNLERALQLLDEAIKV--- 996 (1278)
Q Consensus 929 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~--- 996 (1278)
..|....++..++.++...|++++|+.+|++++.. .|. ..++..+|.++...|++++|+.+|++++..
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 35666777778888888888888888888888874 222 477888888888888888888888888876
Q ss_pred -----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 997 -----FPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKC--------PHSVPLWIMLANLEERRKMLIKARSVLEKGRL 1063 (1278)
Q Consensus 997 -----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~ 1063 (1278)
.|....++..+|.++...|++++|+.+|++++... |....++..+|.++...|++++|+.+|++++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35567888889999999999999999999998874 44567788889999999999999999999998
Q ss_pred h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q psy3224 1064 R--------NPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPN 1101 (1278)
Q Consensus 1064 ~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~ 1101 (1278)
. .|....++..++.++...|++++|..++++++...|.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 227 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE 227 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 7 5666678889999999999999999999999886543
No 75
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.68 E-value=5.3e-15 Score=166.56 Aligned_cols=233 Identities=14% Similarity=0.156 Sum_probs=134.2
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCHHHH
Q psy3224 984 ERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN--LLDKAHDTFSQAIKKCPHSVPLWIMLANLE----ERR---KMLIKA 1054 (1278)
Q Consensus 984 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~l~----~~~---g~~~~A 1054 (1278)
++|+.++.++|.++|++..+|...+.++...+ .+++++.++..++..+|++..+|...+.++ ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 45555555556666655556665555555555 555666666666666665555555555555 434 455556
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHHCCCcHHHHHHHHhccCCCCC------hhHHHHHH
Q psy3224 1055 RSVLEKGRLRNPNCAELWLAAIRVEIRAGLKD--IANTMMAKALQECPNAGILWAEAIFLEPRPQR------KTKSVDAL 1126 (1278)
Q Consensus 1055 ~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~--~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~------~~~A~~~l 1126 (1278)
+.++++++..+|.+..+|...+.++...|.++ ++++.+.++++.+|.+..+|..+..++...++ ++++++.+
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 66666666666666666655555555555555 55556666666666666566555555444433 22222222
Q ss_pred HHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHH
Q psy3224 1127 KKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQ-KCREWFNRTV 1205 (1278)
Q Consensus 1127 ~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~-~A~~~~~kal 1205 (1278)
. .++..+|+|..+|+.++.++...|+.. ....++++++
T Consensus 210 ~-----------------------------------------~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~ 248 (306)
T 3dra_A 210 K-----------------------------------------DKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFV 248 (306)
T ss_dssp H-----------------------------------------HHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTE
T ss_pred H-----------------------------------------HHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 2 223344555556666666665555533 3444555555
Q ss_pred hhC---CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCCCcchhhhhhhccc
Q psy3224 1206 KID---PDLGDAWAYFYKFEIINGTEETQAEVKKRCLA-AEPKHGENWCRVAKNVS 1257 (1278)
Q Consensus 1206 ~~~---P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~-~~P~~~~~w~~~~k~~~ 1257 (1278)
.+. |.++.++..++.++.+.|+.++|.++++++.+ .+|-....|...++.+.
T Consensus 249 ~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l~ 304 (306)
T 3dra_A 249 DLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKLT 304 (306)
T ss_dssp EGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTCC
T ss_pred hccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhcc
Confidence 554 66666777777777777777777777777765 67777777766555443
No 76
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=6.8e-17 Score=186.97 Aligned_cols=306 Identities=14% Similarity=0.040 Sum_probs=143.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHH
Q psy3224 758 NQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEK 837 (1278)
Q Consensus 758 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~ 837 (1278)
..|++++|..++++. +++.+|..+|..+...|++++|+..|.++ + +. ..|...+....
T Consensus 15 ~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika----~-D~------------~~y~~V~~~ae 72 (449)
T 1b89_A 15 HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----D-DP------------SSYMEVVQAAN 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC----C-CH------------HHHHHHHHHHH
Confidence 446677777777766 22357777777777777777777777653 1 11 12344444445
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q psy3224 838 NHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLL 917 (1278)
Q Consensus 838 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l 917 (1278)
..|++++|+.+++.+++..++ +.+...++.+|.+.|++.++.+++. .|+ ...|..+|..+...|.+++|+.+|
T Consensus 73 ~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn-~~a~~~IGd~~~~~g~yeeA~~~Y 145 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAELEEFIN-----GPN-NAHIQQVGDRCYDEKMYDAAKLLY 145 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-----CC-----------------CTTTHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCc-HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 567777788777777765333 5667777778888888888777774 243 458888888888888888888888
Q ss_pred HHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 918 AKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVF 997 (1278)
Q Consensus 918 ~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 997 (1278)
.++ ..|..++.++.+.|++++|++.+.++ .++.+|...+..+...|+++.|..+... +..+
T Consensus 146 ~~a--------------~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ 206 (449)
T 1b89_A 146 NNV--------------SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH 206 (449)
T ss_dssp HHT--------------TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC
T ss_pred HHh--------------hhHHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC
Confidence 764 36778888888888888888888888 3678888888888888888888766664 3344
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC-----CCHH
Q psy3224 998 PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER--RKMLIKARSVLEKGRLRNP-----NCAE 1070 (1278)
Q Consensus 998 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~--~g~~~~A~~~l~kal~~~p-----~~~~ 1070 (1278)
|+. ...++.+|.+.|.+++|+.+++.++..++.+..+|..++.++.+ .++..+.++.|...+.+.| .+..
T Consensus 207 ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred Hhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 443 44577788888888888888888888888888888888877764 4566677777776666666 6677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH------------CCCcHHHHHHHHhccC
Q psy3224 1071 LWLAAIRVEIRAGLKDIANTMMAKALQE------------CPNAGILWAEAIFLEP 1114 (1278)
Q Consensus 1071 ~~~~l~~~~~~~g~~~~A~~~~~kal~~------------~P~~~~~~~~~~~~~~ 1114 (1278)
+|..+..+|...++++.|...+-..... .+.+.++++..+.+|.
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 7888888888888888887755433222 3445566665555553
No 77
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.66 E-value=1.8e-14 Score=162.19 Aligned_cols=232 Identities=13% Similarity=0.106 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----Hhc---CcHHHH
Q psy3224 843 ESLETLLQKAVAHCPKSEVLWLMGAKSKWLAG--DVPAARGILSLAFQANPNSEEIWLAAVKLE----SEN---NEYERA 913 (1278)
Q Consensus 843 ~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g--~~~~A~~~l~~al~~~p~~~~~~~~la~l~----~~~---g~~~~A 913 (1278)
++|+.++.+++..+|.+..+|...+.++...+ .+++++..+..++..+|++..+|...+.+. ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 56888888888888888888888888887777 888888888888888888888887777766 333 444455
Q ss_pred HHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH--HHHHHHH
Q psy3224 914 RRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLE--RALQLLD 991 (1278)
Q Consensus 914 ~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~--~A~~~l~ 991 (1278)
+.++.+++ ..+|.+..+|...+.+ +...+.++ +++.+++
T Consensus 130 L~~~~~~l------~~~pkny~aW~~R~~v---------------------------------l~~l~~~~~~~EL~~~~ 170 (306)
T 3dra_A 130 FDILEAML------SSDPKNHHVWSYRKWL---------------------------------VDTFDLHNDAKELSFVD 170 (306)
T ss_dssp HHHHHHHH------HHCTTCHHHHHHHHHH---------------------------------HHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHH------HhCCCCHHHHHHHHHH---------------------------------HHHhcccChHHHHHHHH
Confidence 55555544 4445554444444444 44444444 5666666
Q ss_pred HHHHhCCChHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHh
Q psy3224 992 EAIKVFPDFAKLWMMKGQIEEQKNL------LDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIK-ARSVLEKGRLR 1064 (1278)
Q Consensus 992 ~al~~~p~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~-A~~~l~kal~~ 1064 (1278)
++++.+|.+..+|...+.++...+. ++++++++.+++..+|.+..+|..++.++...|+... ...++++++.+
T Consensus 171 ~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 250 (306)
T 3dra_A 171 KVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL 250 (306)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG
T ss_pred HHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 6666666666666666666666555 6666666777777777776677666666666665333 44455555555
Q ss_pred C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCcHHHHHHHHhcc
Q psy3224 1065 N---PNCAELWLAAIRVEIRAGLKDIANTMMAKALQ-ECPNAGILWAEAIFLE 1113 (1278)
Q Consensus 1065 ~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~-~~P~~~~~~~~~~~~~ 1113 (1278)
. |.++.++..++.++.+.|+.++|+++|..+.+ .+|-....|...+..+
T Consensus 251 ~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~l 303 (306)
T 3dra_A 251 EKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISKL 303 (306)
T ss_dssp GGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHTC
T ss_pred cCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhhc
Confidence 4 56666666666666666777777777777665 5676666666655543
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.66 E-value=2.4e-14 Score=168.25 Aligned_cols=312 Identities=15% Similarity=0.104 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHH
Q psy3224 862 LWLMGAKSKWLAGDVPAARGILSLAFQANPNSE-----EIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEI 936 (1278)
Q Consensus 862 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-----~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~ 936 (1278)
++...|.++...|++++|+..+++++...|... .++..++.++...|++++|+..+++++...+..........+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344555556666666666666666666555431 134455556666666666666666665332211000011223
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----hHH
Q psy3224 937 WLAAVKLESENNEYERARRLLAKARASA--------PT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPD-----FAK 1002 (1278)
Q Consensus 937 ~~~la~~~~~~g~~~~A~~~l~~al~~~--------p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-----~~~ 1002 (1278)
+..++.++...|++++|+..|++++... |. ..++..++.++...|++++|..++++++...+. ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 4456666667777777777777766653 11 245566777777777777777777777776654 245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHH
Q psy3224 1003 LWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH--SVPLWI-----MLANLEERRKMLIKARSVLEKGRLRNPNC----AEL 1071 (1278)
Q Consensus 1003 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~-----~la~l~~~~g~~~~A~~~l~kal~~~p~~----~~~ 1071 (1278)
++..++.++...|++++|...+++++...+. .+..|. ..+.++...|++++|..++++++...|.. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 6777788888888888888888888765322 211222 23445667888888888888887766543 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhccccc
Q psy3224 1072 WLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQK 1151 (1278)
Q Consensus 1072 ~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~ 1151 (1278)
+..++.++...|++++|...+++++...+..+..+.
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~-------------------------------------------- 291 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD-------------------------------------------- 291 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--------------------------------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhh--------------------------------------------
Confidence 567777888888888888888877765432110000
Q ss_pred ccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHH
Q psy3224 1152 CHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQ 1231 (1278)
Q Consensus 1152 A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A 1231 (1278)
...++..+|.++...|++++|..+|++++.+.+..+. ..++...| ...
T Consensus 292 -------------------------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~g~-----~~~~~~~g--~~~ 339 (373)
T 1hz4_A 292 -------------------------LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF-----ISHFVIEG--EAM 339 (373)
T ss_dssp -------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCC-----CHHHHTTH--HHH
T ss_pred -------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccH-----HHHHHHcc--HHH
Confidence 0116677899999999999999999999988665332 23344555 667
Q ss_pred HHHHHHHHHhCCCCcchhh
Q psy3224 1232 AEVKKRCLAAEPKHGENWC 1250 (1278)
Q Consensus 1232 ~~~l~ka~~~~P~~~~~w~ 1250 (1278)
..++++++...|. .+.|.
T Consensus 340 ~~ll~~~~~~~~~-~~~~~ 357 (373)
T 1hz4_A 340 AQQLRQLIQLNTL-PELEQ 357 (373)
T ss_dssp HHHHHHHHHTTCS-CHHHH
T ss_pred HHHHHHHHhCCCC-chHHH
Confidence 7888999888886 33443
No 79
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.66 E-value=1.6e-16 Score=183.82 Aligned_cols=312 Identities=13% Similarity=0.084 Sum_probs=159.1
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHH
Q psy3224 837 KNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRL 916 (1278)
Q Consensus 837 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~ 916 (1278)
...|+.++|.+++++. +.+.+|..+|..+...|++++|++.|.++ .++..|...+..+...|++++|+.+
T Consensus 14 ~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4567888899999888 33469999999999999999999999874 3566888889999999999999999
Q ss_pred HHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 917 LAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKV 996 (1278)
Q Consensus 917 l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 996 (1278)
++.++ +. ..++.+...++.+|.+.|++.++..++. .|+...|..+|..+...|.+++|+.+|.++
T Consensus 84 l~~ar------k~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 84 LQMAR------KK-ARESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp --------------------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT---
T ss_pred HHHHH------Hh-CccchhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 99886 43 3336778889999999999999998885 477789999999999999999999999977
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy3224 997 FPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAI 1076 (1278)
Q Consensus 997 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~ 1076 (1278)
..|..++.++.+.|++++|++.|.++ .++.+|..+...+...|+++.|...... +..+| +-...++
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~a---d~l~~lv 214 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHA---DELEELI 214 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCH---HHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCH---hhHHHHH
Confidence 47899999999999999999999999 4789999999999999999999777665 33444 3345688
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCC--CCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccc
Q psy3224 1077 RVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPR--PQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHR 1154 (1278)
Q Consensus 1077 ~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~--~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~ 1154 (1278)
.+|.+.|.+++|+.++++++...+.+..+|..++.++.+ .++..+.++.|....+-|.+.-+..
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~-------------- 280 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAE-------------- 280 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHH--------------
T ss_pred HHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHH--------------
Confidence 899999999999999999999999999999999887754 5566666666655444444222221
Q ss_pred cCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------------CCCChhHHHHHHHHH
Q psy3224 1155 SGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKI------------DPDLGDAWAYFYKFE 1222 (1278)
Q Consensus 1155 ~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~------------~P~~~d~~~~l~~~~ 1222 (1278)
++..|..+..+|...++++.|....-..... .+.|.++++....||
T Consensus 281 ----------------------~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fy 338 (449)
T 1b89_A 281 ----------------------QAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFY 338 (449)
T ss_dssp ----------------------TTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHH
Confidence 2226788888888899999888765544433 567788888888887
Q ss_pred H
Q psy3224 1223 I 1223 (1278)
Q Consensus 1223 ~ 1223 (1278)
.
T Consensus 339 l 339 (449)
T 1b89_A 339 L 339 (449)
T ss_dssp H
T ss_pred H
Confidence 7
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.65 E-value=2.4e-14 Score=168.85 Aligned_cols=231 Identities=10% Similarity=0.052 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------hH
Q psy3224 936 IWLAAVKLESENNEYERARRLLAKARASA---PT----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPD-------FA 1001 (1278)
Q Consensus 936 ~~~~la~~~~~~g~~~~A~~~l~~al~~~---p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-------~~ 1001 (1278)
.++..|..+...|++++|+..|++++... ++ ..++..+|.++...|+++.|+.++++++...+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 45677888899999999999999999874 22 478889999999999999999999999987542 25
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHH
Q psy3224 1002 KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH------SVPLWIMLANLEERRKMLIKARSVLEKGRL-----RNPNCAE 1070 (1278)
Q Consensus 1002 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~l~~~~g~~~~A~~~l~kal~-----~~p~~~~ 1070 (1278)
.++..+|.++...|++++|+..|.+++...+. ...++..+|.++...|++++|+.+|++++. .+|....
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 67889999999999999999999999986432 245778899999999999999999999999 7787788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-----cHHHHHHHHhccCCCCC---hhHHHHHHHHhccCcchhhhhhhh
Q psy3224 1071 LWLAAIRVEIRAGLKDIANTMMAKALQECPN-----AGILWAEAIFLEPRPQR---KTKSVDALKKCEHDPHVLLAVSKL 1142 (1278)
Q Consensus 1071 ~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~-----~~~~~~~~~~~~~~~~~---~~~A~~~l~k~~~~p~~~~~~~~l 1142 (1278)
++..++.++...|++++|..++++++...+. ....+..+..++...++ +.+|+..+++....|.
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~-------- 334 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAY-------- 334 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHH--------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhH--------
Confidence 8999999999999999999999999998543 33445556667777777 6677777766432222
Q ss_pred hhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy3224 1143 FWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKID 1208 (1278)
Q Consensus 1143 ~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~ 1208 (1278)
...++..+|.+|...|++++|..+|+++++..
T Consensus 335 ----------------------------------~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 335 ----------------------------------IEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 12267889999999999999999999998753
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.64 E-value=2.3e-14 Score=168.92 Aligned_cols=237 Identities=12% Similarity=0.009 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhc-CCCcH
Q psy3224 862 LWLMGAKSKWLAGDVPAARGILSLAFQANP---N---SEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQA-NPNSE 934 (1278)
Q Consensus 862 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p---~---~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~-~p~~~ 934 (1278)
.++..|..+...|++++|+..|++++...+ + ...++..+|.++...|+++.|+..+.+++........ .+...
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567889999999999999999999998643 2 3568899999999999999999999999866532221 12346
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCChHH
Q psy3224 935 EIWLAAVKLESENNEYERARRLLAKARASAP---T----PRVMIQSAKLEWCLDNLERALQLLDEAIK-----VFPDFAK 1002 (1278)
Q Consensus 935 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p---~----~~~~~~la~~~~~~g~~~~A~~~l~~al~-----~~p~~~~ 1002 (1278)
.++..+|.++...|++++|+..|++++...+ + ..++..+|.++...|++++|+.+|++++. .+|..+.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 6788999999999999999999999998642 2 46888999999999999999999999999 7888899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHH
Q psy3224 1003 LWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH-----SVPLWIMLANLEERRKM---LIKARSVLEKGRLRNPNCAELWLA 1074 (1278)
Q Consensus 1003 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~l~~~~g~---~~~A~~~l~kal~~~p~~~~~~~~ 1074 (1278)
++..+|.++...|++++|..++++++...+. ....+..++.++...++ +.+|+.++++. ...|....++..
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 341 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHH
Confidence 9999999999999999999999999998543 34455667778888888 88888888762 223344567788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Q psy3224 1075 AIRVEIRAGLKDIANTMMAKALQEC 1099 (1278)
Q Consensus 1075 l~~~~~~~g~~~~A~~~~~kal~~~ 1099 (1278)
++.++...|++++|..+|+++++..
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
No 82
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.63 E-value=1.1e-14 Score=161.89 Aligned_cols=179 Identities=16% Similarity=0.103 Sum_probs=125.4
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---hH
Q psy3224 929 ANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPD---FA 1001 (1278)
Q Consensus 929 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~ 1001 (1278)
..|.++..++.+|..+...|++++|+..|++++...|. +.+++.+|.++...|++++|+..|++++..+|+ .+
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 34555556666666666666666666666666665553 455666666666666666666666666665552 24
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHHH
Q psy3224 1002 KLWMMKGQIEEQ--------KNLLDKAHDTFSQAIKKCPHSVPLW-----------------IMLANLEERRKMLIKARS 1056 (1278)
Q Consensus 1002 ~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~-----------------~~la~l~~~~g~~~~A~~ 1056 (1278)
.+++.+|.++.. .|++++|+..|++++...|++..++ +.+|.++...|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 556666666666 6666666666666666666554444 788999999999999999
Q ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHCCCcHHHHH
Q psy3224 1057 VLEKGRLRNPN---CAELWLAAIRVEIRA----------GLKDIANTMMAKALQECPNAGILWA 1107 (1278)
Q Consensus 1057 ~l~kal~~~p~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~kal~~~P~~~~~~~ 1107 (1278)
.|++++...|+ .+.++..++.++... |++++|+..|+++++.+|+++.+..
T Consensus 170 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 170 TYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 99999999998 456888999988876 8999999999999999999865543
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.63 E-value=2.7e-15 Score=170.11 Aligned_cols=244 Identities=12% Similarity=0.024 Sum_probs=172.1
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy3224 845 LETLLQKAVAHCPKSEVLWLMGAKSKWLA---GDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKAR 921 (1278)
Q Consensus 845 A~~~~~~al~~~P~~~~~~~~la~~~~~~---g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al 921 (1278)
|..++.++-+..+.....| . ++ .. +++++|...|.++ +.++...|++++|+..|.+++
T Consensus 4 a~~~~~~a~k~~~~~~~~~-~---~~-~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 4 PVELLKRAEKKGVPSSGFM-K---LF-SGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAA 64 (292)
T ss_dssp HHHHHHHHHHHSSCCCTHH-H---HH-SCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCCcc-h---hc-CCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHH
Confidence 6777778877776543322 1 11 22 2488888888887 456777888888888888887
Q ss_pred HhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q psy3224 922 AQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-------PRVMIQSAKLEWCL-DNLERALQLLDEA 993 (1278)
Q Consensus 922 ~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-------~~~~~~la~~~~~~-g~~~~A~~~l~~a 993 (1278)
.........+....+|..+|.++...|++++|+.+|++++...+. ..++..+|.++... |++++|+.+|+++
T Consensus 65 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A 144 (292)
T 1qqe_A 65 DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA 144 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 554322222233567788888888888888888888888887542 35777888888885 8888888888888
Q ss_pred HHhCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 994 IKVFPDF------AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVP-------LWIMLANLEERRKMLIKARSVLEK 1060 (1278)
Q Consensus 994 l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~l~~~~g~~~~A~~~l~k 1060 (1278)
+...|.. ..++..+|.++...|++++|+.+|++++...|.+.. ++..++.++...|++++|+..|++
T Consensus 145 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8887643 467788888888888888888888888888877543 567788888888888888888888
Q ss_pred HHHhCCCCHHH-----HHHHHHHHH--HcCCHHHHHHHHHHHHHHCCCcHHHHH
Q psy3224 1061 GRLRNPNCAEL-----WLAAIRVEI--RAGLKDIANTMMAKALQECPNAGILWA 1107 (1278)
Q Consensus 1061 al~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~kal~~~P~~~~~~~ 1107 (1278)
++.++|+.... +..++..+. ..+++++|+..|.+++..+|....++.
T Consensus 225 al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 225 GQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp GGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 88888876543 233334332 345688888888777777776655554
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.63 E-value=9.8e-15 Score=162.41 Aligned_cols=211 Identities=12% Similarity=-0.002 Sum_probs=154.3
Q ss_pred HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhc
Q psy3224 853 VAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNS---EEIWLAAVKLESENNEYERARRLLAKARAQAGAFQA 929 (1278)
Q Consensus 853 l~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~ 929 (1278)
....|.++..++.+|..+...|++++|+..|++++...|++ ..+++.+|.++...|++++|+..|++++ ..
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l------~~ 81 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFI------QI 81 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHH------HH
Confidence 45677888888899999989999999999999999888887 7888888888888888888888888887 55
Q ss_pred CC---CcHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 930 NP---NSEEIWLAAVKLESE--------NNEYERARRLLAKARASAPTP-RVMIQSAKLEWCLDNLERALQLLDEAIKVF 997 (1278)
Q Consensus 930 ~p---~~~~~~~~la~~~~~--------~g~~~~A~~~l~~al~~~p~~-~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 997 (1278)
.| ....+++.+|.++.. .|++++|+..|++++...|+. .++..+..+... .
T Consensus 82 ~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~-----------------~ 144 (261)
T 3qky_A 82 YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL-----------------R 144 (261)
T ss_dssp CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH-----------------H
T ss_pred CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH-----------------H
Confidence 55 446677888888888 888888888888888887752 222211111110 0
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHh
Q psy3224 998 PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH---SVPLWIMLANLEERR----------KMLIKARSVLEKGRLR 1064 (1278)
Q Consensus 998 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~l~~~~----------g~~~~A~~~l~kal~~ 1064 (1278)
+.....++.+|.++...|++++|+..|+++++..|+ .+.++..+|.++... |++++|+..|++++..
T Consensus 145 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 145 AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 111234678888888888888888888888888887 456788888888866 8888899999999888
Q ss_pred CCCCHHH---HHHHHHHHHHcCCHH
Q psy3224 1065 NPNCAEL---WLAAIRVEIRAGLKD 1086 (1278)
Q Consensus 1065 ~p~~~~~---~~~l~~~~~~~g~~~ 1086 (1278)
+|+++.+ ...+..++...++++
T Consensus 225 ~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 225 FPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp CTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHhh
Confidence 8888643 333444554444443
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.62 E-value=2.8e-15 Score=170.00 Aligned_cols=227 Identities=11% Similarity=0.036 Sum_probs=176.1
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ChHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 949 EYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFP------DFAKLWMMKGQIEEQKNLLDKAHD 1022 (1278)
Q Consensus 949 ~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~ 1022 (1278)
++++|...|.++ +.++...|++++|+..|.+++...+ ....++..+|.+|...|++++|+.
T Consensus 32 ~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 98 (292)
T 1qqe_A 32 KFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (292)
T ss_dssp HHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 488888888876 5567788999999999999988743 125788889999999999999999
Q ss_pred HHHHHHHhCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHH
Q psy3224 1023 TFSQAIKKCPHS------VPLWIMLANLEERR-KMLIKARSVLEKGRLRNPNC------AELWLAAIRVEIRAGLKDIAN 1089 (1278)
Q Consensus 1023 ~~~~al~~~p~~------~~~~~~la~l~~~~-g~~~~A~~~l~kal~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 1089 (1278)
+|++++...|.. ..++..+|.++... |++++|+.+|++++.+.|.+ ..++..++.++...|++++|+
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 178 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS 178 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 999999887653 45788889999986 99999999999999988754 456788899999999999999
Q ss_pred HHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhh
Q psy3224 1090 TMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVD 1169 (1278)
Q Consensus 1090 ~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~ 1169 (1278)
.+|++++...|++..... .
T Consensus 179 ~~~~~al~~~~~~~~~~~------------~------------------------------------------------- 197 (292)
T 1qqe_A 179 DIYSKLIKSSMGNRLSQW------------S------------------------------------------------- 197 (292)
T ss_dssp HHHHHHHHTTSSCTTTGG------------G-------------------------------------------------
T ss_pred HHHHHHHHHHhcCCcccH------------H-------------------------------------------------
Confidence 999999998887542210 0
Q ss_pred hhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhH-----HHHHHHHHH--HhCCHHHHHHHHHHHHHhC
Q psy3224 1170 ALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDA-----WAYFYKFEI--INGTEETQAEVKKRCLAAE 1242 (1278)
Q Consensus 1170 ~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~-----~~~l~~~~~--~~G~~~~A~~~l~ka~~~~ 1242 (1278)
...+++.+|.++...|++++|+.+|+++++++|+++.. +..+...+. ..+++++|...+++++.++
T Consensus 198 -------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 198 -------LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp -------HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred -------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccH
Confidence 00167788999999999999999999999999988764 334444443 4567888999999999999
Q ss_pred CCCcchhhhhhhcc
Q psy3224 1243 PKHGENWCRVAKNV 1256 (1278)
Q Consensus 1243 P~~~~~w~~~~k~~ 1256 (1278)
|.+..+|.++.+.+
T Consensus 271 ~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 271 KWKITILNKIKESI 284 (292)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99988898888765
No 86
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.62 E-value=1e-13 Score=162.83 Aligned_cols=273 Identities=13% Similarity=0.044 Sum_probs=222.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q psy3224 828 IWLRAAYFEKNHGTRESLETLLQKAVAHCPKSE-----VLWLMGAKSKWLAGDVPAARGILSLAFQANPNS------EEI 896 (1278)
Q Consensus 828 ~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~-----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~ 896 (1278)
++...+.+....|++++|+..+++++...|... .++..+|.++...|++++|+..+.+++...|.. ..+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 455566777889999999999999999887543 257788999999999999999999999876543 234
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------HH
Q psy3224 897 WLAAVKLESENNEYERARRLLAKARAQAGAFQAN--PNSEEIWLAAVKLESENNEYERARRLLAKARASAPT------PR 968 (1278)
Q Consensus 897 ~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~------~~ 968 (1278)
+..++.++...|++++|+..+++++......... |....++..++.++...|++++|...+++++...+. ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 6788999999999999999999998665432222 445667788999999999999999999999998764 36
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--hHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHH
Q psy3224 969 VMIQSAKLEWCLDNLERALQLLDEAIKVFPD--FAKLWM-----MKGQIEEQKNLLDKAHDTFSQAIKKCPHS----VPL 1037 (1278)
Q Consensus 969 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~~~~-----~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~ 1037 (1278)
.+..++.++...|++++|..++++++...+. .+..+. ..+.++...|++++|..++.+++...|.. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 7888999999999999999999999886432 211222 34456889999999999999998776643 335
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Q psy3224 1038 WIMLANLEERRKMLIKARSVLEKGRLRNPNC------AELWLAAIRVEIRAGLKDIANTMMAKALQECP 1100 (1278)
Q Consensus 1038 ~~~la~l~~~~g~~~~A~~~l~kal~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P 1100 (1278)
+..++.++...|++++|...+++++...+.. ..++..++.++...|++++|...+.+++...+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 6788999999999999999999998875421 24677888899999999999999999998764
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.61 E-value=2.7e-14 Score=148.44 Aligned_cols=170 Identities=15% Similarity=0.061 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy3224 934 EEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEE 1012 (1278)
Q Consensus 934 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 1012 (1278)
...+..++.++...|++++|+..|++++...|. ..++..++.++...|++++|+.++++++...|.++.++..+|.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 455667777777788888888888877777664 5777778888888888888888888888888888888888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 1013 QKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMM 1092 (1278)
Q Consensus 1013 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 1092 (1278)
..|++++|..+|++++...|.++.++..++.++...|++++|+.+|++++...|.++.++..++.++...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHCCCcH
Q psy3224 1093 AKALQECPNAG 1103 (1278)
Q Consensus 1093 ~kal~~~P~~~ 1103 (1278)
+++++..|++.
