RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3224
(1278 letters)
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 178 bits (452), Expect = 1e-47
Identities = 68/532 (12%), Positives = 152/532 (28%), Gaps = 71/532 (13%)
Query: 628 LLSRAVECCPTSVELWLALARL---ETYENARKVLNKARENIPTDRQIWTTAAKLEEAHG 684
+ + +E P ++ W L R + + ARK + P+ + W + E
Sbjct: 1 MAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAK 60
Query: 685 NNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAI--IGYGVEQ 742
N V+K+ R L + + + +E + QA A+ IG +
Sbjct: 61 NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMS 120
Query: 743 EDRKHTWMEDAESC------ANQGAYECARAIYAQALAT-FPSKKSIWLRAAYFEKNHGT 795
++ + A R +Y + + + +W +E+
Sbjct: 121 YQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI 180
Query: 796 RESLETLLQKAVAHCPKSEVLWLMGAK-------------------SNKKSIWLRAAYFE 836
+ + + ++ + V + + +W + +E
Sbjct: 181 HLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWE 240
Query: 837 KNHGTRESLETLLQK--------AVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQ 888
K++ R +TL+ K + +W A+ + + A +G
Sbjct: 241 KSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG------- 293
Query: 889 ANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENN 948
++ A + + N YERA L + ++ A E
Sbjct: 294 ------DMNNAKLFSDEAANIYERAISTL------------LKKNMLLYFAYADYEESRM 335
Query: 949 EYERARRLLAKARASAP--TPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMM 1006
+YE+ + + A V IQ K + ++ + +A + +++
Sbjct: 336 KYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT 395
Query: 1007 KGQIEEQ-KNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRN 1065
+E A F +KK + + R + E+
Sbjct: 396 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455
Query: 1066 P----NCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLE 1113
E+W + E G + + A+ ++
Sbjct: 456 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALLVD 507
Score = 165 bits (417), Expect = 4e-43
Identities = 66/527 (12%), Positives = 150/527 (28%), Gaps = 63/527 (11%)
Query: 570 QAVRHIPTSVRIWIKAADL--ETETKAKRRVYRKALEHIPNSVRLWKAAVELE----DPE 623
+ + P + W R+ Y + + P+S R WK +E E + +
Sbjct: 4 KKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYD 63
Query: 624 DARILLSRAVECCPTSVELWLALARL---------ETYENARKVLNKARENIPTD---RQ 671
L R + ++LW E + + A + I + Q
Sbjct: 64 KVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQ 122
Query: 672 IWTTAAKLEEAHGNNA---------MVDKIIDRALSSLSANGVEINREHWFKEAIEAEKA 722
IW + V ++ R + IN E +++ + E+
Sbjct: 123 IWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-----PMINIEQLWRDYNKYEEG 177
Query: 723 GSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSI 782
++H + +I ++ E+ +G A ++ Q + +
Sbjct: 178 INIHLAKKMIEDR----SRDYMNARRVAKEYET-VMKGLDRNAPSVPPQNTPQEAQQVDM 232
Query: 783 WLRAAYFEKNHGTRESLETLLQK--------AVAHCPKSEVLWLMGAK--SNKKSIWLRA 832
W + +EK++ R +TL+ K + +W A+ +
Sbjct: 233 WKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEK 292
Query: 833 AYFEKNHGTRESLETLLQKAV-AHCPKSEVLWLMGAKSKWLAGDVPAARGIL-SLAFQAN 890
+ + ++A+ K+ +L+ A + I L +
Sbjct: 293 GDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED 352
Query: 891 PNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESE-NNE 949
+ +++ +K + R + KAR + +++ A +E + +
Sbjct: 353 IDPTLVYIQYMKFARRAEGIKSGRMIFKKAR------EDARTRHHVYVTAALMEYYCSKD 406
Query: 950 YERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFP----DFAKLW 1004
A ++ P ++ L+ L + + ++W
Sbjct: 407 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 466
Query: 1005 MMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKML 1051
E L + A L +R K +
Sbjct: 467 ARFLAFESNIGDLASILKVEKRRFTAFREEYEGK-ETALLVDRYKFM 512
Score = 145 bits (365), Expect = 2e-36
Identities = 71/506 (14%), Positives = 153/506 (30%), Gaps = 72/506 (14%)
Query: 495 NDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLE 554
I KAR + + P+ W E L + + DLW
Sbjct: 26 QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKC 84
Query: 555 AAR-----LQPVDTARAVIAQA-------VRHIPTSVRIWIKAADLETETKAK------- 595
+ + + +AQA + S +IW+ + +A
Sbjct: 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQ 144
Query: 596 -----RRVYRKALEH-IPNSVRLWKAAVELEDPEDARILLSRAVECCPTSVELWLALARL 649
RRVY++ + + N +LW+ + E+ + + + +
Sbjct: 145 RITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEY 204
Query: 650 ETY-----ENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANG 704
ET NA V + +W + E+++ +I + +
Sbjct: 205 ETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264
Query: 705 VEINR---EHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGA 761
+ + + W++ A E++ + E + +
Sbjct: 265 LLVLGHHPDIWYEAAQYLEQSSKL-----------------------LAEKGDMNNAKLF 301
Query: 762 YECARAIYAQALATF-PSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMG 820
+ A IY +A++T ++ A +E++ E + ++ + +A L
Sbjct: 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLV--- 358
Query: 821 AKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKW-LAGDVPAA 879
+++ F + +S + +KA +++ A ++ + D A
Sbjct: 359 --------YIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 410
Query: 880 RGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLA 939
I L + + E LA + S NE R L + S EIW
Sbjct: 411 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL--PPEKSGEIWAR 468
Query: 940 AVKLESENNEYERARRLLAKARASAP 965
+ ES + ++ + +
Sbjct: 469 FLAFESNIGDLASILKVEKRRFTAFR 494
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 144 bits (363), Expect = 2e-36
Identities = 50/509 (9%), Positives = 128/509 (25%), Gaps = 92/509 (18%)
Query: 599 YRKALEHIPNSVRLWKAAVELE----DPEDARILLSRAVECCPTSVELWLA-LARLETYE 653
+ + +S D L R ++ +++LW+ + +
Sbjct: 3 AEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVS 61
Query: 654 NARKVLNKARE----NIPTDRQ---IWT----TAAKLEEAHGNNAMVDKIIDRALSSLSA 702
+ L + E ++ K+E+ + RAL +
Sbjct: 62 QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--- 118
Query: 703 NGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAY 762
+ +K+ E + T + ++ +
Sbjct: 119 --PMGSLSELWKDFENFELELNKITGKKIV-----------------------GDTLPIF 153
Query: 763 ECARAIYAQALA-TFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGA 821
+ + Y Q R E +G + + + + +
Sbjct: 154 QSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLG-GRPHESRMHFIHNYILD----S 208
Query: 822 KSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARG 881
+ ++ + + G +E + ++++ + + G
Sbjct: 209 FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGL-------------- 254
Query: 882 ILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAV 941
+ E Y +R + A++ + + + + +
Sbjct: 255 ---------------------VMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL 293
Query: 942 KLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDN-LERALQLLDEAIKVFPDF 1000
+ E R+L + P V I A +E+ + + PD
Sbjct: 294 NYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS 353
Query: 1001 AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEK 1060
L + + A F K+ + +W + E + R ++++
Sbjct: 354 TLLKEEFFLFLLRIGDEENARALF----KRLEKTSRMWDSMIEYEFMVGSMELFRELVDQ 409
Query: 1061 GRLRNPNCAELWLAAIRVEIRAGLKDIAN 1089
A L R E ++ I
Sbjct: 410 KMDAIKADAILPPLPPR-EHNVQMEGILG 437
Score = 128 bits (322), Expect = 4e-31
Identities = 51/447 (11%), Positives = 131/447 (29%), Gaps = 51/447 (11%)
Query: 576 PTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLWKAAVE-LEDPEDARILLSRAVE 634
P+++ + + + ++ ++ + L+ ++ LW +E + + L E
Sbjct: 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYE 72
Query: 635 CCPTSVELWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIID 694
L + E Y ++ + + K+E+ +
Sbjct: 73 ---------FTLGQFENYWDSYGLYKEY----------IEEEGKIEDEQTRIEKIRNGYM 113
Query: 695 RALSSLSANGVEINREHWFKE----AIEAEKA---------GSVHTCQALIRAIIGYGVE 741
RAL + + E+ ++ E I +K S Q + I G+ V+
Sbjct: 114 RALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVK 173
Query: 742 QEDRKHTW-MEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLE 800
R ME+ + I+ L +F + ++ + + G +E +
Sbjct: 174 NAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAK 233
Query: 801 TLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSE 860
++++ + + G + A + E + V + +
Sbjct: 234 KVVERGIEMSDGMFLSLYYGL------VMDEEAVYGDLKRKYSMGEAESAEKV-FSKELD 286
Query: 861 VLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKA 920
+L + + R + A + +
Sbjct: 287 LLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSS- 345
Query: 921 RAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCL 980
+P+S + + E AR L + ++ + + E+ +
Sbjct: 346 -----GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEKTSR---MWDSMIEYEFMV 397
Query: 981 DNLERALQLLDEAIKVFPDFAKLWMMK 1007
++E +L+D+ + A L +
Sbjct: 398 GSMELFRELVDQKMDAIKADAILPPLP 424
Score = 96.1 bits (238), Expect = 1e-20
Identities = 52/438 (11%), Positives = 120/438 (27%), Gaps = 50/438 (11%)
Query: 827 SIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAK-SKWLAGDVPAARGILSL 885
S + A SLE+L + + + LW++ + + ++ +
Sbjct: 15 SAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEF 73
Query: 886 AFQA---NPNSEEIWLAAV----KLESENNEYERARRLLAKARAQAGAFQANPNSEEIWL 938
+S ++ + K+E E E+ R +A + E+W
Sbjct: 74 TLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMG-----SLSELWK 128
Query: 939 AAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFP 998
E E N+ ++++ + + + L R + K
Sbjct: 129 DFENFELELNKIT-GKKIVGDTLPIFQSSF------QRYQQIQPLIRGWSV-----KNAA 176
Query: 999 DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVL 1058
L M G + + H + + ++ ++ + KA+ V+
Sbjct: 177 RLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVV 236
Query: 1059 EKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNA--GILWAEAIFLEPRP 1116
E+G + + L L V + + E
Sbjct: 237 ERG-IEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNY 295
Query: 1117 QRKTKSVDA----LKKCEHD---PHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVD 1169
K + ++ + ++ PHV + + + + ++ +
Sbjct: 296 VLKKRGLELFRKLFIELGNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSG--------- 346
Query: 1170 ALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEE 1229
L K + + R F R K W ++E + G+ E
Sbjct: 347 -LLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEKTSRM----WDSMIEYEFMVGSME 401
Query: 1230 TQAEVKKRCLAAEPKHGE 1247
E+ + + A
Sbjct: 402 LFRELVDQKMDAIKADAI 419
Score = 68.7 bits (167), Expect = 5e-12
Identities = 28/270 (10%), Positives = 74/270 (27%), Gaps = 26/270 (9%)
Query: 479 YLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLI 538
L DL+ G + + + ++ + + G+ + A+ ++
Sbjct: 177 RLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVV 236
Query: 539 MKGCEENQTSEDLWLEAARL---QPVDTARAVIAQAVRHIPTSVR------IWIKAADLE 589
+G E + + + + V + I +
Sbjct: 237 ERGIEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV 296
Query: 590 TET---KAKRRVYRKALEHIPNSVRLWKAAVELE-----DPEDARILLSRAVECCPTSVE 641
+ + R+++ + A +E + S + P S
Sbjct: 297 LKKRGLELFRKLFIELGNEGVGPHVFIYCA-FIEYYATGSRATPYNIFSSGLLKHPDSTL 355
Query: 642 LWLALARLET----YENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRAL 697
L ENAR + + + +W + + E G+ + +++D+ +
Sbjct: 356 LKEEFFLFLLRIGDEENARALFKRLEKTSR----MWDSMIEYEFMVGSMELFRELVDQKM 411
Query: 698 SSLSANGVEINREHWFKEAIEAEKAGSVHT 727
++ A+ + G H
Sbjct: 412 DAIKADAILPPLPPREHNVQMEGILGRYHC 441
Score = 43.7 bits (102), Expect = 3e-04
Identities = 24/249 (9%), Positives = 67/249 (26%), Gaps = 24/249 (9%)
Query: 1024 FSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIR-VEIRA 1082
+ + S + A K S+ + L+ +LW+ I V +
Sbjct: 3 AEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRC-LKKSYNLDLWMLYIEYVRKVS 61
Query: 1083 GLKDIANTMMAKALQECP---NAGILWAEAIFLEPRPQRKTKSVDALKK-------CEHD 1132
K + L + ++ L+ E I E + + + ++ ++
Sbjct: 62 QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMG 121
Query: 1133 PHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWC-- 1190
L + N+ + + + S ++ + +
Sbjct: 122 SLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDL 181
Query: 1191 ----------ENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLA 1240
+ N + + + ++ ++ I G +E +V +R +
Sbjct: 182 EMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241
Query: 1241 AEPKHGENW 1249
+
Sbjct: 242 MSDGMFLSL 250
Score = 39.5 bits (91), Expect = 0.007
Identities = 27/272 (9%), Positives = 67/272 (24%), Gaps = 30/272 (11%)
Query: 991 DEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIM-LANLEERRK 1049
+E + V M + F + +KK ++ LW++ + + + +
Sbjct: 4 EEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQ 62
Query: 1050 MLIKARSVLEKGRLR---NPNCAELWLAAIRVEIRAGLKDIANTMMAKALQE-------- 1098
K V E + + L+ I E + + +
Sbjct: 63 KKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGS 122
Query: 1099 -----------CPNAGILWAEAIFLEPRP---QRKTKSVDALKKCEHDPHVLLAVSKLFW 1144
+ + I + P + A
Sbjct: 123 LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLE 182
Query: 1145 CENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRT 1204
EN + R R + L + V S+ + +K ++ R
Sbjct: 183 MENGMKLGGRPHESRMHFIHNY---ILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERG 239
Query: 1205 VKIDPDLGDAWAYFYKFEIINGTEETQAEVKK 1236
+++ + + Y + + + +
Sbjct: 240 IEMSDGMFLSLYYGLVMDEEAVYGDLKRKYSM 271
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 122 bits (307), Expect = 1e-30
Identities = 59/327 (18%), Positives = 104/327 (31%), Gaps = 57/327 (17%)
Query: 929 ANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQ 988
++W ++ E N + L+ K A E CL L
Sbjct: 3 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAY-----------EQCLLVLGHHPD 51
Query: 989 LLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKK-CPHSVPLWIMLANLEER 1047
+ EA + +KL KG + K D+A + + +AI ++ L+ A+ EE
Sbjct: 52 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111
Query: 1048 RKMLIKARSVLEKGRLRNPNCAEL-WLAAIRVEIRAGLKDIANTMMAKALQECPNAGILW 1106
R K S+ + L ++ ++ RA + KA ++ ++
Sbjct: 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 171
Query: 1107 AEAIFLEPRPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTK 1166
A +E + +K+ +S + +
Sbjct: 172 VTAALME------------------------------YYCSKD----KSVAFKIFE---- 193
Query: 1167 SVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDP----DLGDAWAYFYKFE 1222
LKK P +LA N++ R F R + G+ WA F FE
Sbjct: 194 --LGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE 251
Query: 1223 IINGTEETQAEVKKRCLAAEPKHGENW 1249
G + +V+KR A + E
Sbjct: 252 SNIGDLASILKVEKRRFTAFREEYEGK 278
Score = 114 bits (286), Expect = 8e-28
Identities = 40/302 (13%), Positives = 86/302 (28%), Gaps = 40/302 (13%)
Query: 827 SIWLRAAYFEKNHGTRESLETLLQK--------AVAHCPKSEVLWLMGAKSKWLAGDVPA 878
+W + +EK++ R +TL+ K + +W A+ + + A
Sbjct: 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 68
Query: 879 ARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWL 938
+G ++ A + + N YERA L + ++
Sbjct: 69 EKG-------------DMNNAKLFSDEAANIYERAISTL------------LKKNMLLYF 103
Query: 939 AAVKLESENNEYERARRLLAKARASAPTPR--VMIQSAKLEWCLDNLERALQLLDEAIKV 996
A E +YE+ + + A V IQ K + ++ + +A +
Sbjct: 104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163
Query: 997 FPDFAKLWMMKGQIEEQ-KNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKAR 1055
+++ +E A F +KK + + R
Sbjct: 164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTR 223
Query: 1056 SVLEKGRLRNP----NCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIF 1111
+ E+ E+W + E G + + A+
Sbjct: 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEGKETALL 283
Query: 1112 LE 1113
++
Sbjct: 284 VD 285
Score = 103 bits (259), Expect = 3e-24
Identities = 40/310 (12%), Positives = 94/310 (30%), Gaps = 35/310 (11%)
Query: 671 QIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQA 730
+W + E+++ +I + + +++ +
Sbjct: 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFA------------YEQCLLV--------LGH 48
Query: 731 LIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATF-PSKKSIWLRAAYF 789
E E + + + A IY +A++T ++ A +
Sbjct: 49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108
Query: 790 EKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLL 849
E++ E + ++ + +A L ++++ F + +S +
Sbjct: 109 EESRMKYEKVHSIYNRLLAIEDIDPTL-----------VYIQYMKFARRAEGIKSGRMIF 157
Query: 850 QKAVAHCPKSEVLWLMGAKSKW-LAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENN 908
+KA +++ A ++ + D A I L + + E LA + S N
Sbjct: 158 KKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLN 217
Query: 909 EYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPR 968
E R L + S EIW + ES + ++ + +
Sbjct: 218 EDNNTRVLFERVLTSGSL--PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275
Query: 969 VMIQSAKLEW 978
++A L
Sbjct: 276 EGKETALLVD 285
Score = 92.8 bits (230), Expect = 2e-20
Identities = 39/297 (13%), Positives = 81/297 (27%), Gaps = 42/297 (14%)
Query: 576 PTSVRIWIKAADLE-----------TETKAKRRVYRKALEHIPNSVRLWKAAVELEDPED 624
V +W K E TK Y + L + + +W A + +
Sbjct: 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLE--- 61
Query: 625 ARILLSRAVECCPTSVELWLALARLETYENARKVLNKARENI-PTDRQIWTTAAKLEEAH 683
+ E + A + +A + + ++ A EE+
Sbjct: 62 ---------QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112
Query: 684 GNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTC-QALIRAIIGYGVEQ 742
V I +R L+ + + + + A +A + + +A +
Sbjct: 113 MKYEKVHSIYNRLLAIEDIDPTLV----YIQYMKFARRAEGIKSGRMIFKKAR----EDA 164
Query: 743 EDRKHTWMEDAE-SCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLET 801
R H ++ A A I+ L + L + + +
Sbjct: 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRV 224
Query: 802 LLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPK 858
L ++ + IW R FE N G S+ + ++ +
Sbjct: 225 LFERVLTSGSLP--------PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273
Score = 85.1 bits (210), Expect = 7e-18
Identities = 34/273 (12%), Positives = 83/273 (30%), Gaps = 34/273 (12%)
Query: 496 DIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEA 555
K+ + +HP W +A+ E + K+ A + + +
Sbjct: 31 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS---------- 80
Query: 556 ARLQPVDTARAVIAQAVRHI-PTSVRIWIKAADLETETKAK---RRVYRKALEHIPN-SV 610
D A + +A+ + ++ ++ AD E +Y + L
Sbjct: 81 ------DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT 134
Query: 611 RLWKAAVELE----DPEDARILLSRAVECCPTSVELWLALARLE-----TYENARKVLNK 661
++ ++ + R++ +A E T +++ A +E A K+
Sbjct: 135 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL 194
Query: 662 ARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEK 721
+ + + + +R L+S S + + + E
Sbjct: 195 GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK--SGEIWARFLAFES 252
Query: 722 -AGSVHTCQALI-RAIIGYGVEQEDRKHTWMED 752
G + + + R + E E ++ + D
Sbjct: 253 NIGDLASILKVEKRRFTAFREEYEGKETALLVD 285
Score = 54.7 bits (131), Expect = 7e-08
Identities = 17/135 (12%), Positives = 40/135 (29%), Gaps = 12/135 (8%)
Query: 495 NDIKKARLLLKSVRETNPNHPPAWIASARLE-EVTGKVQAARNLIMKGCEENQTSEDLWL 553
IK R++ K RE ++ +A +E + A + G ++ + L
Sbjct: 148 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVL 207
Query: 554 EAARLQ----PVDTARAVIAQAVRHIPTS----VRIWIKAADLETE---TKAKRRVYRKA 602
+ R + + + IW + E+ + +V ++
Sbjct: 208 AYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267
Query: 603 LEHIPNSVRLWKAAV 617
+ A+
Sbjct: 268 FTAFREEYEGKETAL 282
Score = 37.0 bits (85), Expect = 0.037
Identities = 26/201 (12%), Positives = 53/201 (26%), Gaps = 37/201 (18%)
Query: 1064 RNPNCAELWLAAIRVEIRAGLKDIANTMMAK--------ALQECPNAGILWAEAIFLEPR 1115
+ ++W I+ E L+ T++ K L + +W EA
Sbjct: 3 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLE- 61
Query: 1116 PQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCE 1175
+ K + A N ++ A+
Sbjct: 62 --------QSSKLLAEKGDMNNAKLFSDEAANIYER------------------AISTLL 95
Query: 1176 HDPHVL-LAVSKLFWCENKNQKCREWFNRTVKIDP-DLGDAWAYFYKFEIINGTEETQAE 1233
+L A + K +K +NR + I+ D + + KF ++
Sbjct: 96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 155
Query: 1234 VKKRCLAAEPKHGENWCRVAK 1254
+ K+ + A
Sbjct: 156 IFKKAREDARTRHHVYVTAAL 176
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1,
PCF11, structural protein; 2.30A {Kluyveromyces lactis}
PDB: 4e85_A 4eba_A
Length = 679
Score = 119 bits (298), Expect = 1e-27
Identities = 78/592 (13%), Positives = 165/592 (27%), Gaps = 83/592 (14%)
Query: 618 ELEDPEDARILLSRAVECCPTSVELWLALARLE----TYENARKVLNKARENIPTDRQIW 673
+ D D L+ +E PT + L++ L + ++ + +K + P IW
Sbjct: 44 RVRDESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIW 103
Query: 674 TTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTC----- 728
LE I LS + W K + T
Sbjct: 104 CMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEAR 163
Query: 729 ----QALIRAIIGYGVEQEDRKHTWM---------EDAESCANQGAYECARAIYAQALAT 775
QA + + + W + Q + R +Y L
Sbjct: 164 NIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQ 223
Query: 776 FP-----------------------------SKKSIWLRAAYFEKNHGTRESLETLLQKA 806
S + + R+ Y + + T+ L+ L
Sbjct: 224 PMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKG-LKRNLPIT 282
Query: 807 VAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQ-------KAVAHCPKS 859
+ +S + + IWL +E ++ S + +A H +
Sbjct: 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFA 342
Query: 860 EVLWLMGAK-SKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLA 918
+W A D L L Q PNS + + + N + +
Sbjct: 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTIL 402
Query: 919 KARAQAGA----------------FQANPNSEEIWLAAVKLESENNEYERARRLLAKARA 962
+ Q ++ + +R++ K R
Sbjct: 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462
Query: 963 SAP--TPRVMIQSAKLEWCLD-NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDK 1019
TP + +++A +E+ + + + A ++L+ +K F + N +
Sbjct: 463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 522
Query: 1020 AHDTFSQAIKKCPH---SVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAI 1076
F +I K ++ + E + L R++ ++ + P +L
Sbjct: 523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTN 582
Query: 1077 RVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKK 1128
+ ++ + + + +++ I R R+ + A KK
Sbjct: 583 KYKV-LDVNYLQRLELDYMVRDVMPEAIALDRGSNNLKRTMREEEDGQAFKK 633
Score = 107 bits (268), Expect = 6e-24
Identities = 63/536 (11%), Positives = 145/536 (27%), Gaps = 63/536 (11%)
Query: 748 TWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFE---KNHGTRESLETLLQ 804
+++ + + ++ + + FP +IW E +E +L
Sbjct: 68 LYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127
Query: 805 KAVAHCPK--SEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVL 862
+ ++ LWL +K + E + ++ + ++ K PKS
Sbjct: 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQF 187
Query: 863 WLM--------GAKSKW-LAGDVPAARGILSLAFQANP-NSEEIWLAAVKLESENNEYER 912
W +K+ V R + E +W Y +
Sbjct: 188 WNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMW----------QRYTQ 237
Query: 913 ARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQ 972
+ + + A+ + + + +R + + P+
Sbjct: 238 WEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEY 297
Query: 973 SAK--------LEWCLDN---------LERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN 1015
+ + W DN R + +A + ++W + +KN
Sbjct: 298 DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKN 357
Query: 1016 LLDK-AHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLA 1074
+ P+S L L+ E + + + + +
Sbjct: 358 TDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILS-----------CID 406
Query: 1075 AIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPH 1134
I +++ A ++D A Q ++ + R Q S KC
Sbjct: 407 RIHLDLAALMEDDPTNESAIN-QLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK 465
Query: 1135 VLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKN 1194
L ++ + ++ V LK D + N+
Sbjct: 466 --LVTPDIYLENAYIEYHISKDTKTACKVLEL---GLKYFATDGEYINKYLDFLIYVNEE 520
Query: 1195 QKCREWFNRTVKIDPDLGDA---WAYFYKFEIINGTEETQAEVKKRCLAAEPKHGE 1247
+ + F ++ D + FE G+ + ++KR P+ +
Sbjct: 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576
Score = 89.0 bits (219), Expect = 4e-18
Identities = 55/426 (12%), Positives = 124/426 (29%), Gaps = 52/426 (12%)
Query: 519 IASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARLQPVDTARAVIAQAVRHIPTS 578
A + E++ + AR+L ++ + + + + +
Sbjct: 246 TARRHIGELSAQYMNARSLY----QDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301
Query: 579 VRIWIKAADLETETKAK----------RRVYRKALEHIPNSVRLWKAAVELE-----DPE 623
+ IW++ E++ K + VY +A +H+ + +W + D
Sbjct: 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDST 361
Query: 624 DARILLSRAVECCPTSVELWLALA----RLETYENARKVLNKARENIPTDRQIWTTAAKL 679
L +C P S L +L+ + + I D A L
Sbjct: 362 VITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD------LAAL 415
Query: 680 EEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYG 739
E N + L+ V + K + + ++ ++
Sbjct: 416 MEDDPTNESAINQLKSKLTY-----VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTP- 469
Query: 740 VEQEDRKHTWMEDAESCAN-QGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRES 798
++E+A + + A + L F + + F
Sbjct: 470 -------DIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQ 522
Query: 799 LETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPK 858
+++L + ++ S K I+ + +FE G+ S+ TL ++ P+
Sbjct: 523 VKSLFESSIDKISDSH---------LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573
Query: 859 SEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLA 918
L K K L + + + P + + + L+ E E +
Sbjct: 574 VNKLEEFTNKYKVLDVNYLQRLELDYMVRDVMPEAIALDRGSNNLKRTMREEEDGQAFKK 633
Query: 919 KARAQA 924
+
Sbjct: 634 FKANED 639
Score = 44.3 bits (103), Expect = 3e-04
Identities = 11/71 (15%), Positives = 23/71 (32%)
Query: 1011 EEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAE 1070
+ + I++ P + L++ L K + +K R P A
Sbjct: 42 TSRVRDESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMAN 101
Query: 1071 LWLAAIRVEIR 1081
+W + +E
Sbjct: 102 IWCMRLSLEFD 112
Score = 42.0 bits (97), Expect = 0.001
Identities = 48/345 (13%), Positives = 94/345 (27%), Gaps = 34/345 (9%)
Query: 958 AKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLL 1017
+ M S + + + + L++ I+ P L++ +
Sbjct: 23 SMTGGQQMGRGSMSTSLRPTSRVRDESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQW 82
Query: 1018 DKAHDTFSQAIKKCPHSVPLWIMLANLE---ERRKMLIKARSVLEKGRLRNPNC--AELW 1072
+ ++TF + + P +W M +LE VL + + LW
Sbjct: 83 KQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142
Query: 1073 LAAIR------------VEIRAGLKDIANTMMAKALQECPNAGILWAEAI-FLEPRP--- 1116
L+ I E R + ++ K P + W E + FLE
Sbjct: 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202
Query: 1117 -----QRKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDAL 1171
QR K P L + + + + R + + ++A
Sbjct: 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNAR 262
Query: 1172 KKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAWAYFYKFEIINGTEETQ 1231
+ ++ + + NQ + + D W + ++E N E +
Sbjct: 263 SLYQDWLNITKGLKRNLP-ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSD 321
Query: 1232 AEVKKR-------CLAAEPKHGENWCRVAKNVSNWKLPRETILSL 1269
K R E W +A I
Sbjct: 322 DLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKY 366
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 89.5 bits (222), Expect = 2e-18
Identities = 43/327 (13%), Positives = 98/327 (29%), Gaps = 10/327 (3%)
Query: 753 AESCANQGAYECARAIYAQALATFPSKKSIWLRA-AYFEKNHGTRESLETLLQKAVAHCP 811
Q Y+CA + + L + + A Y R + LL K +
Sbjct: 91 RHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYAR--AKCLLTKEDLYNR 148
Query: 812 KSEVLWLMGAKSNKKSIWLRAAYF----EKNHGTRESLETLLQKAVAHCPKSEVLWLMGA 867
S +L K W A ++ LL + ++ + +L G
Sbjct: 149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRG- 207
Query: 868 KSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAF 927
+ + A+ A + E + V + E L+ K +
Sbjct: 208 QVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWD--LVLKLNYSTYSK 265
Query: 928 QANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERAL 987
+ +++ + S +E RA L+ + +++ A + L
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325