T Consensus 168 ~~~~~~~~~~~ 178 (186)
T 3as5_A 168 KKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHCCC
T ss_pred HHHHHcCCCch
Confidence 88888777654
No 88
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.60 E-value=2e-15 Score=152.63 Aligned_cols=145 Identities=12% Similarity=0.027 Sum_probs=94.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy3224 973 SAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLI 1052 (1278)
Q Consensus 973 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~ 1052 (1278)
+|.++...|++++|+..+++++...|+++..++.+|.+|...|++++|+..|+++++.+|+++.+|..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 34555556666666666666666666666666667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHHCCCcHHHHHHHHhccCCCC
Q psy3224 1053 KARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTM-MAKALQECPNAGILWAEAIFLEPRPQ 1117 (1278)
Q Consensus 1053 ~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~kal~~~P~~~~~~~~~~~~~~~~~ 1117 (1278)
+|+..|+++++++|+++.+|..++.++...|++++|... ++++++.+|+++.+|...+.++...|
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 777777777777777777667777766666666554443 46677777777666665555554443
No 89
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.59 E-value=1.6e-14 Score=183.46 Aligned_cols=186 Identities=11% Similarity=-0.021 Sum_probs=139.4
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhh
Q psy3224 855 HCPKSEVLWLMGAKSKWLAGDVPAARGILSLAF--------QANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGA 926 (1278)
Q Consensus 855 ~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al--------~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~ 926 (1278)
.+|.++.+++..+ ...|++++|+..|++++ +.+|++..+++.++.++...|++++|+..|++++
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al----- 460 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLA----- 460 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH-----
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHh-----
Confidence 4566666666555 56777888888888887 7777777777778877777777777777777776
Q ss_pred hhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHH
Q psy3224 927 FQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWM 1005 (1278)
Q Consensus 927 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 1005 (1278)
..+|++..+|+.+|.++...|++++|+..|+++++.+|+ ..+|+.+|.++...|++++ +..|+++++.+|++..+|+
T Consensus 461 -~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~ 538 (681)
T 2pzi_A 461 -ERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF 538 (681)
T ss_dssp -HHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH
T ss_pred -ccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH
Confidence 667777777777777777777777777777777777775 5777777777777777777 7788888888887778888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy3224 1006 MKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKM 1050 (1278)
Q Consensus 1006 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~ 1050 (1278)
.+|.++...|++++|+..|+++++.+|++..+|..++.++...+.
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 888888888888888888888888888777777777777765554
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.58 E-value=6.4e-14 Score=150.07 Aligned_cols=176 Identities=14% Similarity=0.040 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMM----------------KGQIEEQKNLLDKAHDTFSQAIKKC 1031 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~~~ 1031 (1278)
..++..|..+...|++++|+.+|++++..+|+++.+|+. +|.++...|++++|+..|+++++.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 344555666666666666666666666666666666666 6666666666666666666666666
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHCCCcHHHHHHH
Q psy3224 1032 PHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLK--DIANTMMAKALQECPNAGILWAEA 1109 (1278)
Q Consensus 1032 p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~--~~A~~~~~kal~~~P~~~~~~~~~ 1109 (1278)
|+++.+|..+|.++...|++++|+..|++++.++|+++.+|..++.++...|.. ..+...+.+++. |.
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~-------- 154 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PT-------- 154 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CC--------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CC--------
Confidence 666666666666666666666666666666666666666666666665444322 122222222211 10
Q ss_pred HhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHH
Q psy3224 1110 IFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFW 1189 (1278)
Q Consensus 1110 ~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~ 1189 (1278)
|. ..+++.+|.++.
T Consensus 155 -----------------------~~-------------------------------------------~~a~~~~g~~~~ 168 (208)
T 3urz_A 155 -----------------------KM-------------------------------------------QYARYRDGLSKL 168 (208)
T ss_dssp -----------------------HH-------------------------------------------HHHHHHHHHHHH
T ss_pred -----------------------ch-------------------------------------------hHHHHHHHHHHH
Confidence 10 015667788888
Q ss_pred hcCCHHHHHHHHHHHHhhCCCChhHHHHHHH
Q psy3224 1190 CENKNQKCREWFNRTVKIDPDLGDAWAYFYK 1220 (1278)
Q Consensus 1190 ~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~ 1220 (1278)
..|++++|+.+|+++++++|+. .+...+.+
T Consensus 169 ~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~ 198 (208)
T 3urz_A 169 FTTRYEKARNSLQKVILRFPST-EAQKTLDK 198 (208)
T ss_dssp HHHTHHHHHHHHHHHTTTSCCH-HHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCH-HHHHHHHH
Confidence 8999999999999999999974 34333433
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.58 E-value=1.2e-14 Score=184.59 Aligned_cols=185 Identities=11% Similarity=0.023 Sum_probs=129.4
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 929 ANPNSEEIWLAAVKLESENNEYERARRLLAKAR--------ASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPD 999 (1278)
Q Consensus 929 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al--------~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 999 (1278)
.+|.++.+++..+ ...|++++|+..|++++ ..+|+ ..+++.+|.++...|++++|+..|+++++.+|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 3455554444444 35666777777777766 55554 467777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy3224 1000 FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVE 1079 (1278)
Q Consensus 1000 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~ 1079 (1278)
++.+|+.+|.++...|++++|+..|+++++.+|++..+|..+|.++...|++++ +..|+++++++|++..+|+.++.++
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~ 544 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR 544 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777 7777777777777777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCC
Q psy3224 1080 IRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQ 1117 (1278)
Q Consensus 1080 ~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~ 1117 (1278)
...|++++|+..|+++++..|++..+|..++.++...+
T Consensus 545 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 545 SAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccC
Confidence 77777777777777777777777777777776665433
No 92
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.58 E-value=1e-13 Score=143.93 Aligned_cols=168 Identities=17% Similarity=0.118 Sum_probs=108.1
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHH
Q psy3224 896 IWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSA 974 (1278)
Q Consensus 896 ~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la 974 (1278)
.+..++.++...|++++|+..+++++ ...|.+..++..++.++...|++++|+..+++++...|. ..++..++
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 83 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVY------DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTC------CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH------HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 34444444444444444444444443 344444444555555555555555555555555555553 46666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy3224 975 KLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKA 1054 (1278)
Q Consensus 975 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A 1054 (1278)
.++...|++++|..++++++...|.++.++..+|.++...|++++|..+|++++...|.++.++..++.++...|++++|
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 66666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHhCCCCH
Q psy3224 1055 RSVLEKGRLRNPNCA 1069 (1278)
Q Consensus 1055 ~~~l~kal~~~p~~~ 1069 (1278)
..+|++++...|++.
T Consensus 164 ~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 164 LPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHcCCCch
Confidence 777777777766553
No 93
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.57 E-value=5.6e-15 Score=149.32 Aligned_cols=145 Identities=15% Similarity=0.093 Sum_probs=118.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHH
Q psy3224 940 AVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLD 1018 (1278)
Q Consensus 940 la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~ 1018 (1278)
+|.++...|++++|+..+++++...|. +..++.+|.+|...|++++|+.+|+++++.+|+++.+|..+|.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 455566677788888888888777665 5677788888888888888888888899999988999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy3224 1019 KAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARS-VLEKGRLRNPNCAELWLAAIRVEIRAGL 1084 (1278)
Q Consensus 1019 ~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~-~l~kal~~~p~~~~~~~~l~~~~~~~g~ 1084 (1278)
+|+..|+++++.+|+++.+|..+|.++...|++++|.. +++++++++|+++.+|...+.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999988899999998888888876655 4588999999998888888888777664
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.56 E-value=1.2e-13 Score=150.04 Aligned_cols=210 Identities=13% Similarity=0.020 Sum_probs=156.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHH
Q psy3224 966 TPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF---AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVP---LWI 1039 (1278)
Q Consensus 966 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 1039 (1278)
++..++..|..+...|++++|+..|++++...|++ ..+++.+|.++...|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 35677888888888888888888888888888765 468888888888888888888888888888888753 677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCCh
Q psy3224 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRK 1119 (1278)
Q Consensus 1040 ~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~ 1119 (1278)
.+|.++...+.. .+ ..+..++..+...|++++|+..|+++++.+|++..++.....
T Consensus 83 ~~g~~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~-------- 138 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL-----------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKR-------- 138 (225)
T ss_dssp HHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHH--------
T ss_pred HHHHHHHhhhhh-----hh-----------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHH--------
Confidence 777777655421 11 123344555666789999999999999999998766542221
Q ss_pred hHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHH
Q psy3224 1120 TKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCRE 1199 (1278)
Q Consensus 1120 ~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~ 1199 (1278)
+..+.. . .......+|.+|+..|++++|+.
T Consensus 139 ------l~~~~~--~------------------------------------------~~~~~~~~a~~~~~~~~~~~A~~ 168 (225)
T 2yhc_A 139 ------LVFLKD--R------------------------------------------LAKYEYSVAEYYTERGAWVAVVN 168 (225)
T ss_dssp ------HHHHHH--H------------------------------------------HHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ------HHHHHH--H------------------------------------------HHHHHHHHHHHHHHcCcHHHHHH
Confidence 111100 0 00145678999999999999999
Q ss_pred HHHHHHhhCCCCh---hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchh
Q psy3224 1200 WFNRTVKIDPDLG---DAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENW 1249 (1278)
Q Consensus 1200 ~~~kal~~~P~~~---d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w 1249 (1278)
.|+++++.+|+++ +++..++.++.+.|+.++|.+.++++....|++-+..
T Consensus 169 ~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~ 221 (225)
T 2yhc_A 169 RVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEHH 221 (225)
T ss_dssp HHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCCT
T ss_pred HHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhhc
Confidence 9999999999986 6899999999999999999999999999999876653
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.55 E-value=7.3e-14 Score=149.63 Aligned_cols=168 Identities=13% Similarity=0.050 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 827 SIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLM----------------GAKSKWLAGDVPAARGILSLAFQAN 890 (1278)
Q Consensus 827 ~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~----------------la~~~~~~g~~~~A~~~l~~al~~~ 890 (1278)
..++..+..+...|++++|+..|++++..+|+++.+|+. +|.++...|++++|+..|+++++.+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 346666777778899999999999999999998888888 8888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCHH
Q psy3224 891 PNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNE--YERARRLLAKARASAPTPR 968 (1278)
Q Consensus 891 p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~--~~~A~~~l~~al~~~p~~~ 968 (1278)
|+++.+|..+|.++...|++++|+..|++++ ..+|+++.+|+.+|.++...+. ...+...|.+++...|...
T Consensus 85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (208)
T 3urz_A 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKIL------QLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQY 158 (208)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH------HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhH
Confidence 8888888888888888888888888888887 7788888888888888766553 3455666666554333334
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh
Q psy3224 969 VMIQSAKLEWCLDNLERALQLLDEAIKVFPDF 1000 (1278)
Q Consensus 969 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 1000 (1278)
.++..|..+...|++++|+..|+++++++|++
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 56666777777777777777777777777763
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.55 E-value=4.1e-14 Score=158.09 Aligned_cols=228 Identities=15% Similarity=0.126 Sum_probs=124.1
Q ss_pred hcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHH
Q psy3224 838 NHGTRESLETLLQKAVAH--------CPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQAN--------PNSEEIWLAAV 901 (1278)
Q Consensus 838 ~~g~~~~A~~~~~~al~~--------~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--------p~~~~~~~~la 901 (1278)
..|++++|+.+|+++++. .|....++..+|.++...|++++|+..|.+++... |....++..++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456777777777777763 24445666667777777777777777777766552 33344555666
Q ss_pred HHHHhcCcHHHHHHHHHHHHHhhhhh--hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q psy3224 902 KLESENNEYERARRLLAKARAQAGAF--QANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWC 979 (1278)
Q Consensus 902 ~l~~~~g~~~~A~~~l~~al~~~~~l--~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~ 979 (1278)
.++...|++++|+.+|++++...... ...|... .++..+|.++..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~---------------------------------~~~~~la~~~~~ 139 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVA---------------------------------KQLNNLALLCQN 139 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHH---------------------------------HHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHH---------------------------------HHHHHHHHHHHH
Confidence 66666666666666665555332111 0023333 444555555555
Q ss_pred cCCHHHHHHHHHHHHHh--------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHH
Q psy3224 980 LDNLERALQLLDEAIKV--------FPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKK---------CPHSVPLWIMLA 1042 (1278)
Q Consensus 980 ~g~~~~A~~~l~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la 1042 (1278)
.|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.. .+....+|..++
T Consensus 140 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 219 (283)
T 3edt_B 140 QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAE 219 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH
Confidence 55555555555555554 4444555666666666666666666666666654 233344555555
Q ss_pred HHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy3224 1043 NLEERRKM------LIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQE 1098 (1278)
Q Consensus 1043 ~l~~~~g~------~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~ 1098 (1278)
.++...+. +..+..+++.+....|....++..++.++...|++++|..+|+++++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 220 EREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 54443322 233333333333333444556666777777777777777777776653
No 97
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.54 E-value=2.8e-12 Score=144.94 Aligned_cols=166 Identities=17% Similarity=0.163 Sum_probs=96.9
Q ss_pred cCCHH-HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Q psy3224 839 HGTRE-SLETLLQKAVAHCPKSEVLWLMGAKSKWLAGD----------VPAARGILSLAFQANPNSEEIWLAAVKLESEN 907 (1278)
Q Consensus 839 ~g~~~-~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~----------~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~ 907 (1278)
.|++. +|+.++..++..+|.+..+|...+.++...+. +++++.++..++..+|++..+|...+.+....
T Consensus 42 ~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l 121 (331)
T 3dss_A 42 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRL 121 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHC
T ss_pred cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhcc
Confidence 34443 57777777777777777777777777765544 45666666666666666666666666666655
Q ss_pred C--cHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHc---
Q psy3224 908 N--EYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNE-YERARRLLAKARASAPT-PRVMIQSAKLEWCL--- 980 (1278)
Q Consensus 908 g--~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~--- 980 (1278)
+ .+++++.++.+++ ..+|.+..+|...+.+....|. +++++..+.+++..+|. ..+|...+.++...
T Consensus 122 ~~~~~~~EL~~~~k~l------~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 122 PEPNWARELELCARFL------EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp SSCCHHHHHHHHHHHH------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCC
T ss_pred CcccHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhc
Confidence 5 3566666666665 5566666666666655555555 35555555555555553 35555555544433
Q ss_pred -----------CCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q psy3224 981 -----------DNLERALQLLDEAIKVFPDFAKLWMMKGQI 1010 (1278)
Q Consensus 981 -----------g~~~~A~~~l~~al~~~p~~~~~~~~la~~ 1010 (1278)
+.++++++++.+++..+|++..+|..+..+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~l 236 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL 236 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 224444445555555555444444433333
No 98
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.54 E-value=3.3e-12 Score=144.42 Aligned_cols=234 Identities=15% Similarity=0.087 Sum_probs=192.4
Q ss_pred HHcCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHHhhhhhhcCCCcHHHHHH
Q psy3224 871 WLAGDVP-AARGILSLAFQANPNSEEIWLAAVKLESENNE----------YERARRLLAKARAQAGAFQANPNSEEIWLA 939 (1278)
Q Consensus 871 ~~~g~~~-~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~----------~~~A~~~l~~al~~~~~l~~~p~~~~~~~~ 939 (1278)
...|.+. +|+.++.+++..+|++..+|.....+....+. +.+++.++..++ ..+|.+..+|..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L------~~~PKny~aW~h 113 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL------RVNPKSYGTWHH 113 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH------HHCTTCHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH------HhCCCCHHHHHH
Confidence 3456655 89999999999999999999999988877665 678888888887 889999999999
Q ss_pred HHHHHHHcCC--HHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc-
Q psy3224 940 AVKLESENNE--YERARRLLAKARASAPT-PRVMIQSAKLEWCLDN-LERALQLLDEAIKVFPDFAKLWMMKGQIEEQK- 1014 (1278)
Q Consensus 940 la~~~~~~g~--~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~-~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~- 1014 (1278)
.+.++...+. +++++.++.+++..+|. ..+|...+.+....|. +++++.++.+++..+|.+..+|...+.++...
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHS
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhh
Confidence 9999988884 89999999999999885 6899999888888888 68999999999999999999999999888776
Q ss_pred -------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCCCHH
Q psy3224 1015 -------------NLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERR-----------KMLIKARSVLEKGRLRNPNCAE 1070 (1278)
Q Consensus 1015 -------------g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~-----------g~~~~A~~~l~kal~~~p~~~~ 1070 (1278)
+.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++..|++.-
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w 273 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKW 273 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccch
Confidence 4578899999999999999999998776666554 4578899999999999998854
Q ss_pred HHHHHHHHHH---HcCCHHHHHHHHHHHHHHCCCcHHHHHHHH
Q psy3224 1071 LWLAAIRVEI---RAGLKDIANTMMAKALQECPNAGILWAEAI 1110 (1278)
Q Consensus 1071 ~~~~l~~~~~---~~g~~~~A~~~~~kal~~~P~~~~~~~~~~ 1110 (1278)
.+..++.+.. ..|..++....+.++.+.+|-....|..+.
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 4444433322 357788888899999999988777666543
No 99
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.53 E-value=3.1e-13 Score=146.65 Aligned_cols=188 Identities=13% Similarity=0.097 Sum_probs=108.1
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Q psy3224 893 SEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNS---EEIWLAAVKLESENNEYERARRLLAKARASAPT--- 966 (1278)
Q Consensus 893 ~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--- 966 (1278)
++..++.+|..+...|++++|+..|++++ ...|.+ ..+++.+|.++...|++++|+..|+++++..|+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~------~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~ 76 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALD------NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN 76 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHH------HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence 34556666666666666666666666665 444443 345666666666666666666666666666554
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-------
Q psy3224 967 -PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLW------- 1038 (1278)
Q Consensus 967 -~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------- 1038 (1278)
+.+++.+|.++...+.. ....+..++.++...|++++|+..|+++++..|++..++
T Consensus 77 ~~~a~~~~g~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 77 IDYVMYMRGLTNMALDDS----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHH
Confidence 13455555555432100 000011111111223455555555555555555544332
Q ss_pred ----------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Q psy3224 1039 ----------IMLANLEERRKMLIKARSVLEKGRLRNPNCA---ELWLAAIRVEIRAGLKDIANTMMAKALQECPNA 1102 (1278)
Q Consensus 1039 ----------~~la~l~~~~g~~~~A~~~l~kal~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~ 1102 (1278)
..+|.++...|++.+|+..|+++++..|+++ .++..++.++...|++++|+..++++....|++
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 4567777777888888888888887777765 457777777778888888888777777777665
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.52 E-value=6.6e-14 Score=156.41 Aligned_cols=140 Identities=14% Similarity=0.068 Sum_probs=115.6
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q psy3224 824 NKKSIWLRAAYFEKNHGTRESLETLLQKAVAHC--------PKSEVLWLMGAKSKWLAGDVPAARGILSLAFQA------ 889 (1278)
Q Consensus 824 ~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~--------P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~------ 889 (1278)
....+|...+.++...|++++|+..|++++... |....++..+|.++...|++++|+..|.+++..
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 456778889999999999999999999999873 566788999999999999999999999999999
Q ss_pred --CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhh--hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 890 --NPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAF--QANPNSEEIWLAAVKLESENNEYERARRLLAKARAS 963 (1278)
Q Consensus 890 --~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l--~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 963 (1278)
.|....++..++.++...|++++|+.++++++...... ...|....++..++.++...|++++|+.+|++++..
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 36667889999999999999999999999998543211 114555667777777777777777777777777765
No 101
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.49 E-value=1.5e-12 Score=147.76 Aligned_cols=271 Identities=12% Similarity=0.000 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy3224 936 IWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLD-NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQ 1013 (1278)
Q Consensus 936 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 1013 (1278)
++..+..+....+..++|+.++.+++..+|. ..+|...+.++...+ .+++++.+++.++..+|++..+|...+.++..
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3333334444555667899999999999886 688888888888888 59999999999999999999999999999888
Q ss_pred c-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy3224 1014 K-N-LLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLI--------KARSVLEKGRLRNPNCAELWLAAIRVEIRAG 1083 (1278)
Q Consensus 1014 ~-g-~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~--------~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g 1083 (1278)
. + ++++++.++.++++.+|.+..+|...+.+....+.++ ++++.+++++..+|.|..+|...+.++...+
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTST
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 7 7 8899999999999999999999999988888877777 8999999999999999999999999888888
Q ss_pred C-------HHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccC
Q psy3224 1084 L-------KDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSG 1156 (1278)
Q Consensus 1084 ~-------~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~ 1156 (1278)
. ++++++++.+++..+|++..+|..+..++...++... ..+..+ -|.....+ +.... ....-|...
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~--~~~~~~--~~~~~~~~-~~~~~-~~~~~~~~~- 288 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLV--PILPAI--LPYTASKL-NPDIE-TVEAFGFPM- 288 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSG--GGHHHH--GGGTC----------------CCC-
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcc--cccccc--cccccccc-cccch-hHHHHHHHH-
Confidence 6 7899999999999999999999877666544433200 000000 00000000 00000 000000000
Q ss_pred ccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhCCCChhHHHHHHHH
Q psy3224 1157 SRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTV-KIDPDLGDAWAYFYKF 1221 (1278)
Q Consensus 1157 ~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal-~~~P~~~d~~~~l~~~ 1221 (1278)
.+. .......+.++.++..++.+|...|+.++|.+.|+... +.+|-....|.+....
T Consensus 289 ----~~~----~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 289 ----PSD----PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp ----CC-----CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred ----Hhc----ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 000 00001235667788999999998999999999999987 6788877788776543
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.48 E-value=5.4e-13 Score=130.17 Aligned_cols=120 Identities=14% Similarity=0.029 Sum_probs=94.7
Q ss_pred HHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy3224 993 AIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072 (1278)
Q Consensus 993 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~ 1072 (1278)
+..++|+....+..+|..+.+.|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|+++++++|+++.+|
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34467777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Q psy3224 1073 LAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFL 1112 (1278)
Q Consensus 1073 ~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~ 1112 (1278)
..+|.++...|++++|+..|+++++.+|++..++..++.+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 8888888888888888888888888888887777766554
No 103
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.48 E-value=4.9e-12 Score=143.46 Aligned_cols=245 Identities=12% Similarity=0.052 Sum_probs=151.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-C-cHH
Q psy3224 835 FEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAG-DVPAARGILSLAFQANPNSEEIWLAAVKLESEN-N-EYE 911 (1278)
Q Consensus 835 l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~-g-~~~ 911 (1278)
+....+..++|+.++.+++..+|.+..+|...+.++...+ .+++++..+..++..+|++..+|...+.+.... + +++
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 3344455577999999999999999999999999998888 599999999999999999999999888888876 6 788
Q ss_pred HHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 912 RARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLD 991 (1278)
Q Consensus 912 ~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~ 991 (1278)
+++.++.+++ ..+|.+..+|...+.+....+.++.+ .. ..+.+++++++
T Consensus 143 ~EL~~~~k~L------~~dpkNy~AW~~R~wvl~~l~~~~~~------------~~-------------~~~~eELe~~~ 191 (349)
T 3q7a_A 143 SEIEYIHGSL------LPDPKNYHTWAYLHWLYSHFSTLGRI------------SE-------------AQWGSELDWCN 191 (349)
T ss_dssp HHHHHHHHHT------SSCTTCHHHHHHHHHHHHHHHHTTCC------------CH-------------HHHHHHHHHHH
T ss_pred HHHHHHHHHH------HhCCCCHHHHHHHHHHHHHhcccccc------------ch-------------hhHHHHHHHHH
Confidence 8888888887 88888888888888777666655400 00 01124444455
Q ss_pred HHHHhCCChHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-------------
Q psy3224 992 EAIKVFPDFAKLWMMKGQIEEQKNL-------LDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKML------------- 1051 (1278)
Q Consensus 992 ~al~~~p~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~------------- 1051 (1278)
++++.+|.+..+|...+.++...+. ++++++++.+++..+|++..+|..+..++...|..
T Consensus 192 k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~ 271 (349)
T 3q7a_A 192 EMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTA 271 (349)
T ss_dssp HHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccccccccc
Confidence 5555555555555555555444443 44555555555555555555555544444443332
Q ss_pred -------HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCcHHHHHHHH
Q psy3224 1052 -------IKARSVLEKGRLRN------PNCAELWLAAIRVEIRAGLKDIANTMMAKAL-QECPNAGILWAEAI 1110 (1278)
Q Consensus 1052 -------~~A~~~l~kal~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal-~~~P~~~~~~~~~~ 1110 (1278)
.........++... +.++.++..++.++...|+.++|..+|..+. +.+|-....|...+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 272 SKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp --------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 11111111111111 3445555555556656666666666666554 33455555554443
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.44 E-value=4.3e-13 Score=139.36 Aligned_cols=164 Identities=15% Similarity=0.041 Sum_probs=105.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q psy3224 933 SEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIE 1011 (1278)
Q Consensus 933 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 1011 (1278)
....++.++..+...|++++|+..|++++..+|+ +.+|+.+|.++...|++++|+..|++++...| ++..+..++.+.
T Consensus 5 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 5 PDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLE 83 (176)
T ss_dssp -CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHH
Confidence 3344556666666666666666666666666654 46666666666666666666666666666666 555554444332
Q ss_pred H-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHH
Q psy3224 1012 E-QKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNC--AELWLAAIRVEIRAGLKDIA 1088 (1278)
Q Consensus 1012 ~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~--~~~~~~l~~~~~~~g~~~~A 1088 (1278)
. ..+....|+..|++++..+|+++.+++.+|.++...|++++|+..|++++..+|+. +.+|..++.++...|+.++|
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 2 22233346677777777777777777777777777777777777777777777654 44667777777777777777
Q ss_pred HHHHHHHHH
Q psy3224 1089 NTMMAKALQ 1097 (1278)
Q Consensus 1089 ~~~~~kal~ 1097 (1278)
...|++++.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.43 E-value=1.5e-12 Score=127.07 Aligned_cols=116 Identities=16% Similarity=0.095 Sum_probs=91.1
Q ss_pred hCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy3224 963 SAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041 (1278)
Q Consensus 963 ~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 1041 (1278)
++|+ ...+...|..++..|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++.+|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 366777777777788888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy3224 1042 ANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRV 1078 (1278)
Q Consensus 1042 a~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~ 1078 (1278)
|.++...|++++|+..|+++++++|++..++..++.+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 8888888888888888888888888888777666654
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.43 E-value=2.3e-12 Score=145.44 Aligned_cols=166 Identities=15% Similarity=0.026 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHH-
Q psy3224 891 PNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRV- 969 (1278)
Q Consensus 891 p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~- 969 (1278)
|.+...++.++..+...|++++|+..|++++ ..+|++..++..++.++...|++++|+..|++++...|+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al------~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~ 187 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAW------QLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQ 187 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHH------HhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHH
Confidence 5555555555555555555555555555544 445555555555555555555555555554444444444321
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHH
Q psy3224 970 MIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS--VPLWIMLANLEER 1047 (1278)
Q Consensus 970 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~l~~~ 1047 (1278)
+...+..+...+..+.|+..|++++..+|+++.+++.+|.++...|++++|+..|.+++..+|++ ..++..++.++..
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 12222223333444444444444444444444444444444444444444444444444444444 4444444444444
Q ss_pred cCCHHHHHHHHHHHH
Q psy3224 1048 RKMLIKARSVLEKGR 1062 (1278)
Q Consensus 1048 ~g~~~~A~~~l~kal 1062 (1278)
.|+.++|...|++++
T Consensus 268 ~g~~~~a~~~~r~al 282 (287)
T 3qou_A 268 LGTGDALASXYRRQL 282 (287)
T ss_dssp HCTTCHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHH
Confidence 444444444444443
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.42 E-value=3e-12 Score=144.47 Aligned_cols=168 Identities=17% Similarity=0.045 Sum_probs=101.8
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHH
Q psy3224 856 CPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEE 935 (1278)
Q Consensus 856 ~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~ 935 (1278)
.|.+...++.+|..+...|++++|+..|++++..+|+++.+++.++.++...|++++|+..|++++ ...|+...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~------~~~p~~~~ 186 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP------LQDQDTRY 186 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC------GGGCSHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc------hhhcchHH
Confidence 355566666666666666666666666666666666666666666666666666666666666654 45554444
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh--HHHHHHHHHHHH
Q psy3224 936 IWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF--AKLWMMKGQIEE 1012 (1278)
Q Consensus 936 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~~~~~la~~~~ 1012 (1278)
.+...+..+...+..++|+..|++++...|+ +.+++.+|.++...|++++|+..|.++++.+|++ ..++..++.++.
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 4444444455555555666666666666654 4666666666666666666666666666666655 556666666666
Q ss_pred HcCCHHHHHHHHHHHHH
Q psy3224 1013 QKNLLDKAHDTFSQAIK 1029 (1278)
Q Consensus 1013 ~~g~~~~A~~~~~~al~ 1029 (1278)
..|+.++|...|++++.
T Consensus 267 ~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 267 ALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHCTTCHHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHHH
Confidence 66666666666665543
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.42 E-value=2.8e-12 Score=146.31 Aligned_cols=226 Identities=12% Similarity=0.045 Sum_probs=169.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy3224 839 HGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLA 918 (1278)
Q Consensus 839 ~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~ 918 (1278)
.|++++|..+++++.+..+.. ++...++++.|...|.++ +.++...|++++|+..|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~---------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~ 60 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS---------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYL 60 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC---------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc---------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHH
Confidence 356778999999998876642 111157888888888876 456778899999999999
Q ss_pred HHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 919 KARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-------PRVMIQSAKLEWCLDNLERALQLLD 991 (1278)
Q Consensus 919 ~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-------~~~~~~la~~~~~~g~~~~A~~~l~ 991 (1278)
+++.........+....++..++.++...|++++|+..|++++...+. ..++..+|.++.. |++++|+.+|+
T Consensus 61 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~ 139 (307)
T 2ifu_A 61 QEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQ 139 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHH
Confidence 988655433222233567778888999999999999999999887432 3678888888888 99999999999
Q ss_pred HHHHhCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 992 EAIKVFPDF------AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS------VPLWIMLANLEERRKMLIKARSVLE 1059 (1278)
Q Consensus 992 ~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~l~~~~g~~~~A~~~l~ 1059 (1278)
+++...|.. ..++..+|.++...|++++|+.+|++++...|.+ ..++..++.++...|++++|+..|+
T Consensus 140 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 140 QAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999887643 5778889999999999999999999999876543 2367777888888899999999999
Q ss_pred HHHHhCCCCHH-----HHHHHHHHHHHcCCHHHHHH
Q psy3224 1060 KGRLRNPNCAE-----LWLAAIRVEIRAGLKDIANT 1090 (1278)
Q Consensus 1060 kal~~~p~~~~-----~~~~l~~~~~~~g~~~~A~~ 1090 (1278)
+++ ++|.... .+..++..+ ..|+.+.+..
T Consensus 220 ~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 220 ESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999 8886542 223333333 4666655544
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.42 E-value=3.2e-13 Score=135.95 Aligned_cols=117 Identities=11% Similarity=-0.049 Sum_probs=104.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 987 LQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNP 1066 (1278)
Q Consensus 987 ~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p 1066 (1278)
-..+++++..+|+++.+++.+|.++...|++++|+.+|++++..+|+++.+|..+|.++...|++++|+..|++++.++|
T Consensus 22 ~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P 101 (151)
T 3gyz_A 22 GATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK 101 (151)
T ss_dssp SCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence 34567778888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Q psy3224 1067 NCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAG 1103 (1278)
Q Consensus 1067 ~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~ 1103 (1278)
+++.+|+.++.++...|++++|+..|+++++..|+++
T Consensus 102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999998865
No 110
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.42 E-value=5.5e-13 Score=138.51 Aligned_cols=167 Identities=14% Similarity=0.028 Sum_probs=111.7
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHH
Q psy3224 858 KSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIW 937 (1278)
Q Consensus 858 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~ 937 (1278)
.....++..|..+...|++++|+..|+++++.+|+++.+|..++.++...|++++|+..|++++ ...| ++..+
T Consensus 4 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~------~~~p-~~~~~ 76 (176)
T 2r5s_A 4 SPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP------LEYQ-DNSYK 76 (176)
T ss_dssp --CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC------GGGC-CHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh------hccC-ChHHH
Confidence 3334466666667777777777777777777777777777777777666666666666666654 4445 44333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCH
Q psy3224 938 LAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLL 1017 (1278)
Q Consensus 938 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 1017 (1278)
..++.+.. ...+....|+..|++++..+|+++.+++.+|.++...|++
T Consensus 77 ~~~~~~~~--------------------------------~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~ 124 (176)
T 2r5s_A 77 SLIAKLEL--------------------------------HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRD 124 (176)
T ss_dssp HHHHHHHH--------------------------------HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHH--------------------------------HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccH
Confidence 22222111 1111223467778888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1018 DKAHDTFSQAIKKCPHS--VPLWIMLANLEERRKMLIKARSVLEKGRL 1063 (1278)
Q Consensus 1018 ~~A~~~~~~al~~~p~~--~~~~~~la~l~~~~g~~~~A~~~l~kal~ 1063 (1278)
++|+..|+++++.+|.. ..++..++.++...|+.++|+..|++++.
T Consensus 125 ~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 125 EEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 88888888888888764 55788888888888888888888887764
No 111
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.42 E-value=4e-13 Score=147.48 Aligned_cols=214 Identities=10% Similarity=-0.045 Sum_probs=173.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCC-----------------
Q psy3224 1013 QKNLLDKAHDTFSQAIKKCPHSVPLWIML-------ANLEERRKMLIKARSVLEKGRLRNPNC----------------- 1068 (1278)
Q Consensus 1013 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~l~~~~g~~~~A~~~l~kal~~~p~~----------------- 1068 (1278)
..+++..|+..|.+++..+|..+.+|..+ +.++...+...+++..+.+.+.+.|..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 46888888888888888888888888888 678888888888888888888866542
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhh
Q psy3224 1069 ----AELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFW 1144 (1278)
Q Consensus 1069 ----~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~ 1144 (1278)
.++++.++.++...|++++|.++|..++...|.+. +++.++.++.+.+++++|+..|+.+...|... .
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~-------~ 169 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF-------L 169 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH-------H
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc-------c
Confidence 24566788889999999999999998888888887 77778888888999999999888664433200 0
Q ss_pred hhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-ChhHHHHHHHH
Q psy3224 1145 CENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKID--PD-LGDAWAYFYKF 1221 (1278)
Q Consensus 1145 ~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~--P~-~~d~~~~l~~~ 1221 (1278)
...+++.+|.++...|++++|+.+|++++... |. ..++++.++.+
T Consensus 170 --------------------------------~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gla 217 (282)
T 4f3v_A 170 --------------------------------AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMA 217 (282)
T ss_dssp --------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHH
Confidence 01278999999999999999999999998644 66 67899999999
Q ss_pred HHHhCCHHHHHHHHHHHHHhCCCCcchhhhhhhccccCCCCHHHHH
Q psy3224 1222 EIINGTEETQAEVKKRCLAAEPKHGENWCRVAKNVSNWKLPRETIL 1267 (1278)
Q Consensus 1222 ~~~~G~~~~A~~~l~ka~~~~P~~~~~w~~~~k~~~~~~~~~~~~l 1267 (1278)
+.++|+.++|..++++++..+|+ +..|..+...-.-...++.+.+
T Consensus 218 L~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~~~~~t~~~~i 262 (282)
T 4f3v_A 218 RRSQGNESAAVALLEWLQTTHPE-PKVAAALKDPSYRLKTTTAEQI 262 (282)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTCCCCCCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCCCCCCCcHHHH
Confidence 99999999999999999999999 9999988765444455555544
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.41 E-value=2.7e-12 Score=146.51 Aligned_cols=227 Identities=17% Similarity=0.045 Sum_probs=164.2
Q ss_pred cCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHH
Q psy3224 907 NNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERA 986 (1278)
Q Consensus 907 ~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A 986 (1278)
.|++.+|..+++++... .+.. ++...++++.|..+|.++ +.++...|++++|
T Consensus 4 ~~~~~eA~~~~~~a~k~------~~~~---------~~~~~~~~~~A~~~~~~a-------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKY------LKTS---------FMKWKPDYDSAASEYAKA-------------AVAFKNAKQLEQA 55 (307)
T ss_dssp HHHHHHHHHHHHHHHHH------HCCC---------SSSCSCCHHHHHHHHHHH-------------HHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHH------cccc---------ccCCCCCHHHHHHHHHHH-------------HHHHHHcCCHHHH
Confidence 45667777777776522 2211 000146777777777765 4567778888888
Q ss_pred HHHHHHHHHhCCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHH
Q psy3224 987 LQLLDEAIKVFPD------FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS------VPLWIMLANLEERRKMLIKA 1054 (1278)
Q Consensus 987 ~~~l~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~l~~~~g~~~~A 1054 (1278)
+..|.+++...+. ...++..+|.+|...|++++|+.+|++++...+.. ..++..+|.++.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 8888888876542 24677888888888899999999999888775331 4567788888888 999999
Q ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHH
Q psy3224 1055 RSVLEKGRLRNPNC------AELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKK 1128 (1278)
Q Consensus 1055 ~~~l~kal~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k 1128 (1278)
+.+|++++.+.|.. ..++..++.++...|++++|+.+|++++...|.+...+. .
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~------------------- 194 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPT-C------------------- 194 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-H-------------------
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhH-H-------------------
Confidence 99999999887643 456788899999999999999999999887654321110 0
Q ss_pred hccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q psy3224 1129 CEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKID 1208 (1278)
Q Consensus 1129 ~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~ 1208 (1278)
..+++.+|.++...|++++|+.+|++++ ++
T Consensus 195 -------------------------------------------------~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~ 224 (307)
T 2ifu_A 195 -------------------------------------------------YKKCIAQVLVQLHRADYVAAQKCVRESY-SI 224 (307)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TS
T ss_pred -------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CC
Confidence 0167788899999999999999999999 99
Q ss_pred CCChhH-----HHHHHHHHHHhCCHHHHHH
Q psy3224 1209 PDLGDA-----WAYFYKFEIINGTEETQAE 1233 (1278)
Q Consensus 1209 P~~~d~-----~~~l~~~~~~~G~~~~A~~ 1233 (1278)
|++... +..+...+ ..|+.+.+.+
T Consensus 225 p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 225 PGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp TTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 987653 33344433 5677766655
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.41 E-value=3e-12 Score=159.61 Aligned_cols=160 Identities=13% Similarity=0.064 Sum_probs=83.1
Q ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 948 NEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQ 1026 (1278)
Q Consensus 948 g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 1026 (1278)
|++++|+..|+++++.+|+ ..+|..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555555553 455555555555555555555555555555555555555566655555666666666666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHCCCcH
Q psy3224 1027 AIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRA---GLKDIANTMMAKALQECPNAG 1103 (1278)
Q Consensus 1027 al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~kal~~~P~~~ 1103 (1278)
+++.+|++..++..+|.++...|++++|+..|+++++.+|+++.++..++.++... |++++|...++++++..|.+.
T Consensus 83 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 83 ASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence 66555555555555565555566666666666666665555555555555555555 555666666666665555554
Q ss_pred HHHH
Q psy3224 1104 ILWA 1107 (1278)
Q Consensus 1104 ~~~~ 1107 (1278)
..+.
T Consensus 163 ~~~~ 166 (568)
T 2vsy_A 163 EPFA 166 (568)
T ss_dssp CHHH
T ss_pred ChHH
Confidence 4443
No 114
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.38 E-value=2e-11 Score=118.87 Aligned_cols=133 Identities=20% Similarity=0.247 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy3224 969 VMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERR 1048 (1278)
Q Consensus 969 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~ 1048 (1278)
+|+.++.++...|++++|+.++++++...|.+..++..++.++...|++++|..+|++++...|.+..++..++.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 56667777777788888888888888877877778888888888888888888888888888887777888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Q psy3224 1049 KMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPN 1101 (1278)
Q Consensus 1049 g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~ 1101 (1278)
|++++|+.+|++++...|.++.+|..++.++...|++++|...+.+++...|+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 88888888888888888877777788888888888888888888888877775
No 115
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.37 E-value=6.8e-12 Score=156.40 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=122.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHH
Q psy3224 873 AGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYER 952 (1278)
Q Consensus 873 ~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~ 952 (1278)
.|++++|+..|+++++.+|++..+|..++.++...|++++|+..|++++ ..+|.+..+|..+|.++...|++++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al------~~~p~~~~~~~~lg~~~~~~g~~~~ 75 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL------ALHPGHPEAVARLGRVRWTQQRHAE 75 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH------TTSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4678888888888888888888888888888888888888888888887 7788888888888888888888888
Q ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHH
Q psy3224 953 ARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQK---NLLDKAHDTFSQAI 1028 (1278)
Q Consensus 953 A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al 1028 (1278)
|+..|+++++..|+ ..++..+|.++...|++++|+..|+++++.+|+++.++..++.++... |++++|...|++++
T Consensus 76 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 76 AAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 88888888888875 678888888888888888888888888888888888888888888888 88888888888888
Q ss_pred HhCCCCHHHHHHHH
Q psy3224 1029 KKCPHSVPLWIMLA 1042 (1278)
Q Consensus 1029 ~~~p~~~~~~~~la 1042 (1278)
+.+|.+...+..++
T Consensus 156 ~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 156 AQGVGAVEPFAFLS 169 (568)
T ss_dssp HHTCCCSCHHHHTT
T ss_pred hcCCcccChHHHhC
Confidence 88888776666655
No 116
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.36 E-value=8.2e-13 Score=148.62 Aligned_cols=194 Identities=10% Similarity=-0.028 Sum_probs=148.0
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 998 PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIR 1077 (1278)
Q Consensus 998 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~ 1077 (1278)
|.+...+..+|..+...|++++|+..|.+++..+|+++.+|..+|.++...|++++|+..|++++.++|++..++..++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcH-----HHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccc
Q psy3224 1078 VEIRAGLKDIANTMMAKALQECPNAG-----ILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKC 1152 (1278)
Q Consensus 1078 ~~~~~g~~~~A~~~~~kal~~~P~~~-----~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A 1152 (1278)
++...|++++|+..|.+++...|+++ .+|..+.. .++.....
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~--------~~~~~~~~------------------------- 127 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI--------AKKKRWNS------------------------- 127 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH--------HHHHHHHH-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH--------HHHHHHHH-------------------------
Confidence 88888888888888888888887652 12211100 00000000
Q ss_pred cccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHh-CCHHHH
Q psy3224 1153 HRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIIN-GTEETQ 1231 (1278)
Q Consensus 1153 ~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~-G~~~~A 1231 (1278)
......|.++.+...++.++ .|++++|++.|+++++.+|++......+..++... +..+++
T Consensus 128 ----------------~~~~~~~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a 189 (281)
T 2c2l_A 128 ----------------IEERRIHQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADM 189 (281)
T ss_dssp ----------------HHHTCCCCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHhhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 00012345555777777665 79999999999999999999988888887777776 778899
Q ss_pred HHHHHHHHHhC
Q psy3224 1232 AEVKKRCLAAE 1242 (1278)
Q Consensus 1232 ~~~l~ka~~~~ 1242 (1278)
.+++.++.+..
T Consensus 190 ~~~f~~a~~~~ 200 (281)
T 2c2l_A 190 DELFSQVDEKR 200 (281)
T ss_dssp HHHHHHSSCTT
T ss_pred HHHHHhhhccc
Confidence 99999888743
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.35 E-value=2.7e-12 Score=129.24 Aligned_cols=115 Identities=14% Similarity=-0.025 Sum_probs=100.2
Q ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 955 RLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH 1033 (1278)
Q Consensus 955 ~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 1033 (1278)
..+++++..+|+ ...++.+|.++...|++++|+.+|++++..+|+++.+|..+|.++...|++++|+.+|++++..+|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 345555666665 5788888888889999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy3224 1034 SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCA 1069 (1278)
Q Consensus 1034 ~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~ 1069 (1278)
++.+|+.+|.++...|++++|+..|++++.+.|+.+
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999998765
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.35 E-value=3.5e-12 Score=139.99 Aligned_cols=189 Identities=12% Similarity=-0.016 Sum_probs=98.4
Q ss_pred hcCCHHHHHHHHHHHHHhCCCcHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------
Q psy3224 838 NHGTRESLETLLQKAVAHCPKSEVLWLMG-------AKSKWLAGDVPAARGILSLAFQANPNSE---------------- 894 (1278)
Q Consensus 838 ~~g~~~~A~~~~~~al~~~P~~~~~~~~l-------a~~~~~~g~~~~A~~~l~~al~~~p~~~---------------- 894 (1278)
..+++..|+..|.+++..+|....+|+.+ +.++...++..+++..+.+.+.+.|...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 35667777777777777777777777777 6777777777777777777777665432
Q ss_pred -----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Q psy3224 895 -----EIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT--- 966 (1278)
Q Consensus 895 -----~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--- 966 (1278)
.+++.++.++...|++++|...|..++ ...|.+. .++.++.++.+.+++++|+..|+.+....+.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~------~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAP------VAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSC------CTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHH------hcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence 233344445555555555555554443 3344444 4444444444444444444444433332111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVF--PD-FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH 1033 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 1033 (1278)
..+++.+|.++...|++++|+.+|++++... |. .+.+++.+|.++..+|+.++|+.+|++++..+|+
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 1244444444444444444444444444322 22 3334444444444444444444444444444444
No 119
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.33 E-value=8e-11 Score=126.22 Aligned_cols=153 Identities=14% Similarity=0.059 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC----cHHHHHHHHHHH
Q psy3224 845 LETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENN----EYERARRLLAKA 920 (1278)
Q Consensus 845 A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g----~~~~A~~~l~~a 920 (1278)
|+..|+++.+. .++.+++.+|.++...+++++|+..|+++.+. .++.+++.++.++.. + ++++|+.+|+++
T Consensus 5 A~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 5 PGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp TTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 66667777664 56777777777777777777777777777664 457777777777765 5 666666666665
Q ss_pred HHhhhhhhcCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCC---HHHHHHHHHHHHH----cCCHHHHHHH
Q psy3224 921 RAQAGAFQANPNSEEIWLAAVKLESE----NNEYERARRLLAKARASAPT---PRVMIQSAKLEWC----LDNLERALQL 989 (1278)
Q Consensus 921 l~~~~~l~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~---~~~~~~la~~~~~----~g~~~~A~~~ 989 (1278)
. .+.++.+++.++.+|.. .+++++|+.+|+++....+. +..++.++.++.. .+++++|+.+
T Consensus 80 ~--------~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 80 V--------EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp H--------HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred H--------HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 4 34455555555555544 44455555555555444442 3444444444444 3444444444
Q ss_pred HHHHHHhCCChHHHHHHHHHHH
Q psy3224 990 LDEAIKVFPDFAKLWMMKGQIE 1011 (1278)
Q Consensus 990 l~~al~~~p~~~~~~~~la~~~ 1011 (1278)
|++++.. |.++.+++.+|.+|
T Consensus 152 ~~~A~~~-~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 152 FKGSSSL-SRTGYAEYWAGMMF 172 (212)
T ss_dssp HHHHHHT-SCTTHHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHH
Confidence 4444444 33333444444444
No 120
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.33 E-value=4.6e-11 Score=128.13 Aligned_cols=175 Identities=17% Similarity=0.095 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcC----CHHHH
Q psy3224 878 AARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENN----EYERA 953 (1278)
Q Consensus 878 ~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g----~~~~A 953 (1278)
+|+..|+++.+. .++.+++.++.++...+++++|+.+|+++. ...++.+++.++.+|.. + ++++|
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~--------~~g~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAA--------AQGDGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------HTTCHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 466667777664 467777777777777777777777777765 34566777777777766 5 67777
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHH----cCCHHHHHHH
Q psy3224 954 RRLLAKARASAPTPRVMIQSAKLEWC----LDNLERALQLLDEAIKVFP--DFAKLWMMKGQIEEQ----KNLLDKAHDT 1023 (1278)
Q Consensus 954 ~~~l~~al~~~p~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A~~~ 1023 (1278)
+.+|+++... ..+..++.++.++.. .+++++|+.+|++++...| .++.+++.+|.+|.. .+++++|+.+
T Consensus 73 ~~~~~~A~~~-g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 73 RQLAEKAVEA-GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHHHHC-CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 7777777543 345666667766665 6677777777777776666 346677777777766 6667777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhC
Q psy3224 1024 FSQAIKKCPHSVPLWIMLANLEERR-K-----MLIKARSVLEKGRLRN 1065 (1278)
Q Consensus 1024 ~~~al~~~p~~~~~~~~la~l~~~~-g-----~~~~A~~~l~kal~~~ 1065 (1278)
|+++++. |.++.++..++.+|... | ++++|+.+|+++.+..
T Consensus 152 ~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7777666 44555666677666543 2 6677777777766654
No 121
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.33 E-value=4.6e-12 Score=127.38 Aligned_cols=118 Identities=11% Similarity=-0.016 Sum_probs=100.1
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 988 QLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPN 1067 (1278)
Q Consensus 988 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~ 1067 (1278)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Q psy3224 1068 CAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGIL 1105 (1278)
Q Consensus 1068 ~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~ 1105 (1278)
++.+|+.++.++...|++++|+..|+++++..|+++..
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 88888888888888888888888888888888876544
No 122
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.32 E-value=8.7e-11 Score=114.28 Aligned_cols=134 Identities=18% Similarity=0.259 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy3224 935 EIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQ 1013 (1278)
Q Consensus 935 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 1013 (1278)
.+|..++.++...|++++|+.+|++++...|. ...+..++.++...|++++|+.++++++...|.++.++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35677778888888888888888888888764 67788888888888889999999999888888888888889999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy3224 1014 KNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNC 1068 (1278)
Q Consensus 1014 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~ 1068 (1278)
.|++++|..+|.+++...|.+..++..++.++...|++++|..+|++++..+|++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999998888888889999999999999999999998888753
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.28 E-value=7.5e-13 Score=153.04 Aligned_cols=132 Identities=8% Similarity=-0.028 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF---------------AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 1032 (1278)
..+..+|.++...|++++|+..|++++...|++ ..+|..+|.++...|++++|+..|++++..+|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 444445555555555555555555555555544 57788888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHC
Q psy3224 1033 HSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIA-NTMMAKALQEC 1099 (1278)
Q Consensus 1033 ~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~kal~~~ 1099 (1278)
+++.+|+.+|.++...|++++|+..|++++.++|++..++..++.++...|++++| ...|.+++...
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888777 45667776554
No 124
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.28 E-value=9.1e-12 Score=125.22 Aligned_cols=117 Identities=13% Similarity=-0.013 Sum_probs=102.4
Q ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 955 RLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH 1033 (1278)
Q Consensus 955 ~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 1033 (1278)
..|++++...|. ...++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|++++..+|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 456777777775 5788888888888999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 1034 SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 1034 ~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
++.+++.+|.++...|++++|+..|++++.++|+++..
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999999999999999998887654
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.28 E-value=1.3e-11 Score=123.06 Aligned_cols=119 Identities=14% Similarity=0.004 Sum_probs=89.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 988 QLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPN 1067 (1278)
Q Consensus 988 ~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~ 1067 (1278)
..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+.+|++++.++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 35666677777777777777777777788888888888887777877777777777777778888888888888887787
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Q psy3224 1068 CAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILW 1106 (1278)
Q Consensus 1068 ~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 1106 (1278)
++.+|+.++.++...|++++|+..|++++...|+++..+
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 777777777777778888888888887777777665443
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.26 E-value=1e-11 Score=143.54 Aligned_cols=152 Identities=13% Similarity=0.097 Sum_probs=106.1
Q ss_pred hcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH----------------HH
Q psy3224 906 ENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTP----------------RV 969 (1278)
Q Consensus 906 ~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----------------~~ 969 (1278)
.++++++|+..+++++ ...|.+..+|..+|.++...|++++|+..|++++...|.. .+
T Consensus 125 ~L~~~~~A~~~~~~a~------~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~ 198 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNS------EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS 198 (336)
T ss_dssp EEEEEECCCCGGGCCH------HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHH
T ss_pred EEeecccccchhcCCH------HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHH
Confidence 4555666666666655 5566667777777777777777777777777777776642 67
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy3224 970 MIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRK 1049 (1278)
Q Consensus 970 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g 1049 (1278)
|..+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++.+|++..++..++.++...|
T Consensus 199 ~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 199 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CHHHH-HHHHHHHHH
Q psy3224 1050 MLIKA-RSVLEKGRL 1063 (1278)
Q Consensus 1050 ~~~~A-~~~l~kal~ 1063 (1278)
++++| ...|.+++.
T Consensus 279 ~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 279 RQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 77666 445555543
No 127
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.26 E-value=1e-11 Score=139.63 Aligned_cols=195 Identities=13% Similarity=0.030 Sum_probs=143.1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Q psy3224 931 PNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQ 1009 (1278)
Q Consensus 931 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~ 1009 (1278)
|.+...+..+|..+...|++++|+..|++++...|+ +.+|..+|.++...|++++|+..|+++++.+|+++.+++.+|.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 456677778888888888888888888888888874 6888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy3224 1010 IEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIAN 1089 (1278)
Q Consensus 1010 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~ 1089 (1278)
++...|++++|+..|++++..+|++...+...+.... ...++..+........|.++.+...++.+. .|++++|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 8888888888888888888888765322211111111 223334444445556677777766666654 68888888
Q ss_pred HHHHHHHHHCCCcHHHHHHHHhccCCC-CChhHHHHHHHHhc
Q psy3224 1090 TMMAKALQECPNAGILWAEAIFLEPRP-QRKTKSVDALKKCE 1130 (1278)
Q Consensus 1090 ~~~~kal~~~P~~~~~~~~~~~~~~~~-~~~~~A~~~l~k~~ 1130 (1278)
..++++++..|++..+...+..++... +++++|..+|.++.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~ 197 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVD 197 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888888888877766666555544 56777888887773
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.25 E-value=2e-10 Score=116.87 Aligned_cols=132 Identities=11% Similarity=-0.024 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEE 1046 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~ 1046 (1278)
...|..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|.+++..+|.++.+|..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 36677888888889999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHH
Q psy3224 1047 RRKMLIKARSVLEKGRLRNPNCAELWLAAIR--VEIRAGLKDIANTMMAKALQE 1098 (1278)
Q Consensus 1047 ~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~kal~~ 1098 (1278)
..|++++|+.+|++++..+|++..++..++. .+...|++++|+..+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999988888744444 477788888888888876554
No 129
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.25 E-value=4.2e-10 Score=125.13 Aligned_cols=248 Identities=10% Similarity=0.049 Sum_probs=186.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHH
Q psy3224 835 FEKNHGTRESLETLLQKAVAHCPKS-EVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERA 913 (1278)
Q Consensus 835 l~~~~g~~~~A~~~~~~al~~~P~~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A 913 (1278)
-..-.|+|..++.- +-+..|.+ ....+...+.|+.+|++.... ...| ...+...++.... +. |
T Consensus 22 n~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~-------~~~~-~~~a~~~la~~~~--~~---a 85 (310)
T 3mv2_B 22 QNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQD-------PTSK-LGKVLDLYVQFLD--TK---N 85 (310)
T ss_dssp HHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCCC-------SSST-THHHHHHHHHHHT--TT---C
T ss_pred HHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccCC-------CCCH-HHHHHHHHHHHhc--cc---H
Confidence 33456889888873 33334433 345566678888888876421 1112 2334555555543 22 7
Q ss_pred HHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C-HHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 914 RRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAP--T-PRVMIQSAKLEWCLDNLERALQLL 990 (1278)
Q Consensus 914 ~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~-~~~~~~la~~~~~~g~~~~A~~~l 990 (1278)
+..|++.+ ...+.+...+..+|.++...|++++|+.++.+.+...| . .+++...+.++...|+.+.|.+.+
T Consensus 86 ~~~l~~l~------~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 86 IEELENLL------KDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp CHHHHHTT------TTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHH------hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 78888765 44456677778999999999999999999999999886 3 588889999999999999999999
Q ss_pred HHHHHhCCC------hHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy3224 991 DEAIKVFPD------FAKLWMMKGQIEEQKN--LLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGR 1062 (1278)
Q Consensus 991 ~~al~~~p~------~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal 1062 (1278)
+++.+.+|+ ...+.+.-+++....| ++.+|..+|+++....|+.......+. ++..+|++++|...++.++
T Consensus 160 ~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 160 DNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 999999983 3334444455566556 999999999999988886222222223 8899999999999999877
Q ss_pred Hh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Q psy3224 1063 LR----------NPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWA 1107 (1278)
Q Consensus 1063 ~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~ 1107 (1278)
+. +|++++++.+++.+....|+ +|.+++.++.+..|+++.+..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 76 48899998899998888997 899999999999999997765
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.24 E-value=4.2e-11 Score=124.06 Aligned_cols=127 Identities=16% Similarity=0.134 Sum_probs=92.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHHH
Q psy3224 979 CLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANL-EERRKML--IKAR 1055 (1278)
Q Consensus 979 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l-~~~~g~~--~~A~ 1055 (1278)
..|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|++++..+|.++.++..+|.+ +...|++ ++|+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 456677777777777777777777777777777777777777777777777777777777777777 6677776 7777
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Q psy3224 1056 SVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGIL 1105 (1278)
Q Consensus 1056 ~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~ 1105 (1278)
.+|++++..+|+++.+|..++.++...|++++|...|.+++...|++...