Query: 988 QLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEER 1047
+ + +++ P ++ + + +K + + + + P W+ +
Sbjct: 326 AITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLC 385
Query: 1048 RKMLIKARSVLEKGRLRNPNCAELWLA 1074
+ +AR K +P W+
Sbjct: 386 VNKISEARRYFSKSSTMDPQFGPAWIG 412
Score = 67.6 bits (165), Expect = 2e-11
Identities = 43/377 (11%), Positives = 108/377 (28%), Gaps = 40/377 (10%)
Query: 713 FKEAIEA-EKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQ 771
++ A+ + + ++ + + N ++ A+ Y +
Sbjct: 166 WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225
Query: 772 ALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLR 831
AL + + E + +L+ + K + +L +S+++
Sbjct: 226 ALMVDAKCYEAFDQLVSNHLLTADEE-WDLVLKLNYSTYSKEDAAFL-------RSLYML 277
Query: 832 AAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANP 891
+ E L ++ KS L L A + ++ I + + +P
Sbjct: 278 KLNKTSHEDELRRAEDYL-SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP 336
Query: 892 NSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYE 951
+ +++ + E+ E + + +P WLA N+
Sbjct: 337 YNLDVYPLHLASLHESGEKNKLYLISNDL------VDRHPEKAVTWLAVGIYYLCVNKIS 390
Query: 952 RARRLLAKARASAPTPRVMIQSAKLE-WC--------LDNLERALQLLDEAIKVFPDFAK 1002
ARR +K+ + W ++A+ A ++F
Sbjct: 391 EARRYFSKS--------STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL 442
Query: 1003 LWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEK-- 1060
++ G Q + A++ + + L L + + + A + +
Sbjct: 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNAL 502
Query: 1061 -----GRLRNPNCAELW 1072
+ A W
Sbjct: 503 LLVKKTQSNEKPWAATW 519
Score = 66.0 bits (161), Expect = 5e-11
Identities = 72/527 (13%), Positives = 155/527 (29%), Gaps = 59/527 (11%)
Query: 540 KGCEENQTSEDLWLEAARL-QPVDTARAV-IAQAVRHIPTSVRIWIKAADLETETKAKRR 597
K + D + A D ARA + S AA K
Sbjct: 109 KVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA----FCLVKLY 164
Query: 598 VYRKALEHIPNSVRLWKAAVELEDPEDARILLSRAVECCPTSVELWL----ALARLETYE 653
++ AL + + +D ++A LL + + + L ++
Sbjct: 165 DWQGALNLL------GETNPFRKDEKNANKLLMQDGGIKLEA-SMCYLRGQVYTNLSNFD 217
Query: 654 NARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWF 713
A++ +A + + + D ++ S+ S R +
Sbjct: 218 RAKECYKEALMVDAKCYEAFDQLVSNH-LLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276
Query: 714 KEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQAL 773
+ + + + + +I G E + A++ + + AI + L
Sbjct: 277 LKLNKTSHEDELRRAEDYLSSING----LEKSSDLLLCKADTLFVRSRFIDVLAITTKIL 332
Query: 774 ATFPSKKSIWLR--AAYFEKNHGTRESLETLLQKAVAHCPKSEVLWL-MGAKSNKKSIWL 830
P ++ A+ E + L + V P+ V WL +G
Sbjct: 333 EIDPYNLDVYPLHLASLHESGE--KNKLYLISNDLVDRHPEKAVTWLAVGI--------- 381
Query: 831 RAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQAN 890
Y N E+ K+ P+ W+ A S + G+ A + A +
Sbjct: 382 --YYLCVNK-ISEARRYF-SKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437
Query: 891 PNSEEIW--LAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIW--LAAVKLESE 946
+ + L ++ N A L + + + L V
Sbjct: 438 QGTHLPYLFLGMQHMQLGN--ILLANEYLQSS------YALFQYDPLLLNELGVVAFNKS 489
Query: 947 NNE-----YERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF 1000
+ + ++ A L+ K +++ L + A+ L++ + + +
Sbjct: 490 DMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549
Query: 1001 AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLAN-LEE 1046
A + + K + A +++ P+ + +L LEE
Sbjct: 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
Score = 42.1 bits (99), Expect = 0.001
Identities = 32/319 (10%), Positives = 85/319 (26%), Gaps = 38/319 (11%)
Query: 922 AQAGAFQANPNSEEIWLAAVKLES-ENNEYERARRLLAKARASAPTPRVMIQSAKLEWCL 980
+ A + S E +L + ++ +Y+ A + K P A++ C
Sbjct: 71 KERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCT 130
Query: 981 DNLERALQLLDEAIKVFP----------------DFAKLWMMKGQIEEQKNLLDKAHDTF 1024
+ RA LL + D+ + G+ + A+
Sbjct: 131 GDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLL 190
Query: 1025 SQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGL 1084
Q + + + + +A+ ++ + + C E + + +
Sbjct: 191 MQDGGIKLEAS-MCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTAD 249
Query: 1085 KDIANTMMAKALQECPNAGILWAEAIF-----LEPRPQRKTKSVDALKKCEHDPH---VL 1136
++ ++ + +++ ++ D L +L
Sbjct: 250 EEWDL-VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLL 308
Query: 1137 LAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQK 1196
L + + ++ ++ L+ ++ V + K
Sbjct: 309 LCKADTLFVRSRFIDVLAITTK-----------ILEIDPYNLDVYPLHLASLHESGEKNK 357
Query: 1197 CREWFNRTVKIDPDLGDAW 1215
N V P+ W
Sbjct: 358 LYLISNDLVDRHPEKAVTW 376
Score = 38.7 bits (90), Expect = 0.012
Identities = 23/187 (12%), Positives = 56/187 (29%), Gaps = 20/187 (10%)
Query: 495 NDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQ----AARNLIMKGCEENQTSED 550
++ +A+ K + A+ +T + N E+
Sbjct: 214 SNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273
Query: 551 LWLEAARLQPVDTARAVIA---QAVRHIPTSVRIWIKAADLETE----TKAKRRVYRKAL 603
L++ + ++ + S + + AD + K L
Sbjct: 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLA-ITTKIL 332
Query: 604 EHIPNSVRLWK----AAVELEDPEDARILLSRAVECCPTSVELWLALA----RLETYENA 655
E P ++ ++ + E + ++ + V+ P WLA+ + A
Sbjct: 333 EIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEA 392
Query: 656 RKVLNKA 662
R+ +K+
Sbjct: 393 RRYFSKS 399
Score = 29.8 bits (67), Expect = 6.2
Identities = 18/163 (11%), Positives = 44/163 (26%), Gaps = 11/163 (6%)
Query: 1095 ALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKCEHDPH----VLLAVSKLFWCENKNQ 1150
+ PN A+ R + L K + LA L +
Sbjct: 112 DITGNPNDAFWLAQVYCCTGDYAR---AKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQG 168
Query: 1151 KCHRSGSRRCMGVKTKSVDALKKCEH----DPHVLLAVSKLFWCENKNQKCREWFNRTVK 1206
+ G K+ + L + + + +++ + + +E + +
Sbjct: 169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228
Query: 1207 IDPDLGDAWAYFYKFEIINGTEETQAEVKKRCLAAEPKHGENW 1249
+D +A+ ++ EE +K +
Sbjct: 229 VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR repeat,
ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A
3fp4_A 3lca_A
Length = 537
Score = 79.4 bits (196), Expect = 3e-15
Identities = 62/469 (13%), Positives = 138/469 (29%), Gaps = 58/469 (12%)
Query: 599 YRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELWL----ALARLE 650
Y+ A+E PN + + D E ++A+E P + L A L
Sbjct: 48 YQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLG 107
Query: 651 TYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKII----DRALSSLSANGVE 706
+ +A L+ N D + ++++ + R L +N
Sbjct: 108 NFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL 167
Query: 707 INREHWFKEAIEAEKAGSVH----TCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAY 762
+ F +E + L A+ ++ + + + Y
Sbjct: 168 ASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDE--GYLVANDLLTKSTDMY 225
Query: 763 ECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAK 822
+ + F + LLQ+++ P +
Sbjct: 226 HSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLAL- 284
Query: 823 SNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGI 882
+K + ++E + QKAV P+ + + ++ D A+
Sbjct: 285 ----------TLADKEN-SQEFFKFF-QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332
Query: 883 LSLAFQANPNSEEIW--LAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIW--L 938
A NP + + LA + + ++ + + P E+
Sbjct: 333 FQKAQSLNPENVYPYIQLACLL--YKQGKFTESEAFFNET------KLKFPTLPEVPTFF 384
Query: 939 AAVKLESENNE-----YERARRL----------LAKARASAPTPRVMIQSAKLEWCLDNL 983
A + + + + Y+ A+RL + A + +
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444
Query: 984 ERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032
A++LL +A ++ P + + Q++ Q +D+A + F +
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493
Score = 77.5 bits (191), Expect = 1e-14
Identities = 70/537 (13%), Positives = 148/537 (27%), Gaps = 86/537 (16%)
Query: 599 YRKALEHIPNSVRLW--------KAAVELEDPEDARILLSRAVECCPTSVELW----LAL 646
+ P+ + + ++ +A A+E P +
Sbjct: 10 IAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACY 69
Query: 647 ARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVE 706
E + KA E P + A E+ GN A+ LS +
Sbjct: 70 ISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN-------FTDAMFDLSV--LS 120
Query: 707 INREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECAR 766
+N + F A QA+ V E+ ++ + +
Sbjct: 121 LNGD--FDGASIEPMLERNLNKQAM-------KVLNENLSKDEGRGSQVLPSNTSLASFF 171
Query: 767 AIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKK 826
I+ L S AY LL A+ + +
Sbjct: 172 GIFDSHLEVSSVNTSSNYDTAY------------ALLSDALQRLY----------SATDE 209
Query: 827 SIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLA 886
+ K+ SL + + + +L ++ A+ +L +
Sbjct: 210 GYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269
Query: 887 FQANPNSEE-IWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIW--LAAVKL 943
+P I+LA + + + K A NP + +
Sbjct: 270 INLHPTPNSYIFLALTLA--DKENSQEFFKFFQK------AVDLNPEYPPTYYHRGQMYF 321
Query: 944 ESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAK 1002
++ Y+ A+ KA++ P IQ A L + + +E FP +
Sbjct: 322 ILQD--YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE 379
Query: 1003 LWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKML----IKARSVL 1058
+ +I + D A + A + + + + L + +L + + L
Sbjct: 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQL 439
Query: 1059 EKGRLR------------NPNCAELW--LAAIRVEIRAGLKDIANTMMAKALQECPN 1101
++ + +P + LA +++++ D A + +
Sbjct: 440 DEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQM--EKIDEAIELFEDSAILART 494
Score = 48.2 bits (115), Expect = 1e-05
Identities = 20/125 (16%), Positives = 40/125 (32%), Gaps = 4/125 (3%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
N A++ AI++ P+ + L+K + ++A++ P +
Sbjct: 38 AKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALL 97
Query: 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQEC 1099
A+ E A L L A+I + L A ++ + L +
Sbjct: 98 RRASANESLGNFTDAMFDLSVLSLNGDF----DGASIEPMLERNLNKQAMKVLNENLSKD 153
Query: 1100 PNAGI 1104
G
Sbjct: 154 EGRGS 158
Score = 42.0 bits (99), Expect = 0.001
Identities = 12/96 (12%), Positives = 29/96 (30%), Gaps = 4/96 (4%)
Query: 982 NLERALQLLDEAIKVFPD----FAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPL 1037
+ + + + P +A +G ++A + AI+ P+
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
Query: 1038 WIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWL 1073
+ ++ L K K P+ ++ L
Sbjct: 62 YSNISACYISTGDLEKVIEFTTKALEIKPDHSKALL 97
Score = 29.3 bits (66), Expect = 8.8
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 599 YRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELWLALARLETYEN 654
KA E P S + + +++E ++A L + T E A T+
Sbjct: 451 LTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT----TFAE 506
Query: 655 ARKVLNKAREN 665
A K+ + R +
Sbjct: 507 AAKIQKRLRAD 517
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 77.1 bits (190), Expect = 1e-14
Identities = 79/530 (14%), Positives = 173/530 (32%), Gaps = 75/530 (14%)
Query: 599 YRKALEHIPNSVRLW--KAAV--ELEDPEDARILLSRAVECCPTSVELW----LALARLE 650
Y ALE + V + +A + D + + ++A+E P ++ A L
Sbjct: 29 YNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG 87
Query: 651 TYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINRE 710
+ +A L+ N N+A ++ +++R L+ + +
Sbjct: 88 KFADAMFDLSVLSLNGDF----------------NDASIEPMLERNLNKQAMSK------ 125
Query: 711 HWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYA 770
KE + A + E+ + + I+
Sbjct: 126 --LKEKFGD-----------IDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172
Query: 771 QALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWL 830
L +S + KA K+ L+ N + L
Sbjct: 173 PELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232
Query: 831 RAAYFE--KNHGTRESLETLLQKAVAHC-------PKSEVLWLMGAKSKWLAGDVPAARG 881
+ ++ G + L+ A P+ M D
Sbjct: 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMAL-IMADRNDSTEYYN 291
Query: 882 ILSLAFQANPNSEEIW--LAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLA 939
A + + N+ ++ + +N Y++A + KA + +P + ++
Sbjct: 292 YFDKALKLDSNNSSVYYHRGQMNFILQN--YDQAGKDFDKA------KELDPENIFPYIQ 343
Query: 940 AVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFP 998
L N+++ L ++A+ P P V A++ ++ ++AL+ D AI++
Sbjct: 344 LACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403
Query: 999 DFAKLWMMKGQIEEQKNLL---------DKAHDTFSQAIKKCPHSVPLWIMLANLEERRK 1049
+++ + + LL +A + +A K P S I LA ++ +++
Sbjct: 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQE 463
Query: 1050 MLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDI-ANTMMAKALQE 1098
+ +A ++ E+ E A E + I ++ ++AK +QE
Sbjct: 464 DIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRIRSDPVLAKKIQE 513
Score = 44.7 bits (106), Expect = 2e-04
Identities = 30/260 (11%), Positives = 75/260 (28%), Gaps = 25/260 (9%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041
+ A++ + A+++ D + L K + ++A++ P + +
Sbjct: 21 KYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRR 79
Query: 1042 ANLEERRKMLIKARSVLEKGRLR-NPNCAELWLAAIRVEIRAGLKDI--ANTMMAKALQE 1098
A+ E A L L + N A + R + + + + A
Sbjct: 80 ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATAT 139
Query: 1099 CPNAGILWAEAIFLEPRPQRKTKSVDAL--------------KKCEHDPHVLLAVSKLFW 1144
A+ + S+ + + E D ++ +S L+
Sbjct: 140 PTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYK 199
Query: 1145 CENKNQKCHRSGSRRCMGVKTKSVDALKKC----EHDPHVLLAVSKLFWCENKNQKCREW 1200
++ + + + +D + E L + +N E
Sbjct: 200 RSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHED 259
Query: 1201 FNRTVKIDPDLGDAWAYFYK 1220
+ +++ P +Y Y
Sbjct: 260 IKKAIELFP---RVNSYIYM 276
Score = 29.7 bits (67), Expect = 7.6
Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 998 PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKA 1054
+A KG + D A ++ A++ V + L+ L K
Sbjct: 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKV 58
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 74.3 bits (182), Expect = 3e-13
Identities = 100/639 (15%), Positives = 187/639 (29%), Gaps = 225/639 (35%)
Query: 548 SEDLWLEAARLQPVDTARAVIAQAVRHI-----PTS-VRIWIK-----AADLE-TETKAK 595
+ A++LQ + ++ + PT+ + K ++ +E ++
Sbjct: 23 PTASFFIASQLQ--EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQF 80
Query: 596 RRVYRKALEHIPNSVRLWK-----AAVELEDPEDARILLSRAVECCPTSVELWLALARLE 650
+V L N L A +L D ++ ++ + ++
Sbjct: 81 DQVLNLCLTEFENCY-LEGNDIHALAAKLLQENDTTLVKTKEL---------------IK 124
Query: 651 TYENARKVLNKARENIPTDRQIWTTAAKLEEAH--------GNN---------------A 687
Y AR + + + A A GN
Sbjct: 125 NYITARIMAKRPFDKKSNSA--LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 688 MVDKIIDRA---LSSLSANGVEINREHWFKEAIEA----EKAGSVHTCQALIRA-----I 735
+V +I + LS L ++ + F + + E + L+ +
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEK--VFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 736 IG------YGV--EQEDRKHTWMEDAESCANQGAYECARAIY-AQALATFPSKKSIWLRA 786
IG Y V + + +GA ++ + A A+A S W
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYL----KGATGHSQGLVTAVAIAETDS----W--- 289
Query: 787 AYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNK----KSIW--LRAAYFEKNHG 840
ES ++KA+ VL+ +G + + S+ + E N G
Sbjct: 290 ----------ESFFVSVRKAI------TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 841 -----------TRESLETLLQKAVAHCPKSEVLWLM---GAKSKWLAGDVPAARGILSLA 886
T+E ++ + K +H P + + + GAK+ ++G
Sbjct: 334 VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG------------ 381
Query: 887 FQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQAN-PNSEEIWLAAVKLES 945
P S L + L L KA+A +G Q+ P SE KL+
Sbjct: 382 ---PPQS----LYGLNLT------------LRKAKAPSGLDQSRIPFSER------KLKF 416
Query: 946 ENNEYERARRLLAKARASAP---------TPRVM--IQSAKLEWCLDNLERALQLLDEAI 994
N R L ++P + + + + + A + I
Sbjct: 417 SN-------RFL---PVASPFHSHLLVPASDLINKDLVKNNVSF------NAKDI---QI 457
Query: 995 KVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPL-WIMLANLEERRKMLIK 1053
V+ + + L + S+ I C +P+ W K
Sbjct: 458 PVY-----------DTFDGSD-LRVLSGSISERIVDCIIRLPVKWETTTQF--------K 497
Query: 1054 ARSVLEKGRLRNPNCAELWLAA-----IRVEIRAGLKDI 1087
A +L+ G L +RV I AG DI
Sbjct: 498 ATHILDFGPGGASGLGVLTHRNKDGTGVRV-IVAGTLDI 535
Score = 68.9 bits (168), Expect = 9e-12
Identities = 70/412 (16%), Positives = 128/412 (31%), Gaps = 140/412 (33%)
Query: 467 SVVGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEE 526
++ + + + L + +I Y AR++ K R + A +
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNY-------ITARIMAK--RPFDKKSNSALFRAVG--- 150
Query: 527 VTGKVQAARNLIMKGCEENQ-TSEDLWLEAARLQPV-DTARAVIAQAVRHIPTSVRIWIK 584
G Q I G Q ++D + E L+ + T ++ ++ ++
Sbjct: 151 -EGNAQLV--AIFGG----QGNTDDYFEE---LRDLYQTYHVLVGDLIKFSAETL----- 195
Query: 585 AADLETETKAKRRVYRKALEHIPNSVRLWKAAVELEDPE---DARILLSRAVECCPTSVE 641
++L T +V+ + L + W LE+P D LLS P S
Sbjct: 196 -SELIRTTLDAEKVFTQGLN-----ILEW-----LENPSNTPDKDYLLS-----IPISCP 239
Query: 642 LWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLS 701
L + + +L Y K+L +T G + +
Sbjct: 240 L-IGVIQLAHYVVTAKLLG------------FT--------PGE--LRSYL--------- 267
Query: 702 ANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGA 761
K + H+ Q L+ A+ + + D +W E + A
Sbjct: 268 -------------------KGATGHS-QGLVTAVA---IAETD---SW-ESFFVSVRK-A 299
Query: 762 YECARAIYAQALATFPSKKSIW--LRAAYFEKNHG-----------TRESLETLLQKAVA 808
I + +P+ S+ + E N G T+E ++ + K +
Sbjct: 300 ITVLFFIGVRCYEAYPN-TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 809 HCPKSEVLWLMGAKSNKKSIWLRAAYFEKNH---GTRESLETL---LQKAVA 854
H P + + I L KN G +SL L L+KA A
Sbjct: 359 HLPAGKQV----------EISLVNGA--KNLVVSGPPQSLYGLNLTLRKAKA 398
Score = 61.2 bits (148), Expect = 2e-09
Identities = 85/574 (14%), Positives = 158/574 (27%), Gaps = 209/574 (36%)
Query: 404 DSVLRGNLGGESTGAIDPNSGLMSQIPGTATPGMLTPSGDLDLRKMGQARNTLMNVKLNQ 463
+ L GN D ++ L +++ L + +L ++ AR + ++
Sbjct: 93 NCYLEGN---------DIHA-LAAKLLQE-NDTTLVKTKEL-IKNYITAR-IMAKRPFDK 139
Query: 464 ISDSVV----------------GQTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSV 507
S+S + GQ D Y +L+ + TY + D L+K
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDD--YFEELRDLYQTYHVLVGD------LIKF- 190
Query: 508 RETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDL--WLEAARLQPVDTAR 565
++ L E+ A + +G ++ WLE P D
Sbjct: 191 ------------SAETLSELIRTTLDAEKVFTQGL-------NILEWLENPSNTP-DK-- 228
Query: 566 AVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVR--LWKAAVELEDPE 623
+ IP S + I L A V K L P +R L A +
Sbjct: 229 ----DYLLSIPISCPL-IGVIQL-----AHYVVTAKLLGFTPGELRSYLKGATGHSQG-- 276
Query: 624 DARILLSRAVECCPTSVELWLALARLETYENARKVLN-------KARENIPTDRQIWTTA 676
++ + A+ + W + + + RK + + E P + +
Sbjct: 277 ---LVTAVAIAETDS----WESF-----FVSVRKAITVLFFIGVRCYEAYPN-TSLPPSI 323
Query: 677 AKLEEAHGNNA---M----------VDKIIDRALSSLSANG-VEI---N-REHW------ 712
+ + M V +++ S L A VEI N ++
Sbjct: 324 LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPP 383
Query: 713 -----FKEAIEAEKAGSVHTCQALIRAIIGYGVEQ-----EDRK--------------HT 748
+ KA S G++Q +RK H+
Sbjct: 384 QSLYGLNLTLRKAKAPS--------------GLDQSRIPFSERKLKFSNRFLPVASPFHS 429
Query: 749 -WMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAY-FEKNHGTRESLETLLQKA 806
+ A N+ + + A+ + P Y R ++ ++
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQ-IP---------VYDTFDGSDLRVLSGSISERI 479
Query: 807 VAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNH------GTRESLETLLQKAVAHCPKSE 860
V ++ W F+ H G L L +
Sbjct: 480 VD--------CIIRLPVK----WETTTQFKATHILDFGPGGASGLGVLTHRNKD------ 521
Query: 861 VLWLMGAKSKWLAGDVPAARGILSLAFQANPNSE 894
G G R I++ NP+ +
Sbjct: 522 -----G------TG----VRVIVAGTLDINPDDD 540
Score = 55.8 bits (134), Expect = 9e-08
Identities = 56/323 (17%), Positives = 97/323 (30%), Gaps = 115/323 (35%)
Query: 759 QGAYEC--ARAIYAQALATFPSKKSIWLRA-AYFEKNHGTRESLETLLQKAVAHCPKSEV 815
QG+ E +Y T + + +W RA +F+ +G + V + P +
Sbjct: 1624 QGSQEQGMGMDLYK----TSKAAQDVWNRADNHFKDTYGFS------ILDIVINNPVNLT 1673
Query: 816 LWLMGAKSNKKSIWLRAAY----FEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKW 871
+ G K + +R Y FE + E + ++ H + +
Sbjct: 1674 IHFGGEKGKR----IRENYSAMIFETIVDGKLKTEKIFKEINEHS--TSYTF-------- 1719
Query: 872 LAGDVPAARGILSL-AF-Q-ANPNSEEIWL---AAVK-LESENN-------------EYE 911
+ +G+LS F Q A + L AA + L+S+ EY
Sbjct: 1720 -RSE----KGLLSATQFTQPA------LTLMEKAAFEDLKSKGLIPADATFAGHSLGEYA 1768
Query: 912 RARRLLAKARAQAGAFQANPNSEEIWLAAVKL-----ESENNEYERARRLLAKARASAPT 966
A LA + A S E + V++ + R + A
Sbjct: 1769 -A---LA---SLADVM-----SIE---SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 967 PRVMIQSAKLE--------------WCL----DNLE----------RALQLLDEAIKVF- 997
P + S E W + N+E RAL + +
Sbjct: 1814 PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIK 1873
Query: 998 ---PDFAKLWMMKGQIEEQKNLL 1017
D +L +EE + L
Sbjct: 1874 LQKIDIIEL-QKSLSLEEVEGHL 1895
Score = 45.4 bits (107), Expect = 1e-04
Identities = 41/280 (14%), Positives = 72/280 (25%), Gaps = 109/280 (38%)
Query: 301 FNGYGGSLFNKDPYDKDDEEADMIYEEIDKRMDEKRKDYREKRLREELERYRQERPKIQQ 360
F G G ++ Y MI+E I + K ++E + E Y K
Sbjct: 1676 FGGEKGKRIREN-YSA------MIFETIVDGKLKTEKIFKE--INEHSTSYTFRSEK--- 1723
Query: 361 QFSDLKR------GLVTVS------MDEWKNVPE--------VGDARNRKQRNPRAEKFT 400
L L + + +P +G E +
Sbjct: 1724 --GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG------------E-YA 1768
Query: 401 ---------PLPDSV----LRGNLGGESTGAIDPNSGLMSQIPGTA-TPGMLTPSGDLD- 445
+ V RG A+ + S A PG + S +
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQV---AVPRDELGRSNYGMIAINPGRVAASFSQEA 1825
Query: 446 LRKMGQARNTLMNVKLNQISDSVV--------GQTVVDPKGYLTDLQSMIPTYGGDINDI 497
L+ + + ++ + + +V Q V GD+ +
Sbjct: 1826 LQYVVE--------RVGKRTGWLVEIVNYNVENQQYV------------A---AGDLRAL 1862
Query: 498 KKARLLLKSVRETNPNHPPAWI------ASARLEEVTGKV 531
+L ++ I S LEEV G +
Sbjct: 1863 DTVTNVLNFIKLQK-------IDIIELQKSLSLEEVEGHL 1895
Score = 41.6 bits (97), Expect = 0.002
Identities = 32/186 (17%), Positives = 53/186 (28%), Gaps = 59/186 (31%)
Query: 132 FNGYGGSLFNKDPYDK----DDEEADMIYEEIDKRMDEKRKDYREKRLREELERYRQERP 187
F G G ++ Y + + E+I K ++E Y + + L
Sbjct: 1676 FGGEKGKRIREN-YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL-----SAT 1729
Query: 188 KIQQQFSDLKRGLVTVSM---DEWKNEGQVVGQAIPPPPIPLVNRNKKHFMGVPAPLG-Y 243
+ Q L + ++ K++G IP F G LG Y
Sbjct: 1730 QFTQ------PALTLMEKAAFEDLKSKG-----LIPAD---------ATFAG--HSLGEY 1767
Query: 244 -----VAGV-----------GRGATGFTTRSDIGPARDANDVSDDRHAA--PVKRKKKDE 285
+A V RG T + RD S+ A P +
Sbjct: 1768 AALASLADVMSIESLVEVVFYRGMT-----MQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 286 EEDDEE 291
+E +
Sbjct: 1823 QEALQY 1828
Score = 38.9 bits (90), Expect = 0.014
Identities = 58/328 (17%), Positives = 96/328 (29%), Gaps = 120/328 (36%)
Query: 428 QIPGTATPGMLTPSGDLDLRKMGQARNTLMNVKLNQISDSVVGQTVVDP-KGYLTDLQSM 486
Q G+ GM G +DL K S Q V + + D
Sbjct: 1624 Q--GSQEQGM----G-MDLYK-----------------TSKAAQDVWNRADNHFKD---- 1655
Query: 487 IPTYGGDINDIKKARLLLKSVRETNPN----HPPAWIASARLEE----------VTGKVQ 532
TYG I DI V NP H R+ E V GK++
Sbjct: 1656 --TYGFSILDI---------VIN-NPVNLTIHFGG-EKGKRIRENYSAMIFETIVDGKLK 1702
Query: 533 AARNLIMKGCEENQTSEDLWLEAARL------QPVDTARAVIAQAVRHIPTSVRIWIKAA 586
+ I K E+ TS E L QP A+ +
Sbjct: 1703 TEK--IFKEINEHSTSYTFRSEKGLLSATQFTQP-----ALTL-------MEKAAF---E 1745
Query: 587 DLETETKAKRRV---------YRKALEHIPNSVRLWKAAVEL----------EDPEDARI 627
DL+++ Y AL + + + + ++ VE+ P D
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEY-AALASLADVMSI-ESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 628 LLSRA-VECCPTSVELWLALARLETYENARKVLNKARE-------NIPTDRQIWTTAAKL 679
+ + P V + L+ +V + N+ ++Q AA
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYV--VERVGKRTGWLVEIVNYNVE-NQQY--VAA-- 1856
Query: 680 EEAHGNNAMVDKIIDRALSSLSANGVEI 707
G+ +D + + L+ + ++I
Sbjct: 1857 ----GDLRALDTVTN-VLNFIKLQKIDI 1879
Score = 36.6 bits (84), Expect = 0.080
Identities = 49/357 (13%), Positives = 106/357 (29%), Gaps = 134/357 (37%)
Query: 649 LETYEN---ARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLS---- 701
++ Y+ A+ V N+A D ++ +G + + I+ +L+
Sbjct: 1633 MDLYKTSKAAQDVWNRA------DNH-------FKDTYGFS--ILDIVINNPVNLTIHFG 1677
Query: 702 -ANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQG 760
G I RE++ E G + T I + + +T+ +
Sbjct: 1678 GEKGKRI-RENYSAMIFETIVDGKLKT-----EKIFK-EINEHSTSYTFRSEKG------ 1724
Query: 761 AYECARAIYAQ-ALATFPSKKSIW--LRAAYFEKN------HGTRESL-E-TLLQKAVAH 809
+ + Q AL K+ + L++ H SL E A+A
Sbjct: 1725 --LLSATQFTQPALTLM-E-KAAFEDLKSKGLIPADATFAGH----SLGEYA----ALAS 1772
Query: 810 CPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKS 869
++V+ S+E+L+ + V +
Sbjct: 1773 L--ADVM---------------------------SIESLV-EVVFY-------------- 1788
Query: 870 KWLAGDVPAARGILSLAFQANPNSEE----IWLAAVKLES--ENNEYERARRLLAKARAQ 923
RG+ A P E + A+ + E + ++ + +
Sbjct: 1789 ----------RGM--TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 924 AGAF-Q-ANPNSE--------EIWLAAVKLESENNEYERARRL-LAKARASAPTPRV 969
G + N N E + L A+ + + + +++ + + + S V
Sbjct: 1837 TGWLVEIVNYNVENQQYVAAGD--LRALDTVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 33.9 bits (77), Expect = 0.49
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 13/68 (19%)
Query: 5 GHKGYSEYSVSKL-------KTQLAYVV--GQTVVDPKGYLTDLQSMIPTYGGDIND-IK 54
+ + + S S L QL + GQ D Y +L+ + TY + D IK
Sbjct: 133 AKRPFDKKSNSALFRAVGEGNAQL-VAIFGGQGNTDD--YFEELRDLYQTYHVLVGDLIK 189
Query: 55 KARLLLKS 62
+ L
Sbjct: 190 FSAETLSE 197
Score = 31.9 bits (72), Expect = 1.7
Identities = 32/213 (15%), Positives = 61/213 (28%), Gaps = 90/213 (42%)
Query: 198 RGLVT---VSM-DEWKN-----------------EGQVVGQAIPPPPIP--LVNRNKKHF 234
+GLVT ++ D W++ +A P +P ++ + ++
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY---EAYPNTSLPPSILEDSLENN 331
Query: 235 MGVPAPLGYVAGVGRGA---------TGFTTRSDI--------------GPARD------ 265
GVP+P+ ++ + + + + GP +
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL 391
Query: 266 -----ANDVSDDRHAAPV-KRKKK------------------DEEEDDEEDLNDSNFDEF 301
D+ P +RK K + +DL +N F
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV-SF 450
Query: 302 NGYGGSLFNKDP-YDKDD-----EEADMIYEEI 328
N + + P YD D + I E I
Sbjct: 451 N--AKDI--QIPVYDTFDGSDLRVLSGSISERI 479
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.0 bits (178), Expect = 5e-13
Identities = 91/674 (13%), Positives = 179/674 (26%), Gaps = 205/674 (30%)
Query: 265 DANDVSDDRHAAPVKRKKKDE--EEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEEAD 322
D DV D + + +++ D D F + K +
Sbjct: 34 DCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 323 MIYEEIDKRMDEK---RKDYREKRLR-----EELERYRQERPKIQQQFSDLKRGLVTVSM 374
+ I + + Y E+R R + +Y R + + L++ L
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ---PYLKLRQAL----- 144
Query: 375 DEWKNVPEVGDARNRKQRNPRAEKFTPLPDSVLRGNLG-GESTGAIDP--NSGLMSQIPG 431
+ P + ++ G LG G++ A+D + + ++
Sbjct: 145 ----------------------LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 432 TA---TPGML-TPSGDLDLRKMGQARNTLMNVKLNQISDSVVG--QTVVDPKGYLTDLQS 485
+P L +M Q ++ SD + + L L
Sbjct: 183 KIFWLNLKNCNSPETVL---EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL- 238
Query: 486 MIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASA-----------RLEEVTGKVQAA 534
Y + L+L +V+ A +A R ++VT + AA
Sbjct: 239 KSKPY-------ENCLLVLLNVQN-------AKAWNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 535 R------NLIMKGCEENQT-----------SEDLWLEAARLQPVDTARAVIAQAVRHIPT 577
+ ++ +DL E P ++IA+++R
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--RLSIIAESIRDGLA 342
Query: 578 SVRIWIKAADLETETKAKRRVYRKALEHI-PNSVR--LWKAAVELEDPEDARILLSRAVE 634
+ W + +L + P R + +V P A I
Sbjct: 343 TWDNW-----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---PPSAHI------- 387
Query: 635 CCPTSV--ELWLALARLETYENARKVLNK-------AREN------IPTDRQIWTTAAKL 679
PT + +W + + V+NK ++ IP +
Sbjct: 388 --PTILLSLIWFDV----IKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLE 440
Query: 680 EEA--HGNNAMVDKIIDR--ALSSLSANGVEINRE--HWFKEAIEAEKAGSVHTCQALIR 733
E H I+D + ++ + +++ H