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 77777777777777777777777777777777777777777777766433
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.24 E-value=2.6e-11 Score=120.79 Aligned_cols=120 Identities=12% Similarity=-0.018 Sum_probs=96.9
Q ss_pred HHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 955 RLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH 1033 (1278)
Q Consensus 955 ~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 1033 (1278)
..|++++...|+ ...++.+|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 345556666664 4777788888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy3224 1034 SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLA 1074 (1278)
Q Consensus 1034 ~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~ 1074 (1278)
++.+++.+|.++...|++++|+.+|++++.++|+++..+..
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 88888888888888888888888888888888877755433
No 132
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=7e-10 Score=123.34 Aligned_cols=182 Identities=9% Similarity=0.092 Sum_probs=151.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCC--CcHHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 879 ARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANP--NSEEIWLAAVKLESENNEYERARRL 956 (1278)
Q Consensus 879 A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~ 956 (1278)
|+..|++.+...+.+...+..+|.++...|++++|+.++.+.+ ..+| .+.+++...+.++...|+.+.|.+.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i------~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~ 158 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGI------DNDEAEGTTELLLLAIEVALLNNNVSTASTI 158 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH------TSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHh------ccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 7888888887765567777889999999999999999999987 6665 8889999999999999999999999
Q ss_pred HHHHHHhCC-----CHHHHHHHHH--HHHHcC--CHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 957 LAKARASAP-----TPRVMIQSAK--LEWCLD--NLERALQLLDEAIKVFPD--FAKLWMMKGQIEEQKNLLDKAHDTFS 1025 (1278)
Q Consensus 957 l~~al~~~p-----~~~~~~~la~--~~~~~g--~~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~ 1025 (1278)
++++.+..| +..+...++. +....| ++.+|..+|+++...+|+ ++.+++. ++..+|++++|...++
T Consensus 159 l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 159 FDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence 999999988 3455555543 355555 899999999999999987 3334444 8899999999999999
Q ss_pred HHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 1026 QAIKK----------CPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 1026 ~al~~----------~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
.+++. +|+++.++.+++.+....|+ +|.++++++.+.+|+++.+
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 77766 48899999999888888897 8999999999999999977
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.23 E-value=2.1e-10 Score=111.28 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~ 1047 (1278)
..|...|..+...|++++|+..|++++..+|+++.+|..+|.++...|++++|+..|++++..+|+++.+|..+|.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555555556666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q psy3224 1048 RKMLIKARSVLEKGRLRN------PNCAELWLAAIRVE 1079 (1278)
Q Consensus 1048 ~g~~~~A~~~l~kal~~~------p~~~~~~~~l~~~~ 1079 (1278)
.|++++|+..|++++.++ |++..++..+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 666666666666666666 55555555444443
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.22 E-value=2.5e-10 Score=121.86 Aligned_cols=131 Identities=14% Similarity=0.144 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC
Q psy3224 936 IWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN 1015 (1278)
Q Consensus 936 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g 1015 (1278)
.++.+|.++...|++++|+..|++++ .|++.+|..+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 34566667777777777777777774 4566777777777777777777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy3224 1016 LLDKAHDTFSQAIKKCPHSV----------------PLWIMLANLEERRKMLIKARSVLEKGRLRNPNC 1068 (1278)
Q Consensus 1016 ~~~~A~~~~~~al~~~p~~~----------------~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~ 1068 (1278)
++++|+..|+++++..|.+. .++..+|.++...|++++|+..|++++..+|++
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 78888777777777776655 777777777777777777777777777777765
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.7e-10 Score=112.09 Aligned_cols=115 Identities=14% Similarity=0.026 Sum_probs=108.5
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 998 PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIR 1077 (1278)
Q Consensus 998 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~ 1077 (1278)
|..+..|..+|..+...|++++|+..|.+++..+|+++.+|..+|.++...|++++|+..|++++.++|+++.+|..++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHhc
Q psy3224 1078 VEIRAGLKDIANTMMAKALQEC------PNAGILWAEAIFL 1112 (1278)
Q Consensus 1078 ~~~~~g~~~~A~~~~~kal~~~------P~~~~~~~~~~~~ 1112 (1278)
++...|++++|+..|++++... |++..++..+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 9999999999999999999999 8888888766544
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=2.4e-10 Score=140.90 Aligned_cols=173 Identities=11% Similarity=0.090 Sum_probs=158.0
Q ss_pred CHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC--
Q psy3224 949 EYERARRLLAKARASAPT-PRVMIQSAKLEWCLDN----------LERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN-- 1015 (1278)
Q Consensus 949 ~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~----------~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g-- 1015 (1278)
..++|+..+.+++..+|+ ..+|...+.++...++ +++++.+++++++.+|++..+|...+.++...+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 346778888888888886 5888888888887777 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------
Q psy3224 1016 LLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRK-MLIKARSVLEKGRLRNPNCAELWLAAIRVEIRA------------ 1082 (1278)
Q Consensus 1016 ~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g-~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~------------ 1082 (1278)
++++++.++.++++.+|.+..+|...+.+....| .+++++++++++++.+|.+..+|...+.++...
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 7799999999999999999999999999999999 899999999999999999999999999988875
Q ss_pred --CCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhH
Q psy3224 1083 --GLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTK 1121 (1278)
Q Consensus 1083 --g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~ 1121 (1278)
+.++++++++.+++..+|++..+|..+..++...+++.+
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 568999999999999999999999999999888777554
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.19 E-value=4.5e-10 Score=108.69 Aligned_cols=117 Identities=13% Similarity=0.064 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~ 1047 (1278)
..+..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+.+|.+++...|.++.++..+|.++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 55566666666666677777777777776776677777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy3224 1048 RKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGL 1084 (1278)
Q Consensus 1048 ~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~ 1084 (1278)
.|++++|+.+|++++..+|+++.++..++.++...|+
T Consensus 93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 7777777777777777777777666666666666654
No 138
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.18 E-value=2.6e-10 Score=118.08 Aligned_cols=126 Identities=11% Similarity=0.057 Sum_probs=111.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH-HHHcCCH--HHHH
Q psy3224 946 ENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQI-EEQKNLL--DKAH 1021 (1278)
Q Consensus 946 ~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~-~~~~g~~--~~A~ 1021 (1278)
..|++++|+..|++++...|. +.+|..+|.++...|++++|+.+|++++..+|+++.++..+|.+ +...|++ ++|+
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 567888999999999999885 68999999999999999999999999999999999999999999 7889998 9999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 1022 DTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 1022 ~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
.+|++++..+|.++.++..+|.++...|++++|+..|++++..+|++...
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 99999999999999999999999999999999999999999999987654
No 139
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.18 E-value=3.6e-10 Score=120.64 Aligned_cols=132 Identities=12% Similarity=0.048 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~ 1047 (1278)
..++.+|..+...|++++|+..|++++ .| ++.+|..+|.++...|++++|+..|++++..+|.++.+|..+|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 346678889999999999999999995 34 689999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Q psy3224 1048 RKMLIKARSVLEKGRLRNPNCA----------------ELWLAAIRVEIRAGLKDIANTMMAKALQECPNA 1102 (1278)
Q Consensus 1048 ~g~~~~A~~~l~kal~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~ 1102 (1278)
.|++++|+..|++++...|.+. .+|..++.++...|++++|...|++++...|++
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 9999999999999999888766 899999999999999999999999999999986
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.18 E-value=4.4e-11 Score=126.58 Aligned_cols=144 Identities=13% Similarity=0.006 Sum_probs=106.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH----------------HHHHHHH
Q psy3224 946 ENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFA----------------KLWMMKG 1008 (1278)
Q Consensus 946 ~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~----------------~~~~~la 1008 (1278)
..+.++++...+.......+. ...+..+|..+...|++++|+.+|.+++...|.++ .++..+|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 445555555554433333222 46677777788888888888888888888777665 7888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy3224 1009 QIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIA 1088 (1278)
Q Consensus 1009 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A 1088 (1278)
.++...|++++|+..|.+++..+|.++.+++.+|.++...|++++|+.+|++++.++|++..++..++.++...++..++
T Consensus 96 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 175 (198)
T 2fbn_A 96 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKK 175 (198)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888777776666
Q ss_pred H
Q psy3224 1089 N 1089 (1278)
Q Consensus 1089 ~ 1089 (1278)
.
T Consensus 176 ~ 176 (198)
T 2fbn_A 176 D 176 (198)
T ss_dssp -
T ss_pred H
Confidence 5
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.17 E-value=3.6e-10 Score=110.08 Aligned_cols=117 Identities=19% Similarity=0.097 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEE 1046 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~ 1046 (1278)
...|..+|.++...|++++|+.+|++++...|++..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 35666666666666677777777777777777667777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy3224 1047 RRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAG 1083 (1278)
Q Consensus 1047 ~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g 1083 (1278)
..|++++|+.+|++++..+|.+..++..++.++...|
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 7777777777777777777777666666666666554
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.16 E-value=4e-10 Score=115.17 Aligned_cols=107 Identities=14% Similarity=0.086 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~ 1047 (1278)
..|+.+|.++...|++++|+.+|++++..+|+++.+|..+|.++...|++++|+..|++++..+|+++.+|+.+|.++..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy3224 1048 RKMLIKARSVLEKGRLRNPNCAELWLA 1074 (1278)
Q Consensus 1048 ~g~~~~A~~~l~kal~~~p~~~~~~~~ 1074 (1278)
.|++++|+..|++++.++|++...|..
T Consensus 92 ~g~~~~A~~~~~~al~~~p~~~~~~~~ 118 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIEAEGNGGSDAMK 118 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 555555555555555555555554333
No 143
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.15 E-value=3.2e-10 Score=115.84 Aligned_cols=115 Identities=15% Similarity=0.045 Sum_probs=108.6
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy3224 997 FPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAI 1076 (1278)
Q Consensus 997 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~ 1076 (1278)
.+.+...|..+|.++...|++++|+.+|++++..+|.++.+|..+|.++...|++++|+.+|++++.++|+++.+|..++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 44568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHh
Q psy3224 1077 RVEIRAGLKDIANTMMAKALQECPNAGILWAEAIF 1111 (1278)
Q Consensus 1077 ~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~ 1111 (1278)
.++...|++++|+..|+++++..|++...|...+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999999887765543
No 144
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.15 E-value=1e-09 Score=111.52 Aligned_cols=131 Identities=15% Similarity=0.077 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q psy3224 934 EEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEE 1012 (1278)
Q Consensus 934 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~ 1012 (1278)
...|..+|.++...|++++|+..|++++...|. ..+|..+|.++...|++++|+.+|++++..+|.++.++..+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456778888888999999999999999998885 7899999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 1013 QKNLLDKAHDTFSQAIKKCPHSVPLWIML--ANLEERRKMLIKARSVLEKGRLR 1064 (1278)
Q Consensus 1013 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l--a~l~~~~g~~~~A~~~l~kal~~ 1064 (1278)
..|++++|+.+|++++..+|.+..++..+ +..+...|++++|+..+.++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999999999998888554 44477889999999999887654
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.15 E-value=3.3e-10 Score=109.66 Aligned_cols=124 Identities=13% Similarity=0.004 Sum_probs=115.5
Q ss_pred hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy3224 996 VFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAA 1075 (1278)
Q Consensus 996 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l 1075 (1278)
..|.++..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..|++++...|+++.+|..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 34566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCCh
Q psy3224 1076 IRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRK 1119 (1278)
Q Consensus 1076 ~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~ 1119 (1278)
+.++...|++++|...+.+++...|++..++..++.++...|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999888776555443
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.14 E-value=2e-09 Score=121.67 Aligned_cols=174 Identities=10% Similarity=-0.028 Sum_probs=135.5
Q ss_pred CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q psy3224 998 PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSV------PLWIMLANLEERRKMLIKARSVLEKGRLRNPNC--- 1068 (1278)
Q Consensus 998 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~--- 1068 (1278)
|.....+...+..+...|++++|...+.++++..+... ..+..++.++...|++++|+..|++++...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 34455666777788888999999999999988877654 234567788888999999999999999876543
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---HCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhh
Q psy3224 1069 ---AELWLAAIRVEIRAGLKDIANTMMAKALQ---ECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKL 1142 (1278)
Q Consensus 1069 ---~~~~~~l~~~~~~~g~~~~A~~~~~kal~---~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l 1142 (1278)
..++..+|.++...|++++|+.+|.+++. ..|++....
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~------------------------------------ 195 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFD------------------------------------ 195 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccch------------------------------------
Confidence 45788999999999999999999999984 444432211
Q ss_pred hhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------hhHHH
Q psy3224 1143 FWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDL------GDAWA 1216 (1278)
Q Consensus 1143 ~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~------~d~~~ 1216 (1278)
+.+++++|.+|...|++++|+.+|++++.+.++. +.++.
T Consensus 196 -----------------------------------~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 196 -----------------------------------VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp -----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred -----------------------------------HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 0177888999999999999999999998875432 56788
Q ss_pred HHHHHHHHhCCHHHH-HHHHHHHHHhC
Q psy3224 1217 YFYKFEIINGTEETQ-AEVKKRCLAAE 1242 (1278)
Q Consensus 1217 ~l~~~~~~~G~~~~A-~~~l~ka~~~~ 1242 (1278)
.++.++...|+.++| ..++++++.+.
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 889999999999998 77788888753
No 147
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.13 E-value=1.8e-09 Score=103.31 Aligned_cols=115 Identities=17% Similarity=0.206 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~ 1047 (1278)
..|+.++.++...|++++|+.+|++++...|++..++..+|.++...|++++|+.+|++++...|.++.++..++.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 45555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy3224 1048 RKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRA 1082 (1278)
Q Consensus 1048 ~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~ 1082 (1278)
.|++++|+.+|++++..+|+++.++..++.++...
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 66666666666666666666666666665555443
No 148
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.12 E-value=1.8e-09 Score=121.91 Aligned_cols=165 Identities=10% Similarity=-0.041 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh------H
Q psy3224 935 EIWLAAVKLESENNEYERARRLLAKARASAPT-------PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF------A 1001 (1278)
Q Consensus 935 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~ 1001 (1278)
..+...+..+...|++++|+..+.+++...+. ...++.++.++...|++++|+..|++++...+.. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34445566666778888888888887776653 1334556677777888888888888888765433 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C
Q psy3224 1002 KLWMMKGQIEEQKNLLDKAHDTFSQAI---KKCPHSV----PLWIMLANLEERRKMLIKARSVLEKGRLRNPN------C 1068 (1278)
Q Consensus 1002 ~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~------~ 1068 (1278)
.++..+|.+|...|++++|+.+|++++ +..|.+. .++..+|.++...|++++|+.+|++++.+.++ .
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 678888888888888888888888888 5556543 57778888888899999999999888876532 2
Q ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHC
Q psy3224 1069 AELWLAAIRVEIRAGLKDIA-NTMMAKALQEC 1099 (1278)
Q Consensus 1069 ~~~~~~l~~~~~~~g~~~~A-~~~~~kal~~~ 1099 (1278)
..++..++.++...|++++| ..++++++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 56788888888889998888 77788887643
No 149
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.12 E-value=3.8e-10 Score=109.86 Aligned_cols=118 Identities=18% Similarity=0.004 Sum_probs=112.3
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy3224 997 FPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAI 1076 (1278)
Q Consensus 997 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~ 1076 (1278)
.|.+...|..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.+|++++..+|+++.+|..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccC
Q psy3224 1077 RVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEP 1114 (1278)
Q Consensus 1077 ~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~ 1114 (1278)
.++...|++++|+..|++++...|.+..++..++.++.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999998887777654
No 150
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.12 E-value=1.5e-09 Score=102.80 Aligned_cols=111 Identities=19% Similarity=0.136 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~ 1047 (1278)
..+..+|..+...|++++|+..|++++...|+++.++..+|.++...|++++|...+++++...|.++.++..+|.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy3224 1048 RKMLIKARSVLEKGRLRNPNCAELWLAAIRV 1078 (1278)
Q Consensus 1048 ~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~ 1078 (1278)
.|++++|+.+|++++..+|+++.++..++.+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6666666666666666666666665555544
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.12 E-value=3.9e-10 Score=108.85 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy3224 970 MIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRK 1049 (1278)
Q Consensus 970 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g 1049 (1278)
++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHhCCCC
Q psy3224 1050 MLIKARSVLEKGRLRNPNC 1068 (1278)
Q Consensus 1050 ~~~~A~~~l~kal~~~p~~ 1068 (1278)
++++|+..|++++..+|++
T Consensus 100 ~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHHhCcCC
Confidence 5555555555555555543
No 152
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.10 E-value=1.5e-09 Score=133.63 Aligned_cols=181 Identities=15% Similarity=0.147 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 877 PAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRL 956 (1278)
Q Consensus 877 ~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 956 (1278)
++|+..+.+++..+|++..+|...+.+....++... .. .....+++++..
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~---------------------~~---------~~~~~~~~eL~~ 95 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKS---------------------PE---------ESAALVKAELGF 95 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSC---------------------HH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccc---------------------hh---------hhhhhHHHHHHH
Confidence 455666666666666666666666666554433000 00 000015666666
Q ss_pred HHHHHHhCCC-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q psy3224 957 LAKARASAPT-PRVMIQSAKLEWCLD--NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN-LLDKAHDTFSQAIKKCP 1032 (1278)
Q Consensus 957 l~~al~~~p~-~~~~~~la~~~~~~g--~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p 1032 (1278)
+++++..+|. ..+|...+.++...+ ++++++.+++++++.+|.+..+|...+.++...| .++++++++.++++.+|
T Consensus 96 ~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p 175 (567)
T 1dce_A 96 LESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF 175 (567)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC
Confidence 6666666664 466666666666666 6688888888888888888888888888888888 78888888888888888
Q ss_pred CCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy3224 1033 HSVPLWIMLANLEERR--------------KMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDI 1087 (1278)
Q Consensus 1033 ~~~~~~~~la~l~~~~--------------g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~ 1087 (1278)
.+..+|...+.++... +.+++|++++.+++..+|++..+|..+..++...+.+++
T Consensus 176 ~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 176 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 8888888888877764 567999999999999999999999999999988887555
No 153
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.09 E-value=5.7e-10 Score=107.66 Aligned_cols=103 Identities=17% Similarity=0.064 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 1002 KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIR 1081 (1278)
Q Consensus 1002 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~ 1081 (1278)
..++.+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.++|+++.+|..++.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHCCCcHH
Q psy3224 1082 AGLKDIANTMMAKALQECPNAGI 1104 (1278)
Q Consensus 1082 ~g~~~~A~~~~~kal~~~P~~~~ 1104 (1278)
.|++++|+..|+++++..|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHC-------
T ss_pred cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999998653
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.09 E-value=1.1e-10 Score=123.65 Aligned_cols=150 Identities=15% Similarity=-0.038 Sum_probs=125.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HH
Q psy3224 974 AKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSV----------------PL 1037 (1278)
Q Consensus 974 a~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~ 1037 (1278)
+......+.++++.+.+.......+.....+..+|.++...|++++|+..|.+++...|.++ .+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33445667888888888777766677788999999999999999999999999999999887 89
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCC
Q psy3224 1038 WIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQ 1117 (1278)
Q Consensus 1038 ~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~ 1117 (1278)
|..+|.++...|++++|+.+|++++..+|+++.+++.++.++...|++++|+..|++++...|++..++..++.++...+
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 170 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 170 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887776555
Q ss_pred ChhHHH
Q psy3224 1118 RKTKSV 1123 (1278)
Q Consensus 1118 ~~~~A~ 1123 (1278)
+..++.
T Consensus 171 ~~~~~~ 176 (198)
T 2fbn_A 171 EARKKD 176 (198)
T ss_dssp HHHC--
T ss_pred HHHHHH
Confidence 444443
No 155
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.08 E-value=1.8e-09 Score=103.36 Aligned_cols=117 Identities=22% Similarity=0.203 Sum_probs=108.7
Q ss_pred CCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy3224 997 FPDF-AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAA 1075 (1278)
Q Consensus 997 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l 1075 (1278)
+|.. ...|..+|.++...|++++|+.+|.+++...|.+..++..++.++...|++++|+.+|++++...|.++.+|..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4544 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhcc
Q psy3224 1076 IRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLE 1113 (1278)
Q Consensus 1076 ~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~ 1113 (1278)
+.++...|++++|...+++++...|++..++..++.++
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999888777654
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.08 E-value=2e-09 Score=101.97 Aligned_cols=113 Identities=17% Similarity=0.022 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy3224 1000 FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVE 1079 (1278)
Q Consensus 1000 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~ 1079 (1278)
.+..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..+++++...|+++.+|..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Q psy3224 1080 IRAGLKDIANTMMAKALQECPNAGILWAEAIFL 1112 (1278)
Q Consensus 1080 ~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~ 1112 (1278)
...|++++|...+.++++..|+++.++..++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 999999999999999999999999998876654
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.08 E-value=1.2e-09 Score=107.25 Aligned_cols=105 Identities=10% Similarity=-0.033 Sum_probs=63.3
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy3224 997 FPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAI 1076 (1278)
Q Consensus 997 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~ 1076 (1278)
.|.++..+..+|.++...|++++|+..|.+++..+|.++.+|..+|.++...|++++|+..|++++.++|+++.+|..++
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34455556666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC
Q psy3224 1077 RVEIRAGLKDIANTMMAKALQECPN 1101 (1278)
Q Consensus 1077 ~~~~~~g~~~~A~~~~~kal~~~P~ 1101 (1278)
.++...|++++|+..|.+++...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 6666666666666666666655554
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.07 E-value=1.5e-09 Score=106.65 Aligned_cols=115 Identities=11% Similarity=0.008 Sum_probs=89.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy3224 966 TPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLE 1045 (1278)
Q Consensus 966 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~ 1045 (1278)
++..|..+|.++...|++++|+.+|++++..+|+++.+|..+|.++...|++++|+..|++++..+|+++.+|..+|.++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 35677777777777778888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH
Q psy3224 1046 ERRKMLIKARSVLEKGRLRNPN-----CAELWLAAIRVEI 1080 (1278)
Q Consensus 1046 ~~~g~~~~A~~~l~kal~~~p~-----~~~~~~~l~~~~~ 1080 (1278)
...|++++|+..|++++.+.|+ +..++..+..+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887776 5555555554443
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.07 E-value=1.8e-09 Score=105.19 Aligned_cols=98 Identities=11% Similarity=0.061 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHH
Q psy3224 969 VMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS-------VPLWIML 1041 (1278)
Q Consensus 969 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~l 1041 (1278)
.+..+|..++..|++++|+.+|+++++++|+++.+|..+|.++...|++++|+..|+++++++|++ ..++..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555555555555555443 1244445
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 1042 ANLEERRKMLIKARSVLEKGRLRNP 1066 (1278)
Q Consensus 1042 a~l~~~~g~~~~A~~~l~kal~~~p 1066 (1278)
|.++...|++++|+..|++++...|
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 5555555555555555555555544
No 160
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.05 E-value=1.3e-09 Score=110.93 Aligned_cols=113 Identities=15% Similarity=0.021 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKV------------------FPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK 1029 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 1029 (1278)
..+...|..++..|++++|+..|.+++.. .|.+..+|..+|.++...|++++|+..+.+++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 44555566666666666666666666665 566678888888888888888888888888888
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q psy3224 1030 KCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCA-ELWLAAIRVEI 1080 (1278)
Q Consensus 1030 ~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~-~~~~~l~~~~~ 1080 (1278)
.+|.++.+|+.+|.++...|++++|+..|++++.++|+++ .+...+..+..
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888887 55555554443
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=3e-09 Score=105.65 Aligned_cols=110 Identities=17% Similarity=0.025 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF---AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANL 1044 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l 1044 (1278)
..++.+|..+...|++++|+.+|++++...|++ ..+|..+|.++...|++++|+..|++++...|.++.+|..+|.+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 444444555555555555555555555555544 44444455555455555555555555554444444444444444
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy3224 1045 EERRKMLIKARSVLEKGRLRNPNCAELWLAAIR 1077 (1278)
Q Consensus 1045 ~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~ 1077 (1278)
+...|++++|+.+|++++..+|++..++..+..
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 444455555555555554444444444444333
No 162
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.05 E-value=1.8e-10 Score=138.86 Aligned_cols=167 Identities=11% Similarity=-0.014 Sum_probs=109.6
Q ss_pred hcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHH
Q psy3224 906 ENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLER 985 (1278)
Q Consensus 906 ~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~ 985 (1278)
..+++++|+..++.++ ...|.....|..+|.++...|++++|+..|++++...|....+ ..+
T Consensus 246 ~l~~~~~A~~~~~~~~------~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-----------~~~- 307 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDT------KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL-----------SEK- 307 (457)
T ss_dssp EEEEEECCCCGGGSCH------HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC-----------CHH-
T ss_pred hhhhcccCcchhhcCH------HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC-----------ChH-
Confidence 4555556655555544 4445555555555555555555555555555555544421000 000
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 986 ALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRN 1065 (1278)
Q Consensus 986 A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~ 1065 (1278)
...+..+....+|..+|.++...|++++|+..|.+++..+|++..+|+.+|.++...|++++|+..|+++++++
T Consensus 308 ------~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 308 ------ESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 00011111267888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHH
Q psy3224 1066 PNCAELWLAAIRVEIRAGLKDIANT-MMAKAL 1096 (1278)
Q Consensus 1066 p~~~~~~~~l~~~~~~~g~~~~A~~-~~~kal 1096 (1278)
|++..++..++.++...++++++.. .+.+++
T Consensus 382 P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 382 PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888889888888888877764 344443
No 163
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.03 E-value=1.5e-09 Score=105.65 Aligned_cols=104 Identities=16% Similarity=0.092 Sum_probs=96.0
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HH
Q psy3224 999 DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCA-------EL 1071 (1278)
Q Consensus 999 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~-------~~ 1071 (1278)
+...++..+|..+...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.++|++. .+
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999988653 46
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Q psy3224 1072 WLAAIRVEIRAGLKDIANTMMAKALQECPNA 1102 (1278)
Q Consensus 1072 ~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~ 1102 (1278)
+..+|.++...|++++|+..|++++...|+.
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 7888999999999999999999999998863
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.03 E-value=5.5e-09 Score=101.31 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=70.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q psy3224 970 MIQSAKLEWCLDNLERALQLLDEAIKVFPDFA---KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS---VPLWIMLAN 1043 (1278)
Q Consensus 970 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~ 1043 (1278)
++.+|..+...|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|++++...|++ +.++..+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 44556666666666666666666666666655 566666666666666666666666666666666 566666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy3224 1044 LEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRV 1078 (1278)
Q Consensus 1044 l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~ 1078 (1278)
++...|++++|+.+|++++...|+++.+......+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 66666666666666666666666666554444433
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.02 E-value=1.2e-10 Score=140.37 Aligned_cols=149 Identities=11% Similarity=0.021 Sum_probs=121.1
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHH
Q psy3224 981 DNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS---------------VPLWIMLANLE 1045 (1278)
Q Consensus 981 g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~l~ 1045 (1278)
+++++|+..|+.++...|+....|..+|.++...|++++|+..|.+++..+|.+ ..+|..+|.++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666667777777777777777777777777777777776 68999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHH
Q psy3224 1046 ERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDA 1125 (1278)
Q Consensus 1046 ~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~ 1125 (1278)
...|++++|+..|++++.++|++..+|+.++.++...|++++|+..|+++++.+|++..++..++.++...+++.++...
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888776543
Q ss_pred -HHHh
Q psy3224 1126 -LKKC 1129 (1278)
Q Consensus 1126 -l~k~ 1129 (1278)
++++
T Consensus 408 ~~~~~ 412 (457)
T 1kt0_A 408 IYANM 412 (457)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 4443
No 166
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=4.8e-09 Score=104.18 Aligned_cols=120 Identities=17% Similarity=0.066 Sum_probs=110.3
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHH
Q psy3224 928 QANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKL 1003 (1278)
Q Consensus 928 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~ 1003 (1278)
...|.+...+..++..+...|++++|+..|++++...|+ ..+|..++.++...|++++|+.+|++++...|+++.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 345778899999999999999999999999999999997 6889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 1004 WMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047 (1278)
Q Consensus 1004 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~ 1047 (1278)
++.+|.++...|++++|+.+|++++..+|++..++..++.+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999888877543
No 167
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.01 E-value=4.1e-09 Score=119.06 Aligned_cols=159 Identities=12% Similarity=-0.022 Sum_probs=120.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-H------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh------HHHHHHH
Q psy3224 941 VKLESENNEYERARRLLAKARASAPT-P------RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF------AKLWMMK 1007 (1278)
Q Consensus 941 a~~~~~~g~~~~A~~~l~~al~~~p~-~------~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~l 1007 (1278)
+..+...|++++|..++++++...+. + ..+..++.++...+++++|+.+|++++...+.. ..++..+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 44555777888888888887776553 1 122346677777788888888888888854432 3468888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q psy3224 1008 GQIEEQKNLLDKAHDTFSQAIKKC---PH----SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNC------AELWLA 1074 (1278)
Q Consensus 1008 a~~~~~~g~~~~A~~~~~~al~~~---p~----~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~------~~~~~~ 1074 (1278)
|.+|...|++++|+.+|+++++.. |. ...++..+|.++...|++++|+.++++++.+.+.. +.++..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 889999999999999999888532 12 24577888999999999999999999998876433 678889
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHHHC
Q psy3224 1075 AIRVEIRAG-LKDIANTMMAKALQEC 1099 (1278)
Q Consensus 1075 l~~~~~~~g-~~~~A~~~~~kal~~~ 1099 (1278)
+|.++...| .+++|+..|++++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 999999999 4699999999988654
No 168
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.00 E-value=1e-08 Score=115.74 Aligned_cols=126 Identities=11% Similarity=0.015 Sum_probs=93.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CChHHHHH
Q psy3224 940 AVKLESENNEYERARRLLAKARASAPT-------PRVMIQSAKLEWCLDNLERALQLLDEAIKV---F----PDFAKLWM 1005 (1278)
Q Consensus 940 la~~~~~~g~~~~A~~~l~~al~~~p~-------~~~~~~la~~~~~~g~~~~A~~~l~~al~~---~----p~~~~~~~ 1005 (1278)
++.++...+++++|+..|++++...+. ..++..+|.++...|++++|+.+|+++++. . +....++.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 455555666777777777777764322 246777778888888888888888888742 1 22346788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Q psy3224 1006 MKGQIEEQKNLLDKAHDTFSQAIKKCPHS------VPLWIMLANLEERRKM-LIKARSVLEKGRLRN 1065 (1278)
Q Consensus 1006 ~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~l~~~~g~-~~~A~~~l~kal~~~ 1065 (1278)
.+|.+|...|++++|+.+++++++..+.. +.++..+|.++...|+ +++|+..|++++.+.
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 88999999999999999999988876443 6788899999999994 699999999988753
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.00 E-value=2.8e-09 Score=112.40 Aligned_cols=167 Identities=14% Similarity=0.039 Sum_probs=119.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCH
Q psy3224 978 WCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKK------CPHSVPLWIMLANLEERRKML 1051 (1278)
Q Consensus 978 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~l~~~~g~~ 1051 (1278)
...|++++|...++.+....+....++..+|.++...|++++|+..|++++.. .|....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34677777777554444433366788888888888888888888888888873 333456777888888889999
Q ss_pred HHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHH
Q psy3224 1052 IKARSVLEKGRLR---NPNC----AELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVD 1124 (1278)
Q Consensus 1052 ~~A~~~l~kal~~---~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~ 1124 (1278)
++|+.+|++++.. .+++ ..++..++.++...|++++|...+.+++...+.....+.
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------- 145 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVA----------------- 145 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-----------------
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHH-----------------
Confidence 9999999888887 4433 345778888889999999999999888765321110000
Q ss_pred HHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy3224 1125 ALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRT 1204 (1278)
Q Consensus 1125 ~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~ka 1204 (1278)
...++..+|.++...|++++|+.+|+++
T Consensus 146 ----------------------------------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 146 ----------------------------------------------------IACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------------------------------------------------HHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 0016778899999999999999999999
Q ss_pred HhhCCCChh
Q psy3224 1205 VKIDPDLGD 1213 (1278)
Q Consensus 1205 l~~~P~~~d 1213 (1278)
+.+....++
T Consensus 174 l~~~~~~~~ 182 (203)
T 3gw4_A 174 RDIFAELED 182 (203)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHcCC
Confidence 987555444
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.99 E-value=1.6e-09 Score=101.76 Aligned_cols=106 Identities=15% Similarity=0.134 Sum_probs=74.5
Q ss_pred CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q psy3224 997 FPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPN--CAELWLA 1074 (1278)
Q Consensus 997 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~--~~~~~~~ 1074 (1278)
+|+++.++..+|.++...|++++|+..|+++++..|.+..+|..+|.++...|++++|+.+|++++..+|. +..+|..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 45566666677777777777777777777777777777777777777777777777777777777777776 6777777
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHHCCCc
Q psy3224 1075 AIRVEIRA-GLKDIANTMMAKALQECPNA 1102 (1278)
Q Consensus 1075 l~~~~~~~-g~~~~A~~~~~kal~~~P~~ 1102 (1278)
++.++... |++++|+..+.+++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 77777777 77777777777777666654
No 171
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.99 E-value=2.2e-09 Score=106.76 Aligned_cols=103 Identities=11% Similarity=-0.039 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------hH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPD-------FA-----KLWMMKGQIEEQKNLLDKAHDTFSQAIKK----- 1030 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-------~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~----- 1030 (1278)
..+...|..++..|++++|+..|+++++.+|+ +. .+|.++|.++...|++++|+..|.++|++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 45566666667777777777777777777776 22 26666666666666666666666666666
Q ss_pred --CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy3224 1031 --CPHSVPLW----IMLANLEERRKMLIKARSVLEKGRLRNPNCAE 1070 (1278)
Q Consensus 1031 --~p~~~~~~----~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~ 1070 (1278)
+|++..+| +.+|.++..+|++++|+..|+++++++|++..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 55555555 55555555555555555555555555554443
No 172
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.98 E-value=2.6e-09 Score=106.19 Aligned_cols=105 Identities=15% Similarity=0.024 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q psy3224 1001 AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH-------SVP-----LWIMLANLEERRKMLIKARSVLEKGRLR---- 1064 (1278)
Q Consensus 1001 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~l~~~~g~~~~A~~~l~kal~~---- 1064 (1278)
...+...|..+...|++++|+..|+++++.+|+ +.. +|..+|.++..+|++++|+..|++++.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 567888999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ---CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Q psy3224 1065 ---NPNCAELW----LAAIRVEIRAGLKDIANTMMAKALQECPNAGIL 1105 (1278)
Q Consensus 1065 ---~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~ 1105 (1278)
+|++..+| +..+.++..+|++++|+..|+++++..|++..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 99999999 999999999999999999999999999986533
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.97 E-value=6.8e-09 Score=100.65 Aligned_cols=108 Identities=13% Similarity=0.044 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q psy3224 1002 KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSV---PLWIMLANLEERRKMLIKARSVLEKGRLRNPNC---AELWLAA 1075 (1278)
Q Consensus 1002 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~---~~~~~~l 1075 (1278)
..++.+|.++...|++++|+..|++++...|+++ .+++.+|.++...|++++|+.+|++++..+|++ +.++..+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 3577899999999999999999999999999988 799999999999999999999999999999999 8889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHH
Q psy3224 1076 IRVEIRAGLKDIANTMMAKALQECPNAGILWAEA 1109 (1278)
Q Consensus 1076 ~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~ 1109 (1278)
+.++...|++++|+..|++++...|+++.+....
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 9999999999999999999999999998776643
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.97 E-value=7.2e-10 Score=127.98 Aligned_cols=156 Identities=9% Similarity=-0.011 Sum_probs=84.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q psy3224 932 NSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIE 1011 (1278)
Q Consensus 932 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~ 1011 (1278)
.....+..+|..+...|++++|+..|++++...|....+ ...+++.++...+. ..+|+.+|.++
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMF-------QLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHH-------TCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhh-------hhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 345566677777777777777777777777776653321 11222233322221 24788899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHH
Q psy3224 1012 EQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRV-EIRAGLKDIANT 1090 (1278)
Q Consensus 1012 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~-~~~~g~~~~A~~ 1090 (1278)
...|++++|+..|++++..+|++..+|+.+|.++...|++++|+..|++++.++|++..++..++.+ ....+..+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888888888876 445667788888
Q ss_pred HHHHHHHHCCCcH
Q psy3224 1091 MMAKALQECPNAG 1103 (1278)
Q Consensus 1091 ~~~kal~~~P~~~ 1103 (1278)
.|.+++...|+++
T Consensus 321 ~~~~~l~~~p~~~ 333 (338)
T 2if4_A 321 MYKGIFKGKDEGG 333 (338)
T ss_dssp -------------
T ss_pred HHHHhhCCCCCCC
Confidence 8888888888765
No 175
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.96 E-value=5.2e-09 Score=106.52 Aligned_cols=112 Identities=16% Similarity=0.116 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 1000 FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKK------------------CPHSVPLWIMLANLEERRKMLIKARSVLEKG 1061 (1278)
Q Consensus 1000 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~l~~~~g~~~~A~~~l~ka 1061 (1278)
....+...|..+...|++++|+..|.+++.. +|.+..+|..+|.++...|++++|+..++++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3678889999999999999999999999999 6777789999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-HHHHHHHh
Q psy3224 1062 RLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAG-ILWAEAIF 1111 (1278)
Q Consensus 1062 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~-~~~~~~~~ 1111 (1278)
+.++|+++.+|+.++.++...|++++|+..|.+++..+|++. .+...+..
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998 55554433
No 176
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.96 E-value=7.7e-09 Score=109.01 Aligned_cols=166 Identities=11% Similarity=-0.011 Sum_probs=127.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q psy3224 1012 EQKNLLDKAHDTFSQAIKKCP-HSVPLWIMLANLEERRKMLIKARSVLEKGRLR------NPNCAELWLAAIRVEIRAGL 1084 (1278)
Q Consensus 1012 ~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~------~p~~~~~~~~l~~~~~~~g~ 1084 (1278)
...|++++|...++.... +| ....++..+|.++...|++++|+..|++++.. .|....++..++.++...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467899999996555444 44 56788889999999999999999999999983 33445678888999999999
Q ss_pred HHHHHHHHHHHHHHC---CCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccc
Q psy3224 1085 KDIANTMMAKALQEC---PNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCM 1161 (1278)
Q Consensus 1085 ~~~A~~~~~kal~~~---P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~ 1161 (1278)
+++|...+.+++... ++++...
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~------------------------------------------------------- 106 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAA------------------------------------------------------- 106 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHH-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHH-------------------------------------------------------
Confidence 999999999988763 3221000
Q ss_pred cccchhhhhhhhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh------HHHHHHHHHHHhCCHHHHHHHH
Q psy3224 1162 GVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGD------AWAYFYKFEIINGTEETQAEVK 1235 (1278)
Q Consensus 1162 ~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d------~~~~l~~~~~~~G~~~~A~~~l 1235 (1278)
..++..+|.++...|++++|+.+|++++.+.+..++ ++..++.++...|++++|..++
T Consensus 107 ----------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 170 (203)
T 3gw4_A 107 ----------------SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHW 170 (203)
T ss_dssp ----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 117889999999999999999999999986543332 4678899999999999999999
Q ss_pred HHHHHhCCCCcchh
Q psy3224 1236 KRCLAAEPKHGENW 1249 (1278)
Q Consensus 1236 ~ka~~~~P~~~~~w 1249 (1278)
++++.+....+..|
T Consensus 171 ~~al~~~~~~~~~~ 184 (203)
T 3gw4_A 171 LRARDIFAELEDSE 184 (203)
T ss_dssp HHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCCHH
Confidence 99999766555443
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.94 E-value=6.8e-09 Score=100.34 Aligned_cols=111 Identities=12% Similarity=0.075 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS-------VPLWIM 1040 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~ 1040 (1278)
..++.+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.+|.+++...|.+ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 4555666666666666666666666666666666666666666666666666666666666666554 666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy3224 1041 LANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVE 1079 (1278)
Q Consensus 1041 la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~ 1079 (1278)
+|.++...|++++|+.+|++++...| ++..+..++.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 66666666666666666666666666 455555554443
No 178
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.94 E-value=3.3e-08 Score=118.11 Aligned_cols=201 Identities=13% Similarity=0.037 Sum_probs=165.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 830 LRAAYFEKNHGTRESLETLLQKAVAHCPKSE-----------------VLWLMGAKSKWLAGDVPAARGILSLAFQANPN 892 (1278)
Q Consensus 830 l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~-----------------~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 892 (1278)
+..+.-....|++++|++.|.++++..|... .++..+|.+|...|++++|.+.|.+++...+.
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3344555677999999999999999887642 35788999999999999999999999887654
Q ss_pred CH------HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 893 SE------EIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT 966 (1278)
Q Consensus 893 ~~------~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 966 (1278)
.. .+...++.++...|+++.|+.+++.++.........+....++..+|.++...|++.+|..++.+++.....
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 88 FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 32 244567777788899999999999998776655566667888999999999999999999999999876321
Q ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---Ch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 967 -------PRVMIQSAKLEWCLDNLERALQLLDEAIKVFP---DF----AKLWMMKGQIEEQKNLLDKAHDTFSQAIKK 1030 (1278)
Q Consensus 967 -------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p---~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 1030 (1278)
..++...+.++...|++++|..++++++...+ +. ..++..+|.++...+++.+|...|..++..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 47889999999999999999999999987643 22 466777888889999999999999999864
No 179
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.94 E-value=2.4e-09 Score=106.23 Aligned_cols=91 Identities=14% Similarity=0.028 Sum_probs=66.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy3224 979 CLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLL----------DKAHDTFSQAIKKCPHSVPLWIMLANLEERR 1048 (1278)
Q Consensus 979 ~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~la~l~~~~ 1048 (1278)
+.+.+++|+..++++++.+|+++.+|+.+|.++...+++ ++|+..|+++++++|++..+|+.+|.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 345677788888888888888888888888887777664 4777777777777777777777777777665
Q ss_pred C-----------CHHHHHHHHHHHHHhCCCCH
Q psy3224 1049 K-----------MLIKARSVLEKGRLRNPNCA 1069 (1278)
Q Consensus 1049 g-----------~~~~A~~~l~kal~~~p~~~ 1069 (1278)
| ++++|+.+|++|+.++|++.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 4 66666666666666666653
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.92 E-value=8.7e-10 Score=127.31 Aligned_cols=166 Identities=11% Similarity=0.061 Sum_probs=102.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 883 LSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARA 962 (1278)
Q Consensus 883 l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 962 (1278)
+...+...+.....+..++..+...|++++|+..|++++ ...|.+.. +...+++.++...+.
T Consensus 168 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al------~~~p~~~~--------~~~~~~~~~~~~~l~---- 229 (338)
T 2if4_A 168 SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAI------AYMGDDFM--------FQLYGKYQDMALAVK---- 229 (338)
T ss_dssp TBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHH------HHSCHHHH--------HTCCHHHHHHHHHHH----
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH------HHhccchh--------hhhcccHHHHHHHHH----
Confidence 333344456678889999999999999999999999998 66666541 223344444443332
Q ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy3224 963 SAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLA 1042 (1278)
Q Consensus 963 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 1042 (1278)
..+|+.+|.++...|++++|+..|++++..+|++..+|+.+|.++...|++++|+..|+++++++|++..++..++
T Consensus 230 ----~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~ 305 (338)
T 2if4_A 230 ----NPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELR 305 (338)
T ss_dssp ----THHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 2478899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HHcCCHHHHHHHHHHHHHhCCCCHH
Q psy3224 1043 NLE-ERRKMLIKARSVLEKGRLRNPNCAE 1070 (1278)
Q Consensus 1043 ~l~-~~~g~~~~A~~~l~kal~~~p~~~~ 1070 (1278)
.+. ...+..+++...|.+++...|+++.
T Consensus 306 ~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 306 ALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 884 4567788999999999999997653
No 181
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.91 E-value=1e-08 Score=122.61 Aligned_cols=204 Identities=13% Similarity=0.102 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Q psy3224 861 VLWLMGAKSKWLAGDVPAARGILSLAFQANPNSE-----------------EIWLAAVKLESENNEYERARRLLAKARAQ 923 (1278)
Q Consensus 861 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-----------------~~~~~la~l~~~~g~~~~A~~~l~~al~~ 923 (1278)
...+.-|..+...|++++|++.|.++++..|... .++..++.+|...|++++|..++.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3456678888899999999999999999887642 35778888888899999999888888754
Q ss_pred hhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 924 AGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-------PRVMIQSAKLEWCLDNLERALQLLDEAIKV 996 (1278)
Q Consensus 924 ~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-------~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 996 (1278)
...+........+...++.++...|++++|+.++.+++...+. ..++..+|.++...|++.+|..++++++..
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 4322221122234455666777778888888888888765321 467778888888888888888888887764
Q ss_pred C------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 997 F------PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKC---PHS----VPLWIMLANLEERRKMLIKARSVLEKGRL 1063 (1278)
Q Consensus 997 ~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~----~~~~~~la~l~~~~g~~~~A~~~l~kal~ 1063 (1278)
. +....++...+.+|...|++.+|..+|++++... +.. ..++..++.++...+++.+|...|.+++.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 2335777888888888888888888888877653 222 23455667777778888888888877776
Q ss_pred h
Q psy3224 1064 R 1064 (1278)
Q Consensus 1064 ~ 1064 (1278)
.
T Consensus 245 ~ 245 (434)
T 4b4t_Q 245 S 245 (434)
T ss_dssp H
T ss_pred H
Confidence 4
No 182
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.90 E-value=1.3e-08 Score=98.19 Aligned_cols=113 Identities=15% Similarity=-0.005 Sum_probs=103.6
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHH
Q psy3224 999 DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNC-------AEL 1071 (1278)
Q Consensus 999 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~-------~~~ 1071 (1278)
..+..+..+|.++...|++++|+..|.+++..+|.++.++..+|.++...|++++|+.+|++++...|.+ +.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999999999999998877 889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Q psy3224 1072 WLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFL 1112 (1278)
Q Consensus 1072 ~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~ 1112 (1278)
+..++.++...|++++|...|.+++...| ++.++..+..+
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 99999999999999999999999999998 56666655443
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.89 E-value=2.3e-09 Score=102.62 Aligned_cols=93 Identities=16% Similarity=0.124 Sum_probs=70.6
Q ss_pred cCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 980 LDNLERALQLLDEAIKV---FPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARS 1056 (1278)
Q Consensus 980 ~g~~~~A~~~l~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~ 1056 (1278)
.|++++|+.+|+++++. +|+++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 56777778888888877 477777888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCCHHHH
Q psy3224 1057 VLEKGRLRNPNCAELW 1072 (1278)
Q Consensus 1057 ~l~kal~~~p~~~~~~ 1072 (1278)
.|++++...|+++.+.
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 8888888878777653
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.89 E-value=1.1e-08 Score=119.51 Aligned_cols=140 Identities=14% Similarity=0.014 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Q psy3224 934 EEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQ 1013 (1278)
Q Consensus 934 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~ 1013 (1278)
...|..+|..+...|++++|+..|++++...+... +...........|.+..+|..+|.++..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------------AAAEDADGAKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------------HHSCHHHHGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------------cccChHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566667777777777777777777665432110 0111233334667778888888888888
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 1014 KNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANT 1090 (1278)
Q Consensus 1014 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 1090 (1278)
.|++++|+.+|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|++..++..++.++...++.+++..
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888887777776654
No 185
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.88 E-value=5.7e-10 Score=135.11 Aligned_cols=132 Identities=11% Similarity=-0.008 Sum_probs=112.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy3224 970 MIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRK 1049 (1278)
Q Consensus 970 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g 1049 (1278)
+..+|..+...|++++|+..|+++++.+|++..+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44456667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHHCCC
Q psy3224 1050 MLIKARSVLEKGRLRNPNCAELWLAAIRV--EIRAGLKDIANTMMA-----------KALQECPN 1101 (1278)
Q Consensus 1050 ~~~~A~~~l~kal~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------kal~~~P~ 1101 (1278)
++++|+..|+++++++|++..++..++.+ +...|++++|+..++ +++...|+
T Consensus 89 ~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp CHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99999999999999999988888888877 788899999999998 66666655
No 186
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.86 E-value=9.6e-09 Score=96.24 Aligned_cols=101 Identities=18% Similarity=0.295 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH--SVPLWIMLANLE 1045 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~l~ 1045 (1278)
.+|..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+|+++++..|. +..+|..++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 455666667777777777777777777777777777777777777777777777777777777777 777777777777
Q ss_pred HHc-CCHHHHHHHHHHHHHhCCCC
Q psy3224 1046 ERR-KMLIKARSVLEKGRLRNPNC 1068 (1278)
Q Consensus 1046 ~~~-g~~~~A~~~l~kal~~~p~~ 1068 (1278)
... |++++|+..|++++...|.+
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCC
Confidence 777 77777777777777777754
No 187
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.80 E-value=1.3e-09 Score=131.98 Aligned_cols=133 Identities=13% Similarity=0.051 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHc
Q psy3224 936 IWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQK 1014 (1278)
Q Consensus 936 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~ 1014 (1278)
.+..+|.++...|++++|+..|+++++..|+ ..+|..+|.++...|++++|+..|+++++.+|+++.+|..+|.++...
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3455666777899999999999999999986 799999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q psy3224 1015 NLLDKAHDTFSQAIKKCPHSVPLWIMLANL--EERRKMLIKARSVLE-----------KGRLRNPNC 1068 (1278)
Q Consensus 1015 g~~~~A~~~~~~al~~~p~~~~~~~~la~l--~~~~g~~~~A~~~l~-----------kal~~~p~~ 1068 (1278)
|++++|+..|+++++.+|++..++..++.+ +...|++++|+..++ +++...|+.
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 999999999999999999999999988888 888899999999999 777777653
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.80 E-value=3.5e-08 Score=99.02 Aligned_cols=130 Identities=12% Similarity=0.020 Sum_probs=64.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q psy3224 970 MIQSAKLEWCLDNLERALQLLDEAIKVFPDF------AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS------VPL 1037 (1278)
Q Consensus 970 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 1037 (1278)
+..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|...|++++...+.. ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 3334444444444444444444444433211 1344445555555555555555555555443321 334
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Q psy3224 1038 WIMLANLEERRKMLIKARSVLEKGRLRNPN------CAELWLAAIRVEIRAGLKDIANTMMAKALQEC 1099 (1278)
Q Consensus 1038 ~~~la~l~~~~g~~~~A~~~l~kal~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~ 1099 (1278)
+..+|.++...|++++|+.++++++...+. ...++..++.++...|++++|...++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 455555555566666666666555544221 12345555666666666666666666666544
No 189
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.78 E-value=1.6e-08 Score=100.34 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=87.8
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 1012 EQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKML----------IKARSVLEKGRLRNPNCAELWLAAIRVEIR 1081 (1278)
Q Consensus 1012 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~----------~~A~~~l~kal~~~p~~~~~~~~l~~~~~~ 1081 (1278)
.+.+.+++|+..|+++++.+|+++.+|+.+|.++...+++ ++|+..|+++++++|++..+|+.++.+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3557789999999999999999999999999999988764 599999999999999999999999999998
Q ss_pred cC-----------CHHHHHHHHHHHHHHCCCcHHHHH
Q psy3224 1082 AG-----------LKDIANTMMAKALQECPNAGILWA 1107 (1278)
Q Consensus 1082 ~g-----------~~~~A~~~~~kal~~~P~~~~~~~ 1107 (1278)
.| ++++|+.+|+++++++|++...+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 75 899999999999999999875554
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.78 E-value=6.1e-09 Score=99.57 Aligned_cols=95 Identities=18% Similarity=0.135 Sum_probs=86.4
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy3224 1013 QKNLLDKAHDTFSQAIKK---CPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIAN 1089 (1278)
Q Consensus 1013 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~ 1089 (1278)
..|++++|+.+|+++++. +|+++.+|..+|.++...|++++|+.+|++++..+|+++.++..++.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 368899999999999999 58889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCcHHHHH
Q psy3224 1090 TMMAKALQECPNAGILWA 1107 (1278)
Q Consensus 1090 ~~~~kal~~~P~~~~~~~ 1107 (1278)
..+.+++...|+++.+..
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999999987654
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.77 E-value=5e-08 Score=97.86 Aligned_cols=133 Identities=11% Similarity=-0.059 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh------H
Q psy3224 935 EIWLAAVKLESENNEYERARRLLAKARASAPT-------PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF------A 1001 (1278)
Q Consensus 935 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~ 1001 (1278)
.++..++.++...|++++|+..+++++...+. ..++..+|.++...|++++|+.++++++...+.. .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34556666666666666666666666665432 2466777777777788888888887777754432 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 1002 KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH------SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPN 1067 (1278)
Q Consensus 1002 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~ 1067 (1278)
.++..+|.++...|++++|+..+++++...+. ...++..++.++...|++++|+.++++++.+...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 67777888888888888888888888766432 1456677888888888888888888888876543
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.77 E-value=2.3e-08 Score=116.59 Aligned_cols=138 Identities=11% Similarity=0.013 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEE 1046 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~ 1046 (1278)
...|..+|..+...|++++|+..|+++++..+..+ +...........|.+..+|..+|.++.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777777777777777766544321 011122333467778899999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHH
Q psy3224 1047 RRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKS 1122 (1278)
Q Consensus 1047 ~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A 1122 (1278)
..|++++|+.+|++++.++|+++.+|+.++.++...|++++|+..|+++++..|++..++..++.++...+++.++
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999888877655555544
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.63 E-value=2.2e-07 Score=88.08 Aligned_cols=83 Identities=17% Similarity=0.134 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 985 RALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLR 1064 (1278)
Q Consensus 985 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~ 1064 (1278)
.|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++..+|.+..+|..+|.++...|++++|+..|++++.+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46788888888888888888888888888899999999999998888888888888888888888999999998888888
Q ss_pred CCC
Q psy3224 1065 NPN 1067 (1278)
Q Consensus 1065 ~p~ 1067 (1278)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 774
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.58 E-value=4.8e-07 Score=81.22 Aligned_cols=83 Identities=19% Similarity=0.196 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy3224 1000 FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVE 1079 (1278)
Q Consensus 1000 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~ 1079 (1278)
++.++..+|.++...|++++|+.+|++++..+|.++.+|..+|.++...|++++|+.+|++++..+|+++.++..++.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45666667777777777777777777777777777777777777777777777777777777777777777766666666
Q ss_pred HHc
Q psy3224 1080 IRA 1082 (1278)
Q Consensus 1080 ~~~ 1082 (1278)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 544
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.54 E-value=4.8e-08 Score=91.61 Aligned_cols=90 Identities=13% Similarity=0.020 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q psy3224 1001 AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNC------AELWLA 1074 (1278)
Q Consensus 1001 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~------~~~~~~ 1074 (1278)
...|..+|.++...|++++|+..|++++..+|.++.+|..+|.++...|++++|+..|++++.++|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666 555555
Q ss_pred HHHHHHHcCCHHHHHH
Q psy3224 1075 AIRVEIRAGLKDIANT 1090 (1278)
Q Consensus 1075 l~~~~~~~g~~~~A~~ 1090 (1278)
++.++...|+++.|+.
T Consensus 84 ~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHhHhhhHh
Confidence 5555555555444433
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=5.6e-08 Score=91.17 Aligned_cols=94 Identities=10% Similarity=-0.026 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS------VPLWIM 1040 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~ 1040 (1278)
...|..+|.++...|++++|+..|++++...|+++.+|..+|.++...|++++|+..|++++..+|++ ..++..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 46777888888888888999999999998889888889999999999999999999999999988888 778888
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q psy3224 1041 LANLEERRKMLIKARSVLEK 1060 (1278)
Q Consensus 1041 la~l~~~~g~~~~A~~~l~k 1060 (1278)
++.++...|+++.|+..|++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 88888888877776665543
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.50 E-value=1.8e-07 Score=86.45 Aligned_cols=77 Identities=13% Similarity=0.166 Sum_probs=70.5
Q ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchh
Q psy3224 1173 KCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENW 1249 (1278)
Q Consensus 1173 ~~p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w 1249 (1278)
.+|+++.+++.+|.+|+..|++++|+.+|+++++++|+++.+|..++.++...|++++|...+++++++.|..+..+
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999988766554
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.47 E-value=1.5e-06 Score=77.95 Aligned_cols=83 Identities=14% Similarity=0.245 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEE 1046 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~ 1046 (1278)
...+..+|.++...|++++|+.+|++++...|+++.++..+|.++...|++++|+..|++++..+|.+..++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 46677777788888888888888888888888888888888888888888888888888888888888888888887776
Q ss_pred HcC
Q psy3224 1047 RRK 1049 (1278)
Q Consensus 1047 ~~g 1049 (1278)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 199
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.47 E-value=3.2e-06 Score=91.33 Aligned_cols=106 Identities=11% Similarity=-0.005 Sum_probs=76.3
Q ss_pred hCCChHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----CCHHHHHHH
Q psy3224 996 VFPDFAKLWMMKGQIEEQ---K--N------LLDKAHDTFSQAIKKCPH--SVPLWIMLANLEERR-----KMLIKARSV 1057 (1278)
Q Consensus 996 ~~p~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~~~~~~la~l~~~~-----g~~~~A~~~ 1057 (1278)
..|++++++++.|.+... . | ....|+..++++++++|+ +..+|..+|.+|... |+.++|..+
T Consensus 147 ~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 147 CTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA 226 (301)
T ss_dssp CCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH
T ss_pred cCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH
Confidence 456666666665554421 1 2 256777778888888887 566888888888774 788888888
Q ss_pred HHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCC
Q psy3224 1058 LEKGRLRNPNC-AELWLAAIRVEIR-AGLKDIANTMMAKALQECPN 1101 (1278)
Q Consensus 1058 l~kal~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~kal~~~P~ 1101 (1278)
|++++.++|+. ...++.++.+++. .|+++++..++++++...|.