Sbjct: 441 NEYALH------RSIVDHYNIPKTFDSDDLIPPYLDQYFYS-----------H------- 476
Query: 734 AIIGY---GVEQEDRKHT---------WMEDAESCANQGAYECARAIYAQALATFPSKKS 781
IG+ +E +R ++E + + A L K
Sbjct: 477 --IGHHLKNIEHPERMTLFRMVFLDFRFLE--QKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 782 IWLRAAYFEKNHGTRE----SLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEK 837
Y N E ++ L K + S+ L LR A +
Sbjct: 533 ------YICDNDPKYERLVNAILDFLPKIEENLICSKYTDL-----------LRIALMAE 575
Query: 838 NHGTRESLETLLQK 851
+ E +Q+
Sbjct: 576 DEAIFEEAHKQVQR 589
Score = 72.6 bits (177), Expect = 6e-13
Identities = 93/686 (13%), Positives = 192/686 (27%), Gaps = 208/686 (30%)
Query: 312 DPYDKDDEEADMIY-EEIDKRMDEKRKDYREKRLREELERYRQERPKIQQQFSD------ 364
D D D ++ EEID + K RL L ++E + Q+F +
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE---MVQKFVEEVLRIN 90
Query: 365 ---LKRGLVTVSMDEWKNVPEVGDARNRKQRN---------PRAEKFT----------PL 402
L + T + R+R + R + + P
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPA 150
Query: 403 PDSVLRGNLG-GESTGAIDP--NSGLMSQIPGTA---TPGML-TPSGDLDLRKMGQARNT 455
+ ++ G LG G++ A+D + + ++ +P L +M Q
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL---EMLQKLLY 207
Query: 456 LMNVKLNQISDSVVG--QTVVDPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPN 513
++ SD + + L L Y + L+L +V+
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLL-KSKPY-------ENCLLVLLNVQN---- 255
Query: 514 HPPAWIASA-----------RLEEVTGKVQAAR------NLIMKGCEENQT--------- 547
A +A R ++VT + AA + ++
Sbjct: 256 ---AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 548 --SEDLWLEAARLQPVDTARAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEH 605
+DL E P ++IA+++R + W + +L
Sbjct: 313 CRPQDLPREVLTTNPR--RLSIIAESIRDGLATWDNW-----KHVNCDKLTTIIESSLNV 365
Query: 606 I-PNSVR--LWKAAVELEDPEDARILLSRAVECCPTSV--ELWLALARLETYENARKVLN 660
+ P R + +V P A I PT + +W + + V+N
Sbjct: 366 LEPAEYRKMFDRLSVF---PPSAHI---------PTILLSLIWFDV----IKSDVMVVVN 409
Query: 661 KARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAE 720
K ++V+K S++S + + + ++ E
Sbjct: 410 KLH---------------------KYSLVEK--QPKESTISIPSI------YLELKVKLE 440
Query: 721 KAGSVHTCQALIRAIIG-YGVEQEDRKHTWMEDAES--CANQGAYECARAIYAQALATFP 777
++H R+I+ Y + + + + + + + + F
Sbjct: 441 NEYALH------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 778 SKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEK 837
++L + E+ + + A +L + K Y
Sbjct: 495 M---VFLDFRFLEQ---------KIRHDSTAWNASGSILNTLQQLKFYKP------YICD 536
Query: 838 NHGTRE----SLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNS 893
N E ++ L K + S+ +L +A +
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSK------------------YTDLLRIALM-AED- 576
Query: 894 EEIWLAAVKLESENNEYERARRLLAK 919
E I +E A + + +
Sbjct: 577 EAI-------------FEEAHKQVQR 589
Score = 68.7 bits (167), Expect = 9e-12
Identities = 70/487 (14%), Positives = 138/487 (28%), Gaps = 160/487 (32%)
Query: 836 EKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEE 895
E + ++ L V + +V D+P + ILS EE
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQ------------DMP--KSILS--------KEE 50
Query: 896 IWLAAVKLESENNEYERARRL----LAKARAQAGAF---QANPNSEEIWLAAVKLESENN 948
I + + RL L+K F N + +L + +++E
Sbjct: 51 I----DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK--FLMS-PIKTEQR 103
Query: 949 E--------------------------------YERARRLLAKARASAPTPRV----MIQ 972
+ Y + R+ L + R P V ++
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR---PAKNVLIDGVLG 160
Query: 973 SAKLEWCLDNLERALQ-LLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKK- 1030
S K + AL L ++ DF W+ + +L+ Q
Sbjct: 161 SGK--TWV-----ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 1031 ---CPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNC---------AELWLA-AIR 1077
HS + + + +++ + L+K++ NC A+ W A +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSK--------PYENCLLVLLNVQNAKAWNAFNLS 265
Query: 1078 VEI----RAGLKDIANTMMAKALQECPNAGILW------AEAIF---LEPRPQRKTKSVD 1124
+I R K + + + A +++ L+ RPQ
Sbjct: 266 CKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD------ 317
Query: 1125 ALKK--CEHDPHVLLAVSKLFWCENKNQKCHRSGSRR--CMGVKT---KSVDALKKCEHD 1177
L + +P +S + ++ + C + T S++ L+ E+
Sbjct: 318 -LPREVLTTNP---RRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 1178 PH-VLLAVSKLFWCENKNQKCREWFNRTVKIDPD-LGDAWAYFYKFEIINGTEETQAEVK 1235
L+V F + I L W K ++ ++
Sbjct: 373 KMFDRLSV----------------FPPSAHIPTILLSLIWFDVIKSDV----MVVVNKLH 412
Query: 1236 KRCLAAE 1242
K L +
Sbjct: 413 KYSLVEK 419
Score = 60.3 bits (145), Expect = 4e-09
Identities = 50/355 (14%), Positives = 105/355 (29%), Gaps = 106/355 (29%)
Query: 967 PRVMIQSAKLEWCL---DNLERALQLLD-------EAIKVF------PDFAKLWMMKGQI 1010
P+ ++ +++ + D + L+L E ++ F ++ ++M I
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK--FLMS-PI 98
Query: 1011 EEQKNLLDKAHDTFSQAIKKC--------PHSVPLWIMLANLEERRKMLIKARSVLEKGR 1062
+ ++ + + + ++V R + +K R L + R
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS----------RLQPYLKLRQALLELR 148
Query: 1063 LRNPN--------CAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEP 1114
N + W+A +Q + I W
Sbjct: 149 -PAKNVLIDGVLGSGKTWVAL------DVCLS-------YKVQCKMDFKIFWLN------ 188
Query: 1115 RPQRKTKSVDALKKCEHDPHVLLAVSKLFWCENKN--QKCHRSGS--RRCMGVKTKSVDA 1170
LK C VL + KL + + N + S + R ++ +
Sbjct: 189 -----------LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 1171 LKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKI-----DPDLGDAWAYFYKFEIIN 1225
LK + + LL + + N K FN + KI + D ++
Sbjct: 238 LKSKPY-ENCLLVLLNV-Q----NAKAWNAFNLSCKILLTTRFKQVTDF---------LS 282
Query: 1226 GTEETQAEVKKRCLAAEPKHGENWCRVAKNVSNWKLPRET------ILSLVAKDL 1274
T + + P ++ + LPRE LS++A+ +
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Score = 44.1 bits (103), Expect = 3e-04
Identities = 96/675 (14%), Positives = 180/675 (26%), Gaps = 207/675 (30%)
Query: 96 DANDVSDDRHAAPVKRKKKDE--EEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEEAD 153
D DV D + + +++ D D F + K +
Sbjct: 34 DCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92
Query: 154 MIYEEIDKRMDEK---RKDYREKRLR-----EELERYRQERPKIQQQFSDLKRGLVTVSM 205
+ I + + Y E+R R + +Y R + + L++ L+ +
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ---PYLKLRQALLELR- 148
Query: 206 DEWKNEGQVVGQAIPPPPIPLVNRNKKHFMGVPAPLGYVAGVGRGATGFTTRSDIGPARD 265
+ ++ + G G+ T
Sbjct: 149 ---PAKNVLI-----------------DGVL---------GSGK-----TWV-------- 166
Query: 266 ANDVSDDRHAAPVKRK-----------KKDEEEDDEEDLNDSNFDEFNGYGGSLFNKDPY 314
A DV V+ K + E E L L +
Sbjct: 167 ALDVCLSY---KVQCKMDFKIFWLNLKNCNSPETVLEMLQK------------LLYQ--I 209
Query: 315 DKDDEEADMIYEEIDKRMDEKRKDYREKRLREELERYRQ--------ERPKIQQQFSDLK 366
D + I R+ + +RL + + Y + K F +L
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKS-KPYENCLLVLLNVQNAKAWNAF-NLS 265
Query: 367 -RGLVTVSMDEWKNVPEVGDARNRKQR--NPRAEKFTP-----------------LPDSV 406
+ L+T + K V + A + + TP LP V
Sbjct: 266 CKILLT-TRF--KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322
Query: 407 LRGNLGGESTGAIDPNSGLMSQIPGTATPGMLTPSG--DLDLRKMGQARNTLMNVKLNQI 464
L N P +S I + G+ T ++ K+ T++ LN +
Sbjct: 323 LTTN----------PR--RLSIIAESIRDGLATWDNWKHVNCDKL----TTIIESSLNVL 366
Query: 465 SDSVVGQTVVDPKGYLTDLQSMIPTYGGDINDIKKARL-LLKSVRETNPNHPPAWIASAR 523
+ + + L S+ P + I L L+ W +
Sbjct: 367 EPA-------EYRKMFDRL-SVFPP---SAH-IPTILLSLI-------------WFDVIK 401
Query: 524 --LEEVTGKVQAARNLIMKGCEENQTS-EDLWLEAARLQPVDTA--RAVIAQAVRHIPTS 578
+ V K+ +L+ K +E+ S ++LE + A R+++ +IP
Sbjct: 402 SDVMVVVNKLH-KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH--YNIP-- 456
Query: 579 VRIWIKAADLETETKAKRRVYRKALEHIPNSVRLWKAAVELEDPE-----------DARI 627
K D + Y HI + L + +I
Sbjct: 457 -----KTFDSDDLIPPYLDQY--FYSHIGH--HLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 628 LLSRAVECCPTSVELWLA-LARLETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNN 686
S+ L L +L+ Y+ +N P ++ N
Sbjct: 508 RHDSTAWNASGSI---LNTLQQLKFYK------PYICDNDPKYERLVNAILDFLPKIEEN 558
Query: 687 AMVDK---IIDRALS 698
+ K ++ AL
Sbjct: 559 LICSKYTDLLRIALM 573
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum,
protein folding, tetratricopeptiderepeat, J domain,
unfolded protein respons; 3.00A {Homo sapiens} PDB:
2y4u_A
Length = 450
Score = 69.7 bits (171), Expect = 2e-12
Identities = 45/336 (13%), Positives = 98/336 (29%), Gaps = 14/336 (4%)
Query: 753 AESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPK 812
A G + A + + + L+ + G + E +K + P
Sbjct: 67 ATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Query: 813 SEVLWLMGA---KSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKS 869
+ KS++ A G + L K + C L + A+
Sbjct: 127 ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186
Query: 870 KWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKAR------AQ 923
G+ A L A + ++ E + L + ++E + + + +
Sbjct: 187 FIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 246
Query: 924 AGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWC---- 979
A + + + + Y A + P+ +K C
Sbjct: 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS 306
Query: 980 -LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLW 1038
+ A+++ E +++ PD + + + + D+A + A + + +
Sbjct: 307 KDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIR 366
Query: 1039 IMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLA 1074
L + K K G RN E+ A
Sbjct: 367 EGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA 402
Score = 66.2 bits (162), Expect = 3e-11
Identities = 35/271 (12%), Positives = 80/271 (29%), Gaps = 36/271 (13%)
Query: 851 KAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEY 910
AV P + + + A G AA L+ Q + L L + +
Sbjct: 51 AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKL 110
Query: 911 ERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVM 970
+ A K ++NP+ E A +L + + L
Sbjct: 111 DEAEDDFKKVL------KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFG--------- 155
Query: 971 IQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKK 1030
+ A+ LD+ ++V A+L ++ + ++ KA A K
Sbjct: 156 ---------SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL 206
Query: 1031 CPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANT 1090
+ + ++ L + + S + + + + + +V+ L + A
Sbjct: 207 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE 266
Query: 1091 MMA------------KALQECPNAGILWAEA 1109
++ ++ P+ +
Sbjct: 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRS 297
Score = 57.0 bits (138), Expect = 2e-08
Identities = 50/448 (11%), Positives = 120/448 (26%), Gaps = 68/448 (15%)
Query: 599 YRKALEHIPNSVRLW--KAAV--ELEDPEDARILLSRAVECCPTSVELWL----ALARLE 650
+ A++ P++ + +A V + + A L++ ++ L L +
Sbjct: 49 FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG 108
Query: 651 TYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINRE 710
+ A K ++ P++ + ++L ++ +
Sbjct: 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSD------------------------EMQ 144
Query: 711 HWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYA 770
+A+ A +G A + I+ V + AE +G A +
Sbjct: 145 RLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAE---LRELRAECFIKEGEPRKAISDLK 201
Query: 771 QALATFPSKKSIWLR--AAYFEKNHGTRESLETLLQKAVAHCPKSEVLW--LMGAKSNKK 826
A + + Y++ SL + ++ + + + K K
Sbjct: 202 AASKLKNDNTEAFYKISTLYYQLGD-HELSLSEV-RECLKLDQDHKRCFAHYKQVKKLNK 259
Query: 827 SIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMG----AKSKWLAGDVPAARGI 882
I ++ + + P + A +
Sbjct: 260 LIESAEELIRDGR-YTDATS-KYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317
Query: 883 LSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVK 942
S Q P++ + Y+ A + A + N N ++I K
Sbjct: 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETA------QEHNENDQQIREGLEK 371
Query: 943 LESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAK 1002
+ + ++ K E A++ PD +
Sbjct: 372 AQRLLKQSQKR--DYYKILGVKRNA-------------KKQEIIKAYRKLALQWHPDNFQ 416
Query: 1003 LWMMKGQIEEQKNLLDKAHDTFSQAIKK 1030
K + E++ + A + S +
Sbjct: 417 NEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Score = 55.1 bits (133), Expect = 9e-08
Identities = 54/390 (13%), Positives = 118/390 (30%), Gaps = 56/390 (14%)
Query: 511 NPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARLQPVDTARAVIAQ 570
+ A + L GK+ A + K + N + + ++L D + + +Q
Sbjct: 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149
Query: 571 AVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLW----KAAVELEDPEDAR 626
A + A T A K LE L + ++ +P A
Sbjct: 150 A-----------LNAFGSGDYTAA-IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 197
Query: 627 ILLSRAVECCPTSVELW----LALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEA 682
L A + + E + +L +E + + + + ++ +
Sbjct: 198 SDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA-------H 250
Query: 683 HGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEA-EKAGSVHTCQALIRAIIGYGVE 741
+ ++K+I+ A + + +A E A +
Sbjct: 251 YKQVKKLNKLIESAEELIRDGR--------YTDATSKYESVMKTEPSIAEYTVRSKERI- 301
Query: 742 QEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWL-RAAYFEKNHGTRESLE 800
+ A + ++ L P + RA + E+++
Sbjct: 302 -----------CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 350
Query: 801 TLLQKAVAHCPKSEVLW--LMGAKSNKKSIWLRAAYF----EKNHGTRESLETLLQKAVA 854
+ A H + + L A+ K R Y ++N +E ++ + A+
Sbjct: 351 D-YETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ 409
Query: 855 HCPKSEVLWLMGAKSKWLAGDVPAARGILS 884
P + K++ D+ AA+ +LS
Sbjct: 410 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLS 439
Score = 47.8 bits (114), Expect = 2e-05
Identities = 40/338 (11%), Positives = 95/338 (28%), Gaps = 72/338 (21%)
Query: 982 NLERALQLLDEAIKVFPDFAKLW-------MMKGQIEE---------------------- 1012
L AL A+ PD + + G+ +
Sbjct: 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100
Query: 1013 -----QKNLLDKAHDTFSQAIKKCPHSVPLWIMLANL---EERRKMLIKARSVLEKGRLR 1064
++ LD+A D F + +K P + L +E +++ +A + G
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160
Query: 1065 ------------NPNCAELWLAAIRVEIRAGLKDI--ANTMMAKALQECPNAGILW---A 1107
AEL R E + A + + A + + + +
Sbjct: 161 AAIAFLDKILEVCVWDAELREL--RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 218
Query: 1108 EAIFLEPRPQRKTKSVDALKKC-EHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTK 1166
+ + S+ +++C + D + + N+ + G T
Sbjct: 219 TLYYQLGDHE---LSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 275
Query: 1167 SVDALKKC-EHDPHVLLAVSKL-------FWCENKNQKCREWFNRTVKIDPDLGDAWAYF 1218
+ + + +P + + F + K + + ++++PD + A
Sbjct: 276 ATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD--NVNALK 333
Query: 1219 YKFEIINGTEETQAEVK--KRCLAAEPKHGENWCRVAK 1254
+ E E ++ + + + K
Sbjct: 334 DRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371
Score = 47.0 bits (112), Expect = 3e-05
Identities = 35/238 (14%), Positives = 80/238 (33%), Gaps = 29/238 (12%)
Query: 493 DINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLW 552
+ +KA LK+ + ++ A+ + L G + + + + + + +Q + +
Sbjct: 189 KEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCF 248
Query: 553 LEAARLQPVDTARAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRL 612
+++ ++ S I+ T Y ++ P+
Sbjct: 249 AHYKQVKKLNKLI-----------ESAEELIRDGRYTDATSK----YESVMKTEPSIAEY 293
Query: 613 W--------KAAVELEDPEDARILLSRAVECCPTSVELWL----ALARLETYENARKVLN 660
+ E P +A + S ++ P +V A E Y+ A +
Sbjct: 294 TVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353
Query: 661 KARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIE 718
A+E+ D+QI K + + D + +A EI + + K A++
Sbjct: 354 TAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV-KRNAKKQEIIKAY-RKLALQ 409
Score = 45.4 bits (108), Expect = 1e-04
Identities = 56/358 (15%), Positives = 107/358 (29%), Gaps = 66/358 (18%)
Query: 556 ARLQPVDTARAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLWKA 615
+ +D A + ++ P+ + L + +R +
Sbjct: 105 LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ------------ALN 152
Query: 616 AVELEDPEDARILLSRAVECCPTSVELWL----ALARLETYENARKVLNKARENIPTDRQ 671
A D A L + +E C EL + A L A + + +
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212
Query: 672 IWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQAL 731
+ + L G++ + + L +++++H K K + L
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRECL--------KLDQDH--KRCFAHYK-----QVKKL 257
Query: 732 IRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRA----- 786
+ I E AE G Y A + Y + T PS +R+
Sbjct: 258 NKLI---------------ESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERIC 302
Query: 787 -AYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESL 845
+ + +A+ C SEVL + N ++ RA + E++
Sbjct: 303 HCFSKDEK---------PVEAIRVC--SEVLQME--PDNVNALKDRAEAYLIEEMYDEAI 349
Query: 846 ETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKL 903
+ + A H + + K++ L L + N +EI A KL
Sbjct: 350 QD-YETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 66.5 bits (163), Expect = 1e-11
Identities = 51/306 (16%), Positives = 82/306 (26%), Gaps = 37/306 (12%)
Query: 753 AESCANQGAYECARAIYAQALATFPSKKSIW--LRAAYFEKNHGTRESLETLLQKAVAHC 810
AE ++ + + + P S E N L L K V
Sbjct: 29 AERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNK--ANELFYLSHKLVDLY 86
Query: 811 PKSEVLWL-MGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKS 869
P + V W +G Y H + L KA W+ S
Sbjct: 87 PSNPVSWFAVGC-----------YYLMVGHKNEHARRYL-SKATTLEKTYGPAWIAYGHS 134
Query: 870 KWLAGDVPAARGILSLAFQANPNSEEIW--LAAVKLESENNEYERARRLLAKARAQAGAF 927
+ + A A Q + + N + A R ++A
Sbjct: 135 FAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNN--SKLAERFFSQA------L 186
Query: 928 QANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNL---- 983
P + + +N E++ A + A + K E L+NL
Sbjct: 187 SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246
Query: 984 ------ERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPL 1037
AL +A+ + P A + G I + A D F A+
Sbjct: 247 RKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306
Query: 1038 WIMLAN 1043
ML +
Sbjct: 307 VTMLGH 312
Score = 66.2 bits (162), Expect = 2e-11
Identities = 33/228 (14%), Positives = 68/228 (29%), Gaps = 24/228 (10%)
Query: 843 ESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVK 902
+ ET++ ++V ++ + + A+ + D + S+ + +P +
Sbjct: 5 KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64
Query: 903 LESENNEYERARRLLAKARAQAGAFQANPNSEEIWLA-AVKLESENNEYERARRLLAKAR 961
E N+ L K P++ W A ++ E ARR L+KA
Sbjct: 65 TLVELNKANELFYLSHKL------VDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKA- 117
Query: 962 ASAPTPRVMIQSAKLE-WC--------LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEE 1012
++ W ++A+ A ++ + G
Sbjct: 118 -------TTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170
Query: 1013 QKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEK 1060
N A FSQA+ P + + + + A
Sbjct: 171 LTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD 218
Score = 58.8 bits (143), Expect = 4e-09
Identities = 31/300 (10%), Positives = 80/300 (26%), Gaps = 16/300 (5%)
Query: 926 AFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLE 984
+ + ++ ++ + N +++ +L + P + L+
Sbjct: 14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN 73
Query: 985 RALQLLDEAIKVFPDFAKLWMMKGQI-EEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLAN 1043
L + + ++P W G + + A S+A P WI +
Sbjct: 74 ELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGH 133
Query: 1044 LEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAG 1103
+A + C L +A ++AL P
Sbjct: 134 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193
Query: 1104 ILWAE-AIFLEPRPQRKTKSVDALKK-CEHDPHVLLAVSKLFWCENKNQKCHRSGSRRCM 1161
+ E + + + E + V+ W N H R +
Sbjct: 194 FVMHEVGVVAF-QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH---VCRKL 249
Query: 1162 GVKTKSVDALKKC------EHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAW 1215
+++D ++ + + + + ++F+ + + D +
Sbjct: 250 KKYAEALDYHRQALVLIPQNASTYSAIG--YIHSLMGNFENAVDYFHTALGLRRDDTFSV 307
Score = 57.3 bits (139), Expect = 1e-08
Identities = 37/248 (14%), Positives = 73/248 (29%), Gaps = 33/248 (13%)
Query: 846 ETLLQKAVAHCPKS-EVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLA-AVKL 903
L + P L + + + P++ W A
Sbjct: 42 YKLTSVVMEKDPFHASCLPVHIG-TLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYY 100
Query: 904 ESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAS 963
++ E ARR L+KA W+A + +E+++A + A A+
Sbjct: 101 LMVGHKNEHARRYLSKA------TTLEKTYGPAWIAYGHSFAVESEHDQA--MAAYFTAA 152
Query: 964 APTPRV--------MIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKN 1015
+ +N + A + +A+ + P+ + G + Q
Sbjct: 153 QLMKGCHLPMLYIGLEYGL-----TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207
Query: 1016 LLDKAHDTFSQAIKKCPHS---------VPLWIMLANLEERRKMLIKARSVLEKGRLRNP 1066
A F A++K PL L ++ + K +A + + P
Sbjct: 208 EWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP 267
Query: 1067 NCAELWLA 1074
A + A
Sbjct: 268 QNASTYSA 275
Score = 56.1 bits (136), Expect = 3e-08
Identities = 46/328 (14%), Positives = 89/328 (27%), Gaps = 36/328 (10%)
Query: 760 GAYECARAI-YAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKS-EVLW 817
G+Y +++ + + A + + L + P L
Sbjct: 1 GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLP 60
Query: 818 LMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWL-MGAKSKWLAGDV 876
+ E N L L K V P + V W +G +
Sbjct: 61 VHIG-----------TLVELNK--ANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKN 107
Query: 877 PAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEI 936
AR LS A W+A + +E+++A A Q
Sbjct: 108 EHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTA------AQLMKGCHLP 161
Query: 937 W--LAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEA 993
+ + N + A R ++A + AP P VM + + + + A + +A
Sbjct: 162 MLYIGLEYGLTNN--SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219
Query: 994 IKVF---------PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANL 1044
++ + L G + + +A D QA+ P + + + +
Sbjct: 220 LEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYI 279
Query: 1045 EERRKMLIKARSVLEKGRLRNPNCAELW 1072
A +
Sbjct: 280 HSLMGNFENAVDYFHTALGLRRDDTFSV 307
Score = 46.5 bits (111), Expect = 3e-05
Identities = 14/127 (11%), Positives = 33/127 (25%), Gaps = 1/127 (0%)
Query: 949 EYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKG 1008
+ V++ A+ + + + +L ++ P A +
Sbjct: 4 NKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHI 63
Query: 1009 QIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLAN-LEERRKMLIKARSVLEKGRLRNPN 1067
+ N ++ + + P + W + AR L K
Sbjct: 64 GTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT 123
Query: 1068 CAELWLA 1074
W+A
Sbjct: 124 YGPAWIA 130
Score = 45.0 bits (107), Expect = 1e-04
Identities = 34/210 (16%), Positives = 54/210 (25%), Gaps = 19/210 (9%)
Query: 493 DINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLW 552
D K L V E +P H K L K + ++ W
Sbjct: 34 YNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSW 93
Query: 553 LEAARL-----QPVDTARAVIAQAVRHIPTSVRIWIKA----ADLETETKAKRRVYRKAL 603
+ AR +++A T WI A +A Y A
Sbjct: 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMA-AYFTAA 152
Query: 604 EHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELW----LALARLETYENA 655
+ + + + A S+A+ P + + + ++ A
Sbjct: 153 QLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTA 212
Query: 656 RKVLNKARENIPTDRQIWTTAAKLEEAHGN 685
K A E I T K E N
Sbjct: 213 EKWFLDALEKIKAIGNE-VTVDKWEPLLNN 241
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 66.4 bits (162), Expect = 4e-11
Identities = 21/199 (10%), Positives = 50/199 (25%), Gaps = 20/199 (10%)
Query: 949 EYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMK 1007
+ R L A P + A E + + + + + P +
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 1008 GQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPN 1067
G++ + +A QA P + + L + E A + + P
Sbjct: 64 GRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123
Query: 1068 CAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVD--A 1125
+ + + + L + + + +V+ A
Sbjct: 124 EPYIT-----------------AQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFA 166
Query: 1126 LKKCEHDPHVLLAVSKLFW 1144
+ LA ++
Sbjct: 167 FLSEDASAAEQLACARTRA 185
Score = 58.7 bits (142), Expect = 8e-09
Identities = 28/185 (15%), Positives = 53/185 (28%), Gaps = 13/185 (7%)
Query: 872 LAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANP 931
+ D P L A + P WL E + + + A +P
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA------LHP 54
Query: 932 NSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLL 990
E ++ + A LL +A +AP P + + E A
Sbjct: 55 GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAY 114
Query: 991 DEAIKVFPDFAKLWMMKG---QIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLA---NL 1044
A ++ P+ + + LD A+ + +V + L+ +
Sbjct: 115 TRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASA 174
Query: 1045 EERRK 1049
E+
Sbjct: 175 AEQLA 179
Score = 43.7 bits (103), Expect = 4e-04
Identities = 25/158 (15%), Positives = 40/158 (25%), Gaps = 31/158 (19%)
Query: 496 DIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEA 555
D + L L++ P AW+ A E G A E
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAG--------------EMAVQRG 49
Query: 556 ARLQPVDTARAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLW-- 613
L P +AV + R+ ++A + P +
Sbjct: 50 LALHPGH------PEAVARL---GRVRWTQQRHAEAAVL----LQQASDAAPEHPGIALW 96
Query: 614 --KAAVELEDPEDARILLSRAVECCPTSVELWLALARL 649
A + E A +RA + P + L
Sbjct: 97 LGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNW 134
Score = 41.0 bits (96), Expect = 0.003
Identities = 41/219 (18%), Positives = 60/219 (27%), Gaps = 29/219 (13%)
Query: 759 QGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWL 818
A+ P WL A E G + E +Q+ +A P
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH----- 56
Query: 819 MGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPA 878
R LLQ+A P+ + L + AG A
Sbjct: 57 -------PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEA 109
Query: 879 ARGILSLAFQANPNSEEIW--LAAVKLESENNEY--ERARRLLAKARAQAG-----AFQA 929
A + A Q P I L + + + ++ A G AF +
Sbjct: 110 AAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169
Query: 930 NPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPR 968
S LA + RA+ + A R APT
Sbjct: 170 EDASAAEQLACAR--------TRAQAIAASVRPLAPTRV 200
Score = 39.8 bits (93), Expect = 0.006
Identities = 21/125 (16%), Positives = 39/125 (31%), Gaps = 16/125 (12%)
Query: 597 RVYRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELWLALARLET- 651
R A+ H P W A + + D + + R + P E L R+
Sbjct: 10 LQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT 69
Query: 652 ---YENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEIN 708
+ A +L +A + P I E G + A ++ + ++
Sbjct: 70 QQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQ-------AEAAAAAYTR-AHQLL 121
Query: 709 REHWF 713
E +
Sbjct: 122 PEEPY 126
Score = 33.7 bits (77), Expect = 0.48
Identities = 17/111 (15%), Positives = 28/111 (25%), Gaps = 12/111 (10%)
Query: 753 AESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPK 812
A++ G + LA P R LLQ+A P+
Sbjct: 30 ADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE 89
Query: 813 SEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLW 863
+ L WL A + + +A P+ +
Sbjct: 90 HPGIAL----------WLGHALEDAGQ-AEAAAA-AYTRAHQLLPEEPYIT 128
Score = 32.5 bits (74), Expect = 1.1
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 493 DINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLW 552
+ D + ++ +P HP A R+ + A L+ + + +
Sbjct: 35 GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIA 94
Query: 553 LEAAR----LQPVDTARAVIAQAVRHIPTSVRIW 582
L + A A +A + +P I
Sbjct: 95 LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYIT 128
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 66.6 bits (162), Expect = 5e-11
Identities = 71/537 (13%), Positives = 138/537 (25%), Gaps = 45/537 (8%)
Query: 509 ETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLE----AARLQPVDTA 564
P A + ++ VQ ++ + L V
Sbjct: 457 GLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRL 516
Query: 565 RAVIAQAVRHIPTSVRIWIKAA----DLETETKAKRRVYRKALEHIPNSVRLWK----AA 616
V+ QA P V LET + V +A P+ V
Sbjct: 517 LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP-VLCQAHGLTPDQVVAIASNGGGK 575
Query: 617 VELEDPEDARILLSRAVECCPTSVELW----LALARLETYENARKVLNKARENIPTDRQI 672
LE + +L +A V LET + VL +A P
Sbjct: 576 QALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVA 635
Query: 673 WTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALI 732
+ ++A + ++ +A V I K+A+E + CQA
Sbjct: 636 IASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAH- 694
Query: 733 RAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKN 792
G+ QE + + + QA P + ++
Sbjct: 695 ------GLTQEQVV-AIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 747
Query: 793 HGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKA 852
T + L +L +A P V ++ + +Q+
Sbjct: 748 LETVQRLLPVLCQAHGLTPAQVVAI-------------------ASNIGGKQALETVQRL 788
Query: 853 VAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLA-AVKLESENNEYE 911
+ + L L + A + + + V + S +
Sbjct: 789 LPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQ 848
Query: 912 RARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMI 971
+ P+ + + + +R +L + V I
Sbjct: 849 ALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAI 908
Query: 972 QSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAI 1028
S + L+ ++R L +L + + PD ++ + + Q
Sbjct: 909 ASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDH 965
Score = 65.8 bits (160), Expect = 8e-11
Identities = 64/519 (12%), Positives = 144/519 (27%), Gaps = 56/519 (10%)
Query: 598 VYRKALEHIPNSVRLWK----AAVELEDPEDARILLSRAVECCPTSVELW----LALARL 649
V +A P V LE + +L +A P V L
Sbjct: 214 VLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQAL 273
Query: 650 ETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALS-------SLSA 702
ET + VL +A P + ++A + ++ +A ++++
Sbjct: 274 ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 333
Query: 703 NGVEINREHWFKEAIEA-EKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGA 761
+ + + +A + Q + +
Sbjct: 334 HDGGKQALETVQRLLPVLCQAHGLTPDQVV----------------AIASNGGGKQALET 377
Query: 762 YECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGA 821
+ + QA P + ++G +++LET+ Q+ + ++ L
Sbjct: 378 VQRLLPVLCQAHGLTPDQVVAIA-------SNGGKQALETV-QRLLPVLCQAHGL----- 424
Query: 822 KSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARG 881
++ ++ T + L +L + P V K V
Sbjct: 425 TPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLP 484
Query: 882 ILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAV 941
+L A P+ + + + +R +L +A P+ +
Sbjct: 485 VLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGL------TPDQVVAIASNG 538
Query: 942 KLESENNEYERARRLLAKARASAPTPRVMI---QSAKLEWCLDNLERALQLLDEAIKVFP 998
+ +R +L +A P V I K L+ ++R L +L +A +
Sbjct: 539 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA--LETVQRLLPVLCQAHGLTQ 596
Query: 999 DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVL 1058
++ + + QA P V ++ + + + VL
Sbjct: 597 VQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVL 656
Query: 1059 EKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQ 1097
+ P+ + + ++ +A
Sbjct: 657 CQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHG 695
Score = 64.3 bits (156), Expect = 2e-10
Identities = 87/595 (14%), Positives = 162/595 (27%), Gaps = 51/595 (8%)
Query: 493 DINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLW 552
+ +++ +L P+ A ++ ++ VQ ++ +
Sbjct: 238 ALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAI 297
Query: 553 LEAA----RLQPVDTARAVIAQAVRHIPTSVRIW----IKAADLETETKAKRRVYRKALE 604
L+ V V+ QA P V LET + V +A
Sbjct: 298 ASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLP-VLCQAHG 356
Query: 605 HIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELWLALAR---LETYENARK 657
P+ V LE + +L +A P V + LET +
Sbjct: 357 LTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLP 416
Query: 658 VLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAI 717
VL +A P + ++A + ++ + A V I K+A+
Sbjct: 417 VLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQAL 476
Query: 718 EAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFP 777
E + CQA D+ + + + QA P
Sbjct: 477 ETVQQLLPVLCQAH--------GLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTP 528
Query: 778 SKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEK 837
+ ++ T + L +L +A P V +A
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAI------ASNGGGKQAL---- 578
Query: 838 NHGTRESLETLLQKAVAHCPKSEVLW--LMGAKSKWLAGDVPAARGILSLAFQANPNSEE 895
T + L +L +A V +G K V +L A P
Sbjct: 579 --ETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQAL--ETVQRLLPVLCQAHGLTPAQVV 634
Query: 896 IWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARR 955
+ + +R +L +A P+ + + +R
Sbjct: 635 AIASHDGGKQALETVQRLLPVLCQAHG------LTPDQVVAIASNGGGKQALETVQRL-- 686
Query: 956 LLAKARASAPTPRVMIQSAKLEWCLDNLER---ALQLLDEAIKVFPDFAKLWMMKGQIEE 1012
L +A T ++ A LE L +L +A + PD G ++
Sbjct: 687 LPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQ 746
Query: 1013 QKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPN 1067
+ + QA P V ++ + + + VL +
Sbjct: 747 ALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLA 801
Score = 60.0 bits (145), Expect = 5e-09
Identities = 80/598 (13%), Positives = 166/598 (27%), Gaps = 49/598 (8%)
Query: 511 NPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAA----RLQPVDTARA 566
P A ++ ++ VQ ++ + L+ +
Sbjct: 188 TPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLP 247
Query: 567 VIAQAVRHIPTSVRIW----IKAADLETETKAKRRVYRKALEHIPNSVRLWK----AAVE 618
V+ QA P V LET + V +A P+ V
Sbjct: 248 VLCQAHGLPPDQVVAIASNIGGKQALETVQRLLP-VLCQAHGLTPDQVVAIASHGGGKQA 306
Query: 619 LEDPEDARILLSRAVECCPTSVELW----LALARLETYENARKVLNKARENIPTDRQIWT 674
LE + +L +A P V LET + VL +A P
Sbjct: 307 LETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 366
Query: 675 TAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQAL--- 731
+ ++A + ++ +A L+ + V + K+A+E + CQA
Sbjct: 367 SNGGGKQALETVQRLLPVLCQAHG-LTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLT 425
Query: 732 ---IRAIIGYGVEQEDRKHTWM-------------EDAESCANQGAYECARAIYAQALAT 775
+ AI + ++ + + A+ + A Q L
Sbjct: 426 PDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPV 485
Query: 776 FPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYF 835
+ ++ + +Q+ + ++ L ++
Sbjct: 486 LCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGL-----TPDQVVAIASNGGG 540
Query: 836 EKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEE 895
++ T + L +L +A P V K V +L A
Sbjct: 541 KQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVV 600
Query: 896 IWLAAVKLESENNEYERARRLLAKARAQAGAF-QANPNSEEIWLAAVKLESENNEYERAR 954
+ + + +R +L +A A A + + A ++ +A
Sbjct: 601 AIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAH 660
Query: 955 RLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQK 1014
L + A + A L+ ++R L +L +A + + ++
Sbjct: 661 GL-TPDQVVAIASNGGGKQA-----LETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQAL 714
Query: 1015 NLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
+ + QA P V ++ + + + VL + P
Sbjct: 715 ETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAI 772
Score = 55.0 bits (132), Expect = 2e-07
Identities = 49/350 (14%), Positives = 100/350 (28%), Gaps = 18/350 (5%)
Query: 758 NQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLW 817
+ + QA P++ ++ T + L +L +A P V
Sbjct: 204 ALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAI 263
Query: 818 LMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVP 877
+A T + L +L +A P V K V
Sbjct: 264 ------ASNIGGKQAL------ETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQ 311
Query: 878 AARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIW 937
+L A P+ + + +R +L +A P+
Sbjct: 312 RLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHG------LTPDQVVAI 365
Query: 938 LAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVF 997
+ + +R +L +A P V I S + L+ ++R L +L +A +
Sbjct: 366 ASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLT 425
Query: 998 PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSV 1057
PD ++ + + Q P V ++ + + + V
Sbjct: 426 PDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPV 485
Query: 1058 LEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWA 1107
L + P+ + I + ++ +A P+ + A
Sbjct: 486 LCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIA 535
Score = 54.3 bits (130), Expect = 2e-07
Identities = 79/584 (13%), Positives = 145/584 (24%), Gaps = 66/584 (11%)
Query: 558 LQPVDTARAVIAQAVRHIPTSVRIWIK----AADLETETKAKRRVYRKALEHIPNSVRLW 613
L+ V V+ QA P V LET + V +A P+ V
Sbjct: 341 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLP-VLCQAHGLTPDQVVAI 399
Query: 614 ---KAAVELEDPEDARILLSRAVECCPTSVELW----LALARLETYENARKVLNKARENI 666
LE + +L +A P V LET + VL +
Sbjct: 400 ASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLT 459
Query: 667 PTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVH 726
P + ++A + ++ +A V I K+A+ +
Sbjct: 460 PAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPV 519
Query: 727 TCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRA 786
CQA D+ + + + QA P +
Sbjct: 520 LCQAH--------GLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 571
Query: 787 AYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLE 846
++ T + L +L +A V +A T + L
Sbjct: 572 GGGKQALETVQRLLPVLCQAHGLTQVQVVAI------ASNIGGKQA------LETVQRLL 619
Query: 847 TLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESE 906
+L +A P V K V +L A P+ + +
Sbjct: 620 PVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQA 679
Query: 907 NNEYERARRLLAKARA----QAGAF---------------------QA---NPNSEEIWL 938
+R +L +A Q A QA P+
Sbjct: 680 LETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIA 739
Query: 939 AAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFP 998
+ + +R +L +A P ++AL+ + + V
Sbjct: 740 SNGGGKQALETVQRLLPVLCQAHGLTP------AQVVAIASNIGGKQALETVQRLLPVLC 793
Query: 999 DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVL 1058
L + + +A +T + + + L +A +
Sbjct: 794 QDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETV 853
Query: 1059 EKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNA 1102
++ L + A + + L
Sbjct: 854 QRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQD 897
Score = 52.3 bits (125), Expect = 9e-07
Identities = 79/605 (13%), Positives = 155/605 (25%), Gaps = 53/605 (8%)
Query: 507 VRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARLQPVDTAR- 565
VR T H A + + + Q EA V +
Sbjct: 70 VRSTVAQHHEALVGHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEATHEDIVGVGKQ 129
Query: 566 ---AVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVR-LWKAAVELED 621
A +A+ +R D K +R A+E + S L A + L
Sbjct: 130 WSGARALEALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNL-T 188
Query: 622 PEDARILLSRAVECCPTSVELWLALARLETYENARKVLNKARENIPTDRQIWTTAAKLEE 681
P + S LET + VL +A P + ++
Sbjct: 189 PAQVVAIASNNG-----------GKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQ 237
Query: 682 AHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAEKAGSVHTCQALIRAIIGYGVE 741
A + R L L + + AI A G + + R +
Sbjct: 238 ALET-------MQRLLPVL-CQAHGLPPDQV--VAI-ASNIGGKQALETVQRLLPVLCQA 286
Query: 742 QE---DRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRES 798
D+ + + QA P + +H +
Sbjct: 287 HGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIA-------SHDGGKQ 339
Query: 799 LETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPK 858
+Q+ + ++ L ++ ++ T + L +L +A P
Sbjct: 340 ALETVQRLLPVLCQAHGL-----TPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD 394
Query: 859 SEVLWL-MGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLL 917
V G K V +L A P+ + + +R
Sbjct: 395 QVVAIASNGGKQAL--ETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRL---- 448
Query: 918 AKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARA-SAPTPRVMIQSAKL 976
P + + ++ +L +A + + +
Sbjct: 449 --LPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGG 506
Query: 977 EWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVP 1036
+ L ++R L +L +A + PD G ++ + + QA P V
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566
Query: 1037 LWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKAL 1096
++ + + + VL + + I + ++ +A
Sbjct: 567 AIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAH 626
Query: 1097 QECPN 1101
P
Sbjct: 627 GLTPA 631
Score = 43.9 bits (103), Expect = 4e-04
Identities = 34/279 (12%), Positives = 83/279 (29%), Gaps = 14/279 (5%)
Query: 837 KNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEI 896
++ ++ Q + P++ ++G +W A +L+ A + ++
Sbjct: 96 QHPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGAR--ALEALLTDAGELRGPPLQL 153
Query: 897 WLAAVKLESENNEYERARRLLAKARAQAGAFQA-NPNSEEIWLAAVKLESENNEYERARR 955
+ ++ + A A GA P + + +R
Sbjct: 154 DTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLP 213
Query: 956 LLAKARASAPTP------RVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQ 1009
+L +A P + A L+ ++R L +L +A + PD
Sbjct: 214 VLCQAHGLTPAQVVAIASHDGGKQA-----LETMQRLLPVLCQAHGLPPDQVVAIASNIG 268
Query: 1010 IEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCA 1069
++ + + QA P V ++ + + + VL + P+
Sbjct: 269 GKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQV 328
Query: 1070 ELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAE 1108
+ + ++ +A P+ + A
Sbjct: 329 VAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIAS 367
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic
reticulum, TPR repeat, UNF protein response; 2.51A {Mus
musculus}
Length = 359
Score = 65.0 bits (159), Expect = 5e-11
Identities = 26/215 (12%), Positives = 67/215 (31%), Gaps = 19/215 (8%)
Query: 907 NNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT 966
++ AR + G +E+ + +K E + A L KA
Sbjct: 67 KMDFTAARLQRGHLLLKQGKLDE---AEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRL 123
Query: 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQ 1026
+ + + A+ LD+ ++V A+L ++ + ++ KA
Sbjct: 124 RSQALDAFDGA----DYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179
Query: 1027 AIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKD 1086
A K + + ++ L + + S + + + + + +V+ L +
Sbjct: 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 239
Query: 1087 IANTMMA------------KALQECPNAGILWAEA 1109
A ++ ++ P+ +
Sbjct: 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRS 274
Score = 56.1 bits (136), Expect = 3e-08
Identities = 41/324 (12%), Positives = 96/324 (29%), Gaps = 38/324 (11%)
Query: 758 NQGAYECARAIYAQALATFPSKKSIWLR--AAYFEKNHGTRESLETLLQKAVAHCPKSEV 815
G + A + +A + L+ ++ E+ + +K + P +
Sbjct: 49 AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGK-LDEAEDDF-KKVLKSNPSEQE 106
Query: 816 LWLMGA---KSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWL 872
+ K+++ A + + T L K + C L + A+
Sbjct: 107 EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK 166
Query: 873 AGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPN 932
G+ A L A + ++ E + L + ++E + + + + + +
Sbjct: 167 EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC------LKLDQD 220
Query: 933 SEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDE 992
+ + +++ N E A L+ R A +
Sbjct: 221 HKRCFAHYKQVKKLNKLIESAEELIRDGR---------------------YTDATSKYES 259
Query: 993 AIKVFPDFA----KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERR 1048
+K P A + + +A S+ ++ P +V A
Sbjct: 260 VMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE 319
Query: 1049 KMLIKARSVLEKGRLRNPNCAELW 1072
+M +A E + N N ++
Sbjct: 320 EMYDEAIQDYEAAQEHNENDQQIR 343
Score = 48.0 bits (115), Expect = 1e-05
Identities = 42/303 (13%), Positives = 91/303 (30%), Gaps = 72/303 (23%)
Query: 982 NLERALQLLDEAIKVFPDFAKLW-------MMKGQIEE---------------------- 1012
L AL A+ PD + + G+ +
Sbjct: 18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQR 77
Query: 1013 -----QKNLLDKAHDTFSQAIKKCPHSVPLWIMLANL---EERRKMLIKARSVLEKGRLR 1064
++ LD+A D F + +K P + L +E +++ +A +
Sbjct: 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137
Query: 1065 ------------NPNCAELWLAAIRVEIRAGLKDI--ANTMMAKALQECPNAGILWAEAI 1110
AEL +R E + A + + A + + EA
Sbjct: 138 AAITFLDKILEVCVWDAELRE--LRAECFIKEGEPRKAISDLKAASKLKSD----NTEAF 191
Query: 1111 F----LEPRPQRKTKSVDALKKC-EHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKT 1165
+ L + S+ +++C + D + + N+ + G T
Sbjct: 192 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 251
Query: 1166 KSVDALKKC-EHDPHVLLAVSKLF----WCENKNQKCRE---WFNRTVKIDPDLGDAWAY 1217
+ + + +P V + C +K++K E + ++++PD + A
Sbjct: 252 DATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD--NVNAL 309
Query: 1218 FYK 1220
+
Sbjct: 310 KDR 312
Score = 44.6 bits (106), Expect = 1e-04
Identities = 43/357 (12%), Positives = 98/357 (27%), Gaps = 57/357 (15%)
Query: 599 YRKALEHIPNSVRLW--KAAV--ELEDPEDARILLSRAVECCPTSVELWL----ALARLE 650
+ A++ P++ + +A V + + A L++ + L L +
Sbjct: 26 FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85
Query: 651 TYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINRE 710
+ A K ++ P++++ ++L +A +
Sbjct: 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD------------------------EMQ 121
Query: 711 HWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYA 770
+A++A + I+ V + AE +G A +
Sbjct: 122 RLRSQALDAFDGADYTAAITFLDKILEVCVWDAE---LRELRAECFIKEGEPRKAISDLK 178
Query: 771 QALATFPSKKSIWL-RA-AYFEKNHGTRESLETLLQKAVAHCPKSEVLW--LMGAKSNKK 826
A + + Y++ SL +++ + + + K K
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGD-HELSLSE-VRECLKLDQDHKRCFAHYKQVKKLNK 236
Query: 827 SIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMG----AKSKWLAGDVPAARGI 882
I ++ + + P + A I
Sbjct: 237 LIESAEELIRDGR-YTDATS-KYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294
Query: 883 LSLAFQANPNSEEIW--LAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIW 937
S Q P++ A L E Y+ A + A+ + N N ++I
Sbjct: 295 CSEVLQMEPDNVNALKDRAEAYLIEEM--YDEAIQDYEAAQ------EHNENDQQIR 343
Score = 44.6 bits (106), Expect = 1e-04
Identities = 38/317 (11%), Positives = 89/317 (28%), Gaps = 50/317 (15%)
Query: 511 NPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEAARLQPVDTARAVIAQ 570
+ A + L GK+ A + K + N + ++ ++L D + + +Q
Sbjct: 67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQ 126
Query: 571 AVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLW----KAAVELEDPEDAR 626
A+ + A K LE L + ++ +P A
Sbjct: 127 ALDAF--DGADYTAAITF----------LDKILEVCVWDAELRELRAECFIKEGEPRKAI 174
Query: 627 ILLSRAVECCPTSVELW----LALARLETYENARKVLNKARENIPTDRQIWTTAAKLEEA 682
L A + + E + +L +E + + + + ++ +
Sbjct: 175 SDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA-------H 227
Query: 683 HGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEA-EKAGSVHTCQALIRAIIGYGVE 741
+ ++K+I+ A + + +A E A +
Sbjct: 228 YKQVKKLNKLIESAEELIRDGR--------YTDATSKYESVMKTEPSVAEYTVRSKERI- 278
Query: 742 QEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIWL-RAAYFEKNHGTRESLE 800
+ A I ++ L P + RA + E+++
Sbjct: 279 -----------CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQ 327
Query: 801 TLLQKAVAHCPKSEVLW 817
+ A H + +
Sbjct: 328 D-YEAAQEHNENDQQIR 343
Score = 44.2 bits (105), Expect = 2e-04
Identities = 48/445 (10%), Positives = 115/445 (25%), Gaps = 108/445 (24%)
Query: 614 KAAVELEDPEDARILLSRAVECCPTSVELW----LALARLETYENARKVLNKARENIPTD 669
K + DA AV+ P + + + + A L K
Sbjct: 11 KKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF 70
Query: 670 RQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEAIEAE-KAGSVHTC 728
L G +D A FK+ +++
Sbjct: 71 TAARLQRGHLLLKQGK-------LDEAEDD-------------FKKVLKSNPSEQEEKEA 110
Query: 729 QALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFPSKKSIW-LRA- 786
++ + D A + Y A + L + LRA
Sbjct: 111 ESQLVKA--------DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAE 162
Query: 787 AYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLE 846
+ ++ R+++ L+ A + + K S Y++
Sbjct: 163 CFIKEGE-PRKAISD-LKAASKLKSDNTEAF------YKIST----LYYQLGD------- 203
Query: 847 TLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESE 906
+ +++ + + + + + + +++
Sbjct: 204 --HELSLSEVRE---------------------------CLKLDQDHKRCFAHYKQVKKL 234
Query: 907 NNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYE-RARRLLAKARASAP 965
N E A L+ R + + + +K E EY R++ + +
Sbjct: 235 NKLIESAEELIRDGRYTD--------ATSKYESVMKTEPSVAEYTVRSKERICHCFSK-- 284
Query: 966 TPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFS 1025
+ A+++ E +++ PD + + + + D+A +
Sbjct: 285 --------------DEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 330
Query: 1026 QAIKKCPHSVPLWIMLANLEERRKM 1050
A + + + L + K
Sbjct: 331 AAQEHNENDQQIREGLEKAQRLLKQ 355
Score = 42.6 bits (101), Expect = 6e-04
Identities = 28/212 (13%), Positives = 64/212 (30%), Gaps = 31/212 (14%)
Query: 493 DINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLW 552
D D A L + E A G+ + A + + + + + +
Sbjct: 132 DGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAF 191
Query: 553 LEAAR----LQPVDTARAVIAQAVRHIPTSVRIWIKAADLETETKAKRR----------- 597
+ + L + + + + + ++ R + ++ K
Sbjct: 192 YKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYT 251
Query: 598 ----VYRKALEHIPNSVRLWKAA--------VELEDPEDARILLSRAVECCPTSVELWL- 644
Y ++ P+ + + E P +A + S ++ P +V
Sbjct: 252 DATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKD 311
Query: 645 ---ALARLETYENARKVLNKARENIPTDRQIW 673
A E Y+ A + A+E+ D+QI
Sbjct: 312 RAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110
kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 64.8 bits (157), Expect = 1e-10
Identities = 33/187 (17%), Positives = 60/187 (32%), Gaps = 5/187 (2%)
Query: 929 ANPNSEEIW--LAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLER 985
+ P + LA +K E E A RL KA P A + L+
Sbjct: 4 SCPTHADSLNNLANIKREQ--GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 61
Query: 986 ALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLE 1045
AL EAI++ P FA + G ++ + A +++AI+ P LA++
Sbjct: 62 ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIH 121
Query: 1046 ERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGIL 1105
+ + +A + P+ + + + M K + +
Sbjct: 122 KDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEK 181
Query: 1106 WAEAIFL 1112
Sbjct: 182 NRLPSVH 188
Score = 37.9 bits (87), Expect = 0.023
Identities = 23/173 (13%), Positives = 52/173 (30%), Gaps = 15/173 (8%)
Query: 510 TNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLW----LEAARLQPVDTAR 565
+ P H + A ++ G ++ A L K E + + A
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 63
Query: 566 AVIAQAVRHIPTSVRIWIKAADLETETKAKRR---VYRKALEHIPNSVRLWK----AAVE 618
+A+R PT + + E + + Y +A++ P +
Sbjct: 64 MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD 123
Query: 619 LEDPEDARILLSRAVECCPTSVE----LWLALARLETYENARKVLNKARENIP 667
+ +A A++ P + L L + + + + + K +
Sbjct: 124 SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176
Score = 34.8 bits (79), Expect = 0.23
Identities = 35/307 (11%), Positives = 81/307 (26%), Gaps = 23/307 (7%)
Query: 758 NQGAYECARAIYAQALATFPSKKSIW--LRAAYFEKNHGTRESLETLLQKAVAHCPKSEV 815
QG E A +Y +AL FP + L + ++ +E+L ++A+ P
Sbjct: 21 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK-LQEALM-HYKEAIRISPTF-- 76
Query: 816 LWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGD 875
+ K + +A+ P A +G+
Sbjct: 77 ----------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126
Query: 876 VPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEE 935
+P A A + P+ + + ++ + K +
Sbjct: 127 IPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPS 186
Query: 936 IWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIK 995
+ L ++ + +A + + L + L++ +
Sbjct: 187 VHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVS-S 245
Query: 996 VFPDFAKLWMMKGQIEEQKNLLDKAH------DTFSQAIKKCPHSVPLWIMLANLEERRK 1049
F + +M+ + D + K +I L+ + K
Sbjct: 246 DFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFIDLSQIPCNGK 305
Query: 1050 MLIKARS 1056
+
Sbjct: 306 AADRIHQ 312
Score = 34.4 bits (78), Expect = 0.26
Identities = 27/213 (12%), Positives = 58/213 (27%), Gaps = 21/213 (9%)
Query: 607 PNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELW----LALARLETYENARKV 658
P E + E+A L +A+E P L + + A
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 659 LNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVE--INREHWFKEA 716
+A PT ++ + + + RA+ ++ + N K++
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI-QINPAFADAHSNLASIHKDS 124
Query: 717 IEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATF 776
+A + A+ + D + A + + ++
Sbjct: 125 GNIPEA-----IASYRTALKL----KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175
Query: 777 PSKKSIWLRAAYFEKNHGTRESLETLLQKAVAH 809
+ R +H L +KA+A
Sbjct: 176 ADQLEKN-RLPSVHPHHSMLYPLSHGFRKAIAE 207
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 61.9 bits (151), Expect = 2e-10
Identities = 41/229 (17%), Positives = 85/229 (37%), Gaps = 17/229 (7%)
Query: 886 AFQANPNSEEIW--LAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKL 943
+ + + + L L+ E+A+ L KA + +P+S + A +
Sbjct: 29 TDKGRDEARDAYIQLGLGYLQ--RGNTEQAKVPLRKA------LEIDPSSADAHAALAVV 80
Query: 944 ESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKV--FPDF 1000
E + A KA AS RV+ + E A Q L EA + +P+
Sbjct: 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER 140
Query: 1001 AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEK 1060
++++ G + Q +A + F ++++ + + + +A+L + + + AR +
Sbjct: 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200
Query: 1061 GRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEA 1109
A L IR+ +D A + + + P + E
Sbjct: 201 FAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGS----LEY 245
Score = 46.1 bits (110), Expect = 3e-05
Identities = 32/216 (14%), Positives = 69/216 (31%), Gaps = 13/216 (6%)
Query: 832 AAYFEKNHGTRESLETLLQKAVAHCPKS-EVLWLMGAKSKWLAGDVPAARGILSLAFQAN 890
Y ++ + T ++ L +KA+ P S + + + + A A ++
Sbjct: 45 LGYLQRGN-TEQAKVPL-RKALEIDPSSADAHAALAVVFQTE-MEPKLADEEYRKALASD 101
Query: 891 PNSEEIW--LAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENN 948
+ + E YE A + L +A P ++ + +
Sbjct: 102 SRNARVLNNYGGFL--YEQKRYEEAYQRLLEASQDTL----YPERSRVFENLGLVSLQMK 155
Query: 949 EYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMK 1007
+ +A+ K+ P V ++ A L + A Q D + A+ ++
Sbjct: 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLG 215
Query: 1008 GQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLAN 1043
++ + D A Q + P S+ A
Sbjct: 216 IRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQAE 251
Score = 39.2 bits (92), Expect = 0.006
Identities = 12/81 (14%), Positives = 26/81 (32%)
Query: 992 EAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKML 1051
+ K + ++ G Q+ ++A +A++ P S LA + +
Sbjct: 28 KTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEP 87
Query: 1052 IKARSVLEKGRLRNPNCAELW 1072
A K + A +
Sbjct: 88 KLADEEYRKALASDSRNARVL 108
Score = 32.6 bits (75), Expect = 0.64
Identities = 12/110 (10%), Positives = 36/110 (32%), Gaps = 10/110 (9%)
Query: 599 YRKALEHI--PNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELWLALARLET- 651
+A + P R++ +++++ P A+ +++ + L +A L
Sbjct: 128 LLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK 187
Query: 652 ---YENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALS 698
Y AR+ + + + + +L + + +
Sbjct: 188 EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 59.8 bits (145), Expect = 5e-10
Identities = 23/210 (10%), Positives = 56/210 (26%), Gaps = 24/210 (11%)