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 88888888864 7777888887766 47888888888888887766
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.44 E-value=1.2e-06 Score=82.98 Aligned_cols=85 Identities=12% Similarity=0.089 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy3224 1019 KAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQE 1098 (1278)
Q Consensus 1019 ~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~ 1098 (1278)
.|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++..+|++..+|..++.++...|++++|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcH
Q psy3224 1099 CPNAG 1103 (1278)
Q Consensus 1099 ~P~~~ 1103 (1278)
.|...
T Consensus 83 ~~~~~ 87 (115)
T 2kat_A 83 AQSRG 87 (115)
T ss_dssp HHHHT
T ss_pred ccccc
Confidence 87543
No 201
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.44 E-value=3.5e-06 Score=80.45 Aligned_cols=119 Identities=17% Similarity=0.197 Sum_probs=98.7
Q ss_pred hCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHHHhcCCHHHHHHH
Q psy3224 775 TFPSKKSIWLRAAYFEKNHGTR------ESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETL 848 (1278)
Q Consensus 775 ~~P~~~~~~~~la~~~~~~g~~------~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~ 848 (1278)
..|+|.+.|..+...+...|+. +..+.+|++++...|.... ........+|+.++.+. ..++.++|+++
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~----~~wrrYI~LWIrYA~~~-ei~D~d~aR~v 82 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY----GQNESFARIQVRFAELK-AIQEPDDARDY 82 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG----TTCHHHHHHHHHHHHHH-HHHCGGGCHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc----ccHHHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 4688999999999998888998 8888999999998887631 12223356899999884 55999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy3224 849 LQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWL 898 (1278)
Q Consensus 849 ~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~ 898 (1278)
|+.+++.+.....+|+++|++..++|++..|+.++.+++..+|....++.
T Consensus 83 y~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 83 FQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 99999998899999999999999999999999999999999998665543
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.39 E-value=1.2e-06 Score=80.72 Aligned_cols=72 Identities=17% Similarity=0.078 Sum_probs=56.9
Q ss_pred hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 996 VFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPN 1067 (1278)
Q Consensus 996 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~ 1067 (1278)
.+|+++.+|+.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|++++.+.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 367778888888888888888888888888888888888888888888888888888888888888877653
No 203
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.35 E-value=6.8e-07 Score=81.98 Aligned_cols=66 Identities=24% Similarity=0.244 Sum_probs=34.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy3224 973 SAKLEWCLDNLERALQLLDEAIKVFPDFAK-LWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLW 1038 (1278)
Q Consensus 973 la~~~~~~g~~~~A~~~l~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 1038 (1278)
.|..+...|++++|+..|+++++.+|+++. +|+.+|.++...|++++|+..|++++..+|++..++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 344444555555555555555555555555 555555555555555555555555555555554443
No 204
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.34 E-value=7.6e-07 Score=81.64 Aligned_cols=90 Identities=10% Similarity=0.032 Sum_probs=73.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy3224 1005 MMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVP-LWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAG 1083 (1278)
Q Consensus 1005 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g 1083 (1278)
+..|.++...|++++|+..|+++++.+|.++. +|..+|.++...|++++|+..|++++.++|++..++.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677888888999999999999999998888 88888999888999999999999999999888877633 4
Q ss_pred CHHHHHHHHHHHHHHCCCc
Q psy3224 1084 LKDIANTMMAKALQECPNA 1102 (1278)
Q Consensus 1084 ~~~~A~~~~~kal~~~P~~ 1102 (1278)
.+.++...|.+++..+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 5566777777777666654
No 205
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.34 E-value=2.1e-05 Score=84.99 Aligned_cols=86 Identities=16% Similarity=0.264 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHH
Q psy3224 983 LERALQLLDEAIKVFPD--FAKLWMMKGQIEEQK-----NLLDKAHDTFSQAIKKCPHS-VPLWIMLANLEER-RKMLIK 1053 (1278)
Q Consensus 983 ~~~A~~~l~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~l~~~-~g~~~~ 1053 (1278)
...|...++++++++|+ ++.+|..+|.+|... |+.++|+.+|+++++++|+. ...++.+|..+.. .|+++.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 57899999999999998 677999999999884 99999999999999999975 9999999999987 599999
Q ss_pred HHHHHHHHHHhCCCC
Q psy3224 1054 ARSVLEKGRLRNPNC 1068 (1278)
Q Consensus 1054 A~~~l~kal~~~p~~ 1068 (1278)
|...+++++...|..
T Consensus 259 a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 259 FDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999999988763
No 206
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.31 E-value=2.6e-05 Score=88.09 Aligned_cols=151 Identities=15% Similarity=0.124 Sum_probs=81.6
Q ss_pred HHHHHhCCCcHHHHH--HHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc----HHHHHHHHHHH
Q psy3224 850 QKAVAHCPKSEVLWL--MGAKSKWLAG---DVPAARGILSLAFQANPNSEEIWLAAVKLESENNE----YERARRLLAKA 920 (1278)
Q Consensus 850 ~~al~~~P~~~~~~~--~la~~~~~~g---~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~----~~~A~~~l~~a 920 (1278)
+++....|.+..+|- ..|..++..+ ...+|+.+|+++++.+|++..+|-.++.++..... .......+..+
T Consensus 184 ~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp HHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 345566677665554 3345555444 45899999999999999998888877776651100 00111111111
Q ss_pred HHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCh
Q psy3224 921 RAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF 1000 (1278)
Q Consensus 921 l~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 1000 (1278)
+.....+...|.+ +.++..++..+...|++++|+..+++++.++|+
T Consensus 264 ~~a~~a~~~~~~~---------------------------------a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s- 309 (372)
T 3ly7_A 264 IDNIVTLPELNNL---------------------------------SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS- 309 (372)
T ss_dssp HHHHHTCGGGTTC---------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHhcccCCcC---------------------------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-
Confidence 1111112233334 444545555444555555555555555555543
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy3224 1001 AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS 1034 (1278)
Q Consensus 1001 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 1034 (1278)
...|..+|.++...|++++|.+.|.+|+.++|..
T Consensus 310 ~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 310 WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 4455555555555555555555555555555543
No 207
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=98.30 E-value=6.6e-06 Score=78.62 Aligned_cols=111 Identities=16% Similarity=0.195 Sum_probs=86.1
Q ss_pred hcCCCcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 928 QANPNSEEIWLAAVKLESENNEY------ERARRLLAKARASAPT---------PRVMIQSAKLEWCLDNLERALQLLDE 992 (1278)
Q Consensus 928 ~~~p~~~~~~~~la~~~~~~g~~------~~A~~~l~~al~~~p~---------~~~~~~la~~~~~~g~~~~A~~~l~~ 992 (1278)
-..|++++.|..++..+...|+. ++.+.+|++++...|. ..+|..+|.+ ...++.++|+.+|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 45789999999999988888888 8888999999988663 4677777765 345788888888888
Q ss_pred HHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy3224 993 AIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039 (1278)
Q Consensus 993 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 1039 (1278)
++..+...+.+|..+|++..++|+...|++++.+++..+|.....+.
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le 132 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE 132 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence 87777777888888888888888888888888888888887665443
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.26 E-value=6.9e-06 Score=98.58 Aligned_cols=137 Identities=9% Similarity=-0.046 Sum_probs=104.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcHHHHHHHH
Q psy3224 1044 LEERRKMLIKARSVLEKGRLR-----NPNCA---ELWLAAIRVEIRAGLKDIANTMMAKALQEC-----PNAGILWAEAI 1110 (1278)
Q Consensus 1044 l~~~~g~~~~A~~~l~kal~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~kal~~~-----P~~~~~~~~~~ 1110 (1278)
.+..+|++++|+.++++++.+ .|+++ .++..++.+|..+|++++|+.++++++... |+++.+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a---- 393 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG---- 393 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH----
Confidence 345678888888888888864 45665 457788889999999999999998887652 2333222
Q ss_pred hccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHh
Q psy3224 1111 FLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWC 1190 (1278)
Q Consensus 1111 ~~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~ 1190 (1278)
..+++||.+|..
T Consensus 394 --------------------------------------------------------------------~~l~nLa~~~~~ 405 (490)
T 3n71_A 394 --------------------------------------------------------------------MAVMRAGLTNWH 405 (490)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHHH
T ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Confidence 278999999999
Q ss_pred cCCHHHHHHHHHHHHhh-----CCCChh---HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchhhhh
Q psy3224 1191 ENKNQKCREWFNRTVKI-----DPDLGD---AWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENWCRV 1252 (1278)
Q Consensus 1191 ~g~~~~A~~~~~kal~~-----~P~~~d---~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w~~~ 1252 (1278)
+|++++|..+|++|+.+ -|++++ ....+..++..+|.+++|+.++.++.+..-++.++|-.-
T Consensus 406 ~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~~~~ 475 (490)
T 3n71_A 406 AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQVMA 475 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-------
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 99999999999999973 677765 567888999999999999999999988776777777543
No 209
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.24 E-value=1.7e-05 Score=78.01 Aligned_cols=109 Identities=18% Similarity=0.078 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH----cCCHHHHHHHH
Q psy3224 949 EYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQ----KNLLDKAHDTF 1024 (1278)
Q Consensus 949 ~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~ 1024 (1278)
++++|+..|+++.+..... .. ++.++...+..++|+.+|+++... .++.+++.+|.+|.. .+++++|+.+|
T Consensus 10 d~~~A~~~~~~aa~~g~~~-a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF-GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT-HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHh-hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 4455555555555543211 11 555555555555566666666554 445566666666655 55666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q psy3224 1025 SQAIKKCPHSVPLWIMLANLEER----RKMLIKARSVLEKGRLR 1064 (1278)
Q Consensus 1025 ~~al~~~p~~~~~~~~la~l~~~----~g~~~~A~~~l~kal~~ 1064 (1278)
+++.+. .++.++..++.+|.. .+++++|+.+|+++.+.
T Consensus 85 ~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 85 SKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 666554 345556666666665 55666666666666554
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.22 E-value=2.7e-05 Score=87.91 Aligned_cols=122 Identities=15% Similarity=0.117 Sum_probs=96.0
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC-----C---HHHHHHHHHH--HHHhCCCCHHHHHHHHHHHHHcCCH
Q psy3224 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN-----L---LDKAHDTFSQ--AIKKCPHSVPLWIMLANLEERRKML 1051 (1278)
Q Consensus 982 ~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g-----~---~~~A~~~~~~--al~~~p~~~~~~~~la~l~~~~g~~ 1051 (1278)
.+.+|+.+|+++++++|+++.+|..++.++.... . .......+.. ++...|.++.++..++.++...|++
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~ 293 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKT 293 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCH
Confidence 4578999999999999999888888777764211 1 1111112221 2245688999999999888888999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH
Q psy3224 1052 IKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGI 1104 (1278)
Q Consensus 1052 ~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~ 1104 (1278)
++|+..+++++.++|+ ...|..++.++...|++++|.+.|.+|+.++|..+.
T Consensus 294 d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 294 DESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 9999999999999975 667788899999999999999999999999998753
No 211
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.21 E-value=2.3e-05 Score=76.95 Aligned_cols=111 Identities=19% Similarity=0.058 Sum_probs=99.6
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q psy3224 981 DNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER----RKMLIKARS 1056 (1278)
Q Consensus 981 g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~----~g~~~~A~~ 1056 (1278)
+++++|+.+|+++.+....... +|.+|...+.+++|+.+|+++.+. .++.+++.++.+|.. .+++++|+.
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4789999999999988654333 999999989999999999999987 678999999999998 899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHC
Q psy3224 1057 VLEKGRLRNPNCAELWLAAIRVEIR----AGLKDIANTMMAKALQEC 1099 (1278)
Q Consensus 1057 ~l~kal~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~kal~~~ 1099 (1278)
+|+++.+. .++..+..++.++.. .+++++|..+|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999986 678899999999999 899999999999998874
No 212
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.13 E-value=0.00032 Score=84.77 Aligned_cols=178 Identities=13% Similarity=0.043 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHHhhhhhhcCC
Q psy3224 862 LWLMGAKSKWLAGDVPAARGILSLAFQAN-PNSEEIWLAAVKLESENN---------EYERARRLLAKARAQAGAFQANP 931 (1278)
Q Consensus 862 ~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~~~~~~~~la~l~~~~g---------~~~~A~~~l~~al~~~~~l~~~p 931 (1278)
.+......+.+.|++++|+.+|+.+.+.. +-+...|..+...+...+ .++.|..+|+++.. ...+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~-----~G~~ 102 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV-----DKVV 102 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH-----TTCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH-----hCCC
Confidence 34555677788999999999999888753 225777877777766443 47788888888762 3345
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHH
Q psy3224 932 NSEEIWLAAVKLESENNEYERARRLLAKARAS--APTPRVMIQSAKLEWCLDNLERALQLLDEAIKV--FPDFAKLWMMK 1007 (1278)
Q Consensus 932 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~l 1007 (1278)
.+...|..++..+.+.|++++|..+|+++... .|+...|..+...+...|+.++|..+|+++... .|+ ...|..+
T Consensus 103 Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~L 181 (501)
T 4g26_A 103 PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAAL 181 (501)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHH
Confidence 57788888888888999999999999888875 477888888888888889999999999888774 344 6778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Q psy3224 1008 GQIEEQKNLLDKAHDTFSQAIKK--CPHSVPLWIMLANLEE 1046 (1278)
Q Consensus 1008 a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~l~~ 1046 (1278)
...+.+.|+.++|..+|++..+. .| +...+..+...+.
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~~g~~p-s~~T~~~l~~~F~ 221 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRDLVRQV-SKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTSSB-CHHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHhCCCc-CHHHHHHHHHHHh
Confidence 88888889999999888887654 34 3445555544443
No 213
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.11 E-value=0.00019 Score=86.82 Aligned_cols=161 Identities=16% Similarity=0.084 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHh--CC
Q psy3224 897 WLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENN---------EYERARRLLAKARAS--AP 965 (1278)
Q Consensus 897 ~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~l~~al~~--~p 965 (1278)
+......+.+.|++++|+.+|+++.. ...+.+...|..+..++...+ ..++|..+|+++... .|
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~-----~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARR-----NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHH-----HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence 44455566666666666666666652 223344555555555554332 245566666555544 34
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Q psy3224 966 TPRVMIQSAKLEWCLDNLERALQLLDEAIKV--FPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKC-PHSVPLWIMLA 1042 (1278)
Q Consensus 966 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 1042 (1278)
+...|..+...+...|++++|..+|+++... .| +...|..+...|.+.|++++|..+|....+.. .-+...|..+.
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li 182 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALL 182 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 5555555555555555555555555555443 22 24455555555555555555555555554432 11344555555
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q psy3224 1043 NLEERRKMLIKARSVLEKGRL 1063 (1278)
Q Consensus 1043 ~l~~~~g~~~~A~~~l~kal~ 1063 (1278)
..+.+.|+.++|..+|++...
T Consensus 183 ~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 183 KVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHH
Confidence 555555555555555555444
No 214
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.05 E-value=1.4e-05 Score=96.00 Aligned_cols=129 Identities=8% Similarity=0.002 Sum_probs=80.0
Q ss_pred HHcCCHHHHHHHHHHHHHh-----CCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHH
Q psy3224 978 WCLDNLERALQLLDEAIKV-----FPD---FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKK-----CPHSV---PLWIML 1041 (1278)
Q Consensus 978 ~~~g~~~~A~~~l~~al~~-----~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l 1041 (1278)
..+|++++|+.++++++.. .|+ -...+..+|.+|..+|++++|+.++++++.. .|+++ ..+..+
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3455566666666555553 222 2455666677777777777777777777643 24443 345567
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH
Q psy3224 1042 ANLEERRKMLIKARSVLEKGRLR-----NPNCAEL---WLAAIRVEIRAGLKDIANTMMAKALQECPNAGILW 1106 (1278)
Q Consensus 1042 a~l~~~~g~~~~A~~~l~kal~~-----~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~ 1106 (1278)
|.+|..+|++++|..+|++|+.+ .|+++.+ ...+..++..++.+++|..+|.++.+..-++..+|
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~ 472 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQ 472 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 77788888888888888887763 4666643 45566677777888888888888766543333333
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.02 E-value=2.2e-05 Score=71.00 Aligned_cols=71 Identities=10% Similarity=0.061 Sum_probs=67.4
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Q psy3224 1174 CEHDPHVLLAVSKLFWCENK---NQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPK 1244 (1278)
Q Consensus 1174 ~p~~~~~l~~lg~~~~~~g~---~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~ 1244 (1278)
+|++++++..+|.+++..++ .++|..+|+++++++|+++.++..++..+...|++++|..+++++++.+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 58899999999999976665 799999999999999999999999999999999999999999999999999
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.88 E-value=5.7e-05 Score=68.28 Aligned_cols=71 Identities=14% Similarity=-0.111 Sum_probs=46.6
Q ss_pred CCChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 997 FPDFAKLWMMKGQIEEQKNL---LDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPN 1067 (1278)
Q Consensus 997 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~ 1067 (1278)
+|+++.++..+|.++...++ ..+|..+++++++.+|+++.+++.+|.++...|++++|+..|++++..+|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666666666666654444 466666666666666666666666666666666666666666666666665
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.81 E-value=0.00016 Score=70.81 Aligned_cols=88 Identities=10% Similarity=-0.107 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy3224 984 ERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN---LLDKAHDTFSQAIKKC-P-HSVPLWIMLANLEERRKMLIKARSVL 1058 (1278)
Q Consensus 984 ~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~l~~~~g~~~~A~~~l 1058 (1278)
..+...|.+.+...|.+.++.+.+|+++.+.. ++.+++.+|+.+++.+ | ++.+.++.+|..+.+.|++++|+.++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 44555566666666666666666666666666 4446666666666666 5 34566666666666666666666666
Q ss_pred HHHHHhCCCCHHH
Q psy3224 1059 EKGRLRNPNCAEL 1071 (1278)
Q Consensus 1059 ~kal~~~p~~~~~ 1071 (1278)
+++++..|++..+
T Consensus 95 ~~lL~ieP~n~QA 107 (152)
T 1pc2_A 95 RGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHCTTCHHH
T ss_pred HHHHhcCCCCHHH
Confidence 6666666666655
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.75 E-value=9.9e-05 Score=68.36 Aligned_cols=76 Identities=13% Similarity=0.191 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchh
Q psy3224 1177 DPHVLLAVSKLFWCENKNQKCREWFNRTVKID-------PDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENW 1249 (1278)
Q Consensus 1177 ~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~-------P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~~P~~~~~w 1249 (1278)
++.-++.+|..++..++|..|+.||+.|++.. +...+++..++.++.+.|+.+.|..++++++.+.|++....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 45588999999999999999999999999863 23467999999999999999999999999999999998775
Q ss_pred hhh
Q psy3224 1250 CRV 1252 (1278)
Q Consensus 1250 ~~~ 1252 (1278)
..+
T Consensus 84 ~n~ 86 (104)
T 2v5f_A 84 GNL 86 (104)
T ss_dssp HHH
T ss_pred hhH
Confidence 443
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.68 E-value=0.00023 Score=69.57 Aligned_cols=92 Identities=16% Similarity=-0.037 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHH
Q psy3224 1016 LLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRK---MLIKARSVLEKGRLRN-P-NCAELWLAAIRVEIRAGLKDIANT 1090 (1278)
Q Consensus 1016 ~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g---~~~~A~~~l~kal~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~ 1090 (1278)
....+++.|.+.+...|.+..+.+.+|+++.+.+ +.++++.+|+.++..+ | ++.+.++.++..+.+.|++++|..
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3556888899999989999999999999999988 6679999999999998 7 567899999999999999999999
Q ss_pred HHHHHHHHCCCcHHHHH
Q psy3224 1091 MMAKALQECPNAGILWA 1107 (1278)
Q Consensus 1091 ~~~kal~~~P~~~~~~~ 1107 (1278)
+++++++..|++..+..
T Consensus 93 y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHCTTCHHHHH
T ss_pred HHHHHHhcCCCCHHHHH
Confidence 99999999999987665
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.52 E-value=0.00074 Score=62.37 Aligned_cols=75 Identities=13% Similarity=0.023 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVF-------PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIM 1040 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 1040 (1278)
.-++.+|..++..+++..|+.+|+.+++.. +..+.++..+|.++.+.|+++.|+..++++++..|++..+...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 344555555566666666666666655532 2334555555555555555555555555555555555554444
Q ss_pred HH
Q psy3224 1041 LA 1042 (1278)
Q Consensus 1041 la 1042 (1278)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.28 E-value=0.0012 Score=77.71 Aligned_cols=97 Identities=10% Similarity=0.002 Sum_probs=69.4
Q ss_pred cCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcHHHHHHHHhccC
Q psy3224 1048 RKMLIKARSVLEKGRLR-----NPNCAE---LWLAAIRVEIRAGLKDIANTMMAKALQEC-----PNAGILWAEAIFLEP 1114 (1278)
Q Consensus 1048 ~g~~~~A~~~l~kal~~-----~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~kal~~~-----P~~~~~~~~~~~~~~ 1114 (1278)
.|++++|+.+|++++.+ .|+++. .+..++.+|..+|++++|+.++++++... |+++.+-.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~------- 383 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVAS------- 383 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH-------
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHH-------
Confidence 45666666666666653 455553 46677778888888888888888876542 33333222
Q ss_pred CCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhcCCH
Q psy3224 1115 RPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKN 1194 (1278)
Q Consensus 1115 ~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~g~~ 1194 (1278)
.+++||.+|+.+|++
T Consensus 384 -----------------------------------------------------------------~l~nLa~~~~~qg~~ 398 (433)
T 3qww_A 384 -----------------------------------------------------------------MWLKLGRLYMGLENK 398 (433)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHTTCH
T ss_pred -----------------------------------------------------------------HHHHHHHHHHhccCH
Confidence 789999999999999
Q ss_pred HHHHHHHHHHHhh-----CCCChhHHH
Q psy3224 1195 QKCREWFNRTVKI-----DPDLGDAWA 1216 (1278)
Q Consensus 1195 ~~A~~~~~kal~~-----~P~~~d~~~ 1216 (1278)
++|..+|++|+++ .|+++.+-.
T Consensus 399 ~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 399 AAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 9999999999984 677776543
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.24 E-value=0.0036 Score=73.75 Aligned_cols=99 Identities=9% Similarity=-0.052 Sum_probs=78.5
Q ss_pred HHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCcHHHHHHHHh
Q psy3224 1045 EERRKMLIKARSVLEKGRLR-----NPNCA---ELWLAAIRVEIRAGLKDIANTMMAKALQEC-----PNAGILWAEAIF 1111 (1278)
Q Consensus 1045 ~~~~g~~~~A~~~l~kal~~-----~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~kal~~~-----P~~~~~~~~~~~ 1111 (1278)
+...|++++|+..+++++.+ .|+++ .++..++.+|...|++++|+.++++++... |+++.+-.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~---- 372 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV---- 372 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH----
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH----
Confidence 44678999999999999874 45666 457788889999999999999999987653 33332221
Q ss_pred ccCCCCChhHHHHHHHHhccCcchhhhhhhhhhhhcccccccccCccccccccchhhhhhhhCCCCHHHHHHHHHHHHhc
Q psy3224 1112 LEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCE 1191 (1278)
Q Consensus 1112 ~~~~~~~~~~A~~~l~k~~~~p~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~a~~~l~~~p~~~~~l~~lg~~~~~~ 1191 (1278)
.+++||.+|+.+
T Consensus 373 --------------------------------------------------------------------~l~nLa~~~~~~ 384 (429)
T 3qwp_A 373 --------------------------------------------------------------------QVMKVGKLQLHQ 384 (429)
T ss_dssp --------------------------------------------------------------------HHHHHHHHHHHT
T ss_pred --------------------------------------------------------------------HHHHHHHHHHhc
Confidence 789999999999
Q ss_pred CCHHHHHHHHHHHHhh-----CCCChhHH
Q psy3224 1192 NKNQKCREWFNRTVKI-----DPDLGDAW 1215 (1278)
Q Consensus 1192 g~~~~A~~~~~kal~~-----~P~~~d~~ 1215 (1278)
|++++|+.+|++|+++ -|+++.+.
T Consensus 385 g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 385 GMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 9999999999999984 67777644
No 223
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.09 E-value=0.0027 Score=74.77 Aligned_cols=84 Identities=14% Similarity=0.174 Sum_probs=45.3
Q ss_pred HcCCHHHHHHHHHHHHHhC-----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCChHHHHHHHH
Q psy3224 946 ENNEYERARRLLAKARASA-----PT----PRVMIQSAKLEWCLDNLERALQLLDEAIKV--------FPDFAKLWMMKG 1008 (1278)
Q Consensus 946 ~~g~~~~A~~~l~~al~~~-----p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~la 1008 (1278)
..|++++|+.+|++++... |+ ...+.+++.+|..+|++++|+.++++++.. .|+-...+.++|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3456666666666666542 21 245555556666666666666666665543 122234445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q psy3224 1009 QIEEQKNLLDKAHDTFSQAIK 1029 (1278)
Q Consensus 1009 ~~~~~~g~~~~A~~~~~~al~ 1029 (1278)
.+|..+|++++|+.+|+++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 555555555555555555553
No 224
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.99 E-value=0.0061 Score=71.81 Aligned_cols=84 Identities=15% Similarity=0.126 Sum_probs=51.8
Q ss_pred HcCCHHHHHHHHHHHHHhC-----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCChHHHHHHHH
Q psy3224 946 ENNEYERARRLLAKARASA-----PT----PRVMIQSAKLEWCLDNLERALQLLDEAIKV--------FPDFAKLWMMKG 1008 (1278)
Q Consensus 946 ~~g~~~~A~~~l~~al~~~-----p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~~~~~la 1008 (1278)
..|++++|+.++++++... |+ ..++.+++.+|..+|++++|+.++++++.. .|+-...+..+|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 5667777777777776542 11 355666666666667777777777666653 122234555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q psy3224 1009 QIEEQKNLLDKAHDTFSQAIK 1029 (1278)
Q Consensus 1009 ~~~~~~g~~~~A~~~~~~al~ 1029 (1278)
.+|..+|++++|+.+|+++++
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 666666666666666666664
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.82 E-value=0.0091 Score=56.16 Aligned_cols=87 Identities=10% Similarity=-0.097 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 985 RALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDK---AHDTFSQAIKKC-P-HSVPLWIMLANLEERRKMLIKARSVLE 1059 (1278)
Q Consensus 985 ~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~l~~~~g~~~~A~~~l~ 1059 (1278)
.+...|.+.+...+.+..+.+.+|+++.+..+... ++.+++..+... | ..-...+.+|..+.+.|+|++|+.+++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33444444444444445555555555555444333 455555544443 2 233444455555555555555555555
Q ss_pred HHHHhCCCCHHH
Q psy3224 1060 KGRLRNPNCAEL 1071 (1278)
Q Consensus 1060 kal~~~p~~~~~ 1071 (1278)
.+++..|++..+
T Consensus 99 ~lL~~eP~n~QA 110 (126)
T 1nzn_A 99 GLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHCTTCHHH
T ss_pred HHHHhCCCCHHH
Confidence 555555555444
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.61 E-value=0.013 Score=55.08 Aligned_cols=93 Identities=14% Similarity=-0.060 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHH
Q psy3224 1015 NLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIK---ARSVLEKGRLRN-P-NCAELWLAAIRVEIRAGLKDIAN 1089 (1278)
Q Consensus 1015 g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~---A~~~l~kal~~~-p-~~~~~~~~l~~~~~~~g~~~~A~ 1089 (1278)
.....++..|.+.+...+.+..+-+.+|+.+.+..+... ++.+++..+... | ..-+..+.++..+++.|+|++|.