Query: 893 SEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYER 952
S + L V E + +A + N + E++ ++ + +
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQT------IALNIDRTEMYYWT-NVDKNSEISSK 55
Query: 953 ARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEE 1012
LA A N ++A E ++ P+ +++
Sbjct: 56 LATELALAYKK----------------NRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV 99
Query: 1013 QKNLLDKAHDTFSQAIKKCPHSVPLWIMLAN-LEERRKMLIKARSVLEKGRLRNPNCAEL 1071
+ A + + ++ ++ I L N + K K
Sbjct: 100 CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYA 159
Query: 1072 WLAAIRVEIRAGLKDIANTMMAKALQECPN 1101
++ + A + K + P+
Sbjct: 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPS 189
Score = 45.9 bits (109), Expect = 2e-05
Identities = 16/126 (12%), Positives = 39/126 (30%), Gaps = 16/126 (12%)
Query: 964 APTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMK---------------- 1007
+ M+Q +A+ + I + D +++
Sbjct: 1 GQSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATEL 60
Query: 1008 GQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPN 1067
++ DKA+ + + ++K P++V A ++ R A + EK +
Sbjct: 61 ALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120
Query: 1068 CAELWL 1073
+
Sbjct: 121 NLAANI 126
Score = 35.5 bits (82), Expect = 0.060
Identities = 21/189 (11%), Positives = 52/189 (27%), Gaps = 26/189 (13%)
Query: 493 DINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLW 552
+ +A + N + + + + + A L + +
Sbjct: 16 EAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN------ 69
Query: 553 LEAARLQPVDTARAVIAQAVRHIPTSVRIWIKAADLETETKAKRR---VYRKALEHIPNS 609
D A + ++ P +V A+++ ++ +Y K L+ ++
Sbjct: 70 --------YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN 121
Query: 610 VRLW----KAAVELEDPEDARI-LLSRAVECCPTSVELW----LALARLETYENARKVLN 660
+ + E ++ + + L+ YE AR L
Sbjct: 122 LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQ 181
Query: 661 KARENIPTD 669
K P+
Sbjct: 182 KVILRFPST 190
Score = 35.1 bits (81), Expect = 0.092
Identities = 18/147 (12%), Positives = 43/147 (29%), Gaps = 14/147 (9%)
Query: 874 GDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNS 933
+ A Q PN+ + A +++ + + A R+ K Q ++
Sbjct: 68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI------LQLEADN 121
Query: 934 EEIWLA-AVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLD 991
+ + ++ K +S + + E+A L
Sbjct: 122 LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQ 181
Query: 992 EAIKVFPDFA------KLWMMKGQIEE 1012
+ I FP K+ ++ ++
Sbjct: 182 KVILRFPSTEAQKTLDKILRIEKEVNR 208
Score = 31.3 bits (71), Expect = 1.4
Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 31/165 (18%)
Query: 493 DINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLW 552
+ KA L K + + PN+ A A ++ G+ + A ++
Sbjct: 66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDA--------------LRMY 111
Query: 553 LEAARLQPVDTARAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRL 612
+ +L+ D A I + A+ E K K K L
Sbjct: 112 EKILQLEA-DNLAANIFLGN--------YYYLTAEQE---KKKLETDYKKLSSPTKMQYA 159
Query: 613 W----KAAVELEDPEDARILLSRAVECCPTSVELWLALARLETYE 653
+ + E AR L + + P++ E L ++ E
Sbjct: 160 RYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKILRIE 203
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA
complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A
Length = 499
Score = 57.8 bits (140), Expect = 1e-08
Identities = 53/377 (14%), Positives = 100/377 (26%), Gaps = 49/377 (12%)
Query: 758 NQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLW 817
+ + QA P + ++ T ++L +L +A P+ V
Sbjct: 118 ALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAI 177
Query: 818 LMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVP 877
++ ++ T + L +L +A P+ V K V
Sbjct: 178 -----ASN-------GGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 225
Query: 878 AARGILSLAFQANPNSEEIW--LAAVKLESENNE-----YERARRL----------LAKA 920
+L A P K E + +A L +
Sbjct: 226 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGG 285
Query: 921 RAQAGAFQA-----------NPNSEEIW--LAAVKLESENNEYERARRLLAKARASAPT- 966
+ Q P K E +R +L +A P
Sbjct: 286 KQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALET--VQRLLPVLCQAHGLTPQQ 343
Query: 967 PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQ 1026
+ + L+ ++R L +L +A + P+ G ++ + + Q
Sbjct: 344 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 403
Query: 1027 AIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKD 1086
A P V ++ + + + VL + P A R L+
Sbjct: 404 AHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAI--ASNGGGRPALES 461
Query: 1087 IANTMMA--KALQECPN 1101
I + AL N
Sbjct: 462 IVAQLSRPDPALAALTN 478
Score = 57.1 bits (138), Expect = 3e-08
Identities = 48/329 (14%), Positives = 92/329 (27%), Gaps = 24/329 (7%)
Query: 751 EDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFE--KNHGTRESLETLLQKAVA 808
A +G A++A A + + L +H + +Q+ +
Sbjct: 36 GQLLKIAKRGGVTAVEAVHAWRNAL--TGAPLNLTPEQVVAIASHDGGKQALETVQRLLP 93
Query: 809 HCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAK 868
++ G + ++ T + L +L +A P+ V
Sbjct: 94 VLCQA-----HGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDG 148
Query: 869 SKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQ 928
K V A +L A P + + +R +L +A
Sbjct: 149 GKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH------G 202
Query: 929 ANPNSEEIW--LAAVKLESENNEYERARRLLAKARASAPTPRVMIQS---AKLEWCLDNL 983
P K E +R +L +A P V I S K L+ +
Sbjct: 203 LTPQQVVAIASNGGGKQALET--VQRLLPVLCQAHGLTPQQVVAIASNGGGKQA--LETV 258
Query: 984 ERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLAN 1043
+R L +L +A + P ++ + + QA P V
Sbjct: 259 QRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGG 318
Query: 1044 LEERRKMLIKARSVLEKGRLRNPNCAELW 1072
++ + + + VL + P
Sbjct: 319 GKQALETVQRLLPVLCQAHGLTPQQVVAI 347
Score = 52.8 bits (127), Expect = 5e-07
Identities = 27/204 (13%), Positives = 54/204 (26%), Gaps = 11/204 (5%)
Query: 872 LAGDVPAARGILSLAFQANPNSEEIW--LAAVKLESENNEYERARRLLAKARAQAGAFQA 929
L + A + Q + V + + A L
Sbjct: 16 LEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNA--LTGAP------LNL 67
Query: 930 NPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQS-AKLEWCLDNLERALQ 988
P + + +R +L +A P V I S + L+ ++R L
Sbjct: 68 TPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLP 127
Query: 989 LLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERR 1048
+L +A + P+ ++ + QA P V ++
Sbjct: 128 VLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQAL 187
Query: 1049 KMLIKARSVLEKGRLRNPNCAELW 1072
+ + + VL + P
Sbjct: 188 ETVQRLLPVLCQAHGLTPQQVVAI 211
Score = 52.8 bits (127), Expect = 6e-07
Identities = 15/122 (12%), Positives = 35/122 (28%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
L+ ++R L +L +A + P ++ + + QA P V
Sbjct: 85 LETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIA 144
Query: 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQEC 1099
++ + + VL + P + + ++ +A
Sbjct: 145 SHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 204
Query: 1100 PN 1101
P
Sbjct: 205 PQ 206
Score = 45.1 bits (107), Expect = 1e-04
Identities = 62/455 (13%), Positives = 109/455 (23%), Gaps = 78/455 (17%)
Query: 493 DINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLW 552
+ +++ +L P A + ++ VQ ++ +
Sbjct: 84 ALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAI 143
Query: 553 LEAA----RLQPVDTARAVIAQAVRHIPTSVRIW----IKAADLETETKAKRRVYRKALE 604
L+ V V+ QA P V LET + V +A
Sbjct: 144 ASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLL-PVLCQAHG 202
Query: 605 HIPNSVRLWK----AAVELEDPEDARILLSRAVECCPTSVELW----LALARLETYENAR 656
P V LE + +L +A P V LET +
Sbjct: 203 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLL 262
Query: 657 KVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINREHWFKEA 716
VL +A P A +N+ + ++ +
Sbjct: 263 PVLCQAHGLTPQQ----------VVAIASNSGGKQALET-----------------VQRL 295
Query: 717 IEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATF 776
+ CQA + + + + QA
Sbjct: 296 LPV-------LCQAHGL--------TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 340
Query: 777 PSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFE 836
P + ++ T + L +L +A P+ V +A
Sbjct: 341 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAI------ASNGGGKQAL--- 391
Query: 837 KNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEI 896
T + L +L +A P+ V K V +L A P
Sbjct: 392 ---ETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVA 448
Query: 897 W--LAAVKLESENNE-----YERARRLLAKARAQA 924
+ E+ + A L A
Sbjct: 449 IASNGGGRPALESIVAQLSRPDPALAALTNDHLVA 483
Score = 44.7 bits (106), Expect = 2e-04
Identities = 20/192 (10%), Positives = 49/192 (25%), Gaps = 20/192 (10%)
Query: 917 LAKARAQAGAFQAN-PNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAK 975
+ A A +A + E+ ++L++ R + A
Sbjct: 6 HHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEA------------- 52
Query: 976 LEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSV 1035
+ AL + + P+ ++ + + QA P V
Sbjct: 53 ----VHAWRNAL--TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQV 106
Query: 1036 PLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKA 1095
++ + + + VL + P + + ++ +A
Sbjct: 107 VAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQA 166
Query: 1096 LQECPNAGILWA 1107
P + A
Sbjct: 167 HGLTPEQVVAIA 178
Score = 32.4 bits (74), Expect = 0.96
Identities = 12/127 (9%), Positives = 34/127 (26%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041
L A +L +++ +G + + + + + P V
Sbjct: 19 LLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASH 78
Query: 1042 ANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPN 1101
++ + + + VL + P + + ++ +A P
Sbjct: 79 DGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPE 138
Query: 1102 AGILWAE 1108
+ A
Sbjct: 139 QVVAIAS 145
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Length = 472
Score = 57.6 bits (139), Expect = 1e-08
Identities = 60/385 (15%), Positives = 118/385 (30%), Gaps = 60/385 (15%)
Query: 758 NQGAYECARAIYAQALATFPSKKSI---------WLRAAYFEKNHGTRESLETLLQKAVA 808
+G E A +A + + W A+ + G ++ + K
Sbjct: 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122
Query: 809 HCPK-SEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKS-EVLWLMG 866
C K S + + + + W R + E + +KA+ PK+ E +
Sbjct: 123 VCEKFSSPYRIESPELDCEEGWTRLKCGGNQN---ERAKVCFEKALEKKPKNPEFTSGLA 179
Query: 867 AKSKWL--AGDVPAARGILSLAFQANPNSEEIW----LAAVKLESENNEYERARRLLAKA 920
S L A L A + NP+++ + L K+ E E +L+ +A
Sbjct: 180 IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEA 239
Query: 921 RAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-------------P 967
+ P ++ +A K +E ++A LL KA P
Sbjct: 240 ------LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRA 293
Query: 968 RVMIQSAKLEWCLDNLERALQLLDEAIKVF-------PDFAKLWMMKGQIEEQKNLLDKA 1020
+V E + + L+L+ A+ + ++ + + + ++A
Sbjct: 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA 353
Query: 1021 HDTFSQAIKKCPHSVPLWIMLAN----LEERRKMLIKARSVLEKGRLRNPNCAELWLAAI 1076
F + K V ++ + K KA +G N E
Sbjct: 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE------ 407
Query: 1077 RVEIRAGLKDIANTMMAKALQECPN 1101
+ +KD + L +
Sbjct: 408 ----KEKMKDKLQKIAKMRLSKNGA 428
Score = 55.7 bits (134), Expect = 7e-08
Identities = 47/282 (16%), Positives = 91/282 (32%), Gaps = 35/282 (12%)
Query: 822 KSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHC---------PKSEVLWLMGAKSKWL 872
+ K ++ AY + G E+ L+KA +S V W A +
Sbjct: 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYH 106
Query: 873 AGDVPAARGILSLAFQANPNSEEIW----------LAAVKLESENNEYERARRLLAKARA 922
G + + + + +L+ N+ ERA+ KA
Sbjct: 107 MGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKA-- 164
Query: 923 QAGAFQANPNSEEIW--LAAVKLESEN-NEYERARRLLAKARASAPT-PRVMIQSA---- 974
+ P + E LA +N + A L +A P + + A
Sbjct: 165 ----LEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLH 220
Query: 975 KLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS 1034
K+ + +L++EA++ P + + +K+ DKA + +A++ P++
Sbjct: 221 KMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNN 280
Query: 1035 VPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAI 1076
L + + + E G EL A+
Sbjct: 281 AYLHCQIGCCYRAKVFQVMNLR--ENGMYGKRKLLELIGHAV 320
Score = 51.9 bits (124), Expect = 1e-06
Identities = 39/277 (14%), Positives = 79/277 (28%), Gaps = 48/277 (17%)
Query: 758 NQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLW 817
+ +AL P + AA F + + LL+KA+ + P + L
Sbjct: 225 EGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLH 284
Query: 818 LMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVP 877
+ ++ E + L L+ AVAH K
Sbjct: 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK------------------- 325
Query: 878 AARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIW 937
A +AN N + L + ++YE A K F
Sbjct: 326 --------ADEANDNLFRVCSILASLHALADQYEEAEYYFQK------EFSKELTPVAKQ 371
Query: 938 LA----AVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDE- 992
L + ++A + V I E + ++ LQ + +
Sbjct: 372 LLHLRYGNFQLYQMKCEDKAIHHFIEG--------VKINQKSREK--EKMKDKLQKIAKM 421
Query: 993 AIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK 1029
+ ++ + ++E + +A + + ++
Sbjct: 422 RLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458
Score = 49.9 bits (119), Expect = 4e-06
Identities = 46/327 (14%), Positives = 98/327 (29%), Gaps = 51/327 (15%)
Query: 917 LAKARAQAGAFQANPNSEEIW--LAAVKLESENNE-----YERARRLLAKARASAPTPRV 969
FQ + LA +K NE +A L+ + A R
Sbjct: 34 FEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRS 93
Query: 970 MIQSAKLEWC---LDNLERALQLLDEAIKVFPDFAKLWMMKG----------QIEEQKNL 1016
++ W + L +D+ V F+ + ++ +++ N
Sbjct: 94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQ 153
Query: 1017 LDKAHDTFSQAIKKCPHSVPLWIMLANLE---ERRKMLIKARSVLEKGRLRNPNCAELW- 1072
++A F +A++K P + LA + A L + NP+ L
Sbjct: 154 NERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKV 213
Query: 1073 ---LAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFLEPRPQRKTKSVDALKKC 1129
L ++ + ++ +AL++ P + A R K+++ LKK
Sbjct: 214 LLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKA 273
Query: 1130 -EHDPHVLLAVSKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVLLAVSKLF 1188
E+ P+ ++ C + K + E+ + + +L
Sbjct: 274 LEYIPNNAYLHCQIGCCY-----------------RAKVFQVMNLRENGMYGKRKLLELI 316
Query: 1189 WCENKNQKCREWFNRTVKIDPDLGDAW 1215
+ + + +L
Sbjct: 317 ------GHAVAHLKKADEANDNLFRVC 337
Score = 42.2 bits (99), Expect = 0.001
Identities = 41/304 (13%), Positives = 95/304 (31%), Gaps = 50/304 (16%)
Query: 978 WCLDNLERALQLLDEAIKVFPDF------AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKC 1031
W L E +L ++ + +F A + + ++ K + A + +A +
Sbjct: 22 WNLMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 1032 ---------PHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELW---------- 1072
S+ W A + L + ++K + + +
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 1073 LAAIRVEIRAGLKDIANTMMAKALQECPN---AGILWAEAIFLEPRPQRKTKSVDALKKC 1129
R++ + A KAL++ P A A + ++D L++
Sbjct: 142 EGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201
Query: 1130 -EHDP-----HVLLAV--SKLFWCENKNQKCHRSGSRRCMGVKTKSVDALKKCEHDPHVL 1181
+P VLLA+ K+ + + + AL+K VL
Sbjct: 202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEE-----------ALEKAPGVTDVL 250
Query: 1182 LAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAW---AYFYKFEIINGTEETQAEVKKRC 1238
+ +K + +++ K E + ++ P+ Y+ ++ + + +
Sbjct: 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKR 310
Query: 1239 LAAE 1242
E
Sbjct: 311 KLLE 314
Score = 35.3 bits (81), Expect = 0.14
Identities = 50/324 (15%), Positives = 87/324 (26%), Gaps = 42/324 (12%)
Query: 620 EDPEDARILLSRAVECCPTSVELWLALA-------RLETYENARKVLNKARENIPTDRQI 672
E A++ +A+E P + E LA +NA L +A P ++ +
Sbjct: 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211
Query: 673 W----TTAAKLEEAHGNNAMVDKIIDRALS-------SLSANGVEINREHWFKEAIEA-E 720
K+ E +K+++ AL L + R+ +AIE +
Sbjct: 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271
Query: 721 KAGSVHTCQALI---RAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQALATFP 777
KA A + + A A +A
Sbjct: 272 KALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND 331
Query: 778 SKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEK 837
+ + A E E QK + K+ + LR F+
Sbjct: 332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV---------AKQLLHLRYGNFQL 382
Query: 838 NHGTRESL-ETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEI 896
E + V KS M K + +A + N E
Sbjct: 383 YQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIA----------KMRLSKNGADSEA 432
Query: 897 WLAAVKLESENNEYERARRLLAKA 920
L+ N + ++A +
Sbjct: 433 LHVLAFLQELNEKMQQADEDSERG 456
Score = 30.7 bits (69), Expect = 3.4
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 599 YRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELWLALARLETYEN 654
+ALE P + K ++P+ A LL +A+E P + L + Y
Sbjct: 236 VEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC--YRA 293
Query: 655 ARKVLNKARENIPTDRQ 671
+ REN ++
Sbjct: 294 KVFQVMNLRENGMYGKR 310
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail virulence;
1.54A {Neisseria meningitidis}
Length = 225
Score = 55.0 bits (133), Expect = 3e-08
Identities = 32/195 (16%), Positives = 65/195 (33%), Gaps = 25/195 (12%)
Query: 906 ENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAP 965
+Y +A + A +++P +E WL ++ ++A+ +A + P
Sbjct: 20 RGQDYRQATASIEDA------LKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP 73
Query: 966 TPRVMIQSAK--------LEWCLDNLERALQLLDEAIKV--FPDFAKLWMMKGQIEEQKN 1015
SA+ L L+ ++ D+A+ +P + KG ++
Sbjct: 74 ------DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQG 127
Query: 1016 LLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAE--LWL 1073
A +++ P P + LA + L A +K + R L L
Sbjct: 128 QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLL 187
Query: 1074 AAIRVEIRAGLKDIA 1088
++ G A
Sbjct: 188 -GWKIAKALGNAQAA 201
Score = 53.4 bits (129), Expect = 9e-08
Identities = 29/180 (16%), Positives = 53/180 (29%), Gaps = 12/180 (6%)
Query: 874 GDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNS 933
D A + A +++P +E WL ++ ++A+ +A P+S
Sbjct: 22 QDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQA------LSIKPDS 75
Query: 934 EEIW--LAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCL---DNLERALQ 988
EI L N + KA A P I + C A
Sbjct: 76 AEINNNYGWF-LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEA 134
Query: 989 LLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERR 1048
L ++ P F + + + L A F + + ++L +
Sbjct: 135 YLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKA 194
Score = 43.0 bits (102), Expect = 2e-04
Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 3/125 (2%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
+ +A +++A+K P W+++ +I + + DKA ++F QA+ P S +
Sbjct: 21 GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINN 80
Query: 1040 MLAN-LEERRKMLIKARSVLEK--GRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKAL 1096
L R ++ + +K P L + G +A + ++L
Sbjct: 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSL 140
Query: 1097 QECPN 1101
P
Sbjct: 141 AAQPQ 145
Score = 34.5 bits (80), Expect = 0.15
Identities = 8/72 (11%), Positives = 18/72 (25%), Gaps = 6/72 (8%)
Query: 599 YRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVE--LWLALARLETY 652
+++L P + + + DA + L L +
Sbjct: 136 LKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL 195
Query: 653 ENARKVLNKARE 664
NA+ +
Sbjct: 196 GNAQAAYEYEAQ 207
Score = 31.8 bits (73), Expect = 0.90
Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 10/79 (12%)
Query: 599 YRKALEHI--PNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELWLALARLET- 651
+ KAL P + + A L R++ P + LAR +
Sbjct: 100 FDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKML 159
Query: 652 ---YENARKVLNKARENIP 667
+A K + +
Sbjct: 160 AGQLGDADYYFKKYQSRVE 178
Score = 31.8 bits (73), Expect = 1.2
Identities = 14/87 (16%), Positives = 25/87 (28%), Gaps = 7/87 (8%)
Query: 873 AGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPN 932
G A L + A P + + + + A K +++ QA+
Sbjct: 126 QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDL 185
Query: 933 SEEIWLAAV---KLESENNEYERARRL 956
L L + YE +L
Sbjct: 186 ----LLGWKIAKALGNAQAAYEYEAQL 208
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110;
OGT, glcnac, nucleoporin, O-linked glycosylation, TPR
repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 56.0 bits (136), Expect = 4e-08
Identities = 38/211 (18%), Positives = 75/211 (35%), Gaps = 7/211 (3%)
Query: 863 WLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARA 922
+ A ++ AGD AA ++ P++ + L + + +R+ A
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA-- 59
Query: 923 QAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLD 981
+ NP E + + E + + A A P I A
Sbjct: 60 ----IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041
++E A+Q A++ PD + G + + L++A + +AI+ P+ W L
Sbjct: 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNL 175
Query: 1042 ANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
+ + + A EK +PN + +
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAY 206
Score = 55.2 bits (134), Expect = 7e-08
Identities = 47/247 (19%), Positives = 90/247 (36%), Gaps = 11/247 (4%)
Query: 829 WLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQ 888
+ A+ E G E+ E + P + + L+ + + + + +LA +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 889 ANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIW--LAAVKLESE 946
NP E + + E + + A A + P+ + + LAA
Sbjct: 62 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA------LRLKPDFIDGYINLAAAL--VA 113
Query: 947 NNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWM 1005
+ E A + A P V L L LE A +AI+ P+FA W
Sbjct: 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 173
Query: 1006 MKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRN 1065
G + + + A F +A+ P+ + +I L N+ + ++ +A + + +
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233
Query: 1066 PNCAELW 1072
PN A +
Sbjct: 234 PNHAVVH 240
Score = 55.2 bits (134), Expect = 7e-08
Identities = 65/332 (19%), Positives = 109/332 (32%), Gaps = 33/332 (9%)
Query: 749 WMEDAESCANQGAYECARAIYAQALATFPSKKSIWLR--AAYFEKNHGTRESLETLLQKA 806
ME A G +E A Q P + L + +F+ S A
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR-LDRSAH-FSTLA 59
Query: 807 VAHCPKSEVLWL-MGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLM 865
+ P + +G Y E+ +E++E + A+ P ++
Sbjct: 60 IKQNPLLAEAYSNLG-----------NVYKERGQ-LQEAIE-HYRHALRLKPDFIDGYIN 106
Query: 866 GAKSKWLAGDVPAARGILSLAFQANPNSEEIW--LAAVKLESENNEYERARRLLAKARAQ 923
A + AGD+ A A Q NP+ + L + E A+ K
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLL--KALGRLEEAKACYLK---- 160
Query: 924 AGAFQANPNSEEIW--LAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCL 980
A + PN W L V + E A KA P I +
Sbjct: 161 --AIETQPNFAVAWSNLGCVF--NAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA 216
Query: 981 DNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIM 1040
+RA+ A+ + P+ A + + ++ L+D A DT+ +AI+ PH +
Sbjct: 217 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCN 276
Query: 1041 LANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
LAN + + + +A P A+
Sbjct: 277 LANALKEKGSVAEAEDCYNTALRLCPTHADSL 308
Score = 47.5 bits (114), Expect = 2e-05
Identities = 14/93 (15%), Positives = 41/93 (44%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
++ A + A+++ P A I+ ++ +++A + +A++ P
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343
Query: 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
LA++ +++ L +A ++ +P A+ +
Sbjct: 344 NLASVLQQQGKLQEALMHYKEAIRISPTFADAY 376
Score = 42.1 bits (100), Expect = 0.001
Identities = 17/65 (26%), Positives = 33/65 (50%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
N+E A++L +A++VFP+FA + +Q+ L +A + +AI+ P +
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 377
Query: 1040 MLANL 1044
+ N
Sbjct: 378 NMGNT 382
Score = 37.1 bits (87), Expect = 0.037
Identities = 30/187 (16%), Positives = 53/187 (28%), Gaps = 35/187 (18%)
Query: 495 NDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLE 554
D + A + P++ + + + ++ +
Sbjct: 13 GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRS--------------AHFSTL 58
Query: 555 AARLQPVDTARAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLW- 613
A + P A A ++ + L+ +A YR AL P+ + +
Sbjct: 59 AIKQNP-LLAEAYSNLGN--------VYKERGQLQ---EAI-EHYRHALRLKPDFIDGYI 105
Query: 614 ---KAAVELEDPEDARILLSRAVECCPTSVELW----LALARLETYENARKVLNKARENI 666
A V D E A A++ P + L L E A+ KA E
Sbjct: 106 NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165
Query: 667 PTDRQIW 673
P W
Sbjct: 166 PNFAVAW 172
Score = 31.0 bits (71), Expect = 2.5
Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 8/83 (9%)
Query: 599 YRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELW----LALARLE 650
YR+A+E P+ + A E +A + A+ CPT +
Sbjct: 260 YRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319
Query: 651 TYENARKVLNKARENIPTDRQIW 673
E A ++ KA E P
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAH 342
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos
taurus}
Length = 291
Score = 54.7 bits (131), Expect = 6e-08
Identities = 34/239 (14%), Positives = 81/239 (33%), Gaps = 23/239 (9%)
Query: 883 LSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVK 942
++ A + P+S E + + R LA+ + + P+S L AV+
Sbjct: 19 INEAQRVKPSSPERDVER--------DVFLYRAYLAQRKYGVVLDEIKPSSAPE-LQAVR 69
Query: 943 L----ESENNEYERARRLLAKARASAPTPR---VMIQSAKLEWCLDNLERALQLLDEAIK 995
+ + ++ + L + + + ++ +A + + N + AL+ L +
Sbjct: 70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS 129
Query: 996 VFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLA--NLEERRKMLIK 1053
+ M QI + + LD A + + + + A +L + L
Sbjct: 130 LEC-----MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184
Query: 1054 ARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFL 1112
A + ++ + L + G + A ++ +AL + + L
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVL 243
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 50.2 bits (120), Expect = 5e-07
Identities = 17/169 (10%), Positives = 53/169 (31%), Gaps = 10/169 (5%)
Query: 887 FQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESE 946
+QA + + + E + L +ANP + E W +
Sbjct: 3 WQAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKI------RANPQNSEQWALLGEYYLW 56
Query: 947 NNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDN---LERALQLLDEAIKVFPDFAK 1002
N+Y + +A + A + + + + ++D+A+ + +
Sbjct: 57 QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEIT 116
Query: 1003 LWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKML 1051
M+ + +A + + + + + ++ ++ + +
Sbjct: 117 ALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQ 165
Score = 48.7 bits (116), Expect = 2e-06
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041
N E LQ L + I+ P ++ W + G+ +N + + QA++ + L+ L
Sbjct: 25 NPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL 84
Query: 1042 AN---LEERRKMLIKARSVLEKGRLRNPNCAE-LWLAAI 1076
A + + M + R++++K + N L L A
Sbjct: 85 ATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS 123
Score = 39.8 bits (93), Expect = 0.002
Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 19/150 (12%)
Query: 849 LQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLA---AVKLES 905
LQ + P++ W + + D + A Q + E++ A + ++
Sbjct: 33 LQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA 92
Query: 906 ENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAP 965
+ + R ++ KA A + N + Y +A L K
Sbjct: 93 SQHMTAQTRAMIDKALAL------DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146
Query: 966 T--PRVMIQSAKLEWCLDNLERALQLLDEA 993
R + ++++ A L +
Sbjct: 147 PRINRTQL--------VESINMAKLLQRRS 168
Score = 39.8 bits (93), Expect = 0.002