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 345667888888888888899999999999998887766 999999998876 5 45578889999999999999999
Q ss_pred HHHHHHHHHCCCcHHHHH
Q psy3224 1090 TMMAKALQECPNAGILWA 1107 (1278)
Q Consensus 1090 ~~~~kal~~~P~~~~~~~ 1107 (1278)
.+++.+|+..|++..+..
T Consensus 95 ~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHH
Confidence 999999999999987665
No 227
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=96.58 E-value=2.3 Score=51.93 Aligned_cols=277 Identities=9% Similarity=0.001 Sum_probs=128.8
Q ss_pred HHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Q psy3224 732 IRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHC- 810 (1278)
Q Consensus 732 ~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~- 810 (1278)
+...+...++.|....+....-..+.+.+++..-+.+|.. .|.+....+.++......|+..+|......+-...
T Consensus 58 v~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~ 133 (618)
T 1qsa_A 58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (618)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Confidence 4445555555554444444555556667777766665553 37888888888888888998877777666654433
Q ss_pred --CchHHHHHh----hcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHH-HHHHHHHHHcCCHHHHHHHH
Q psy3224 811 --PKSEVLWLM----GAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLW-LMGAKSKWLAGDVPAARGIL 883 (1278)
Q Consensus 811 --p~~~~~~~~----~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~-~~la~~~~~~g~~~~A~~~l 883 (1278)
|......+. ...-....+|-+. .+....|+...|..+.. .-|.....+ ..+..++ .+...+....
T Consensus 134 ~~p~~c~~l~~~~~~~g~lt~~~~~~R~-~~al~~~~~~~a~~l~~----~l~~~~~~~a~~~~al~---~~p~~~~~~~ 205 (618)
T 1qsa_A 134 SQPNACDKLFSVWRASGKQDPLAYLERI-RLAMKAGNTGLVTVLAG----QMPADYQTIASAIISLA---NNPNTVLTFA 205 (618)
T ss_dssp CCCTHHHHHHHHHHHTTCSCHHHHHHHH-HHHHHTTCHHHHHHHHH----TCCGGGHHHHHHHHHHH---HCGGGHHHHH
T ss_pred CCcHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHH----hCCHHHHHHHHHHHHHH---hChHhHHHHH
Confidence 333222211 1112223344443 33344555554544332 222221111 1111111 1111111111
Q ss_pred HHHHHhCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHH-HH---HHHHHHHHcCCHHHHHHHHH
Q psy3224 884 SLAFQANPNSE-EIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEI-WL---AAVKLESENNEYERARRLLA 958 (1278)
Q Consensus 884 ~~al~~~p~~~-~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~-~~---~la~~~~~~g~~~~A~~~l~ 958 (1278)
.. ..+... .-...++.......+.+.|...+.... ...+-+... +. .++.-....+...++...+.
T Consensus 206 ~~---~~~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~------~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~ 276 (618)
T 1qsa_A 206 RT---TGATDFTRQMAAVAFASVARQDAENARLMIPSLA------QAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRD 276 (618)
T ss_dssp HH---SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH------HHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHH
T ss_pred hc---cCCChhhHHHHHHHHHHHHhcCHHHHHHHHHhhh------hccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 00 111111 011112222222335566666665543 111112211 11 12222222232445555555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 959 KARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK 1029 (1278)
Q Consensus 959 ~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 1029 (1278)
+......+..+.-..+......|++..|..+|.++-......+...+.+|..+...|+.++|..+|.++..
T Consensus 277 ~~~~~~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 277 DAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hccccCCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 55544444433333334444557777777766655443333456666667777777777777777766653
No 228
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.38 E-value=0.48 Score=54.25 Aligned_cols=57 Identities=16% Similarity=0.022 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC---C---HHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q psy3224 865 MGAKSKWLAGDVPAARGILSLAFQANPN---S---EEIWLAAVKLESENNEYERARRLLAKAR 921 (1278)
Q Consensus 865 ~la~~~~~~g~~~~A~~~l~~al~~~p~---~---~~~~~~la~l~~~~g~~~~A~~~l~~al 921 (1278)
.+|.+|...|++.+|...+.+.++.+.. . .+++..-++++...+++.++...+.++.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5566666666666666666665554322 1 2233333444444444444444444443
No 229
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.35 E-value=0.017 Score=56.81 Aligned_cols=130 Identities=14% Similarity=0.100 Sum_probs=67.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC---CCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHH
Q psy3224 830 LRAAYFEKNHGTRESLETLLQKAVAHC---PKS------EVLWLMGAKSKWLAGDVPAARGILSLAFQAN---PNSEEIW 897 (1278)
Q Consensus 830 l~~a~l~~~~g~~~~A~~~~~~al~~~---P~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~---p~~~~~~ 897 (1278)
+..+......+.|+.|+-+...++... |+. ..+...+|..++..++|.+|...|+++++.. +.+....
T Consensus 24 ~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 24 IDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 344445556666776666666655432 221 1355666666666777777777777665533 2222111
Q ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q psy3224 898 LAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLE 977 (1278)
Q Consensus 898 ~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~ 977 (1278)
..++ ... .... -...+.+.++.+.++.|+...+++++|+..++.+-...-++.+.+.+|.+|
T Consensus 104 ~~~~-~~s---s~p~--------------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 104 PSTG-NSA---STPQ--------------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp -------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred cccc-ccC---CCcc--------------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 0010 000 0000 011234556777777777777777777777766554555566666666654
No 230
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.05 E-value=0.93 Score=51.92 Aligned_cols=99 Identities=21% Similarity=0.149 Sum_probs=55.9
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC----HHHH
Q psy3224 899 AAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASA----PT----PRVM 970 (1278)
Q Consensus 899 ~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~----p~----~~~~ 970 (1278)
.++.++...|++.+|..++.+++..+..+.....-.+++..-..+|...+++.++...|.++.... +. ..+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 556666666666666666666654443222223346666666666666666666666666665431 22 2344
Q ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHhC
Q psy3224 971 IQSAKLEW-CLDNLERALQLLDEAIKVF 997 (1278)
Q Consensus 971 ~~la~~~~-~~g~~~~A~~~l~~al~~~ 997 (1278)
...|.++. ..++|..|...|-+++..+
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 44455555 5666666666666665433
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.40 E-value=0.063 Score=52.76 Aligned_cols=133 Identities=11% Similarity=-0.007 Sum_probs=84.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---chHH
Q psy3224 748 TWMEDAESCANQGAYECARAIYAQALATFPSKK---------SIWLRAAYFEKNHGTRESLETLLQKAVAHCP---KSEV 815 (1278)
Q Consensus 748 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~---------~~~~~la~~~~~~g~~~~A~~~l~~al~~~p---~~~~ 815 (1278)
+++...+.++..|.|+.|+-+...++....++. .+...+|..+...+++..|...|+++++... ....
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 556667778888888888888887665432222 3677889999999999999999999875532 1110
Q ss_pred HHHhhcccchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy3224 816 LWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEE 895 (1278)
Q Consensus 816 ~~~~~~~~~~~~~~l~~a~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 895 (1278)
.. . ..+ .......-. ..+...++.+.++.||...+++.+|+.+++..-... .++.
T Consensus 102 ~~----------~---------~~~----~~ss~p~s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~-Rt~k 156 (167)
T 3ffl_A 102 VR----------P---------STG----NSASTPQSQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ-RTPK 156 (167)
T ss_dssp ---------------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG-CCHH
T ss_pred cc----------c---------ccc----ccCCCcccc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh-cCHH
Confidence 00 0 000 000000001 123456788999999999999999999887643222 2578
Q ss_pred HHHHHHHHHH
Q psy3224 896 IWLAAVKLES 905 (1278)
Q Consensus 896 ~~~~la~l~~ 905 (1278)
+-+.+|++|.
T Consensus 157 vnm~LakLy~ 166 (167)
T 3ffl_A 157 INMLLANLYK 166 (167)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHhc
Confidence 8888888763
No 232
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=95.15 E-value=8.4 Score=46.94 Aligned_cols=119 Identities=10% Similarity=-0.005 Sum_probs=79.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCh-HHHHHH---HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy3224 978 WCLDNLERALQLLDEAIKVFPDF-AKLWMM---KGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIK 1053 (1278)
Q Consensus 978 ~~~g~~~~A~~~l~~al~~~p~~-~~~~~~---la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~ 1053 (1278)
....+.+.|...+.......+-+ ...+.. ++.-+...+...++...+.+...... +..+...++....+.|++..
T Consensus 225 lar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 225 VARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ-STSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC-ChHHHHHHHHHHHHCCCHHH
Confidence 34458889999998776543322 222222 22222333435567777777665444 44445555566667899999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1054 ARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQ 1097 (1278)
Q Consensus 1054 A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~ 1097 (1278)
|..+|.++-......+...+.+++.+...|+.++|..+|.++..
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999876554445566778888898999999999999999875
No 233
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.93 E-value=1.5 Score=55.78 Aligned_cols=75 Identities=17% Similarity=0.083 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHH
Q psy3224 864 LMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKL 943 (1278)
Q Consensus 864 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~ 943 (1278)
...+..+...|.++.|+...+ ++..- ..+....|+++.|.++.+ ..++...|..+|..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~-----------~~~~~~~W~~la~~ 690 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLT-----------DESAEMKWRALGDA 690 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHT-----------TCCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHH-----------hhCcHhHHHHHHHH
Confidence 455556666777776665442 12111 223345566666665532 23455666666666
Q ss_pred HHHcCCHHHHHHHHHHH
Q psy3224 944 ESENNEYERARRLLAKA 960 (1278)
Q Consensus 944 ~~~~g~~~~A~~~l~~a 960 (1278)
+...++++.|..+|.++
T Consensus 691 al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 691 SLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHc
Confidence 66666666666666543
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.86 E-value=0.43 Score=45.55 Aligned_cols=75 Identities=7% Similarity=-0.160 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy3224 965 PTPRVMIQSAKLEWCLDN---LERALQLLDEAIKVFP-DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039 (1278)
Q Consensus 965 p~~~~~~~la~~~~~~g~---~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 1039 (1278)
+++...+.+|.++....+ ..+++.+++..+...| ..-+.++.+|..+.+.|+|++|+.+.+.+|+..|++..+..
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 455666666666555443 3356666666666655 33455566666666666666666666666666666654443
No 235
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.85 E-value=3.6 Score=45.54 Aligned_cols=27 Identities=19% Similarity=0.020 Sum_probs=21.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 858 KSEVLWLMGAKSKWLAGDVPAARGILS 884 (1278)
Q Consensus 858 ~~~~~~~~la~~~~~~g~~~~A~~~l~ 884 (1278)
.++.++..+|..|+..+++.+|...|-
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i 160 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV 160 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 567888888888888888888877763
No 236
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.69 E-value=0.96 Score=57.76 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=58.4
Q ss_pred HHHHcCCHHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHH
Q psy3224 755 SCANQGAYECARA-IYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAA 833 (1278)
Q Consensus 755 ~~~~~g~~~~A~~-~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a 833 (1278)
.....++++.|.. ++.. -| +......++.++...|.++.|....+. .. ...
T Consensus 608 ~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~----------------~~f 659 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISPD-------QD----------------QKF 659 (814)
T ss_dssp HHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH----------------HHH
T ss_pred HHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCCC-------cc----------------hhe
Confidence 3345677777655 3310 11 012225556667777777776554421 10 001
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 834 YFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLA 886 (1278)
Q Consensus 834 ~l~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~a 886 (1278)
.+....|+++.|.++.+ ..+++..|..+|..+...++++.|..+|.++
T Consensus 660 ~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 22345677777776643 2356778888888888888888888888875
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.63 E-value=0.23 Score=61.76 Aligned_cols=65 Identities=5% Similarity=-0.066 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhC---------CHHHHHHHHHHHHH
Q psy3224 1175 EHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIING---------TEETQAEVKKRCLA 1240 (1278)
Q Consensus 1175 p~~~~~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G---------~~~~A~~~l~ka~~ 1240 (1278)
.....-|-.||.+.++.+++++|++.|+.++.. -=++.+|..+.++|...+ +.+....++-|.+.
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~-RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~ 683 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA-RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKIS 683 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHH
Confidence 334667999999999999999999999999974 245779999999998877 66666555555543
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.48 E-value=0.33 Score=45.73 Aligned_cols=75 Identities=7% Similarity=-0.160 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy3224 965 PTPRVMIQSAKLEWCLDN---LERALQLLDEAIKVFP-DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039 (1278)
Q Consensus 965 p~~~~~~~la~~~~~~g~---~~~A~~~l~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 1039 (1278)
|++..-+.+|..+....+ ..+++.+++..++..| ..-+.++.+|..+.+.|+|++|+.+.+.+++..|++..+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 445555555555555443 2345566666665555 23455555666666666666666666666666666554443
No 239
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.25 E-value=1 Score=42.96 Aligned_cols=73 Identities=5% Similarity=-0.150 Sum_probs=52.1
Q ss_pred ChHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 999 DFAKLWMMKGQIEEQKNLL---DKAHDTFSQAIKKCPH-SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 999 ~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
-+....+.+++++.+..+. .+++.+++..+...|. .-+.++.+|..+.+.|+|++|+.+.+.+++..|+|..+
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 4467777777777776643 4677777777777774 45566677777777777888887777777777777665
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.15 E-value=0.34 Score=45.67 Aligned_cols=72 Identities=6% Similarity=-0.151 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy3224 1000 FAKLWMMKGQIEEQKNLL---DKAHDTFSQAIKKCPH-SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071 (1278)
Q Consensus 1000 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~ 1071 (1278)
++...+.+|+++.+..+. .+++.+++..++..|. ..+.++.+|..+.+.|+|++|+.+.+.+++..|++..+
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 467778888887776644 4677888888877773 46677777888888888888888888888888888766
No 241
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.86 E-value=0.94 Score=48.25 Aligned_cols=120 Identities=10% Similarity=0.005 Sum_probs=84.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHH
Q psy3224 754 ESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAA 833 (1278)
Q Consensus 754 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a 833 (1278)
..+.+.|+++.|+......++.+|.|......+.++++-.|+++.|..-++.+.+++|.....- ..+...+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a---------~~yr~lI 75 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA---------SQLRHLV 75 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH---------HHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH---------HHHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999986421 0111111
Q ss_pred HHHHhcCCHHHHHHHHHHHHH--hC---CCcHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 834 YFEKNHGTRESLETLLQKAVA--HC---PKSEVLW---LMGAKSKWLAGDVPAARGILSLAFQANPN 892 (1278)
Q Consensus 834 ~l~~~~g~~~~A~~~~~~al~--~~---P~~~~~~---~~la~~~~~~g~~~~A~~~l~~al~~~p~ 892 (1278)
. |...=.+.+. .. +..+..| +.-+......|+.++|..+-.++++.-|.
T Consensus 76 ~----------aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 76 K----------AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp H----------HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred H----------HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 1 1111111111 11 1222223 34445556689999999999999888765
No 242
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.12 E-value=0.58 Score=58.19 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Q psy3224 862 LWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAK 919 (1278)
Q Consensus 862 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~ 919 (1278)
+...-+.++...|+++-|+.+.++++...|..-..|..|+.+|..+|+++.|+-.+..
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 4445566667777788888888888887787777788888888888888877766654
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.78 E-value=12 Score=43.83 Aligned_cols=96 Identities=11% Similarity=0.093 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHH--
Q psy3224 1002 KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS------VPLWIMLANLEERRKMLIKARSVLEKGRL---RNPNCAE-- 1070 (1278)
Q Consensus 1002 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~l~~~~g~~~~A~~~l~kal~---~~p~~~~-- 1070 (1278)
.+...++.++...|++.+|..++.......-.. .+++..-.+++...+++.+|...+.++.. ..+..+.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 344455555555666666655555554321111 33444555566666666666666665432 1223332
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1071 --LWLAAIRVEIRAGLKDIANTMMAKALQ 1097 (1278)
Q Consensus 1071 --~~~~l~~~~~~~g~~~~A~~~~~kal~ 1097 (1278)
++...+.++...++|.+|-..|..++.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 233444555566666666666666554
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.59 E-value=29 Score=43.98 Aligned_cols=46 Identities=7% Similarity=0.068 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy3224 748 TWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGT 795 (1278)
Q Consensus 748 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 795 (1278)
-|....++....++.+.+.++|.+.+. ..+..+-+.++-.+.+.+.
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~--~~d~l~ayQiAFdL~~~~~ 277 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE--ENDEGLSAQIAFDLVSSAS 277 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh--cccHHHHHHHHHHHhcccc
Confidence 577788889999999999999999874 4566666667666665443
No 245
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.12 E-value=15 Score=40.27 Aligned_cols=27 Identities=11% Similarity=-0.168 Sum_probs=24.0
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 858 KSEVLWLMGAKSKWLAGDVPAARGILS 884 (1278)
Q Consensus 858 ~~~~~~~~la~~~~~~g~~~~A~~~l~ 884 (1278)
.++.++..+|..++..+++.+|+..|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 578999999999999999999988876
No 246
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.07 E-value=1.1 Score=56.91 Aligned_cols=101 Identities=12% Similarity=0.072 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHH
Q psy3224 860 EVLWLMGAKSKWLAGDVPAARGILSLAFQ----ANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEE 935 (1278)
Q Consensus 860 ~~~~~~la~~~~~~g~~~~A~~~l~~al~----~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~ 935 (1278)
...+..+...|.+.|++++|..+|....+ -..-+...|..+...+.+.|++++|..+|+++.. .....+..
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~-----~G~~PDvv 201 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD-----AGLTPDLL 201 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-----TTCCCCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCcHH
Confidence 45688888999999999999999987653 3567899999999999999999999999999873 44566888
Q ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHhCC
Q psy3224 936 IWLAAVKLESENNE-YERARRLLAKARASAP 965 (1278)
Q Consensus 936 ~~~~la~~~~~~g~-~~~A~~~l~~al~~~p 965 (1278)
.|..+...+.+.|+ .++|..+|+++....-
T Consensus 202 TYntLI~glcK~G~~~e~A~~Ll~EM~~kG~ 232 (1134)
T 3spa_A 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGL 232 (1134)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 99999999999987 5789999999998753
No 247
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.95 E-value=2.3 Score=42.40 Aligned_cols=99 Identities=14% Similarity=0.032 Sum_probs=58.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy3224 978 WCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSV 1057 (1278)
Q Consensus 978 ~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~ 1057 (1278)
...|+++.|.++.+.. ++...|..+|......|+++-|..+|.++ .+ +-.+.-+|...|+.++-...
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~-----~D---~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQ-----HS---FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHT-----TC---HHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHh-----CC---HHHHHHHHHHhCCHHHHHHH
Confidence 3567777777665544 55677777777777777777777777665 12 22333444556666555555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 1058 LEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAK 1094 (1278)
Q Consensus 1058 l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~k 1094 (1278)
-+.+...... .....++...|++++++++|.+
T Consensus 83 a~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 83 QNIAQTREDF-----GSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHCccH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence 4444433321 2222345557777777777644
No 248
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.79 E-value=10 Score=36.93 Aligned_cols=106 Identities=13% Similarity=0.051 Sum_probs=75.1
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-----------h
Q psy3224 856 CPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQ-----------A 924 (1278)
Q Consensus 856 ~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~-----------~ 924 (1278)
.|..++..+.++..+.-.|.+.+|+-++.. -+.....+.-+.++...+++..|+..++..+.. .
T Consensus 29 ~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~ 103 (242)
T 3kae_A 29 LPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARI 103 (242)
T ss_dssp C----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHH
T ss_pred ccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 344445566777777788888888766543 234566666677788888999998888887721 1
Q ss_pred hhhhcCCCcHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy3224 925 GAFQANPNSEEIWL-AAVKLESENNEYERARRLLAKARASAPT 966 (1278)
Q Consensus 925 ~~l~~~p~~~~~~~-~la~~~~~~g~~~~A~~~l~~al~~~p~ 966 (1278)
+..-.+|.+.+.+. .+|.++.+.|+.++|+..|.......|-
T Consensus 104 ~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 104 QEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred ceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 12345677776665 6788999999999999999999888775
No 249
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=91.51 E-value=1.4 Score=55.77 Aligned_cols=102 Identities=12% Similarity=0.027 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCHHHHH
Q psy3224 894 EEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAS--APTPRVMI 971 (1278)
Q Consensus 894 ~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~~~ 971 (1278)
...+..+...+.+.|+.++|..+|..+..... .....+...|..++..+++.|++++|..+|+++... .|+...|.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~--kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ--KRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHH--HHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh--cCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 45688899999999999999999998863321 235668889999999999999999999999999876 47888888
Q ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHhC
Q psy3224 972 QSAKLEWCLDN-LERALQLLDEAIKVF 997 (1278)
Q Consensus 972 ~la~~~~~~g~-~~~A~~~l~~al~~~ 997 (1278)
.+...+.+.|+ .+.|..+|+++....
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 88888888887 478889999888753
No 250
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=91.49 E-value=3.1 Score=41.56 Aligned_cols=99 Identities=11% Similarity=0.101 Sum_probs=52.6
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHhhcccchHHHHHHHHHHH
Q psy3224 757 ANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFE 836 (1278)
Q Consensus 757 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~~~~~~~~~~~l~~a~l~ 836 (1278)
...|+++.|.++.+.. ++...|..++......|+++-|..+|.++-. +-....++
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------------------~~~L~~Ly 70 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------------------FDKLSFLY 70 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------------------HHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------------------HHHHHHHH
Confidence 4556666666665543 4556666666666666666666666665321 12222333
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 837 KNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSL 885 (1278)
Q Consensus 837 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~ 885 (1278)
...|+.+....+.+.+....- +.....+++..|++++++++|.+
T Consensus 71 ~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 444555444444443333221 22333455667777777777754
No 251
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.96 E-value=14 Score=43.14 Aligned_cols=98 Identities=12% Similarity=0.075 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCH--
Q psy3224 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFP----D--FAKLWMMKGQIEEQKNLLDKAHDTFSQAIK---KCPHSV-- 1035 (1278)
Q Consensus 967 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p----~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~-- 1035 (1278)
..+...++.++...|++.+|..++.......- . -.+++....+++...+++.+|...+.++.. ..+.++
T Consensus 137 arl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l 216 (445)
T 4b4t_P 137 ARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL 216 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH
Confidence 35666778888888888888888877654211 1 146677777788888888888888887642 233333
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 1036 --PLWIMLANLEERRKMLIKARSVLEKGRLR 1064 (1278)
Q Consensus 1036 --~~~~~la~l~~~~g~~~~A~~~l~kal~~ 1064 (1278)
..+...|.++...++|.+|-..|..++..
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 34445677888888888888888777654
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.54 E-value=3.1 Score=44.29 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=53.9
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy3224 837 KNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEE 895 (1278)
Q Consensus 837 ~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 895 (1278)
...|+.++++..+...++.+|.+......+.++++-.|++++|..-++.+.+++|....
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~ 66 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 66 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence 45688999999999999999999999999999999999999999999999999998543
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.42 E-value=4.7 Score=46.35 Aligned_cols=107 Identities=9% Similarity=0.033 Sum_probs=76.1
Q ss_pred HHcCCHHHHHHHHHHHHHhhhhCCcccc-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHc
Q psy3224 681 EAHGNNAMVDKIIDRALSSLSANGVEIN-REHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQ 759 (1278)
Q Consensus 681 ~~~g~~~~A~~il~~al~~~~~~~~~~~-~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~ 759 (1278)
...|+...|...+.+++..+...-.... ...|...... -++.. ...+...++..+...
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~------------~l~~~---------~~~a~~~~~~~~l~~ 184 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFAT------------ALVED---------KVLAHTAKAEAEIAC 184 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHH------------HHHHH---------HHHHHHHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHH------------HHHHH---------HHHHHHHHHHHHHHC
Confidence 3457778888888888876543321111 1234322111 11111 123556678888999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 760 GAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVA 808 (1278)
Q Consensus 760 g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 808 (1278)
|++.+|+..+..++..+|-+..+|..+..++...|+..+|+..|+++..
T Consensus 185 g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 185 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987543
No 254
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=88.28 E-value=20 Score=34.94 Aligned_cols=99 Identities=10% Similarity=-0.046 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------h
Q psy3224 1002 KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRL-----------------R 1064 (1278)
Q Consensus 1002 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~-----------------~ 1064 (1278)
+..+.++.++.-.|.+..|.-++.. -+.....+.-+.++...+++.+|+..+++.+. .
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 4444455555555666655543321 12233444445555666666666666666652 2
Q ss_pred CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHH
Q psy3224 1065 NPNCAE-LWLAAIRVEIRAGLKDIANTMMAKALQECPNAGIL 1105 (1278)
Q Consensus 1065 ~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~ 1105 (1278)
+|.+.+ .+..++.++.+.|+.++|+..+.......|--+.+
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPV 150 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchH
Confidence 344444 35666778888999999999999888888765433
No 255
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=87.79 E-value=4.2 Score=41.29 Aligned_cols=63 Identities=10% Similarity=0.164 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHh--cC-HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 637 PTSVELWLALARL--ET-YENARKVLNKARENI--PTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSS 699 (1278)
Q Consensus 637 P~~~~~w~~la~l--~~-~~~A~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~ 699 (1278)
|....+|+.|+++ .+ ..++..+|..+.... -.....|..+|..++..|++.+|..+|+..++.
T Consensus 77 ~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 77 PRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3345678888876 44 678888887776643 345778888999999999999999999998875
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=87.63 E-value=5.4 Score=45.82 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1003 LWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRL 1063 (1278)
Q Consensus 1003 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~ 1063 (1278)
+...++..+...|++.+|+..+..++..+|-+-.+|..+..++...|+..+|+..|+++..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445666677778888888888888888888777888888888888888888887777654
No 257
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.58 E-value=12 Score=43.88 Aligned_cols=124 Identities=16% Similarity=0.162 Sum_probs=50.5
Q ss_pred HHHhcCCHHHHHHHHHHHHH-----------hCCCcHHHHHHHHHHHHHcCCHHHH----------HHHHHHHHHhC---
Q psy3224 835 FEKNHGTRESLETLLQKAVA-----------HCPKSEVLWLMGAKSKWLAGDVPAA----------RGILSLAFQAN--- 890 (1278)
Q Consensus 835 l~~~~g~~~~A~~~~~~al~-----------~~P~~~~~~~~la~~~~~~g~~~~A----------~~~l~~al~~~--- 890 (1278)
++...+++++|..+-..++. .++-...+|+.++.++...|+.... +..+-.+++..
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 44456777777776655441 1333456788777777777765542 33333333322
Q ss_pred --CC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 891 --PN-SEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNS-------EEIWLAAVKLESENNEYERARRLLAKA 960 (1278)
Q Consensus 891 --p~-~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~l~~a 960 (1278)
+. ...++..+.+.|...+.++.|..+..++. .|.+ ...++.+|+++...++|.+|...+..|
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--------fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--------YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--------SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--------CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 21 25567778888888888888888888753 4432 223445677777888888888888888
Q ss_pred HHhCCC
Q psy3224 961 RASAPT 966 (1278)
Q Consensus 961 l~~~p~ 966 (1278)
+..+|.
T Consensus 297 ~rkap~ 302 (523)
T 4b4t_S 297 IRKAPH 302 (523)
T ss_dssp TSSCSC
T ss_pred HHhCCc
Confidence 777663
No 258
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.27 E-value=3.7 Score=48.20 Aligned_cols=103 Identities=14% Similarity=0.166 Sum_probs=59.9
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHH----------HHHHHHHHHHh-----CCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy3224 930 NPNSEEIWLAAVKLESENNEYER----------ARRLLAKARAS-----APT--PRVMIQSAKLEWCLDNLERALQLLDE 992 (1278)
Q Consensus 930 ~p~~~~~~~~la~~~~~~g~~~~----------A~~~l~~al~~-----~p~--~~~~~~la~~~~~~g~~~~A~~~l~~ 992 (1278)
++-...+|+.+..++...|+... .+..+-.++.. ++. ..++..+.+.|...+.+++|..+..+
T Consensus 177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk 256 (523)
T 4b4t_S 177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISK 256 (523)
T ss_dssp --------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhc
Confidence 33344556666666655555443 23333333332 222 57888888899999999999999998
Q ss_pred HHHhCCCh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy3224 993 AIKVFPDF-------AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS 1034 (1278)
Q Consensus 993 al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 1034 (1278)
+. +|.+ ...++.+|.++.-.++|.+|...+..|+..+|.+
T Consensus 257 ~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 257 LE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred Cc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 84 5532 4566778999999999999999999999998864
No 259
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.63 E-value=4.6 Score=53.66 Aligned_cols=52 Identities=13% Similarity=0.050 Sum_probs=36.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 972 QSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQA 1027 (1278)
Q Consensus 972 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 1027 (1278)
.+...+...+.++-+.. .+...|.++..-+.+|.++...|++++|..+|+++
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34445556666665544 34556777777788888888888888888888776
No 260
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=85.54 E-value=8.1 Score=51.27 Aligned_cols=136 Identities=10% Similarity=-0.071 Sum_probs=74.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHHHHHHHHHH
Q psy3224 866 GAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLES 945 (1278)
Q Consensus 866 la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~~~la~~~~ 945 (1278)
+...+...+.++-|++ .+..+|.++..-+.+|.++...|++++|..+|+++.... ...+.