Identities = 17/116 (14%), Positives = 40/116 (34%), Gaps = 11/116 (9%)
Query: 599 YRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELWLALARLETYEN 654
+ + P + W + + D ++ + +A++ + EL+ ALA + Y+
Sbjct: 33 LQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQA 92
Query: 655 -------ARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSAN 703
R +++KA + A N A ++ + + S
Sbjct: 93 SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148
Score = 39.5 bits (92), Expect = 0.002
Identities = 16/107 (14%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 599 YRKALEHIPNSVRLWKAAVELEDPEDARILLSRAVECCPTSVELWLALAR----LETYEN 654
++ ++PE L + P + E W L Y N
Sbjct: 3 WQAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSN 62
Query: 655 ARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDK---IIDRALS 698
+ +A + + +++ A + + M + +ID+AL+
Sbjct: 63 SLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALA 109
Score = 38.7 bits (90), Expect = 0.005
Identities = 19/147 (12%), Positives = 42/147 (28%), Gaps = 18/147 (12%)
Query: 495 NDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLE 554
+ + L+ NP + W + + + + +L+
Sbjct: 24 QNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAA 83
Query: 555 AARL-------QPVDTARAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIP 607
A + RA+I +A+ + + A Y +A+E
Sbjct: 84 LATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN----YAQAIEL-- 137
Query: 608 NSVRLWKAAVELEDPEDARILLSRAVE 634
W+ ++L P R L ++
Sbjct: 138 -----WQKVMDLNSPRINRTQLVESIN 159
Score = 31.4 bits (71), Expect = 1.0
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 749 WMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAA---YFEKNHGTRESLETLLQK 805
W E Q Y + Y QAL ++ A Y++ + ++ K
Sbjct: 47 WALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106
Query: 806 AVAHCPK-SEVLWLMG 820
A+A L L+
Sbjct: 107 ALALDSNEITALMLLA 122
Score = 31.0 bits (70), Expect = 1.6
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 3/92 (3%)
Query: 1013 QKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
+ + I+ P + W +L + + + AEL+
Sbjct: 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY 81
Query: 1073 LAAIRVEIRAG---LKDIANTMMAKALQECPN 1101
A V + M+ KAL N
Sbjct: 82 AALATVLYYQASQHMTAQTRAMIDKALALDSN 113
Score = 29.8 bits (67), Expect = 3.7
Identities = 13/100 (13%), Positives = 30/100 (30%), Gaps = 18/100 (18%)
Query: 490 YGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSE 549
Y + + R ++ + N A + A + A
Sbjct: 90 YQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI-------------- 135
Query: 550 DLWLEAARLQPVDTARAVIAQAVRHIPTSVRIWIKAADLE 589
+LW + L R + +++ ++ + +DLE
Sbjct: 136 ELWQKVMDLNSPRINRTQLVESINM----AKLLQRRSDLE 171
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein,
peroxin 5, PEX5, PTS1 binding domain, protein-peptide
complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A
3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 51.1 bits (123), Expect = 1e-06
Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 1/134 (0%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041
NL A + + P+ + W G + + A + A P + + L
Sbjct: 36 NLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 95
Query: 1042 ANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMA-KALQECP 1100
A A + L L P +L ++ ++ ++ + A E
Sbjct: 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155
Query: 1101 NAGILWAEAIFLEP 1114
L A+ + P
Sbjct: 156 ECRTLLHAALEMNP 169
Score = 48.4 bits (116), Expect = 9e-06
Identities = 38/183 (20%), Positives = 57/183 (31%), Gaps = 30/183 (16%)
Query: 886 AFQANPNSEEIW--LAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLA-AVK 942
QA P EE W L + +EN + A L AR +P + A AV
Sbjct: 47 VCQAAPEREEAWRSLGLTQ--AENEKDGLAIIALNHAR------MLDPKDIAVHAALAVS 98
Query: 943 LESENNE------YERARRL------LAKARASAPTPRVMIQSAKLEWCLDNLER---AL 987
+E+N L A + ++
Sbjct: 99 HTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECR 158
Query: 988 QLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLW----IMLAN 1043
LL A+++ P+ A+L G + N D A +A++ P LW LAN
Sbjct: 159 TLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN 218
Query: 1044 LEE 1046
Sbjct: 219 GNR 221
Score = 41.9 bits (99), Expect = 0.001
Identities = 14/108 (12%), Positives = 28/108 (25%), Gaps = 15/108 (13%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
+ A+ L+ A + P + ++ + A + + P L
Sbjct: 68 NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGS 127
Query: 1040 MLANLEERRKML---IKARSVLEKGRLR------------NPNCAELW 1072
+ + L + R NPN A+L
Sbjct: 128 VNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175
Score = 37.7 bits (88), Expect = 0.023
Identities = 13/93 (13%), Positives = 27/93 (29%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041
++ + + + M +G + L +A F + P W L
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 1042 ANLEERRKMLIKARSVLEKGRLRNPNCAELWLA 1074
+ + A L R+ +P + A
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 94
Score = 37.3 bits (87), Expect = 0.026
Identities = 19/133 (14%), Positives = 36/133 (27%), Gaps = 21/133 (15%)
Query: 599 YRKALEHIPNSVRLWK----AAVELEDPEDARILLSRAVECCPTSVELWLALA----RLE 650
+ + P W+ E E A I L+ A P + + ALA
Sbjct: 44 FEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 103
Query: 651 TYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINRE 710
A L + P Q+ + + +D ++ +
Sbjct: 104 NANAALASLRAWLLSQPQYEQLG------------SVNLQADVDIDDLNVQSEDFFFAAP 151
Query: 711 HWFKEAIEA-EKA 722
+ ++E A
Sbjct: 152 NEYRECRTLLHAA 164
Score = 35.7 bits (83), Expect = 0.093
Identities = 36/196 (18%), Positives = 63/196 (32%), Gaps = 14/196 (7%)
Query: 846 ETLLQKAVAHCPKSEVLW-LMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLA-AVKL 903
+ P+ E W +G A L+ A +P + A AV
Sbjct: 41 ALAFEAVCQAAPEREEAWRSLGLTQAEN-EKDGLAIIALNHARMLDPKDIAVHAALAVSH 99
Query: 904 ESENNE------YERARRL---LAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERAR 954
+E+N + + + + + + NEY R
Sbjct: 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFF-AAPNEYRECR 158
Query: 955 RLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQ 1013
LL A P ++ L +N + A L A+++ PD A+LW G
Sbjct: 159 TLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN 218
Query: 1014 KNLLDKAHDTFSQAIK 1029
N +A D +++A+
Sbjct: 219 GNRPQEALDAYNRALD 234
Score = 34.6 bits (80), Expect = 0.19
Identities = 31/217 (14%), Positives = 66/217 (30%), Gaps = 42/217 (19%)
Query: 509 ETNPNHPPAWIASARLEEVTGKVQAA-RNLIMKGCEENQTSEDLWLEAARLQPVD----T 563
+ P + + + + + + E + L A + P D
Sbjct: 117 LSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHA 176
Query: 564 ARAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVRLW--KAAV--EL 619
+ V+ + + AA R+A+E P+ +LW A
Sbjct: 177 SLGVLYNLSNN-------YDSAAA----------NLRRAVELRPDDAQLWNKLGATLANG 219
Query: 620 EDPEDARILLSRAVECCPTSVELW----LALARLETYENARKVLNKA------------R 663
P++A +RA++ P V + ++ + + Y+ A K L +A
Sbjct: 220 NRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE 279
Query: 664 ENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSL 700
+ R +W L +V+ + +
Sbjct: 280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316
Score = 29.6 bits (67), Expect = 7.2
Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 8/83 (9%)
Query: 599 YRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELW----LALARLE 650
Y + + ++L + +A + + P E W L A E
Sbjct: 10 YPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENE 69
Query: 651 TYENARKVLNKARENIPTDRQIW 673
A LN AR P D +
Sbjct: 70 KDGLAIIALNHARMLDPKDIAVH 92
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A
3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 50.8 bits (122), Expect = 2e-06
Identities = 34/213 (15%), Positives = 64/213 (30%), Gaps = 9/213 (4%)
Query: 909 EYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEY-ERARRLLAKARASAPTP 967
E+ERA+ + Q EE+ + ++Y + K
Sbjct: 2 EFERAKSAIESDVDFWDKLQ--AELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEEN 59
Query: 968 RVMIQSAKLE-----WCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHD 1022
+ E +L A+ L + A++ P + W G + + A
Sbjct: 60 PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAIS 119
Query: 1023 TFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRA 1082
+ ++ P + + LA + +A +L P A L A A
Sbjct: 120 ALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 179
Query: 1083 GLKDIANTMMAKALQECPN-AGILWAEAIFLEP 1114
GL + + L+ A+ L+P
Sbjct: 180 GLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP 212
Score = 40.0 bits (94), Expect = 0.004
Identities = 21/133 (15%), Positives = 35/133 (26%), Gaps = 21/133 (15%)
Query: 599 YRKALEHIPNSVRLWK----AAVELEDPEDARILLSRAVECCPTSVELWLALA----RLE 650
+ A++ P + W+ E E A L R +E P + +ALA
Sbjct: 87 FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 146
Query: 651 TYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINRE 710
A ++L P + + L + +
Sbjct: 147 LQRQACEILRDWLRYTPAYAHLV------------TPAEEGAGGAGLGPSKRILGSLLSD 194
Query: 711 HWFKEAIEA-EKA 722
F E E A
Sbjct: 195 SLFLEVKELFLAA 207
Score = 38.1 bits (89), Expect = 0.015
Identities = 42/286 (14%), Positives = 79/286 (27%), Gaps = 27/286 (9%)
Query: 762 YECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGA 821
+E A++ + + ++ A + L A K
Sbjct: 3 FERAKSAIESDVDFWDKLQAELEEMAKRDAE--AHPWLSDYDDLTSATYDKGYQF----- 55
Query: 822 KSNKKSIWLRAAYFE----KNHGTRESLETLLQKAVAHCPKSEVLW-LMGAKSKWLAGDV 876
+ + E G + L + AV PK W +G
Sbjct: 56 EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN-EQE 114
Query: 877 PAARGILSLAFQANPNSEEIWLA-AVKLESENNE------YERARRL---LAKARAQAGA 926
A L + P+++ +A AV +E+ + R A A
Sbjct: 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEE 174
Query: 927 FQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAK--LEWCLDNL 983
L ++ + + L A PT +Q L
Sbjct: 175 GAGGAGLGPSKRILGSL-LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY 233
Query: 984 ERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK 1029
++A+ A+ V P+ LW G N ++A + +A++
Sbjct: 234 DKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE 279
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella flexneri}
PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 46.7 bits (111), Expect = 5e-06
Identities = 14/144 (9%), Positives = 43/144 (29%)
Query: 970 MIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK 1029
+ ++ + + + + L + + D K +++A F
Sbjct: 5 ITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI 64
Query: 1030 KCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIAN 1089
++V + LA + + ++ +A + N + ++R A
Sbjct: 65 YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAK 124
Query: 1090 TMMAKALQECPNAGILWAEAIFLE 1113
+Q + + +L+
Sbjct: 125 ECFELVIQHSNDEKLKIKAQSYLD 148
Score = 43.2 bits (102), Expect = 9e-05
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 5/101 (4%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041
+E A M I + K +A D ++ A +
Sbjct: 51 RIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110
Query: 1042 ANLEERRKMLIKARSVLEKGRLRNPNC-----AELWLAAIR 1077
+ R K +KA+ E + + A+ +L AI+
Sbjct: 111 GQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQ 151
Score = 40.2 bits (94), Expect = 0.001
Identities = 12/123 (9%), Positives = 33/123 (26%), Gaps = 7/123 (5%)
Query: 878 AARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIW 937
+ L + + + E A + + +
Sbjct: 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC------IYDFYNVDYI 73
Query: 938 LAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKV 996
+ + ++++A L A A A + + + + L +A + + I+
Sbjct: 74 MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133
Query: 997 FPD 999
D
Sbjct: 134 SND 136
Score = 35.2 bits (81), Expect = 0.055
Identities = 10/94 (10%), Positives = 24/94 (25%), Gaps = 8/94 (8%)
Query: 596 RRVYRKALEHIPNSVRLWK----AAVELEDPEDARILLSRAVECCPTSVELWLALA---- 647
+R + +V E + A L + A
Sbjct: 56 EVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115
Query: 648 RLETYENARKVLNKARENIPTDRQIWTTAAKLEE 681
RL+ A++ ++ ++ + L+
Sbjct: 116 RLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDA 149
Score = 33.6 bits (77), Expect = 0.14
Identities = 11/110 (10%), Positives = 31/110 (28%), Gaps = 6/110 (5%)
Query: 867 AKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGA 926
A + G + A + + + + + ++++A L A A
Sbjct: 43 AYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAV------A 96
Query: 927 FQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKL 976
F N + + +A+ + ++ I++
Sbjct: 97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSY 146
Score = 32.5 bits (74), Expect = 0.40
Identities = 9/69 (13%), Positives = 21/69 (30%), Gaps = 4/69 (5%)
Query: 749 WMEDAESCANQGAYECARAIYAQALATFPSKKSIWLRAA--YFEKNHGTRESLETLLQKA 806
M A + ++ A +YA A A + + ++ E +
Sbjct: 73 IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA-PLKAKEC-FELV 130
Query: 807 VAHCPKSEV 815
+ H ++
Sbjct: 131 IQHSNDEKL 139
Score = 30.9 bits (70), Expect = 1.3
Identities = 11/97 (11%), Positives = 27/97 (27%), Gaps = 7/97 (7%)
Query: 562 DTARAVIAQAVRHIPTSVRIWIKAADLETETKAKR---RVYRKALEHIPNSVRLW----K 614
+ A + +V + A + + + +Y A N +
Sbjct: 53 EEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112
Query: 615 AAVELEDPEDARILLSRAVECCPTSVELWLALARLET 651
+ L+ P A+ ++ A + L+
Sbjct: 113 CQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDA 149
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 45.5 bits (108), Expect = 8e-06
Identities = 16/90 (17%), Positives = 27/90 (30%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041
NL A + + P+ + W G + + A + A P + + L
Sbjct: 32 NLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91
Query: 1042 ANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071
A A + L L P +L
Sbjct: 92 AVSHTNEHNANAALASLRAWLLSQPQYEQL 121
Score = 41.3 bits (97), Expect = 2e-04
Identities = 17/98 (17%), Positives = 28/98 (28%)
Query: 1004 WMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRL 1063
M +G + L +A F +K P W L + + A L R+
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM 79
Query: 1064 RNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPN 1101
+P + A + A + L P
Sbjct: 80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117
Score = 37.4 bits (87), Expect = 0.004
Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 8/82 (9%)
Query: 599 YRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELWLALA----RLE 650
+ + P W E E A I L+ A P + + ALA
Sbjct: 40 FEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99
Query: 651 TYENARKVLNKARENIPTDRQI 672
A L + P Q+
Sbjct: 100 NANAALASLRAWLLSQPQYEQL 121
Score = 35.1 bits (81), Expect = 0.027
Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 14/112 (12%)
Query: 906 ENNEYERARRLLAKARA--QAG-----------AFQANPNSEEIWLAAVKLESENNEYER 952
NN Y + + + + Q P EE W + ++EN +
Sbjct: 10 ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGL 69
Query: 953 ARRLLAKARASAPT-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKL 1003
A L AR P V A N AL L + P + +L
Sbjct: 70 AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121
Score = 34.4 bits (79), Expect = 0.054
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 874 GDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNS 933
++ A Q P EE W + ++EN + A L AR +P
Sbjct: 31 ANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR------MLDPKD 84
Query: 934 EEIWLA-AVKLESENNEYERARRLLAKARASAP 965
+ A AV +E+N A L S P
Sbjct: 85 IAVHAALAVSHTNEHN-ANAALASLRAWLLSQP 116
Score = 31.3 bits (71), Expect = 0.66
Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 605 HIPNSVRLWKAAVELEDPEDARILLSRAVECCPTSVELW----LALARLETYENARKVLN 660
+ N + + ++L + +A + + P E W L A E A LN
Sbjct: 16 YHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALN 75
Query: 661 KARENIPTDRQIW 673
AR P D +
Sbjct: 76 HARMLDPKDIAVH 88
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat,
type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 46.1 bits (109), Expect = 9e-06
Identities = 19/151 (12%), Positives = 42/151 (27%), Gaps = 4/151 (2%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041
L + ++ D + + Q + AH F + ++ L
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 1042 ANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPN 1101
+ A G + + A ++ G A + + A + N
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Query: 1102 AGILWAEAIFLEPRPQRKTKSVDALKKCEHD 1132
E L R +++ K+ +H+
Sbjct: 122 ----XPEFXELSTRVSSMLEAIKLKKEMKHE 148
Score = 40.7 bits (95), Expect = 6e-04
Identities = 18/151 (11%), Positives = 43/151 (28%), Gaps = 11/151 (7%)
Query: 915 RLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQS 973
L + A + + ++ E + + ++ YE A + R +
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 974 AKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH 1033
+ + A+ + + + Q L +A A +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA- 120
Query: 1034 SVPLWIMLANLEERRKMLIKARSVLEKGRLR 1064
N E ++ + S+LE +L+
Sbjct: 121 ---------NXPEFXELSTRVSSMLEAIKLK 142
Score = 38.4 bits (89), Expect = 0.004
Identities = 15/127 (11%), Positives = 36/127 (28%), Gaps = 7/127 (5%)
Query: 867 AKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGA 926
A +++ +G A + + +L +Y+ A +
Sbjct: 28 AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY------G 81
Query: 927 FQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLER 985
+ A + + E A L A+ P S ++ L+ ++
Sbjct: 82 AVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAIKL 141
Query: 986 ALQLLDE 992
++ E
Sbjct: 142 KKEMKHE 148
Score = 32.2 bits (73), Expect = 0.45
Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 7/120 (5%)
Query: 496 DIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLEA 555
+ + + E + + + A + +G + A + C + +L
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 556 A----RLQPVDTARAVIAQAVRHIPTSVRIWIKAADL---ETETKAKRRVYRKALEHIPN 608
+ D A + R AA+ E A E I N
Sbjct: 62 GACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIAN 121
Score = 31.8 bits (72), Expect = 0.62
Identities = 14/102 (13%), Positives = 26/102 (25%), Gaps = 3/102 (2%)
Query: 710 EHWFKEAIEAEKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIY 769
E + A ++G + +A+ ++ G Y+ A Y
Sbjct: 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSY 78
Query: 770 AQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCP 811
+ + AA G E+ L A
Sbjct: 79 SYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 48.0 bits (115), Expect = 9e-06
Identities = 7/96 (7%), Positives = 30/96 (31%), Gaps = 3/96 (3%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKA---HDTFSQAIKKCPHSVP 1036
+N A+++ ++ + ++ + + D A +T+ +
Sbjct: 16 NNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSA 75
Query: 1037 LWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
+ + ++ A + R+ +++
Sbjct: 76 DFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111
Score = 46.9 bits (112), Expect = 2e-05
Identities = 23/130 (17%), Positives = 36/130 (27%), Gaps = 3/130 (2%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
A+Q A+ ++ G K A + I+ ++
Sbjct: 87 KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFY 146
Query: 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAE--LWLAAIRVEIRAGLK-DIANTMMAKAL 1096
L K +KA S K PN LW A K +A K +
Sbjct: 147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206
Query: 1097 QECPNAGILW 1106
+ C G +
Sbjct: 207 EVCAPGGAKY 216
Score = 39.6 bits (93), Expect = 0.005
Identities = 10/96 (10%), Positives = 32/96 (33%), Gaps = 3/96 (3%)
Query: 980 LDNLERALQLLD---EAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVP 1036
L + A + ++ + + + G+I +K A + A+ + +
Sbjct: 50 LAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD 109
Query: 1037 LWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
++ + + + A +EK +++
Sbjct: 110 MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVF 145
Score = 30.7 bits (70), Expect = 3.0
Identities = 16/145 (11%), Positives = 34/145 (23%), Gaps = 24/145 (16%)
Query: 886 AFQANPNSEEIW--LAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIW----LA 939
+ +++ L N EY +A K + PN + A
Sbjct: 134 QIRPTTTDPKVFYELGQAY--YYNKEYVKADSSFVKV------LELKPNIYIGYLWRARA 185
Query: 940 AVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLE---------WCLDNLERALQLL 990
+ + + A+ K + +E + +A
Sbjct: 186 NAAQD-PDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAW 244
Query: 991 DEAIKVFPDFAKLWMMKGQIEEQKN 1015
+ + P K E +
Sbjct: 245 KNILALDPTNKKAIDGLKMKLEHHH 269
Score = 29.9 bits (68), Expect = 4.9
Identities = 9/83 (10%), Positives = 25/83 (30%), Gaps = 8/83 (9%)
Query: 599 YRKALEHIPNSVRLWK----AAVELEDPEDARILLSRAVECCPTSVELW----LALARLE 650
Y + ++ ++ A AV+ T ++++
Sbjct: 63 YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKG 122
Query: 651 TYENARKVLNKARENIPTDRQIW 673
+ A + + K TD +++
Sbjct: 123 NFPLAIQYMEKQIRPTTTDPKVF 145
Score = 29.5 bits (67), Expect = 5.6
Identities = 12/87 (13%), Positives = 24/87 (27%), Gaps = 11/87 (12%)
Query: 598 VYRKALEHIPNSVRLW----KAAVELEDPEDARILLSR---AVECCPTSVELW----LAL 646
V+ K NS ++ EL + A+ + V + L
Sbjct: 25 VFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84
Query: 647 ARLETYENARKVLNKARENIPTDRQIW 673
+ A + A + T ++
Sbjct: 85 MKKGQDSLAIQQYQAAVDRDTTRLDMY 111
Score = 29.5 bits (67), Expect = 6.4
Identities = 24/246 (9%), Positives = 51/246 (20%), Gaps = 47/246 (19%)
Query: 829 WLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQ 888
R A F + + K A S ++ A + A+ + F
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS 65
Query: 889 A---NPNSEEIW--LAAVKLESENNE-----YERARRL----------LAKARAQAG--- 925
+ + ++ + Y+ A + G
Sbjct: 66 KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP 125
Query: 926 --------AFQANPNSEEIW--LAAVKLESENNEYERARRLLAKARASAP---------- 965
+ +++ L N EY +A K P
Sbjct: 126 LAIQYMEKQIRPTTTDPKVFYELGQAY--YYNKEYVKADSSFVKVLELKPNIYIGYLWRA 183
Query: 966 -TPRVMIQSAKLEWCLDNLERALQLL-DEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDT 1023
K E+ +++ K + + KA
Sbjct: 184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243
Query: 1024 FSQAIK 1029
+ +
Sbjct: 244 WKNILA 249
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 48.4 bits (115), Expect = 1e-05
Identities = 32/226 (14%), Positives = 60/226 (26%), Gaps = 16/226 (7%)
Query: 753 AESCANQGAYECARAIYAQALATFPSKKSIWLRAA----------YFEKNHGTRESLETL 802
+E QG + A +A + L + + E
Sbjct: 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--LDEAEAS 157
Query: 803 LQKAVAHCPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVL 862
+ + + + + L + LE LL H
Sbjct: 158 ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 217
Query: 863 WLMGAKSKWLAGDVPAARGILSLAFQA----NPNSEEIWLAAVKLESENNEYERARRLLA 918
+ + GD AA L + N + W + + E+E A +L
Sbjct: 218 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLE 277
Query: 919 KARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASA 964
+ A + + + L +L + A+R+L A A
Sbjct: 278 ELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323
Score = 47.7 bits (113), Expect = 2e-05
Identities = 39/303 (12%), Positives = 76/303 (25%), Gaps = 62/303 (20%)
Query: 753 AESCANQGAYECARAIYAQALATFPSKKSIWLRAA-------------------YFEKNH 793
A+ N G + A + AL P A ++
Sbjct: 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTE 80
Query: 794 GTRESLETLLQKAVAHCPKSEVLWLMGAKSNKKSIWLRA-AYFEKNHGTR---------- 842
+ + +SE+L+ G +A + H +
Sbjct: 81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRI 140
Query: 843 -----------ESLETLLQKAVAHCPKSEVLWLMG-----AKSKWLAGDVPAARGILSLA 886
+ E + + + + + GD+ AR L+
Sbjct: 141 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 200
Query: 887 FQANPNSEE-------IWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLA 939
N + V + A L A N + W
Sbjct: 201 ENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA--NNHFLQGQWRN 258
Query: 940 AVKLESENNEYERARRLLAKARASA-------PTPRVMIQSAKLEWCLDNLERALQLLDE 992
+ + E+E A +L + +A R ++ +L W A ++L +
Sbjct: 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318
Query: 993 AIK 995
A+K
Sbjct: 319 ALK 321
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 47.7 bits (113), Expect = 2e-05
Identities = 42/308 (13%), Positives = 90/308 (29%), Gaps = 32/308 (10%)
Query: 751 EDAESCANQGAYECARAIYAQALATFPSKKSIWLRAAYFEKNHGTRESLETLLQKAVAHC 810
+ + + + + + E ++ ++ ++K +
Sbjct: 32 RGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKTLQQM 91
Query: 811 PKSEVLWLMGAKSNKKSIWLR--AAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAK 868
+ ++G+ + + A + E+ LL KAV P+ W +
Sbjct: 92 EE-----VLGSAQVEAQALMLKGKALNVTPDYSPEAEV-LLSKAVKLEPELVEAWNQLGE 145
Query: 869 SKWLAGDVPAARGILSLAFQANPNSEEIW-LAAVKLESENNEYERARRLLAKA-RAQAGA 926
W GDV +A S A N + L+ V + + + + R + + R A
Sbjct: 146 VYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLA 205
Query: 927 FQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERA 986
Q + W Y L+ + P+ + L +A
Sbjct: 206 VQMDVLDGRSW------------YILGNAYLSLYFNTGQNPK------ISQQALSAYAQA 247
Query: 987 LQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEE 1046
++ + L + + + + + +A + FSQA P L E
Sbjct: 248 EKV----DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLE 303
Query: 1047 RRKMLIKA 1054
L
Sbjct: 304 FLSRLTSL 311
Score = 47.3 bits (112), Expect = 3e-05
Identities = 29/156 (18%), Positives = 60/156 (38%), Gaps = 14/156 (8%)
Query: 927 FQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAK-LEWCLDNLE 984
F+ + + A K + E E+ + + + SA + ++ K L D
Sbjct: 65 FETHSVED----AGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSP 120
Query: 985 RALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLW------ 1038
A LL +A+K+ P+ + W G++ +K + AH FS A+ C + V L
Sbjct: 121 EAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVL 180
Query: 1039 --IMLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
+ + +E + ++ + + + W
Sbjct: 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSW 216
Score = 43.5 bits (102), Expect = 4e-04
Identities = 30/230 (13%), Positives = 70/230 (30%), Gaps = 31/230 (13%)
Query: 866 GAKSKWLAGDVPAARGILSLAFQANPNSEEIWLA-AVKLESENNEYERARRLLAKARAQA 924
G K + + ++ + + + + L + A LL+KA
Sbjct: 74 GRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKA---- 129
Query: 925 GAFQANPNSEEIW--LAAVKLESENNEYERARRLLAKARASAPTPRVM---------IQS 973
+ P E W L V + + A + A + +Q+
Sbjct: 130 --VKLEPELVEAWNQLGEVY--WKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQT 185
Query: 974 AKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKG--------QIEEQKNLLDKAHDTFS 1025
+ ++ +++ A+++ + W + G + + +A ++
Sbjct: 186 DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA 245
Query: 1026 QAIK---KCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
QA K K + L + A L + + +A + +P E
Sbjct: 246 QAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295
Score = 41.9 bits (98), Expect = 0.001
Identities = 46/297 (15%), Positives = 94/297 (31%), Gaps = 26/297 (8%)
Query: 943 LESENNEYERARRLLAKAR--ASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF 1000
+ S ++ + + L+ + AS + M + + + + + LQ L + F
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCF 60
Query: 1001 AKLWMMKGQIEEQKNL-------LDKAHDTFSQAIKKCPHSVPLWIMLAN-LEERRKMLI 1052
+ +E+ ++K + + ++ L
Sbjct: 61 RDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSP 120
Query: 1053 KARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPNAGILWAEAIFL 1112
+A +L K P E W V + G A+T + AL C N L ++ L
Sbjct: 121 EAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVL 180
Query: 1113 --------EPRPQRKTKSVDALKKC-EHDP-----HVLLAVSKLFWCENKNQKCHRSGSR 1158
+ + SV K + D +L + L N Q S
Sbjct: 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ-- 238
Query: 1159 RCMGVKTKSVDALKKCEHDPHVLLAVSKLFWCENKNQKCREWFNRTVKIDPDLGDAW 1215
+ + ++ +K +P + L + L E + E F++ +DP +
Sbjct: 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQ 295
Score = 37.3 bits (86), Expect = 0.029
Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 29/134 (21%)
Query: 599 YRKALEHIPNSVRLW----KAAVELEDP-EDARILLSRAVECCPTSVELW----LALARL 649
+ L + KA D +A +LLS+AV+ P VE W +
Sbjct: 91 MEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKK 150
Query: 650 ETYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALSSLSANGVEINR 709
+A + A + + N +MV + +
Sbjct: 151 GDVTSAHTCFSGALTHCKNK-----------VSLQNLSMVLRQL--------QTDSGDEH 191
Query: 710 EHWFKEAIEA-EKA 722
+++ + A
Sbjct: 192 SRHVMDSVRQAKLA 205
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 44.7 bits (106), Expect = 2e-05
Identities = 16/131 (12%), Positives = 37/131 (28%), Gaps = 1/131 (0%)
Query: 926 AFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-PRVMIQSAKLEWCLDNLE 984
+ ++ E A + + +++ A+++ R + L E
Sbjct: 10 LRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYE 69
Query: 985 RALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANL 1044
+ALQ + + + + Q LD A F A + A
Sbjct: 70 QALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129
Query: 1045 EERRKMLIKAR 1055
+ + +
Sbjct: 130 GAMLEAVTARK 140
Score = 44.3 bits (105), Expect = 3e-05
Identities = 13/99 (13%), Positives = 27/99 (27%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041
+ A ++ + A+ ++ G + L ++A ++S +
Sbjct: 33 KWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92
Query: 1042 ANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEI 1080
A + L A S R A R
Sbjct: 93 AECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131
Score = 41.7 bits (98), Expect = 3e-04
Identities = 17/112 (15%), Positives = 30/112 (26%)
Query: 990 LDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRK 1049
L + D + G + Q D A F + ++ L +
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 1050 MLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQECPN 1101
+ +A G L + N A ++ G D A + A
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118
Score = 35.1 bits (81), Expect = 0.042
Identities = 14/98 (14%), Positives = 24/98 (24%), Gaps = 11/98 (11%)
Query: 596 RRVYRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELWLALA---- 647
+++++ R + L E A S A
Sbjct: 38 QKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97
Query: 648 RLETYENARKVLNKARE---NIPTDRQIWTTAAKLEEA 682
+L + A AR P + A + EA
Sbjct: 98 QLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEA 135
Score = 34.3 bits (79), Expect = 0.091
Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 7/138 (5%)
Query: 849 LQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENN 908
L + +++ AG A+ I + +L
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 909 EYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPT-P 967
YE+A + + + N A + + + + A ARA A P
Sbjct: 67 LYEQALQSYSY------GALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120
Query: 968 RVMIQSAKLEWCLDNLER 985
+A+ L+ +
Sbjct: 121 AHEALAARAGAMLEAVTA 138
Score = 33.9 bits (78), Expect = 0.100
Identities = 12/108 (11%), Positives = 28/108 (25%), Gaps = 8/108 (7%)
Query: 599 YRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELWLALA----RLE 650
+++ + +DA+ + +L L L
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 651 TYENARKVLNKARENIPTDRQIWTTAAKLEEAHGNNAMVDKIIDRALS 698
YE A + + + + AA+ G+ + A +
Sbjct: 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 46.4 bits (111), Expect = 3e-05
Identities = 15/93 (16%), Positives = 40/93 (43%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
+ E+A + +AI+ + A ++ + N L++A + +A++ + +
Sbjct: 36 FGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYY 95
Query: 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
N+ ++M +A+ + EK +L+
Sbjct: 96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLF 128
Score = 43.7 bits (104), Expect = 2e-04
Identities = 22/93 (23%), Positives = 42/93 (45%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
++ LERAL D+A+++ A + G + K + +A D F +A++ + L+
Sbjct: 70 VNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFY 129
Query: 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
ML + + + A L++ N N E
Sbjct: 130 MLGTVLVKLEQPKLALPYLQRAVELNENDTEAR 162
Score = 40.2 bits (95), Expect = 0.002
Identities = 16/93 (17%), Positives = 35/93 (37%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
L+ + AL L A+++ + + G + +LD+A F+ ++ P +
Sbjct: 138 LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFY 197
Query: 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
++ KA +L+K P+
Sbjct: 198 NAGVTYAYKENREKALEMLDKAIDIQPDHMLAL 230
Score = 39.4 bits (93), Expect = 0.004
Identities = 16/94 (17%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 983 LERALQLLDEAIKVFPDFAKLWMMKG----QIEEQKNLLDKAHDTFSQAIKKCPHSVPLW 1038
+ + + + P + + M G + +KA + F++AI++ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 1039 IMLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
I ANL L +A + +K + + A +
Sbjct: 61 INFANLLSSVNELERALAFYDKALELDSSAATAY 94
Score = 37.9 bits (89), Expect = 0.015
Identities = 13/93 (13%), Positives = 33/93 (35%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
+ + A + ++A++ + L+ M G + + A +A++ +
Sbjct: 104 KEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARF 163
Query: 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
ML +A S ++P A+ +
Sbjct: 164 QFGMCLANEGMLDEALSQFAAVTEQDPGHADAF 196
Score = 32.5 bits (75), Expect = 0.68
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 12/76 (15%)
Query: 599 YRKALEHIPNSVRLW--------KAAVELEDPEDARILLSRAVECCPTSVELW----LAL 646
+ + +P + E D E A ++A+E + L
Sbjct: 8 HHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLL 67
Query: 647 ARLETYENARKVLNKA 662
+ + E A +KA
Sbjct: 68 SSVNELERALAFYDKA 83
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus
RIMD 22 structural genomics, PSI-2, protein structure
initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Length = 176
Score = 45.0 bits (106), Expect = 4e-05
Identities = 26/136 (19%), Positives = 49/136 (36%), Gaps = 5/136 (3%)
Query: 867 AKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGA 926
G+ A ++ + ++ LA E ++E A+ LLA
Sbjct: 13 VSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL---- 68
Query: 927 FQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERA 986
+ NS + +A ++L + E +RL + A+ + + A + E A
Sbjct: 69 -EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEA 127
Query: 987 LQLLDEAIKVFPDFAK 1002
L+LL +KV
Sbjct: 128 LELLWNILKVNLGAQD 143
Score = 32.2 bits (73), Expect = 0.60
Identities = 16/117 (13%), Positives = 41/117 (35%)
Query: 495 NDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAARNLIMKGCEENQTSEDLWLE 554
+ +A +++++ + + +A A T + + A+ L+ E Q + L
Sbjct: 20 GEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLI 79
Query: 555 AARLQPVDTARAVIAQAVRHIPTSVRIWIKAADLETETKAKRRVYRKALEHIPNSVR 611
A A + + + + + A + +ALE + N ++
Sbjct: 80 AKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK 136
Score = 29.2 bits (65), Expect = 5.7
Identities = 8/69 (11%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Query: 614 KAAVELEDPEDARILLSRAVECCPTSVELWLALARLET----YENARKVLNKARENIPTD 669
++ + A ++ + + ++ LA A +E A+++L +
Sbjct: 14 SELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDN 73
Query: 670 RQIWTTAAK 678
A
Sbjct: 74 SYKSLIAKL 82
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 46.2 bits (110), Expect = 5e-05
Identities = 28/212 (13%), Positives = 62/212 (29%), Gaps = 11/212 (5%)
Query: 908 NEYERARRLLAKARAQAGAFQA--NPNSEEIWLAAVKLESENNEYERARRLLAKARASAP 965
E+ERA+ + QA + W++ + + + +
Sbjct: 3 MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPF 62
Query: 966 T-PRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTF 1024
+ +L + ++ AI P A+ W G + + A
Sbjct: 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVAL 122
Query: 1025 SQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELW--LAAIRVEIRA 1082
+ ++ P+++ + LA A L+ +NP L R
Sbjct: 123 QRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRR 182
Query: 1083 GLKDIANTMMAKALQECPNAGILWAEAIFLEP 1114
K ++ + + ++E + EA
Sbjct: 183 MSKSPVDSSVLEGVKEL------YLEAAHQNG 208
Score = 40.4 bits (95), Expect = 0.003
Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 28/152 (18%)
Query: 599 YRKALEHIPNSVRLWK----AAVELEDPEDARILLSRAVECCPTSVELWLALA----RLE 650
A+ P W+ E E+ + A + L R +E P +++ +ALA
Sbjct: 88 MEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147
Query: 651 TYENARKVLNKARENIPTDRQIW-------TTAAKLEEAHGNNAMVDKIIDRALSSLSAN 703
++A + L + P + + ++ ++ ++++++ + + L + N
Sbjct: 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207
Query: 704 GVEINREHW------------FKEAIEA-EKA 722
G I+ + F AI+A A
Sbjct: 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAA 239
Score = 36.2 bits (84), Expect = 0.061
Identities = 54/332 (16%), Positives = 97/332 (29%), Gaps = 46/332 (13%)
Query: 829 WLRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLMGAKSKWLAGDVPAARGILSLAFQ 888
W+ +N T + E + K + GD+P + A
Sbjct: 34 WISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAIL 93
Query: 889 ANPNSEEIW--LAAVKLESENNE-----YERARRL----------LAKARAQAG------ 925
+P E W L + E+EN + +R L LA +
Sbjct: 94 QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDAC 153
Query: 926 -----AFQANPNSEEIW----LAAVKLE------SENNEYERARRLLAKARASAPTPR-V 969
+ NP + + + +++ E + L +A
Sbjct: 154 EALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDP 213
Query: 970 MIQSAK--LEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQA 1027
+Q+ L RA+ + A+ V P+ LW G + ++A + +++A
Sbjct: 214 DLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRA 273
Query: 1028 IKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELW---LAAIRVEIRAGL 1084
++ P + L +A S AI I A L
Sbjct: 274 LEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAAL 333
Query: 1085 KDIANTMMAKALQECPNAGILWA--EAIFLEP 1114
+ + M L + N G L A L+P
Sbjct: 334 RIALSLMDQPELFQAANLGDLDVLLRAFNLDP 365
Score = 29.3 bits (66), Expect = 9.5
Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 8/72 (11%)
Query: 599 YRKALEHIPNSVRLW--KAAV--ELEDPEDARILLSRAVECCPTSVELW----LALARLE 650
+ AL P LW A + E+A +RA+E P + ++ L
Sbjct: 236 FNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295
Query: 651 TYENARKVLNKA 662
Y A A
Sbjct: 296 AYREAVSNFLTA 307
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 44.5 bits (106), Expect = 9e-05
Identities = 18/93 (19%), Positives = 36/93 (38%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
+ A++ E IK P+ A+ + + + +A ++AI+K P+ V +I
Sbjct: 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI 211
Query: 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
A + K A L+ R ++
Sbjct: 212 RKATAQIAVKEYASALETLDAARTKDAEVNNGS 244
Score = 37.5 bits (88), Expect = 0.019
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
L N E+ L+ + V P+ A+ ++G+ K+ A +++ IK+ P +
Sbjct: 118 LRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYS 177
Query: 1040 MLAN 1043
A
Sbjct: 178 NRAA 181
Score = 36.4 bits (85), Expect = 0.047
Identities = 11/93 (11%), Positives = 30/93 (32%), Gaps = 1/93 (1%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
+ A++ ++A ++ D + E +K + A T + A+++ +
Sbjct: 18 ARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK 76
Query: 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
+++ R L+K
Sbjct: 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH 109
Score = 29.4 bits (67), Expect = 7.0
Identities = 11/82 (13%), Positives = 21/82 (25%), Gaps = 7/82 (8%)
Query: 599 YRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELW---LALARLET 651
A+E + K+ + + L + +E S+ L +L
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRN 120
Query: 652 YENARKVLNKARENIPTDRQIW 673
E K P +
Sbjct: 121 AEKELKKAEAEAYVNPEKAEEA 142
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 41.5 bits (98), Expect = 1e-04
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032
DN RAL L +E ++ PD+ + G++ E+ + D A DT++Q I+
Sbjct: 20 HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72
Score = 36.1 bits (84), Expect = 0.009
Identities = 12/73 (16%), Positives = 21/73 (28%)
Query: 998 PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSV 1057
P+ Q + + +A F + ++ P V + L L ER A
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 1058 LEKGRLRNPNCAE 1070
+G
Sbjct: 64 YAQGIEVAREEGT 76
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 44.7 bits (105), Expect = 2e-04
Identities = 22/174 (12%), Positives = 46/174 (26%), Gaps = 9/174 (5%)
Query: 846 ETLLQKAVAHCPKSEVLW--LMGAKSKWLAGDVPA---ARGILSLAFQANPNSEEIW--- 897
+ + + P L A L GD + A +L Q++P
Sbjct: 180 QRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEK 239
Query: 898 -LAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRL 956
L + S++ E+ L N I+ + + + +
Sbjct: 240 ALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQA 299
Query: 957 LAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQI 1010
+ + + K+ A A + P L+ ++ I
Sbjct: 300 INTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGI 353
Score = 43.9 bits (103), Expect = 3e-04
Identities = 20/142 (14%), Positives = 44/142 (30%), Gaps = 12/142 (8%)
Query: 981 DNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNL--------LDKAHDTFSQA--IKK 1030
+L RA +LL E ++ P+F K ++ ++ L + + +
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272
Query: 1031 CPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANT 1090
+ ++ + A + ++ + G + L +V G+ A
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLG-KVYEMKGMNREAAD 331
Query: 1091 MMAKALQECP-NAGILWAEAIF 1111
A P + W E
Sbjct: 332 AYLTAFNLRPGANTLYWIENGI 353
Score = 29.3 bits (65), Expect = 8.1
Identities = 23/193 (11%), Positives = 50/193 (25%), Gaps = 22/193 (11%)
Query: 475 DPKGYLTDLQSMIPTYGGDINDIKKARLLLKSVRETNPNHPPAWIASARLEEVTGKVQAA 534
Q+ GD + +A LL + +++P A A ++ V
Sbjct: 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPL 252
Query: 535 RNLIMKGCEENQTSEDLWLEAARLQPVDTARAVIAQAVRHIPTSVRIWIKAADLETETKA 594
E+ + + ++ P ++I Q ++
Sbjct: 253 D-------EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDES--------- 296
Query: 595 KRRVYRKALEHIPNS---VRLWKAAVELEDPEDARILLSRAVECCPTSVELWLA--LARL 649
+ ++ + V L K +A A P + L+
Sbjct: 297 -YQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIFQ 355
Query: 650 ETYENARKVLNKA 662
+ L+K
Sbjct: 356 TSVPYVVPYLDKF 368
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 42.1 bits (100), Expect = 4e-04
Identities = 13/93 (13%), Positives = 33/93 (35%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
+A+ LL++ + + G + +D+ + +++ P +V +
Sbjct: 21 AGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVAT 80
Query: 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
+L + + A +L K NP +
Sbjct: 81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVR 113
Score = 37.0 bits (87), Expect = 0.015
Identities = 15/93 (16%), Positives = 33/93 (35%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
+ + A+ LL + + P + G + D+A D+F A+ P+ +
Sbjct: 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHR 148
Query: 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
+A E+ +A +K + +
Sbjct: 149 AIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181
Score = 28.6 bits (65), Expect = 9.1
Identities = 9/75 (12%), Positives = 22/75 (29%)
Query: 998 PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSV 1057
+ KG + +A Q V + + L + + + +
Sbjct: 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64
Query: 1058 LEKGRLRNPNCAELW 1072
LE+ P+ ++
Sbjct: 65 LERSLADAPDNVKVA 79
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 43.1 bits (101), Expect = 5e-04
Identities = 37/230 (16%), Positives = 73/230 (31%), Gaps = 17/230 (7%)
Query: 830 LRAAYFEKNHGTRESLETLLQKAVAHCPKSEVLWLM-GAKSKWLAGDVPAARGILSLAFQ 888
RA R L + A+ + +W K L D+ ++ +
Sbjct: 103 FRAVLQRDERSER--AFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE 160
Query: 889 ANPNSEEIWLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIW----LAAVKLE 944
P + ++W L + + +A + + W + +
Sbjct: 161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADI------LNQDAKNYHAWQHRQWVIQEFK 214
Query: 945 SENNEYERARRLLAK--ARASAPTPR-VMIQSAKLEWCLDNLERALQLLDEAIKVFPDFA 1001
+NE + +LL + S R +I + LER +Q E IK+ P
Sbjct: 215 LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNE 274
Query: 1002 KLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKML 1051
W I + + L K + +Q + P +++ ++ ML
Sbjct: 275 SAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDML 323
Score = 40.8 bits (95), Expect = 0.002
Identities = 19/123 (15%), Positives = 44/123 (35%), Gaps = 1/123 (0%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQ-KNLLDKAHDTFSQAIKKCPHSVPLW 1038
+ ERA +L +AI++ +W + + + + L + + + I++ P + +W
Sbjct: 110 DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169
Query: 1039 IMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQE 1098
L E + + + ++ W V L D + + L+E
Sbjct: 170 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE 229
Query: 1099 CPN 1101
Sbjct: 230 DVR 232
Score = 35.8 bits (82), Expect = 0.093
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 993 AIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLAN-LEERRKML 1051
I F ++ + ++ ++A AI+ + +W L+ +K L
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 148
Query: 1052 IKARSVLEKGRLRNPNCAELW 1072
+ + + P ++W
Sbjct: 149 HEEMNYITAIIEEQPKNYQVW 169
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2,
protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 40.0 bits (94), Expect = 6e-04
Identities = 14/79 (17%), Positives = 24/79 (30%)
Query: 983 LERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLA 1042
++ + L+ + D L G+ + D A A+ P W L
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 1043 NLEERRKMLIKARSVLEKG 1061
+ + AR E G
Sbjct: 61 KTLQGQGDRAGARQAWESG 79
Score = 38.1 bits (89), Expect = 0.003
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK 1029
+ + AL L A+ P ++ W G+ + + A + +
Sbjct: 32 HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81
Score = 35.4 bits (82), Expect = 0.022
Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 8/74 (10%)
Query: 599 YRKALEHIPNSVRLW----KAAVELEDPEDARILLSRAVECCPTSVELWL----ALARLE 650
L +++ L K E E + A L A++ PT W L
Sbjct: 8 LEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG 67
Query: 651 TYENARKVLNKARE 664
AR+
Sbjct: 68 DRAGARQAWESGLA 81
Score = 29.6 bits (67), Expect = 2.1
Identities = 10/92 (10%), Positives = 22/92 (23%)
Query: 1017 LDKAHDTFSQAIKKCPHSVPLWIMLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAI 1076
+ + + + ++ L L + A L +P + W
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLG 60
Query: 1077 RVEIRAGLKDIANTMMAKALQECPNAGILWAE 1108
+ G + A L + G
Sbjct: 61 KTLQGQGDRAGARQAWESGLAAAQSRGDQQVV 92
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle
checkpoint, TPR motif, all-alpha domain, MAD3-like
domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Length = 202
Score = 40.4 bits (94), Expect = 0.001
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Query: 983 LERALQLL--DEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKK--CPHSVPLW 1038
+ER L + E + P F K+W+ + N ++ +TF K +
Sbjct: 60 MERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNF-HESENTFKYMFNKGIGTKLSLFY 118
Query: 1039 IMLANLEERRKMLIKARSVLEKGRLRN 1065
+ L E + ++A+ +LE G N
Sbjct: 119 EEFSKLLENAQFFLEAKVLLELGAENN 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat,
HSP70, protein binding, chaperone; 1.60A {Homo sapiens}
SCOP: a.118.8.1
Length = 118
Score = 38.3 bits (90), Expect = 0.002
Identities = 15/68 (22%), Positives = 32/68 (47%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
+ ++A + + + + PD+ K + K E N ++A T+ + +K ++ L
Sbjct: 51 KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKE 110
Query: 1040 MLANLEER 1047
L N+E R
Sbjct: 111 GLQNMEAR 118
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 39.8 bits (94), Expect = 0.002
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 15/106 (14%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
L + AL L + A+K P + + + + L++ A + + + P + ++
Sbjct: 18 LGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYM 77
Query: 1040 MLAN-LEERRKMLIKARSVLEKGRLR------------NPNCAELW 1072
+L+ + KG L NP A L
Sbjct: 78 VLSEAYVALYRQAEDRER--GKGYLEQALSVLKDAERVNPRYAPLH 121
Score = 36.7 bits (86), Expect = 0.026
Identities = 9/54 (16%), Positives = 18/54 (33%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH 1033
+ L+ AL +A++ P L + K ++A + H
Sbjct: 164 MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217
Score = 35.2 bits (82), Expect = 0.071
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK 1029
LE+AL +L +A +V P +A L + +G + DKA + QA+
Sbjct: 99 YLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALA 146
Score = 31.0 bits (71), Expect = 2.0
Identities = 13/88 (14%), Positives = 35/88 (39%), Gaps = 1/88 (1%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
L ++A L +A+ D ++ ++ LD+A +++A+++ P + L +
Sbjct: 131 LGERDKAEASLKQALA-LEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRV 189
Query: 1040 MLANLEERRKMLIKARSVLEKGRLRNPN 1067
A+ + +A + +
Sbjct: 190 RYASALLLKGKAEEAARAAALEHHHHHH 217
Score = 29.8 bits (68), Expect = 4.4
Identities = 15/86 (17%), Positives = 25/86 (29%), Gaps = 11/86 (12%)
Query: 980 LDNLERALQLLDEAIKVFPDFA-----------KLWMMKGQIEEQKNLLDKAHDTFSQAI 1028
L + AL+ + P + L+ E K L++A A
Sbjct: 52 LGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAE 111
Query: 1029 KKCPHSVPLWIMLANLEERRKMLIKA 1054
+ P PL + + KA
Sbjct: 112 RVNPRYAPLHLQRGLVYALLGERDKA 137
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX,
D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 223
Score = 40.1 bits (93), Expect = 0.002
Identities = 20/87 (22%), Positives = 32/87 (36%), Gaps = 10/87 (11%)
Query: 983 LERALQLL--DEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKK--CPHSVPLW 1038
LER + + K + ++WM N +D+ + FS S +
Sbjct: 100 LERCTREFVRNPLYKDDVRYLRIWMQYV------NYIDEPVELFSFLAHHHIGQESSIFY 153
Query: 1039 IMLANLEERRKMLIKARSVLEKGRLRN 1065
AN E R + KA V +KG+
Sbjct: 154 EEYANYFESRGLFQKADEVYQKGKRMK 180
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus interaction;
2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 38.3 bits (90), Expect = 0.002
Identities = 15/70 (21%), Positives = 29/70 (41%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
L N A+Q + AI + P ++K + G N +A + +A++ P +
Sbjct: 59 LGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKS 118
Query: 1040 MLANLEERRK 1049
L E + +
Sbjct: 119 NLKIAELKLR 128
Score = 32.2 bits (74), Expect = 0.42
Identities = 14/91 (15%), Positives = 30/91 (32%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041
N E A+ +AI++ P A + + + A +AI P + +
Sbjct: 27 NFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86
Query: 1042 ANLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
++A + +K +P+
Sbjct: 87 GLALSSLNKHVEAVAYYKKALELDPDNETYK 117
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle,
transferase, spindle assembly checkpoint, mitosi repeat,
KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Length = 152
Score = 38.3 bits (89), Expect = 0.004
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 10/87 (11%)
Query: 983 LERALQLL--DEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKK--CPHSVPLW 1038
LE ++ + P F + H F S PL+
Sbjct: 51 LEHLMKEFLDKKKYHNDPRFISYCLKFA------EYNSDLHQFFEFLYNHGIGTLSSPLY 104
Query: 1039 IMLANLEERRKMLIKARSVLEKGRLRN 1065
I A E + L A +VL++G
Sbjct: 105 IAWAGHLEAQGELQHASAVLQRGIQNQ 131
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat,
protein transport; 2.90A {Saccharomyces cerevisiae} SCOP:
a.118.8.1
Length = 292
Score = 38.8 bits (90), Expect = 0.008
Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 8/111 (7%)
Query: 899 AAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLA 958
LE++ ++Y +A A Q+ S + ++ L++ + +Y A + +
Sbjct: 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS 182
Query: 959 KARASAPTPRVMIQSAKLEW--------CLDNLERALQLLDEAIKVFPDFA 1001
K S+ R+ S K + + A + L E P+FA
Sbjct: 183 KLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 38.7 bits (90), Expect = 0.009
Identities = 19/153 (12%), Positives = 42/153 (27%), Gaps = 12/153 (7%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
+ E+AL A+++ K GQ + + D+A +A +
Sbjct: 51 MQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110
Query: 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQEC 1099
R + S+ E+ + E+ + L + + L+EC
Sbjct: 111 DDIPSALRIAKKKRWNSIEERRIHQES------------ELHSYLTRLIAAERERELEEC 158
Query: 1100 PNAGILWAEAIFLEPRPQRKTKSVDALKKCEHD 1132
+ + + D +
Sbjct: 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDE 191
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 38.4 bits (90), Expect = 0.011
Identities = 21/134 (15%), Positives = 42/134 (31%), Gaps = 5/134 (3%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
L A +A+ + PD +++ G Q D A++ F ++ P +
Sbjct: 56 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHL 115
Query: 1040 MLANLEERRKMLIKARSVLEKGRLRNPNCAE--LWLAAIRVEIRAGLKDIANTMMAKALQ 1097
A+ L +PN LWL ++ + A ++ + +
Sbjct: 116 NRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLD---EKQAKEVLKQHFE 172
Query: 1098 ECPNAGILWAEAIF 1111
+ W F
Sbjct: 173 KSDKEQWGWNIVEF 186
Score = 36.9 bits (86), Expect = 0.028
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 981 DNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIM 1040
L R Q+L + A+L +G + + L A + FSQA+ P ++
Sbjct: 23 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY 82
Query: 1041 LANLEERRKMLIKA----RSVLEKGRLRNPNCAELWL 1073
L + A SVLE +P L
Sbjct: 83 LGIYLTQAGNFDAAYEAFDSVLE----LDPTYNYAHL 115
Score = 35.7 bits (83), Expect = 0.067
Identities = 9/54 (16%), Positives = 16/54 (29%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPH 1033
+ER + + ++ G+ LD A F A+ H
Sbjct: 194 QTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247
Score = 31.5 bits (72), Expect = 1.4
Identities = 13/90 (14%), Positives = 26/90 (28%), Gaps = 1/90 (1%)
Query: 983 LERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLA 1042
E Q +++ K + + G I EQ L+++ + H L
Sbjct: 164 KEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ-TLMERLKADATDNTSLAEHLSETNFYLG 222
Query: 1043 NLEERRKMLIKARSVLEKGRLRNPNCAELW 1072
L A ++ + N +
Sbjct: 223 KYYLSLGDLDSATALFKLAVANNVHNFVEH 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 37.6 bits (87), Expect = 0.016
Identities = 27/133 (20%), Positives = 51/133 (38%), Gaps = 5/133 (3%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041
L++AL+LL EAIK P A L ++ ++A + Q+IK P +P L
Sbjct: 12 QLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQL 71
Query: 1042 ANL---EERRKMLIKARSVLEKGRLRNPNCAELWLAAIRVEIRAGLKDIANTMMAKALQE 1098
+L + RK + + L L + + + + + + + + +
Sbjct: 72 RHLVKAAQARKDFAQGAA--TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129
Query: 1099 CPNAGILWAEAIF 1111
G L + F
Sbjct: 130 RQEKGFLANDTSF 142
Score = 33.8 bits (77), Expect = 0.28
Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 29/138 (21%)
Query: 873 AGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRLLAKA------------ 920
G + A +L A +A+P + + ++L + ++ERA L ++
Sbjct: 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGAS 69
Query: 921 -----------RAQAGAFQANP---NSEEIWLAAV---KLESENNEYERARRLLAKARAS 963
R A E ++ L + +YE+ L +
Sbjct: 70 QLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129
Query: 964 APTPRVMIQSAKLEWCLD 981
+ D
Sbjct: 130 RQEKGFLANDTSFSDVRD 147
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB:
1wm5_A 1e96_B*
Length = 213
Score = 37.0 bits (86), Expect = 0.019
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Query: 990 LDEAIKVF----PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANL 1044
A+ F +++ G + + +A F+++I + H + L
Sbjct: 22 WKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGML 80
Score = 33.2 bits (76), Expect = 0.33
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK 1029
L N+ A + +I A + +G + Q D A +A+