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~-----~~~~~----------- 877 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVL-----YSHTS----------- 877 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSC-----TTCCC-----------
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhh-----cccch-----------
Confidence 3444556666665554 334567776667778888888888888888887763110 00000
Q ss_pred HcCCHHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChH----HHHHHHHHHHHHcCC
Q psy3224 946 ENNEYERARRLLAKARASAP----TPRVMIQSAKLEWCLDNLERALQLLDEAIKVFP-DFA----KLWMMKGQIEEQKNL 1016 (1278)
Q Consensus 946 ~~g~~~~A~~~l~~al~~~p----~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p-~~~----~~~~~la~~~~~~g~ 1016 (1278)
....... +.......+ .+..|+..+.++...+.++.++++...|++..+ ++. .+|..+-..+...|+
T Consensus 878 l~~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ 953 (1139)
T 4fhn_B 878 QFAVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK 953 (1139)
T ss_dssp SCSSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC
Confidence 0000000 111111111 134555556666666777777777777766543 222 256666666677777
Q ss_pred HHHHHHHHH
Q psy3224 1017 LDKAHDTFS 1025 (1278)
Q Consensus 1017 ~~~A~~~~~ 1025 (1278)
|++|-..+.
T Consensus 954 ye~Ay~aL~ 962 (1139)
T 4fhn_B 954 FDAAHVALM 962 (1139)
T ss_dssp SGGGGHHHH
T ss_pred HHHHHHHHH
Confidence 777766553
No 261
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.42 E-value=5.4 Score=46.49 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHH--
Q psy3224 861 VLWLMGAKSKWLAGDVPAARGILSLAFQANPN---SEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEE-- 935 (1278)
Q Consensus 861 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~-- 935 (1278)
.++..+|..|...|+++.|.++|.++...+.. -.++++...+++...+++..+...+.++..... ...++.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~----~~~d~~~~ 207 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIE----KGGDWERR 207 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT----TCCCTHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhh----cCCCHHHH
Confidence 46788999999999999999999998887644 267788888888888888888888888764321 111111
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 936 --IWLAAVKLESENNEYERARRLLAKARAS 963 (1278)
Q Consensus 936 --~~~~la~~~~~~g~~~~A~~~l~~al~~ 963 (1278)
+....|.++...++|..|...|-.++..
T Consensus 208 ~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 208 NRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1223344444556666666666555544
No 262
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=82.16 E-value=39 Score=34.24 Aligned_cols=123 Identities=9% Similarity=0.042 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHh---CCCCH-HHHHHHHHHHHHc---CCH---HHHH-HHHHHHHHhhhhCCc-ccc---HHHHHHHHH
Q psy3224 653 ENARKVLNKAREN---IPTDR-QIWTTAAKLEEAH---GNN---AMVD-KIIDRALSSLSANGV-EIN---REHWFKEAI 717 (1278)
Q Consensus 653 ~~A~~~l~~al~~---~p~~~-~~~~~la~~~~~~---g~~---~~A~-~il~~al~~~~~~~~-~~~---~~~~l~~A~ 717 (1278)
...+..|+..+.. ..+|| +.|..+..-.+.. |.. .... .++++++..+.+... ..+ ...|+.+|.
T Consensus 9 ~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~ 88 (202)
T 3esl_A 9 NQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYIN 88 (202)
T ss_dssp HHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHH
Confidence 3444555555554 23333 4565555433322 222 1233 567777765544321 111 346777666
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 718 EAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFP 777 (1278)
Q Consensus 718 ~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 777 (1278)
.+ ..+....+..+|..+...++.... ...|..+|..+...|++.+|..+|+.+++...
T Consensus 89 ~~-~~~~~~~p~~if~~L~~~~IG~~~-AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 89 LF-LSNNFHESENTFKYMFNKGIGTKL-SLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HH-STTCHHHHHHHHHHHHHHTSSTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hh-cccccCCHHHHHHHHHHCCCcHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 65 223345677777777776555332 56777777777777777777777777777653
No 263
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=82.13 E-value=1.2e+02 Score=38.50 Aligned_cols=56 Identities=9% Similarity=-0.041 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHH--hCCH-HHHHHHHHHHH
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEII--NGTE-ETQAEVKKRCL 1239 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~--~G~~-~~A~~~l~ka~ 1239 (1278)
+...||.+. .|+.+.+...+..... -.++.+....+..+-. .|+. .++.+.+.++.
T Consensus 598 AViaLGlI~--~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 598 AVIALGFVL--LRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHT--SSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhhc--cCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 445555544 3444444444443332 2234444433333322 3333 56777777775
No 264
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=81.93 E-value=5 Score=47.43 Aligned_cols=79 Identities=8% Similarity=-0.007 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 969 VMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047 (1278)
Q Consensus 969 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~ 1047 (1278)
.+..+|.+.+....+..|..+|.+|+...|+++..+..+|.+....|+.-.|.-+|-+++......+.+..++..++..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4566777777777788888888888888888888888888888888888888888888876655567777777666553
No 265
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=80.62 E-value=6.6 Score=46.42 Aligned_cols=80 Identities=11% Similarity=0.032 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 1002 KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIR 1081 (1278)
Q Consensus 1002 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~ 1081 (1278)
..+..+|++......+..|..+|.+|+...|.++..+..+|.+....|+.-+|.-+|-+++......+.++.++..++..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 46778888888888999999999999999999999999999999999999999999999998776677777777665543
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.93 E-value=6.3 Score=45.92 Aligned_cols=96 Identities=13% Similarity=0.138 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--Ch----HHHHH
Q psy3224 936 IWLAAVKLESENNEYERARRLLAKARASAPT----PRVMIQSAKLEWCLDNLERALQLLDEAIKVFP--DF----AKLWM 1005 (1278)
Q Consensus 936 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~----~~~~~ 1005 (1278)
++..+|.++...|+++.|.++|.++...+.+ ..+++....++...+++..+...+.++..... .+ ..+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3444455555555555555555555444322 24555555555555555555555555543211 11 12333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy3224 1006 MKGQIEEQKNLLDKAHDTFSQAIKKC 1031 (1278)
Q Consensus 1006 ~la~~~~~~g~~~~A~~~~~~al~~~ 1031 (1278)
..|.++...++|..|...|-.++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 34445555666666666666655443
No 267
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=74.97 E-value=0.00018 Score=82.02 Aligned_cols=237 Identities=14% Similarity=0.077 Sum_probs=144.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhhhhcCCCcHHHH
Q psy3224 858 KSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIW 937 (1278)
Q Consensus 858 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~~al~~~~~l~~~p~~~~~~ 937 (1278)
+.+.+|..+|..+...+.+.+|++.|-++ +++..+........+.|.++.-+.++..++ ..-..+.+=
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaR-------k~~ke~~ID 119 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMAR-------KKARESYVE 119 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS-------TTCCSTTTT
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHH-------HHhcccccH
Confidence 44567888888888888888888777654 234445556666677788887777777764 223333333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCH
Q psy3224 938 LAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLL 1017 (1278)
Q Consensus 938 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~ 1017 (1278)
..++.+|.+.++..+-.+++ ..|+..-....|.-++..|.|+.|.-+|... + -|..++.++...|++
T Consensus 120 teLi~ayAk~~rL~elEefl-----~~~N~A~iq~VGDrcf~e~lYeAAKilys~i----s----N~akLAstLV~L~~y 186 (624)
T 3lvg_A 120 TELIFALAKTNRLAELEEFI-----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----S----NFGRLASTLVHLGEY 186 (624)
T ss_dssp HHHHHHHHTSCSSSTTTSTT-----SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS----C----CCTTTSSSSSSCSGG
T ss_pred HHHHHHHHhhCcHHHHHHHH-----cCCCcccHHHHHHHHHHccCHHHHHHHHHhC----c----cHHHHHHHHHHHHHH
Confidence 44555555666543322221 1233333344566666777777766665322 2 244566667777888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy3224 1018 DKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQ 1097 (1278)
Q Consensus 1018 ~~A~~~~~~al~~~p~~~~~~~~la~l~~~~g~~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~kal~ 1097 (1278)
..|.+.-++| +++.+|..........+.+.-|.-+--..+- .|+. +-.+...|...|-+++-+.+++.++.
T Consensus 187 q~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIv-hade---L~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 187 QAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-HADE---LEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp GSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-CSSC---CSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcc-cHHH---HHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 8777754443 4567788777777777777766555444333 2222 23345566777888888888888887
Q ss_pred HCCCcHHHHHHHHhccCCCCChhHHHHHHHHh
Q psy3224 1098 ECPNAGILWAEAIFLEPRPQRKTKSVDALKKC 1129 (1278)
Q Consensus 1098 ~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~ 1129 (1278)
..--+.-++..++.+|.+- +.++-.+.++..
T Consensus 258 lErAHmGmFTELaILYsKY-~PeKlmEHlklf 288 (624)
T 3lvg_A 258 LERAHMGMFTELAILYSKF-KPQKMREHLELF 288 (624)
T ss_dssp STTCCHHHHHHHHHHHHSS-CTTHHHHHHTTS
T ss_pred CCchhHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 7777777777777776543 334444444443
No 268
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.20 E-value=14 Score=35.65 Aligned_cols=59 Identities=12% Similarity=0.180 Sum_probs=42.8
Q ss_pred CHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy3224 639 SVELWLALARLETYENARKVLNKAREN--IPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSS 699 (1278)
Q Consensus 639 ~~~~w~~la~l~~~~~A~~~l~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~il~~al~~ 699 (1278)
-..+|+.++++- +++..+|..+... --.....|...|..++..|++.+|..+|+..++.
T Consensus 70 yLklWl~ya~~~--~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 70 FISYCLKFAEYN--SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp HHHHHHHHHTTB--SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc--CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 345788888763 2366666665543 2335678888899999999999999999988875
No 269
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=71.82 E-value=29 Score=35.74 Aligned_cols=72 Identities=11% Similarity=0.179 Sum_probs=51.7
Q ss_pred HHHHHHHHHhC---------CCCHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy3224 626 RILLSRAVECC---------PTSVELWLALARLETYENARKVLNKARENI--PTDRQIWTTAAKLEEAHGNNAMVDKIID 694 (1278)
Q Consensus 626 ~~~l~kal~~~---------P~~~~~w~~la~l~~~~~A~~~l~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~il~ 694 (1278)
..+|++++... |....+|+.|+++. +.+..+|..+.... -.....|..+|.+++..|++.+|..+|+
T Consensus 97 ~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~--~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 174 (223)
T 4aez_C 97 VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI--DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQ 174 (223)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC--SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc--CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35566666553 23345788888764 35666777666543 3457788889999999999999999999
Q ss_pred HHHHh
Q psy3224 695 RALSS 699 (1278)
Q Consensus 695 ~al~~ 699 (1278)
..++.
T Consensus 175 ~Gi~~ 179 (223)
T 4aez_C 175 KGKRM 179 (223)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 99876
No 270
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=68.82 E-value=76 Score=32.70 Aligned_cols=101 Identities=15% Similarity=0.212 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHc---CC--HHHHHHHHHHHHHhhhhCCc-ccc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q psy3224 670 RQIWTTAAKLEEAH---GN--NAMVDKIIDRALSSLSANGV-EIN---REHWFKEAIEAEKAGSVHTCQALIRAIIGYGV 740 (1278)
Q Consensus 670 ~~~~~~la~~~~~~---g~--~~~A~~il~~al~~~~~~~~-~~~---~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~ 740 (1278)
.+.|..+..-.+.. |. -.....++++++..+.+... ..+ ...|+.+|..+ ..+..+|..+...++
T Consensus 72 L~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~------~~p~~if~~L~~~~I 145 (223)
T 4aez_C 72 LQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI------DEPVELFSFLAHHHI 145 (223)
T ss_dssp HHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC------SCHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc------CCHHHHHHHHHHCCc
Confidence 35666555444332 21 11245677777766544321 111 34666666532 466677777777665
Q ss_pred CccchHhhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 741 EQEDRKHTWMEDAESCANQGAYECARAIYAQALATFP 777 (1278)
Q Consensus 741 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P 777 (1278)
.... ...|..+|..+...|++.+|..+|+.+++..-
T Consensus 146 G~~~-AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 146 GQES-SIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp STTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred chhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 5432 56777778888888888888888888777653
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=61.48 E-value=64 Score=31.57 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy3224 968 RVMIQSAKLEWCLDNLERALQLLDEAIK--VFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032 (1278)
Q Consensus 968 ~~~~~la~~~~~~g~~~~A~~~l~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 1032 (1278)
.+|+.++.+. ++ +..+|..+.. +.-..+.+|..+|.++...|++.+|..+|..+++...
T Consensus 67 klWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 67 NLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp HHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 5555555542 22 4444544444 2335566666667777777777777777777766553
No 272
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.47 E-value=1.4e+02 Score=29.13 Aligned_cols=82 Identities=13% Similarity=0.218 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhhhCCc-ccc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHHH
Q psy3224 690 DKIIDRALSSLSANGV-EIN---REHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECA 765 (1278)
Q Consensus 690 ~~il~~al~~~~~~~~-~~~---~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~A 765 (1278)
..++++++..+.+... ..+ ...|+.+|..+ ..+..+|..+...++... .+..|..+|..+...|++.+|
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~-~AlfY~~wA~~lE~~~~~~~A 115 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVS-LAQFYISWAEEYEARENFRKA 115 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTT-BHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCcchh-hHHHHHHHHHHHHHcCCHHHH
Confidence 4566666665433211 112 44777777664 346778888887766543 367888899999999999999
Q ss_pred HHHHHHHHHhCCC
Q psy3224 766 RAIYAQALATFPS 778 (1278)
Q Consensus 766 ~~~~~~al~~~P~ 778 (1278)
..+|..+++....
T Consensus 116 ~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 116 DAIFQEGIQQKAE 128 (164)
T ss_dssp HHHHHHHHHTTCB
T ss_pred HHHHHHHHHcCCC
Confidence 9999999988644
No 273
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=55.76 E-value=2.4e+02 Score=31.01 Aligned_cols=24 Identities=13% Similarity=0.115 Sum_probs=17.1
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHH
Q psy3224 746 KHTWMEDAESCANQGAYECARAIY 769 (1278)
Q Consensus 746 ~~~~~~la~~~~~~g~~~~A~~~~ 769 (1278)
+.++..+|..+++.+++.+|...|
T Consensus 136 p~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 136 PELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCHHHHHHHH
Confidence 556777777777777777776665
No 274
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=47.31 E-value=1.9e+02 Score=27.34 Aligned_cols=55 Identities=11% Similarity=-0.014 Sum_probs=43.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Q psy3224 1187 LFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAA 1241 (1278)
Q Consensus 1187 ~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~l~~~~~~~G~~~~A~~~l~ka~~~ 1241 (1278)
.....|+.++--+.+...+.-.|-++..+..++..|.+.|+..++.+++.++.+.
T Consensus 100 ~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 100 ILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4456788888777887777767777889999999999999999999999888763
No 275
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=44.14 E-value=33 Score=20.98 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=13.2
Q ss_pred HHHHHHHHhHHHHHhhhHH
Q psy3224 152 ADMIYEEIDKRMDEKRKDY 170 (1278)
Q Consensus 152 ad~i~~~~d~~~~~~r~~~ 170 (1278)
||..|.+++..-++-||.|
T Consensus 3 ade~ykeled~qerlrk~r 21 (26)
T 4g3b_A 3 ADEXYKELEDXQERLRKXR 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 7889999886655545444
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.96 E-value=2.3e+02 Score=27.26 Aligned_cols=85 Identities=9% Similarity=0.109 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhhhhCCc-ccc---HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCccchHhhHHHHHHHHHHcCCHHH
Q psy3224 689 VDKIIDRALSSLSANGV-EIN---REHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYEC 764 (1278)
Q Consensus 689 A~~il~~al~~~~~~~~-~~~---~~~~l~~A~~~~~~g~~~~A~~i~~~~l~~~~~~~~~~~~~~~la~~~~~~g~~~~ 764 (1278)
...++++++..+.+... ..+ ...|+..|..+ ..+..+|..+...++.... +..|...|..+...|++.+
T Consensus 47 l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~------~dp~~if~~L~~~~IG~~~-AlfYe~wA~~lE~~g~~~~ 119 (152)
T 4a1g_A 47 LITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN------SDLHQFFEFLYNHGIGTLS-SPLYIAWAGHLEAQGELQH 119 (152)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB------SCHHHHHHHHHTTTTTTTB-HHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc------CCHHHHHHHHHHCCCcHHH-HHHHHHHHHHHHHcCCHHH
Confidence 45666777666543311 122 34677776553 4478888888887765433 6788899999999999999
Q ss_pred HHHHHHHHHHhCCCCH
Q psy3224 765 ARAIYAQALATFPSKK 780 (1278)
Q Consensus 765 A~~~~~~al~~~P~~~ 780 (1278)
|..+|+.+++....-.
T Consensus 120 A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 120 ASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHcCCccH
Confidence 9999999998865433
No 277
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=36.75 E-value=1.4e+02 Score=38.26 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=27.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 975 KLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQA 1027 (1278)
Q Consensus 975 ~~~~~~g~~~~A~~~l~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 1027 (1278)
..+...+.++-|. ..+...|.++-.-+.+|.++...|++++|..+|+++
T Consensus 818 ~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 818 EKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp HHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344455554333 234455555555566666666666666666666655
No 278
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.56 E-value=63 Score=19.95 Aligned_cols=18 Identities=33% Similarity=0.614 Sum_probs=12.0
Q ss_pred HHHHHHHHHhHHHHHhhh
Q psy3224 151 EADMIYEEIDKRMDEKRK 168 (1278)
Q Consensus 151 ead~i~~~~d~~~~~~r~ 168 (1278)
-||.+|.+++.--++-||
T Consensus 2 nadelykeledlqerlrk 19 (27)
T 3twe_A 2 NADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH
Confidence 489999998854433343
No 279
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=30.29 E-value=1.1e+02 Score=25.50 Aligned_cols=36 Identities=3% Similarity=0.067 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHH
Q psy3224 1181 LLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWA 1216 (1278)
Q Consensus 1181 l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~ 1216 (1278)
-..+|..+...|+++.|...|-+|+...|+=.+.+.
T Consensus 20 eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~ 55 (73)
T 3ax2_A 20 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQ 55 (73)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 345666666677777777777777776665444443
No 280
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.15 E-value=2.8e+02 Score=35.60 Aligned_cols=32 Identities=9% Similarity=-0.073 Sum_probs=17.2
Q ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy3224 929 ANPNSEEIWLAAVKLESENNEYERARRLLAKA 960 (1278)
Q Consensus 929 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 960 (1278)
..|.++..-+.+|+++...|++++|..+|+++
T Consensus 835 ~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kA 866 (950)
T 4gq2_M 835 WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTT 866 (950)
T ss_dssp GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444455555555555555555555554
No 281
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=27.23 E-value=98 Score=25.69 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=30.8
Q ss_pred HHHHHHHHHhCC-CCcchhhhhhhccccCCCCHHHHHHHHHhhC
Q psy3224 1232 AEVKKRCLAAEP-KHGENWCRVAKNVSNWKLPRETILSLVAKDL 1274 (1278)
Q Consensus 1232 ~~~l~ka~~~~P-~~~~~w~~~~k~~~~~~~~~~~~l~~~~~~~ 1274 (1278)
...|++++...| ..+..|..|+..|.. ++.+|+.+.....+
T Consensus 16 ~k~fe~ALa~~~~~tp~rWe~IA~~V~g--KT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 16 LQKLHCAFASLPKHKPGFWSEVAAAVGS--RSPEECQRKYMENP 57 (73)
T ss_dssp HHHHHHHHHHSCSSSSSHHHHHHHHTTT--SCHHHHHHHHHHSS
T ss_pred HHHHHHHHHHCCCCCccHHHHHHHHcCC--CCHHHHHHHHHHHH
Confidence 467778888776 567789888888875 88888888776543
No 282
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=27.21 E-value=2.6e+02 Score=32.21 Aligned_cols=63 Identities=6% Similarity=0.081 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--------CCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC
Q psy3224 972 QSAKLEWCLDNLERALQLLDEAIKV--------FPD--FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKK-CPHS 1034 (1278)
Q Consensus 972 ~la~~~~~~g~~~~A~~~l~~al~~--------~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 1034 (1278)
.+..+|++.++..-+..++...-.. +|. -....+.+|.++...++|.+|...+..|+.. +|.+
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 3445677777777777766544322 221 2466777888888888888888888888888 7764
No 283
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=25.80 E-value=6.6e+02 Score=27.17 Aligned_cols=27 Identities=11% Similarity=-0.071 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHH
Q psy3224 892 NSEEIWLAAVKLESENNEYERARRLLA 918 (1278)
Q Consensus 892 ~~~~~~~~la~l~~~~g~~~~A~~~l~ 918 (1278)
.++.++..+|..+...+++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 378999999999999999999988774
No 284
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=25.71 E-value=3e+02 Score=23.71 Aligned_cols=63 Identities=13% Similarity=0.014 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH--------------HHHHHHHHHHCCCcHHHHHHHHhcc
Q psy3224 1051 LIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIA--------------NTMMAKALQECPNAGILWAEAIFLE 1113 (1278)
Q Consensus 1051 ~~~A~~~l~kal~~~p~~~~~~~~l~~~~~~~g~~~~A--------------~~~~~kal~~~P~~~~~~~~~~~~~ 1113 (1278)
++.|+.+++++-....++++.|.....++......... ..++.++..+.-+++.++.....++
T Consensus 10 ~~~A~~YvnkVK~rF~~~p~~Y~~FL~IL~~y~~~~~~~~~~~~~~~~~~~~~~V~~~V~~LF~~h~DLl~~F~~FL 86 (89)
T 1g1e_B 10 FNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQFL 86 (89)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCSCCHHHHHHHHHHHTTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHhccCccccccccccccccHHHHHHHHHHHHccCHHHHHHHHHHC
Confidence 46777788877777777777777666655443222221 3677777777777777776655444
No 285
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=24.39 E-value=2.1e+02 Score=24.23 Aligned_cols=32 Identities=25% Similarity=0.169 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy3224 497 IKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCE 543 (1278)
Q Consensus 497 ~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~ 543 (1278)
.++|..++.++++. -..|++++|..+|..+++
T Consensus 8 ~~~Ai~lv~~Ave~---------------D~~g~y~eAl~lY~~aie 39 (83)
T 2v6y_A 8 EDMARKYAILAVKA---------------DKEGKVEDAITYYKKAIE 39 (83)
T ss_dssp HHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHHH
Confidence 34566666666443 566788888888887775
No 286
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=24.11 E-value=2.1e+02 Score=24.33 Aligned_cols=33 Identities=18% Similarity=0.076 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy3224 496 DIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCE 543 (1278)
Q Consensus 496 ~~~~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~ 543 (1278)
-.++|..++.++++. -..|++++|..+|.++++
T Consensus 15 ~~~~Ai~lv~~Ave~---------------D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 15 LEEMARKYAINAVKA---------------DKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------------HHhccHHHHHHHHHHHHH
Confidence 345677777776544 566788888888887775
No 287
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=24.01 E-value=1.5e+02 Score=24.54 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy3224 1006 MKGQIEEQKNLLDKAHDTFSQAIKKCPHSV 1035 (1278)
Q Consensus 1006 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 1035 (1278)
.+|..+...|++++|...|-+|+..||.-.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 345555556666666666666666666543
No 288
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.73 E-value=7.3e+02 Score=26.95 Aligned_cols=49 Identities=8% Similarity=-0.044 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHhccCCCCChhHHHHHHHHhccCcc
Q psy3224 1072 WLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPH 1134 (1278)
Q Consensus 1072 ~~~l~~~~~~~g~~~~A~~~~~kal~~~P~~~~~~~~~~~~~~~~~~~~~A~~~l~k~~~~p~ 1134 (1278)
+.......++.+++..|..+.++.++..|....+ ++|.+++..+..+|.
T Consensus 210 Lr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a--------------~qArkil~~ce~~~~ 258 (325)
T 3mv2_A 210 LQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRA--------------EQARKIKNKADSMAS 258 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHH--------------HHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHH--------------HHHHHHHHHHhcCCC
Confidence 3444457889999999999999999999864432 348888888866555
No 289
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=22.43 E-value=1.2e+02 Score=26.60 Aligned_cols=37 Identities=3% Similarity=0.056 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChhHHHH
Q psy3224 1181 LLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAY 1217 (1278)
Q Consensus 1181 l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d~~~~ 1217 (1278)
-..+|..+...|+++.|+.+|-+|+...|+=.+.+.-
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i 59 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQV 59 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4567888888888888888888888877764444433
No 290
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=21.91 E-value=4.7e+02 Score=34.46 Aligned_cols=32 Identities=22% Similarity=0.197 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy3224 761 AYECARAIYAQALATFPSKKSIWLRAAYFEKN 792 (1278)
Q Consensus 761 ~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~ 792 (1278)
+.+++.++|+++++.+|++..++..+.+.+..
T Consensus 1122 ~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~ 1153 (1354)
T 3lxu_X 1122 ELEMAEKIYNDVVAAHPKHLQANLLLIQNIES 1153 (1354)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCccHHHHHHHHHhhhh
Confidence 46789999999999999999999888776654
No 291
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=21.25 E-value=3.8e+02 Score=22.81 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCHHHHHHHHhcCCchHHHHHHHHHHH
Q psy3224 499 KARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARLQPVDTARAVIAQAVR 573 (1278)
Q Consensus 499 ~A~~~l~~~l~~~P~~~~~wl~~arl~~~~g~~~~A~~~l~~al~~~P~s~~lwl~~a~L~~~~~A~~~l~kaL~ 573 (1278)
.|..++.++++. ...|++++|+.+|..+++. ++.++..+.....+..++.-+.
T Consensus 15 ~A~~lv~~Ave~---------------D~~g~y~eAl~lY~~Aie~-------ll~alk~e~d~~~k~~lr~K~~ 67 (86)
T 4a5x_A 15 AAATVLKRAVEL---------------DSESRYPQALVCYQEGIDL-------LLQVLKGTKDNTKRCNLREKIS 67 (86)
T ss_dssp HHHHHHHHHHHH---------------HHTTCHHHHHHHHHHHHHH-------HHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---------------HHcCCHHHHHHHHHHHHHH-------HHHHHhhCCCHHHHHHHHHHHH
No 292
>1mke_A WIP - N-WAsp, fusion protein consisting of wiskott-aldrich syndrome protein interacting protein...; polyproline, protein-protein complex; NMR {Rattus norvegicus} SCOP: b.55.1.4
Probab=21.22 E-value=38 Score=32.67 Aligned_cols=27 Identities=15% Similarity=0.350 Sum_probs=21.5
Q ss_pred ccCCCCCCCCCChHHHHHHHHHHhHHHHHhhhH
Q psy3224 137 GSLFNKDPYDKDDEEADMIYEEIDKRMDEKRKD 169 (1278)
Q Consensus 137 ~~l~~~~~~~~~d~ead~i~~~~d~~~~~~r~~ 169 (1278)
|-.|+ |++||...+..|..++..|.++
T Consensus 120 GLnFa------de~EA~~F~~~V~~~l~~~~~~ 146 (152)
T 1mke_A 120 ALNFA------NEEEAKKFRKAVTDLLGRRQRK 146 (152)
T ss_dssp EEEES------SHHHHHHHHHHHHHHHHHCC--
T ss_pred EEeeC------CHHHHHHHHHHHHHHHHHHHhh
Confidence 44675 9999999999999999877654
No 293
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=21.14 E-value=4e+02 Score=23.01 Aligned_cols=10 Identities=0% Similarity=-0.170 Sum_probs=3.9
Q ss_pred CCHHHHHHHH
Q psy3224 794 GTRESLETLL 803 (1278)
Q Consensus 794 g~~~~A~~~l 803 (1278)
|++++|+.+|
T Consensus 29 g~y~eAl~~Y 38 (93)
T 1wfd_A 29 SRYQQALVCY 38 (93)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 3444433333
No 294
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=20.40 E-value=1.8e+02 Score=29.38 Aligned_cols=34 Identities=6% Similarity=0.017 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChh
Q psy3224 1180 VLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGD 1213 (1278)
Q Consensus 1180 ~l~~lg~~~~~~g~~~~A~~~~~kal~~~P~~~d 1213 (1278)
..+.+|.+++..++|.+|.+.|..|+...|..+.
T Consensus 16 Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~ 49 (203)
T 3t5x_A 16 YKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ 49 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH
Confidence 7889999999999999999999999999887653
Done!