Sbjct: 50 LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALI 99
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 35.1 bits (82), Expect = 0.028
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032
N ++ L ++AI++ P+ +K W+MKG+ ++A D ++ I
Sbjct: 19 AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE 71
Score = 31.7 bits (73), Expect = 0.41
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 978 WCLDNLER---ALQLLDEAIKVFPDF--AKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032
L NLER A+ + I V D +W K + + K
Sbjct: 48 KALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH 107
Query: 1033 H 1033
H
Sbjct: 108 H 108
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor
suppressor, TPR, apoptosis, cell division, cell cycle,
kinetochore, transferase; 1.80A {Homo sapiens} PDB:
3si5_A
Length = 164
Score = 36.0 bits (83), Expect = 0.031
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 983 LERALQLL--DEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKK--CPHSVPLW 1038
LERA++ L ++ P F LW+ G L ++ D +S + +
Sbjct: 46 LERAVEALQGEKRYYSDPRFLNLWLKLG------RLCNEPLDMYSYLHNQGIGVSLAQFY 99
Query: 1039 IMLANLEERRKMLIKARSVLEKGRLRN 1065
I A E R+ KA ++ ++G +
Sbjct: 100 ISWAEEYEARENFRKADAIFQEGIQQK 126
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats,
isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1
d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 37.4 bits (86), Expect = 0.031
Identities = 16/112 (14%), Positives = 40/112 (35%), Gaps = 11/112 (9%)
Query: 948 NEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNL----------ERALQLLDEAIKVF 997
+Y + L + +S L NL +A++ D+A+ +
Sbjct: 289 IQYGKIVSWLEMEYGLSEKESKASESFLLA-AFLNLAMCYLKLREYTKAVECCDKALGLD 347
Query: 998 PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANLEERRK 1049
K +G+ + N + A F + ++ P + + ++ +++ K
Sbjct: 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK 399
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 34.7 bits (80), Expect = 0.035
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 980 LDNLERALQLLDEAIKVF---PDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVP 1036
L +A+ ++AI D A+ ++ G KA + +K+ P+
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 1037 LWIMLANLEERRKMLIKARSVLEKGRLRNPNCAEL 1071
L + A + + +L K + +
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI 97
Score = 33.9 bits (78), Expect = 0.087
Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 950 YERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQ 1009
YE+A +A + L +A +L +K FP+ L +
Sbjct: 13 YEKA---IASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAM 69
Query: 1010 IEEQKNLLDKAHDTFSQAIKKCPHS 1034
+ ++ + + I +
Sbjct: 70 VLYNLGRYEQGVELLLKIIAETSDD 94
Score = 33.2 bits (76), Expect = 0.14
Identities = 18/85 (21%), Positives = 28/85 (32%), Gaps = 11/85 (12%)
Query: 599 YRKALEHIPNSVRLWKAAV-------ELEDPEDARILLSRAVECCPTSVELW----LALA 647
Y KA+ L + + L + A +L+ V+ P L + L
Sbjct: 13 YEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY 72
Query: 648 RLETYENARKVLNKARENIPTDRQI 672
L YE ++L K D I
Sbjct: 73 NLGRYEQGVELLLKIIAETSDDETI 97
Score = 29.7 bits (67), Expect = 2.3
Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 16/106 (15%)
Query: 713 FKEAIEA-EKAGSVHTCQALIRAIIGYGVEQEDRKHTWMEDAESCANQGAYECARAIYAQ 771
+A+ EKA I G++ +D ++ + G Y A A+ A
Sbjct: 6 EAQAVPYYEKA-------------IASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLAN 52
Query: 772 ALATFPSKKSIWLRAAYFEKNHG-TRESLETLLQKAVAHCPKSEVL 816
+ FP+ +++ + A N G + +E LL+ +A E +
Sbjct: 53 GVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLK-IIAETSDDETI 97
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 33.9 bits (78), Expect = 0.051
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 982 NLERALQLLDEAIKVFP-DFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS 1034
++E ALQ L+E ++ P + + + G + KA + + AI+ P S
Sbjct: 15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS 68
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 34.5 bits (80), Expect = 0.061
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS 1034
L + AL+ +E I++ P F K + K E KA D + +A+
Sbjct: 63 LLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 34.1 bits (79), Expect = 0.066
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032
L +RAL D I++ F K ++ K KA + A++ P
Sbjct: 60 LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDP 112
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.071
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 984 ERALQLLDEAIKVF-PDFAKLWMMKGQIE 1011
++AL+ L ++K++ D A +K +E
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKATME 47
Score = 32.6 bits (73), Expect = 0.37
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 495 NDIKKARLLLKSVRETNPNHPPAWIASARLE 525
+KK L S++ + PA A +E
Sbjct: 20 QALKK---LQASLKLYADDSAPALAIKATME 47
Score = 30.7 bits (68), Expect = 1.7
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 8/28 (28%)
Query: 1026 QAIKKC--------PHSVPLWIMLANLE 1045
QA+KK S P + A +E
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATME 47
Score = 29.1 bits (64), Expect = 6.1
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 24/52 (46%)
Query: 600 RKALEHIPNSVRLWKAAVELEDPEDARILLSRAVECCPTSVELWLAL-ARLE 650
++AL+ + S++L+ + A P LA+ A +E
Sbjct: 19 KQALKKLQASLKLY-------ADDSA-----------PA-----LAIKATME 47
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 33.8 bits (78), Expect = 0.11
Identities = 13/76 (17%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
+ E+AL A+++ K GQ + + D+A +A
Sbjct: 56 MQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR---- 111
Query: 1040 MLANLEERRKMLIKAR 1055
L ++ L A+
Sbjct: 112 -LNFGDDIPSALRIAK 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 33.9 bits (78), Expect = 0.15
Identities = 11/78 (14%), Positives = 23/78 (29%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
+ AL AI++ + K + + A + +K PH +
Sbjct: 60 TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 119
Query: 1040 MLANLEERRKMLIKARSV 1057
+ K R++
Sbjct: 120 KYQECNKIVKQKAFERAI 137
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.0 bits (77), Expect = 0.18
Identities = 8/43 (18%), Positives = 22/43 (51%)
Query: 150 EEADMIYEEIDKRMDEKRKDYREKRLREELERYRQERPKIQQQ 192
EE +E+D +++REK ++ E +++ ++++
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Score = 34.0 bits (77), Expect = 0.18
Identities = 8/43 (18%), Positives = 22/43 (51%)
Query: 319 EEADMIYEEIDKRMDEKRKDYREKRLREELERYRQERPKIQQQ 361
EE +E+D +++REK ++ E +++ ++++
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Score = 29.0 bits (64), Expect = 7.5
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 146 DKDDEEA---DMIYEEIDKRMDEKRKDYREKRLREELERYRQERPKIQQQFSDL 196
+ D E+ K ++E + E+ + ++ ++ QQ +D+
Sbjct: 100 ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
Score = 29.0 bits (64), Expect = 7.5
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 315 DKDDEEA---DMIYEEIDKRMDEKRKDYREKRLREELERYRQERPKIQQQFSDL 365
+ D E+ K ++E + E+ + ++ ++ QQ +D+
Sbjct: 100 ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein;
2.85A {Arabidopsis thaliana}
Length = 338
Score = 34.6 bits (79), Expect = 0.20
Identities = 15/70 (21%), Positives = 27/70 (38%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
L + A+ + + K +G+ + + +D A D F +A K P +
Sbjct: 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRR 302
Query: 1040 MLANLEERRK 1049
L L E+ K
Sbjct: 303 ELRALAEQEK 312
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 33.2 bits (76), Expect = 0.29
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 1/81 (1%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
E+A + + A V P ++K W G A + + + I+ +
Sbjct: 58 SGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDA- 116
Query: 1040 MLANLEERRKMLIKARSVLEK 1060
M LE ++ + +A E
Sbjct: 117 MKRGLETTKRKIEEANRGAEP 137
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 33.5 bits (76), Expect = 0.32
Identities = 20/197 (10%), Positives = 47/197 (23%), Gaps = 24/197 (12%)
Query: 860 EVLWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKL------------ESEN 907
+ L + L + + + + ++ + W+ ++ S
Sbjct: 6 RLASLFESAVSMLPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRR 65
Query: 908 NEYERARRLLAKARAQAGAFQANP----------NSEEIWLAAVKLESENNEYERARRLL 957
N + + + + I + E+ Y A L
Sbjct: 66 NFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEAL 125
Query: 958 AKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEAIKVFPDF--AKLWMMKGQIEEQKN 1015
A + V A + + + + A K F + G
Sbjct: 126 EAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185
Query: 1016 LLDKAHDTFSQAIKKCP 1032
L +A ++A
Sbjct: 186 LFTEAERRLTEANDSPA 202
Score = 28.9 bits (64), Expect = 9.9
Identities = 26/146 (17%), Positives = 42/146 (28%), Gaps = 13/146 (8%)
Query: 862 LWLMGAKSKWLAGDVPAARGILSLAFQANPNSEEIWLAAVKLESENNEYERARRL--LAK 919
+ + A + G+ A L A A W+ AV Y A R +
Sbjct: 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVV-------YGAAERWTDVID 156
Query: 920 ARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKA----RASAPTPRVMIQSAK 975
AG + + +A + + A R L +A A + A
Sbjct: 157 QVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAM 216
Query: 976 LEWCLDNLERALQLLDEAIKVFPDFA 1001
N A+ LL+ P+
Sbjct: 217 ARRSQGNESAAVALLEWLQTTHPEPK 242
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 32.2 bits (74), Expect = 0.34
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032
L + A+ ++AI+ P+F + ++ K + A +T A K
Sbjct: 51 LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 103
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase,
translocation, secretion, protein transport; 2.18A
{Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19
c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A
3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Length = 844
Score = 34.1 bits (79), Expect = 0.35
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 112 KKKDEEEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEE-ADMIYEEIDKRMDEKRKDY 170
+++ EE + L D + G+L D + K+ +E ++I + I + +EK + +
Sbjct: 648 REELPEEWKLDGLVDLINTTY-LDEGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQF 706
Query: 171 REKRLREELERY 182
++++R E E+
Sbjct: 707 GKEQMR-EFEKV 717
Score = 34.1 bits (79), Expect = 0.35
Identities = 16/72 (22%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 281 KKKDEEEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEE-ADMIYEEIDKRMDEKRKDY 339
+++ EE + L D + G+L D + K+ +E ++I + I + +EK + +
Sbjct: 648 REELPEEWKLDGLVDLINTTY-LDEGALEKSDIFGKEPDEMLELIMDRIITKYNEKEEQF 706
Query: 340 REKRLREELERY 351
++++R E E+
Sbjct: 707 GKEQMR-EFEKV 717
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 32.7 bits (75), Expect = 0.36
Identities = 10/86 (11%), Positives = 26/86 (30%), Gaps = 3/86 (3%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
+ +L A + E +K K + + LD+A + ++ P + +
Sbjct: 76 IGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV-- 133
Query: 1040 MLANLEERRKMLIKARSVLEKGRLRN 1065
+A + + +
Sbjct: 134 -VAREMKIVTERRAEKKADSRVTYSK 158
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 33.7 bits (77), Expect = 0.39
Identities = 12/70 (17%), Positives = 31/70 (44%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
L A++ ++A+++ + K +G+ N + A F + ++ P++
Sbjct: 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKT 268
Query: 1040 MLANLEERRK 1049
LA ++R +
Sbjct: 269 QLAVCQQRIR 278
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus
protein, superhelix, de novo protein; 2.30A {Synthetic}
SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 32.0 bits (74), Expect = 0.40
Identities = 9/50 (18%), Positives = 26/50 (52%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK 1029
+ + A++ +A+++ P A+ W G ++ D+A + + +A++
Sbjct: 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131
Score = 32.0 bits (74), Expect = 0.47
Identities = 9/50 (18%), Positives = 26/50 (52%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK 1029
+ + A++ +A+++ P A+ W G ++ D+A + + +A++
Sbjct: 14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Score = 31.2 bits (72), Expect = 0.78
Identities = 9/50 (18%), Positives = 26/50 (52%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK 1029
+ + A++ +A+++ P A+ W G ++ D+A + + +A++
Sbjct: 48 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 97
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 31.9 bits (73), Expect = 0.46
Identities = 11/80 (13%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 975 KLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHS 1034
C + E+A+++ E + + AK + G ++ A +++++ +
Sbjct: 53 DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112
Query: 1035 VPLWIMLANLEERRKMLIKA 1054
+L ++ K+L +
Sbjct: 113 D----VLKKCQQAEKILKEQ 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 31.6 bits (73), Expect = 0.47
Identities = 9/50 (18%), Positives = 27/50 (54%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK 1029
+ + A++ +A+++ P+ A+ W G ++ D+A + + +A++
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Score = 30.4 bits (70), Expect = 1.3
Identities = 9/50 (18%), Positives = 27/50 (54%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK 1029
+ + A++ +A+++ P+ A+ W G ++ D+A + + +A++
Sbjct: 56 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 105
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 32.4 bits (74), Expect = 0.62
Identities = 9/70 (12%), Positives = 25/70 (35%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWI 1039
+ +A+ + +K+ + K G L++A + +A P+++ +
Sbjct: 101 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 160
Query: 1040 MLANLEERRK 1049
+ K
Sbjct: 161 SYELCVNKLK 170
>3h0g_F DNA-directed RNA polymerases I, II, and III subunit rpabc2;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe}
Length = 142
Score = 31.6 bits (71), Expect = 0.79
Identities = 6/57 (10%), Positives = 15/57 (26%)
Query: 115 DEEEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEEADMIYEEIDKRMDEKRKDYR 171
DE + + + DE + ++ E + + E +
Sbjct: 7 DEAFGMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQSGKA 63
Score = 31.6 bits (71), Expect = 0.79
Identities = 6/57 (10%), Positives = 15/57 (26%)
Query: 284 DEEEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEEADMIYEEIDKRMDEKRKDYR 340
DE + + + DE + ++ E + + E +
Sbjct: 7 DEAFGMDGAVMEEEVDELEMIDENGQSQQGVSHPGEPSTTVITEDVASSKTAQSGKA 63
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 30.1 bits (69), Expect = 1.00
Identities = 9/50 (18%), Positives = 27/50 (54%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIK 1029
+ + A++ +A+++ P+ A+ W G ++ D+A + + +A++
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
>3rf3_A Vinculin, metavinculin; alpha-helix bundle domain, cytoskeletal
protein, protein-Pro interactions, cell adhesion,
cytoskeleton; 1.61A {Homo sapiens} PDB: 4dj9_A 1rke_A
1rkc_A 1syq_A 1ydi_A 2gww_A 2hsq_A 2ibf_A 3tj6_A 2gdc_A
3tj5_A 1u6h_A 1xwj_A 1zvz_A 1zw2_A 1zw3_A 3s90_A 4ehp_A
1t01_A
Length = 258
Score = 32.0 bits (72), Expect = 1.1
Identities = 18/154 (11%), Positives = 49/154 (31%), Gaps = 14/154 (9%)
Query: 915 RLLAKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSA 974
L+ + + ++ A +K+E+ + +A ++L S P +I +
Sbjct: 53 NLVRVGKETVQTTEDQILKRDMPPAFIKVENACTKLVQAAQMLQSDPYSVPARDYLIDGS 112
Query: 975 --------KLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQ 1026
L D E +++ + +++ + L
Sbjct: 113 RGILSGTSDLLLTFDEAE-VRKIIRVCKGILEYLTVAEVVETMED-----LVTYTKNLGP 166
Query: 1027 AIKKCPHSVPLWIMLANLEERRKMLIKARSVLEK 1060
+ K + +E R ML+ + + +++
Sbjct: 167 GMTKMAKMIDERQQELTHQEHRVMLVNSMNTVKE 200
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide
repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 148
Score = 30.4 bits (69), Expect = 1.7
Identities = 11/53 (20%), Positives = 22/53 (41%)
Query: 980 LDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032
L++ ++A +AI+ K + Q E+ LD+A + + P
Sbjct: 78 LEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 30.6 bits (68), Expect = 2.0
Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 10/146 (6%)
Query: 918 AKARAQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLE 977
A+ + AG + + A+++ E A A + +
Sbjct: 18 AQRQLVAGEYDE---AAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFD 74
Query: 978 WCLDNLERALQLLDEAIKVFPDFAKLWMM----KGQIEEQKNLLDKAHDTFSQAIKKCPH 1033
L + ++AL + ++ D KLW+ + + +A F + ++
Sbjct: 75 EALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134
Query: 1034 SVPLWIMLANLEERRKMLIKARSVLE 1059
E ++ I + L
Sbjct: 135 RKGET---PGKERMMEVAIDRIAQLG 157
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 31.7 bits (72), Expect = 2.1
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 150 EEADMIYEEIDKRMDEKRKDYREKRLREELERYRQERPKIQQQFSDLKR 198
E+ K++ E + L+E+LE + R K ++Q DL
Sbjct: 1105 EDETSQKNNALKKIRELESHISD--LQEDLESEKAARNKAEKQKRDLSE 1151
Score = 31.7 bits (72), Expect = 2.1
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 319 EEADMIYEEIDKRMDEKRKDYREKRLREELERYRQERPKIQQQFSDLKR 367
E+ K++ E + L+E+LE + R K ++Q DL
Sbjct: 1105 EDETSQKNNALKKIRELESHISD--LQEDLESEKAARNKAEKQKRDLSE 1151
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 31.4 bits (71), Expect = 2.4
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 326 EEIDKRMDEKRKDYREKRLREELERYRQERPKIQQQFSDL-----KRGLVTVSMDEWKNV 380
+E KR + + K R K +E+ E+ R E+ + ++Q D+ + G++ ++ ++
Sbjct: 381 KENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGVMDSLLEALQSG 440
Query: 381 PEVGDARNRKQRNPRA 396
R +Q N +A
Sbjct: 441 AAFRRKRGPRQVNRKA 456
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation,
exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB:
4a4k_A
Length = 997
Score = 31.4 bits (70), Expect = 2.6
Identities = 26/278 (9%), Positives = 76/278 (27%), Gaps = 19/278 (6%)
Query: 117 EEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEEADMIYEEIDKRMDEKRKDYREKRLR 176
E E++ +F E ++ EE I + + D + + L
Sbjct: 528 EALRVEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEICDNDIEKFL--ELM 585
Query: 177 EELERYRQE------RPKIQQQFSDLKRGLVTVSMDEWKNEGQVVGQAIPPPPIPLVNRN 230
+ + R + ++ G V ++ ++
Sbjct: 586 LAYKEATVNLMQEMVKSPSILHILKEGRLVAFRDPNDCLKLGFVFKVSLKDAVCVIMTFT 645
Query: 231 K---------KHFMGVPAPLGYVAGVGRGATGFTTRSDIGPARDANDVSDDRHAAPVKRK 281
K H + P GY + P ++ + AAP+ +
Sbjct: 646 KPYKLPNGEPNHLIYFPKADGYRRRNFPKFQKTDFYMEEVPVTAIEVITKRKFAAPLGKV 705
Query: 282 KKDEEEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEEADMIYEEIDKRMDEKRKDYRE 341
K + E ++ + + + + ++ + + R + + +
Sbjct: 706 IKKDVAALNE--FNAETNNILDGKTLKEAINIEKQGLKIHQILLDRTNIRDEIFKLKSIK 763
Query: 342 KRLREELERYRQERPKIQQQFSDLKRGLVTVSMDEWKN 379
+ + + I+++ +L + ++ +
Sbjct: 764 CPNLSQHIVPKFKAHVIKKKIEELYHLMSDQNLSLLPD 801
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1
thermus thermophilus; 1.60A {Thermus thermophilus} SCOP:
a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Length = 156
Score = 29.8 bits (68), Expect = 3.0
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 173 KRLREELERYRQERPKIQQQ------FSDLK 197
+RL ++LER R+ + + SD
Sbjct: 13 ERLMQQLERERERLQEATKILQELMESSDDY 43
Score = 29.8 bits (68), Expect = 3.0
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 342 KRLREELERYRQERPKIQQQ------FSDLK 366
+RL ++LER R+ + + SD
Sbjct: 13 ERLMQQLERERERLQEATKILQELMESSDDY 43
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold,
ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Length = 997
Score = 30.9 bits (70), Expect = 3.0
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 113 KKDEEEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEE-ADMIYEEIDKRMDEKRKDYR 171
+ E+ D E L + D + EE + + E K + + +
Sbjct: 804 EVHPEDWDLEGLKATLLDTA-PQLQDFPFAELRALKAEEAVERLVEAALKAYEAREAELS 862
Query: 172 EKRLREELERY 182
+R +ER+
Sbjct: 863 PPLMR-AVERF 872
Score = 30.9 bits (70), Expect = 3.0
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 3/71 (4%)
Query: 282 KKDEEEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEE-ADMIYEEIDKRMDEKRKDYR 340
+ E+ D E L + D + EE + + E K + + +
Sbjct: 804 EVHPEDWDLEGLKATLLDTA-PQLQDFPFAELRALKAEEAVERLVEAALKAYEAREAELS 862
Query: 341 EKRLREELERY 351
+R +ER+
Sbjct: 863 PPLMR-AVERF 872
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 31.1 bits (69), Expect = 3.3
Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 118 EDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEEADMIYEEIDKRMDEKRK--DYREKRL 175
++ + DL+ + F +F L ++ E + + R+ R L
Sbjct: 301 KNPQADLDGTGFPKFMDS---LNTFLTRERAIAELRQVRTLARLACNHTREAVARRIPLL 357
Query: 176 REELERYRQERPKIQQQFSDLKR 198
+++ ++ ++ +F+ L
Sbjct: 358 EQDVNELKKRIDSVEPEFNKLTG 380
Score = 31.1 bits (69), Expect = 3.3
Identities = 11/83 (13%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 287 EDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEEADMIYEEIDKRMDEKRK--DYREKRL 344
++ + DL+ + F +F L ++ E + + R+ R L
Sbjct: 301 KNPQADLDGTGFPKFMDS---LNTFLTRERAIAELRQVRTLARLACNHTREAVARRIPLL 357
Query: 345 REELERYRQERPKIQQQFSDLKR 367
+++ ++ ++ +F+ L
Sbjct: 358 EQDVNELKKRIDSVEPEFNKLTG 380
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 29.2 bits (66), Expect = 3.6
Identities = 12/58 (20%), Positives = 25/58 (43%)
Query: 975 KLEWCLDNLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCP 1032
K C+ E+A+++ E + AK G +++N L A F +++ +
Sbjct: 57 KFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114
Score = 28.8 bits (65), Expect = 4.5
Identities = 9/61 (14%), Positives = 26/61 (42%)
Query: 982 NLERALQLLDEAIKVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIML 1041
+ E+A D+AI++ P + K + ++ + +A++ + + ++
Sbjct: 23 DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82
Query: 1042 A 1042
A
Sbjct: 83 A 83
>1dow_A Alpha-catenin; four-helix bundle, cell adhesion; 1.80A {Mus musculus}
SCOP: a.24.9.1 PDB: 1dov_A
Length = 205
Score = 30.1 bits (67), Expect = 4.0
Identities = 30/181 (16%), Positives = 58/181 (32%), Gaps = 28/181 (15%)
Query: 934 EEIWLAAVKLESENNEYERARRLLAKARASAPTPRVMIQSAKLEWCLDNLERALQLLDEA 993
EE+ +A + + + + A A S+ M+++A+ L + R L L D A
Sbjct: 32 EELVVAVEDVRKQGDLMKSAAGEFADDPCSSVKRGNMVRAARA--LLSAVTRLLILADMA 89
Query: 994 I---------KVFPDFAKLWMMKGQIEEQKNLLDKAHDTFSQAIKKCPHSVPLWIMLANL 1044
V KL + + L + + K
Sbjct: 90 DVYKLLVQLKVVEDGILKLRNAGNEQD-----LGIQYKALKPEVDKLNIMAAKRQQELKD 144
Query: 1045 EERRKMLIKARSVLE----------KGRLRNPNCAELWLA--AIRVEIRAGLKDIANTMM 1092
R + AR +L+ + L++P+ A I +++ + I+N
Sbjct: 145 VGNRDQMAAARGILQKNVPILYTASQACLQHPDVAAYKANRDLIYKQLQQAVTGISNAAQ 204
Query: 1093 A 1093
A
Sbjct: 205 A 205
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic
protein, MEM protein; 3.50A {Aggregatibacter
actinomycetemcomitans} PDB: 4dk1_A
Length = 369
Score = 30.5 bits (69), Expect = 4.1
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 897 WLAAVKLESENNEYERARRLLAKARAQAGAFQANPNSEEIW------LAAVKLESENNEY 950
LA + ++ N + LA +AQ A + + L K S +
Sbjct: 59 LLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSL-DTL 117
Query: 951 ERARRLLAKARASAPTPRVMIQSAK 975
A+ L A+A + I+ A+
Sbjct: 118 NTAKATLNNAKAEMDVVQENIKQAE 142
>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta
protein, actin-like fold, alternative splicing, calcium,
glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB:
3cj7_A* 3cj9_A* 3cja_A*
Length = 456
Score = 30.0 bits (66), Expect = 5.3
Identities = 7/51 (13%), Positives = 18/51 (35%)
Query: 810 CPKSEVLWLMGAKSNKKSIWLRAAYFEKNHGTRESLETLLQKAVAHCPKSE 860
+++ + S ++Y +SL L++A+ P+
Sbjct: 56 DKENDTGIVGQHSSCDVQGGGISSYANDPSKAGQSLVRCLEQALRDVPRDR 106
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase,
transferase-transferase inhibitor; HET: SUC 3CX FPP 778;
2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A*
3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Length = 349
Score = 29.4 bits (65), Expect = 7.9
Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 984 ERALQLLDEAIKVFPDFAKLWMMKGQI-EEQKNLLDKAHDTFSQAIKKCPHSVPLW 1038
ERAL+L + +++ P +W + + L+ ++ + S +W
Sbjct: 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVW 126
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 29.1 bits (64), Expect = 8.0
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 115 DEEEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEEADMI----------YEEIDKRMD 164
ED +N F E NG D+ +E + I +E+D
Sbjct: 62 GASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 121
Query: 165 EKRKDYREKRLREELERYRQERPKIQQQ 192
+++REK ++ E +++ ++++
Sbjct: 122 VMEQEWREKAKKDLEEWNQRQSEQVEKN 149
Score = 29.1 bits (64), Expect = 8.0
Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 284 DEEEDDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDEEADMI----------YEEIDKRMD 333
ED +N F E NG D+ +E + I +E+D
Sbjct: 62 GASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 121
Query: 334 EKRKDYREKRLREELERYRQERPKIQQQ 361
+++REK ++ E +++ ++++
Sbjct: 122 VMEQEWREKAKKDLEEWNQRQSEQVEKN 149
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; 2.24A {Burkholderia xenovorans}
Length = 339
Score = 29.2 bits (66), Expect = 8.0
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 24/63 (38%)
Query: 909 EYERARRLLAKAR-AQAGAFQAN------PNSEEIWLAAVKLESENNEYERARRLLAKAR 961
E A +L A+ AQ G + + + Y +L +A+
Sbjct: 272 EITTATEILLAAQSAQWGPTRYHDTLHDRAS-----------------YRYYWSVLRRAQ 314
Query: 962 ASA 964
A+
Sbjct: 315 ATG 317
>3qlb_A FETA, enantio-pyochelin receptor; membrane protein, transport,
ferri-enantiopyochelin, outer M metal transport; HET:
CIT EFE; 3.26A {Pseudomonas fluorescens}
Length = 748
Score = 29.6 bits (67), Expect = 8.3
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 72 LGYVAGVGRGATGFTTRSD 90
L Y AGV T + R D
Sbjct: 125 LRYTAGVQANTTAASQRFD 143
Score = 29.6 bits (67), Expect = 8.3
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 241 LGYVAGVGRGATGFTTRSD 259
L Y AGV T + R D
Sbjct: 125 LRYTAGVQANTTAASQRFD 143
>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative; HET: MSE; 2.44A {Ralstonia
eutropha}
Length = 332
Score = 29.2 bits (66), Expect = 9.2
Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 12/57 (21%)
Query: 909 EYERARRLLAKAR-AQAGAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARASA 964
E E A +L A+ A G Q + A Y +L KA+ +
Sbjct: 273 EVEDAAGILVAAQDADWGPIQYKGELHD---RAT--------YRYFWEVLQKAKVTG 318
>3rj1_B Mediator of RNA polymerase II transcription subun; RNA polymeras
II, POL II, head module, head, regulator, helical
bundle; 4.30A {Saccharomyces cerevisiae}
Length = 583
Score = 29.5 bits (65), Expect = 10.0
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Query: 92 GPARDANDVSDDRHAAPVKRKKKDEEE-DDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDE 150
GP D+++ +K+ D + + E + DE G D DKD+
Sbjct: 14 GPGFKFVDLNEKELQNEIKQLGSDSSDGHNSEKKDTDGADENVQIGEDFMEVDYEDKDNP 73
Query: 151 EADMIYEEIDKRMDEKRKDYREKRLR-EELERYRQE 185
+ + + D E + E+ + R++
Sbjct: 74 VDSRNETDHKTNENGETDDNIETVMTQEQFVKRRRD 109
Score = 29.5 bits (65), Expect = 10.0
Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 2/96 (2%)
Query: 261 GPARDANDVSDDRHAAPVKRKKKDEEE-DDEEDLNDSNFDEFNGYGGSLFNKDPYDKDDE 319
GP D+++ +K+ D + + E + DE G D DKD+
Sbjct: 14 GPGFKFVDLNEKELQNEIKQLGSDSSDGHNSEKKDTDGADENVQIGEDFMEVDYEDKDNP 73
Query: 320 EADMIYEEIDKRMDEKRKDYREKRLR-EELERYRQE 354
+ + + D E + E+ + R++
Sbjct: 74 VDSRNETDHKTNENGETDDNIETVMTQEQFVKRRRD 109
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.392
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 20,346,029
Number of extensions: 1312671
Number of successful extensions: 5791
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5081
Number of HSP's successfully gapped: 450
Length of query: 1278
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1173
Effective length of database: 3,770,088
Effective search space: 4422313224
Effective search space used: 4422313224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.0 bits)